EDIT

ref #5448 Remove unnecessary saving

ref #5448 Enhance name checking

fix #6035 one more broken character

fix #6093 including more taxa into algea registry import

ref #6097 filter to include algae only - better match pattern

#6097 filter to include algae only

moving TestDatabase back to main - a couple of classes had complie errors

removing duplicate repository

Merge branch 'IAPT'

Conflicts:
app-import/.gitignore
app-import/pom.xml

move test classes in app-import

fix #6095 log duplicate registrations during import

fix #6094 importing 'registration' data into an Extension object

ref #6026 SpecimenType = FOSSIL for fossil taxa/names

ref #6026 more parser improvements and tests

move test classes in app-import

ref #6026 more parser improvements and tests

ref #6026 improving specimenType parsers: better recognition of 'Coll. something' types

ref #6026 solving problems in date and specimenType parsers, also implementing tests

ref #6035 adding more character fixed and adding source referenence for all names

ref #6026 'Coll. Lange-Bertalot..' as titleCache of Collection

ref #6026 using genera as higher taxon for species

fix #6068

ref #6026 3 more character replacement rule

ref #6026 fixing rank

ref #6026 fixing bug in publication regex pattern

ref #6026 speedup of import and fixing a minor bug

• speedup by special handling for hardly to parse reference
• minor bug during camparison of basionym names

ref #6026 keepgin deteced ref type in case of 'Vorabdruck'

ref #6026 NameTypes (with minor problems)

ref #6026 FieldUnit locality working

removing unused repo from the pom.xml (was used for yourkit)

minor

#5448 Imporve name check for multiple ex authors

#5448 Improve import of families

• clone families for checklist
• load in related objects method

#5448 Change abbrev label of unranked infraspecfic rank before importing

ref #5448 Reduce multiple ex authors to only two

ref #5448 Reduce multiple ex authors to only two

adaption to specimen import changes

#5448 Fix import of hybrid formula

ref #5448 code cleanup

#5448 Refactor hybrid name import/check

#5448 Use SEQNUM as id column

• enhance hybrid name check

#5448 Import genus hybrid formulas

#5448 Support corner cases

• SPI and KMB as ranks
• nomenclatural status type
• HYB name checking

#5448 Handle rank "SPI"

#5448 Import non-CDM ranks

#5448 Remove non-exisiting hybrid category

#5448 Import HYB 'nf'

#5448 Import rank "SAM"

#6000 Use new CASUAL Method instead of deprecated INTRODUCED_ADVENTITIOUS

#5448 Add "distinct" to SQL query as family table contains duplicate
rows

#5488 Improve import of family taxa

• Load families in related object methods

#5448 Fix hybrid import where specific epithets are not from same genus

#5448 Add family rank

#5448 Fix hybrid import where specific epithets are not from same genus

ref #6026 handling 'Vorabdrucke' as Book Volume/Issue

ref #6026 support for making statistics on parsed type data - typo

ref #6026 importing Basionyms

ref #6026 support for making statistics on parsed type data:
Type parsing statistics:

• Type: field 'Type' can not be parsed (parse problem of whole typeString)
• Type: fielUnitStr can not be parsed (parse problem of fielUnitStr)
• Type: Could not parse specimen (parse problems in holotype, isotype)

ref #6026 better type parsing

• FieldUnit: collector, fieldnumber, date
• Specimen: Collection, Subcollection, accession number Does not work in all cases

ref #6026 two more date parsing rules

ref #6026 type parsing

• parsing of specimen types

ref #6026 publication date parsing completed

ref #6009 improved plublication date parsing

• all dates recognized
• all months recognized
• special time spans not implemented (Winter, Fall, April-June, etc)

ref #6009 improved plublication date parsing

#5448 Imporve name check for multiple ex authors

#5448 Improve import of families

• clone families for checklist
• load in related objects method

#5448 Change abbrev label of unranked infraspecfic rank before importing

ref #5448 Reduce multiple ex authors to only two

ref #5448 Reduce multiple ex authors to only two

ref #6035 more character replacement rules

fix #6035 character replacement rules

removing unused code

Alternative data files

adaption to specimen import changes

ref #6026 first basic import of types

ref #6026 multiple improvements

• better ranks for incertis sedis and old Classes
• Caveats as annotations

#5448 Fix import of hybrid formula

ref #5448 code cleanup

#5448 Refactor hybrid name import/check

#5448 Use SEQNUM as id column

• enhance hybrid name check

ref #6026 multiple improvements

• importing notes as annotations
• improved rank guessing
• solving performance problems related to classification root node
• better tilecache and nameCache plausibility checks

#5448 Import genus hybrid formulas

ref #6026 multiple improvements

• better handling of fossil taxa
• Authors spelling as misspellings
• fix related to publication year
• "Author abbreviation not checked" as annotations

#6026 import of taxa and names working

#5448 Support corner cases

• SPI and KMB as ranks
• nomenclatural status type
• HYB name checking

#5448 Handle rank "SPI"

#5448 Import non-CDM ranks

#5448 Remove non-exisiting hybrid category

#5448 Import HYB 'nf'

#5448 Import rank "SAM"

#6000 Use new CASUAL Method instead of deprecated INTRODUCED_ADVENTITIOUS

Fixing strange dependency problem related to spring-orm version

Initial set of classes for the IAPT import

removing build.xml

gitignore

#5448 Add "distinct" to SQL query as family table contains duplicate
rows

removing build.xml

gitignore

Fixing repository settings and project group id

Fixing repository settings and project group id