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cdmlib-apps / app-import / src / main / java / eu / etaxonomy / cdm / io @ 74d84f79

# Date Author Comment
74d84f79 09/13/2016 12:07 AM Andreas Kohlbecker

ref #6026 using genera as higher taxon for species

658c4382 09/12/2016 03:34 PM Andreas Kohlbecker

fix #6068

bdf849a5 09/12/2016 03:03 PM Andreas Kohlbecker

ref #6026 3 more character replacement rule

b67e063e 09/12/2016 02:36 PM Andreas Kohlbecker

ref #6026 fixing rank

945f3ef3 09/12/2016 12:36 PM Andreas Kohlbecker

ref #6026 fixing bug in publication regex pattern

438dd662 09/12/2016 12:08 PM Andreas Kohlbecker

ref #6026 speedup of import and fixing a minor bug
- speedup by special handling for hardly to parse reference
- minor bug during camparison of basionym names

d918758a 09/12/2016 11:33 AM Andreas Kohlbecker

ref #6026 keepgin deteced ref type in case of 'Vorabdruck'

1496a7e6 09/09/2016 04:57 PM Andreas Kohlbecker

ref #6026 NameTypes (with minor problems)

962dc999 09/09/2016 12:21 PM Andreas Kohlbecker

ref #6026 FieldUnit locality working

7a2e883f 09/09/2016 09:20 AM Andreas Kohlbecker

minor

bcc15deb 09/09/2016 09:05 AM Patrick Plitzner

#5448 Imporve name check for multiple ex authors

38b8e920 09/09/2016 09:05 AM Patrick Plitzner

#5448 Improve import of families
- clone families for checklist
- load in related objects method

307bc7da 09/09/2016 09:05 AM Patrick Plitzner

#5448 Change abbrev label of unranked infraspecfic rank before importing

d27fae52 09/09/2016 09:05 AM Patrick Plitzner

ref #5448 Reduce multiple ex authors to only two

abf1c13b 09/09/2016 09:05 AM Patrick Plitzner

ref #5448 Reduce multiple ex authors to only two

5c81a80c 09/09/2016 09:05 AM Patrick Plitzner

#5448 Fix import of hybrid formula

19ed9439 09/09/2016 09:05 AM Patrick Plitzner

ref #5448 code cleanup

4cb8b437 09/09/2016 09:05 AM Patrick Plitzner

#5448 Refactor hybrid name import/check

817f2688 09/09/2016 09:05 AM Patrick Plitzner

#5448 Use SEQNUM as id column
- enhance hybrid name check

62c9db2c 09/09/2016 09:05 AM Patrick Plitzner

#5448 Import genus hybrid formulas

09549132 09/09/2016 09:05 AM Patrick Plitzner

#5448 Support corner cases
- SPI and KMB as ranks
- nomenclatural status type
- HYB name checking

f39b51ab 09/09/2016 09:05 AM Patrick Plitzner

#5448 Handle rank "SPI"

1677827c 09/09/2016 09:05 AM Patrick Plitzner

#5448 Import non-CDM ranks

20fc4e0b 09/09/2016 09:05 AM Patrick Plitzner

#5448 Remove non-exisiting hybrid category

933eee97 09/09/2016 09:05 AM Patrick Plitzner

#5448 Import HYB 'nf'

1d5daa79 09/09/2016 09:05 AM Patrick Plitzner

#5448 Import rank "SAM"

48003e9f 09/09/2016 09:05 AM Andreas Müller

#6000 Use new CASUAL Method instead of deprecated INTRODUCED_ADVENTITIOUS

42c9c152 09/09/2016 09:05 AM Patrick Plitzner

#5448 Add "distinct" to SQL query as family table contains duplicate
rows

a2c424c2 09/09/2016 09:05 AM Patrick Plitzner

#5488 Improve import of family taxa
- Load families in related object methods

4af5ff7a 09/09/2016 09:05 AM Patrick Plitzner

#5448 Fix hybrid import where specific epithets are not from same genus

6dee9f63 09/09/2016 09:05 AM Patrick Plitzner

#5448 Add family rank

71b0a23c 09/09/2016 09:05 AM Patrick Plitzner

#5448 Fix hybrid import where specific epithets are not from same genus

72bde1d7 09/09/2016 08:59 AM Andreas Kohlbecker

ref #6026 handling 'Vorabdrucke' as Book Volume/Issue

9ee079fa 09/09/2016 07:36 AM Andreas Kohlbecker

ref #6026 support for making statistics on parsed type data - typo

c167aac2 09/08/2016 03:40 PM Andreas Kohlbecker

ref #6026 importing Basionyms

9cc443ab 09/08/2016 02:47 PM Andreas Kohlbecker

ref #6026 support for making statistics on parsed type data:
Type parsing statistics:
- Type: field 'Type' can not be parsed (parse problem of whole typeString)
- Type: fielUnitStr can not be parsed (parse problem of fielUnitStr)
- Type: Could not parse specimen (parse problems in holotype, isotype)

1968849d 09/08/2016 02:38 PM Andreas Kohlbecker

ref #6026 better type parsing
- FieldUnit: collector, fieldnumber, date
- Specimen: Collection, Subcollection, accession number
Does not work in all cases

64c0db54 09/07/2016 02:56 PM Andreas Kohlbecker

ref #6026 two more date parsing rules

adff9167 09/07/2016 12:20 PM Andreas Kohlbecker

ref #6026 type parsing
- parsing of specimen types

f465df63 09/06/2016 12:13 PM Andreas Kohlbecker

ref #6026 publication date parsing completed

c83f34f1 09/06/2016 08:58 AM Andreas Kohlbecker

ref #6009 improved plublication date parsing
- all dates recognized
- all months recognized
- special time spans not implemented (Winter, Fall, April-June, etc)

bde99bfd 09/06/2016 08:55 AM Andreas Kohlbecker

ref #6009 improved plublication date parsing

5c7f2505 08/30/2016 02:07 PM Andreas Kohlbecker

ref #6035 more character replacement rules

e082affd 08/30/2016 01:26 PM Andreas Kohlbecker

fix #6035 character replacement rules

b0a3a620 08/30/2016 12:46 PM Andreas Kohlbecker

removing unused code

565df21b 08/04/2016 10:16 PM Andreas Kohlbecker

ref #6026 first basic import of types

1a924f2f 08/03/2016 04:09 PM Andreas Kohlbecker

ref #6026 multiple improvements
- better ranks for incertis sedis and old Classes
- Caveats as annotations

e7ed2bb6 08/03/2016 07:52 AM Andreas Kohlbecker

ref #6026 multiple improvements
- importing notes as annotations
- improved rank guessing
- solving performance problems related to classification root node
- better tilecache and nameCache plausibility checks

f261b330 08/02/2016 10:21 AM Andreas Kohlbecker

ref #6026 multiple improvements
- better handling of fossil taxa
- Authors spelling as misspellings
- fix related to publication year
- "Author abbreviation not checked" as annotations

4cebdf13 08/01/2016 04:30 PM Andreas Kohlbecker

#6026 import of taxa and names working

8bec79dd 07/27/2016 05:13 PM Andreas Kohlbecker

Initial set of classes for the IAPT import

cc9d28ec 07/26/2016 09:01 AM Patrick Plitzner

#5448 Pass rank and nomenclatural code to name parser creation

d4f17a57 07/26/2016 08:11 AM Patrick Plitzner

#5448 Import hybrid with more than 2 parents with protected titlecache

70f3e481 07/26/2016 08:07 AM Patrick Plitzner

#5448 Add missing ranks to transformer

9e2583cf 07/25/2016 04:43 PM Patrick Plitzner

#5448 Enhance taxon name check

e3cf774c 07/25/2016 04:42 PM Patrick Plitzner

#5448 Fix import of families

c8c58de5 07/18/2016 05:05 PM Patrick Plitzner

#5448 change DB table name

ae538f84 07/18/2016 05:05 PM Patrick Plitzner

#5448 Fix import of hybrids due to merge conflicts

d5e984f6 07/18/2016 05:04 PM Patrick Plitzner

#5448 Fix potential NPEs

a6b3a090 07/18/2016 12:34 PM Patrick Plitzner

#5448 Import annotation infos
- hybrid formula
- ehrd, atlas, kart, flor, rl2015, wissk

6375d175 07/18/2016 10:44 AM Patrick Plitzner

#5448 Fix title cache and LIE issues

c0c4c356 07/18/2016 10:44 AM Patrick Plitzner

#5448 Import cultivar as CultivarPlantName

c98ea2df 07/18/2016 10:40 AM Patrick Plitzner

#5448 Add taxa to their respective families

308d3755 07/18/2016 10:40 AM Patrick Plitzner

#5448 Import families

9e7339f0 07/18/2016 10:40 AM Patrick Plitzner

#5448 javadoc

5e20e0f2 07/18/2016 10:40 AM Patrick Plitzner

#5448 Fix possible NPE

e138a102 07/18/2016 10:40 AM Patrick Plitzner

#5448 Avoid clonig of all taxa for all classifications

e85d547d 07/18/2016 10:40 AM Patrick Plitzner

#5448 Save concept relations

a4854e75 07/18/2016 10:40 AM Patrick Plitzner

#5448 typo

75733adf 07/18/2016 10:40 AM Patrick Plitzner

#5448 Set species epithet for species groups and aggregates

783428fc 07/18/2016 10:40 AM Patrick Plitzner

#5448 Move import of concept relationships to classification import
class
- there we already have the accepted taxa for the synonyms

b4aea28a 07/14/2016 08:59 AM Patrick Plitzner

#5448 Set meaningful reference names

231d88bb 07/14/2016 08:42 AM Patrick Plitzner

Small additions to import
- import nomenclatural status extra information to ruleConsidered
- refresh title cache of taxa to correctly display sec ref
- advanced title cache consistency check
- import common name with german language

0429965c 07/06/2016 01:18 AM Andreas Müller

#5822 / #5892 Mexico rubiaceae import

1760dc20 06/29/2016 01:55 PM Andreas Müller

#5791 Adapt type of E+M vocabulary.

f02a23b5 06/21/2016 05:50 PM Patrick Plitzner

Add missing nomenclatural status and taxon relations to transformer
#5448

026fe0de 06/21/2016 05:50 PM Patrick Plitzner

Add missing taxa to related objects #5448

27434a93 06/21/2016 02:39 PM Andreas Müller

Add id_1 mapping to mexico

ad6b62ca 06/21/2016 10:35 AM Patrick Plitzner

Fix ClassCastException, improve taxon name check, fix rank evaluation
#5448

b2ce7834 06/20/2016 05:08 PM Andreas Müller

Update to mexico import #5822 / #5892

766713c7 06/20/2016 10:48 AM Patrick Plitzner

Import synonyms of other classifications #5448

e2cf0d65 06/20/2016 10:48 AM Patrick Plitzner

Set sec reference for all taxa #5448

11b06c28 06/17/2016 11:47 PM Andreas Müller

First version of Mexico import #5822

be0841bf 06/02/2016 02:09 PM Patrick Plitzner

Improve name check for unranked taxa #5448

9301ba90 06/02/2016 02:09 PM Patrick Plitzner

Import unranked taxa #5448

b3b2515e 06/02/2016 02:09 PM Patrick Plitzner

Refactoring/code clean-up #5448

fac4774f 06/02/2016 02:09 PM Patrick Plitzner

Import common name #5448

7f40ba60 06/02/2016 02:09 PM Patrick Plitzner

Import additional hybrid variants #5448

64879c3f 05/31/2016 11:41 AM Patrick Plitzner

Set source ref for taxa #5448

cefdede1 05/30/2016 10:22 AM Patrick Plitzner

Improve taxon name check #5448

8422c0cd 05/25/2016 12:52 PM Andreas Müller

Remove generics from Reference in cdmlib-app #5830

64cd7355 05/25/2016 10:25 AM Patrick Plitzner

Improve logging messages #5448

a1c44317 05/25/2016 10:24 AM Patrick Plitzner

Add SEQNUM #5448

74525264 05/25/2016 10:24 AM Patrick Plitzner

Import hybrid formulas #5448

4ae09d10 05/24/2016 04:44 PM Patrick Plitzner

Add taxa to classifications #5448

a9cb0bc8 05/24/2016 10:28 AM Patrick Plitzner

Correctly set relationship direction #5448

bac828e0 05/24/2016 10:28 AM Patrick Plitzner

Import concept relations E, W, K, AW, AO, R, O, S #5448

f3f4d328 05/23/2016 07:41 PM Patrick Plitzner

Refactor names and taxa creation #5448

d72d4db9 05/23/2016 07:17 PM Patrick Plitzner

Add 8 more classifications #5448

48cd39f3 05/23/2016 05:53 PM Patrick Plitzner

improve taxon name check #5448
- add new string constants

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