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/**
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* Copyright (C) 2018 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.vaadin.view.name;
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import java.util.ArrayList;
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import java.util.Arrays;
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import java.util.EnumSet;
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import java.util.HashSet;
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import java.util.List;
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import java.util.Optional;
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import java.util.UUID;
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import java.util.stream.Collectors;
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import org.apache.log4j.Logger;
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import org.hibernate.criterion.Restrictions;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.context.annotation.Scope;
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import org.vaadin.spring.events.annotation.EventBusListenerMethod;
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import com.vaadin.data.util.BeanItemContainer;
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import com.vaadin.spring.annotation.SpringComponent;
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import eu.etaxonomy.cdm.api.service.DeleteResult;
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import eu.etaxonomy.cdm.api.service.IService;
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import eu.etaxonomy.cdm.api.service.registration.IRegistrationWorkingSetService;
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import eu.etaxonomy.cdm.api.service.registration.RegistrationWorkingSetService;
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import eu.etaxonomy.cdm.format.reference.ReferenceEllypsisFormatter;
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import eu.etaxonomy.cdm.format.reference.ReferenceEllypsisFormatter.LabelType;
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import eu.etaxonomy.cdm.model.common.Annotation;
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import eu.etaxonomy.cdm.model.common.AnnotationType;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignation;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.TaxonName;
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import eu.etaxonomy.cdm.model.permission.CRUD;
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import eu.etaxonomy.cdm.model.reference.NamedSource;
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import eu.etaxonomy.cdm.model.reference.NamedSourceBase;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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import eu.etaxonomy.cdm.model.reference.ReferenceType;
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import eu.etaxonomy.cdm.persistence.dao.initializer.EntityInitStrategy;
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import eu.etaxonomy.cdm.service.CdmFilterablePagingProvider;
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import eu.etaxonomy.cdm.service.CdmStore;
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import eu.etaxonomy.cdm.service.UserHelperAccess;
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import eu.etaxonomy.cdm.vaadin.event.EditorActionTypeFilter;
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import eu.etaxonomy.cdm.vaadin.event.EntityChangeEvent;
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import eu.etaxonomy.cdm.vaadin.event.EntityChangeEvent.Type;
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import eu.etaxonomy.cdm.vaadin.event.ReferenceEditorAction;
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import eu.etaxonomy.cdm.vaadin.event.TaxonNameEditorAction;
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import eu.etaxonomy.cdm.vaadin.event.ToOneRelatedEntityButtonUpdater;
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import eu.etaxonomy.cdm.vaadin.event.ToOneRelatedEntityReloader;
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import eu.etaxonomy.cdm.vaadin.ui.RegistrationUIDefaults;
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import eu.etaxonomy.cdm.vaadin.ui.config.TaxonNamePopupEditorConfig;
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import eu.etaxonomy.cdm.vaadin.util.ReferenceEllypsisCaptionGenerator;
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import eu.etaxonomy.cdm.vaadin.view.reference.ReferencePopupEditor;
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import eu.etaxonomy.cdm.vaadin.view.reference.RegistrationUiReferenceEditorFormConfigurator;
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import eu.etaxonomy.vaadin.mvp.AbstractCdmEditorPresenter;
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import eu.etaxonomy.vaadin.mvp.AbstractView;
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import eu.etaxonomy.vaadin.mvp.BeanInstantiator;
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import eu.etaxonomy.vaadin.mvp.BoundField;
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import eu.etaxonomy.vaadin.ui.view.PopupView;
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/**
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* @author a.kohlbecker
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* @since Jan 26, 2018
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*
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*/
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@SpringComponent
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@Scope("prototype")
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public class NameTypeDesignationPresenter
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extends AbstractCdmEditorPresenter<NameTypeDesignation, NameTypeDesignationEditorView> {
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private static final long serialVersionUID = 896305051895903033L;
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public static final Logger logger = Logger.getLogger(SpecimenTypeDesignationWorkingsetEditorPresenter.class);
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@Autowired
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private IRegistrationWorkingSetService registrationWorkingSetService;
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HashSet<TaxonName> typifiedNamesAsLoaded;
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private TaxonName typifiedNameInContext;
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/**
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* The unit of publication in which the type designation has been published.
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* This may be any type listed in {@link RegistrationUIDefaults#NOMECLATURAL_PUBLICATION_UNIT_TYPES}
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* but never a {@link ReferenceType#Section}
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*/
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private NamedSourceBase publishedUnit;
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protected static BeanInstantiator<NameTypeDesignation> defaultBeanInstantiator = new BeanInstantiator<NameTypeDesignation>() {
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@Override
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public NameTypeDesignation createNewBean() {
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return NameTypeDesignation.NewInstance();
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}
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};
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private CdmFilterablePagingProvider<Reference,Reference> referencePagingProvider;
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private BeanInstantiator<Reference> newReferenceInstantiator;
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@Override
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protected BeanInstantiator<NameTypeDesignation> defaultBeanInstantiator(){
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return defaultBeanInstantiator;
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}
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@Override
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protected NameTypeDesignation loadBeanById(Object identifier) {
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NameTypeDesignation bean;
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NameTypeDesignationWorkingsetIds idset = (NameTypeDesignationWorkingsetIds)identifier;
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if(idset.isForNewTypeDesignation()) {
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Reference reference = getRepo().getReferenceService().load(idset.getPublishedUnitUuid());
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try {
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setPublishedUnit(NamedSource.NewPrimarySourceInstance(reference, null));
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} catch(Exception e) {
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throw new RuntimeException("Refernce of invalid type passed via NameTypeDesignationWorkingsetIds as publishedUnitUuid ", e);
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}
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EntityInitStrategy initstrategy = RegistrationWorkingSetService.NAME_INIT_STRATEGY
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.clone()
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.extend("typeDesignations", RegistrationWorkingSetService.TYPEDESIGNATION_INIT_STRATEGY, true);
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typifiedNameInContext = getRepo().getNameService().load(idset.getTypifiedNameUuid(), initstrategy.getPropertyPaths());
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bean = super.loadBeanById(null);
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} else {
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bean = super.loadBeanById(idset.getBaseEntityRef().getUuid());
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// TODO prevent from errors due to inconsistent data, two options:
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// 1. handle error condition here
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// 2. always set typifiedNameUuid in NameTypeDesignationWorkingsetIds
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typifiedNameInContext = bean.getTypifiedNames().iterator().next();
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try {
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setPublishedUnit(bean.getTypifiedNames().iterator().next().getNomenclaturalSource());
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} catch (Exception e) {
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// FIXME report error state instead
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logger.error("Error on finding published unit in " + bean, e);
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}
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}
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Reference typifiedNameNomRef = typifiedNameInContext.getNomenclaturalReference();
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while(typifiedNameNomRef.getType().equals(ReferenceType.Section)
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&& typifiedNameNomRef.getInReference() != null) {
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typifiedNameNomRef = typifiedNameNomRef.getInReference();
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}
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getView().setInTypedesignationOnlyAct(Optional.of(typifiedNameNomRef != null && !typifiedNameNomRef.equals(getPublishedUnit().getCitation())));
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if (getPublishedUnit() != null) {
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// reduce available references to those which are sections of
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// the publicationUnit and the publishedUnit itself
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referencePagingProvider.getCriteria()
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.add(Restrictions.or(
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Restrictions.and(
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Restrictions.eq("inReference", getPublishedUnit().getCitation()),
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Restrictions.eq("type", ReferenceType.Section)),
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Restrictions.idEq(publishedUnit.getCitation().getId()))
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);
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// new Reference only a sub sections of the publishedUnit
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newReferenceInstantiator = new BeanInstantiator<Reference>() {
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@Override
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public Reference createNewBean() {
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Reference newRef = ReferenceFactory.newSection();
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Reference reference = getRepo().getReferenceService().load(
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getPublishedUnit().getCitation().getUuid(),
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ReferenceEllypsisFormatter.INIT_STRATEGY
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);
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newRef.setInReference(reference);
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return newRef;
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}
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};
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}
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getView().getTypeStatusSelect().setContainerDataSource(provideTypeStatusTermItemContainer());
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return bean;
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}
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@Override
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protected NameTypeDesignation loadCdmEntity(UUID uuid) {
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EntityInitStrategy initStrategy = new EntityInitStrategy(Arrays.asList(new String []{
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"$",
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"annotations.*", // * is needed as log as we are using a table in FilterableAnnotationsField
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"typifiedNames.typeDesignations", // important !!
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"typifiedNames.nomenclaturalSource.citation",
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"typeName.$",
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"source.citation",
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"source.annotations",
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"source.markers",
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"source.links",
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}
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));
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initStrategy.extend("citation", ReferenceEllypsisFormatter.INIT_STRATEGY, false);
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NameTypeDesignation typeDesignation;
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if(uuid != null){
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typeDesignation = (NameTypeDesignation) getRepo().getNameService().loadTypeDesignation(uuid, initStrategy.getPropertyPaths());
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} else {
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typeDesignation = createNewBean();
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}
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typifiedNamesAsLoaded = new HashSet<>(typeDesignation.getTypifiedNames());
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return typeDesignation;
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}
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protected BeanItemContainer<NameTypeDesignationStatus> provideTypeStatusTermItemContainer() {
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BeanItemContainer<NameTypeDesignationStatus> container = cdmBeanItemContainerFactory.buildBeanItemContainer(NameTypeDesignationStatus.class);
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List<NameTypeDesignationStatus> filteredItems = container.getItemIds().stream().filter(tsb ->
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getView().checkInTypeDesignationOnlyAct()
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|| tsb.hasDesignationSource() == true
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)
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.collect(Collectors.toList());
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container.removeAllItems();
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container.addAll(filteredItems);
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return container;
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}
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@Override
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public void handleViewEntered() {
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getView().getTypeStatusSelect().setContainerDataSource(cdmBeanItemContainerFactory.buildBeanItemContainer(NameTypeDesignationStatus.class));
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getView().getTypeStatusSelect().setItemCaptionPropertyId("description");
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getView().getTypeStatusSelect().setNullSelectionAllowed(true);
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getView().getDesignationReferenceCombobox().getSelect().setCaptionGenerator(
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new ReferenceEllypsisCaptionGenerator(LabelType.BIBLIOGRAPHIC, getView().getDesignationReferenceCombobox().getSelect())
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);
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referencePagingProvider = pagingProviderFactory.referencePagingProvider();
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getView().getDesignationReferenceCombobox().loadFrom(referencePagingProvider, referencePagingProvider, referencePagingProvider.getPageSize());
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getView().getDesignationReferenceCombobox().setNestedButtonStateUpdater(new ToOneRelatedEntityButtonUpdater<Reference>(getView().getDesignationReferenceCombobox()));
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getView().getDesignationReferenceCombobox().getSelect().addValueChangeListener(new ToOneRelatedEntityReloader<>(getView().getDesignationReferenceCombobox(), this));
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CdmFilterablePagingProvider<TaxonName,TaxonName> namePagingProvider = pagingProviderFactory.taxonNamesWithoutOrthophicIncorrect();
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getView().getTypeNameField().loadFrom(namePagingProvider, namePagingProvider, namePagingProvider.getPageSize());
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getView().getTypeNameField().setNestedButtonStateUpdater(new ToOneRelatedEntityButtonUpdater<TaxonName>(getView().getTypeNameField()));
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getView().getTypeNameField().getSelect().addValueChangeListener(new ToOneRelatedEntityReloader<>(getView().getTypeNameField(), this));
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getView().getTypifiedNamesComboboxSelect().setPagingProviders(namePagingProvider, namePagingProvider, namePagingProvider.getPageSize(), this);
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getView().getAnnotationsField().setAnnotationTypeItemContainer(cdmBeanItemContainerFactory.buildVocabularyTermsItemContainer(
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AnnotationType.EDITORIAL().getVocabulary().getUuid()));
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}
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@Override
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protected void guaranteePerEntityCRUDPermissions(UUID identifier) {
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if(crud != null){
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newAuthorityCreated = UserHelperAccess.userHelper().createAuthorityForCurrentUser(NameTypeDesignation.class, identifier, crud, null);
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}
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}
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@Override
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protected void guaranteePerEntityCRUDPermissions(NameTypeDesignation bean) {
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// TODO Auto-generated method stub
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}
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@Override
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protected IService<NameTypeDesignation> getService() {
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// No TypeDesignationService :( so I need override the generic save and delete methods
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return null;
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}
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@Override
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protected void deleteBean(NameTypeDesignation bean){
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// deleteTypedesignation(uuid, uuid) needs to be called so the name is loaded in the transaction of the method and is saved.
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DeleteResult deletResult = getRepo().getNameService().deleteTypeDesignation(typifiedNameInContext.getUuid(), bean.getUuid());
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if(deletResult.isOk()){
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EntityChangeEvent changeEvent = new EntityChangeEvent(bean, Type.REMOVED, (AbstractView) getView());
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viewEventBus.publish(this, changeEvent);
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} else {
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CdmStore.handleDeleteresultInError(deletResult);
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}
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}
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@Override
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protected NameTypeDesignation preSaveBean(NameTypeDesignation bean) {
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if(!bean.hasDesignationSource()) {
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bean.setSource(null); // this effectively removes the designation reference and reference detail
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}
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// the typifiedNames can only be set on the name side, so we need to
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// handle changes explicitly here
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HashSet<TaxonName> typifiedNames = new HashSet<>(bean.getTypifiedNames());
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// handle adds
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for(TaxonName name : typifiedNames){
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if(name == null){
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throw new NullPointerException("typifiedName must not be null");
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}
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if(!name.getTypeDesignations().contains(bean)){
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name.addTypeDesignation(bean, false);
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}
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}
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// handle removed
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for(TaxonName name : typifiedNamesAsLoaded){
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if(!typifiedNames.contains(name)){
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name.removeTypeDesignation(bean);
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}
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// FIXME do we need to save the names here or is the delete cascaded from the typedesignation to the name?
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}
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// handle annotation changes
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List<Annotation> annotations = getView().getAnnotationsField().getValue();
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List<Annotation> currentAnnotations = new ArrayList<>(bean.getAnnotations());
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List<Annotation> annotationsSeen = new ArrayList<>();
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for(Annotation a : annotations){
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if(a == null){
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continue;
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}
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if(!currentAnnotations.contains(a)){
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bean.addAnnotation(a);
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}
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annotationsSeen.add(a);
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}
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for(Annotation a : currentAnnotations){
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if(!annotationsSeen.contains(a)){
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bean.removeAnnotation(a);
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}
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}
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return bean;
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}
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@EventBusListenerMethod(filter = EditorActionTypeFilter.Add.class)
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public void onTaxonNameEditorActionAdd(TaxonNameEditorAction action){
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if(!isFromOwnView(action)){
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return;
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}
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TaxonNamePopupEditor typeNamePopup = openPopupEditor(TaxonNamePopupEditor.class, action);
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typeNamePopup.grantToCurrentUser(EnumSet.of(CRUD.UPDATE, CRUD.DELETE));
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typeNamePopup.withDeleteButton(true);
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TaxonNamePopupEditorConfig.configure(typeNamePopup);
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typeNamePopup.loadInEditor(null);
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}
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@EventBusListenerMethod(filter = EditorActionTypeFilter.Edit.class)
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public void onTaxonNameEditorActionEdit(TaxonNameEditorAction action){
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if(!isFromOwnView(action)){
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return;
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}
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TaxonNamePopupEditor typeNamePopup = openPopupEditor(TaxonNamePopupEditor.class, action);
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typeNamePopup.grantToCurrentUser(EnumSet.of(CRUD.UPDATE, CRUD.DELETE));
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typeNamePopup.withDeleteButton(true);
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TaxonNamePopupEditorConfig.configure(typeNamePopup);
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typeNamePopup.loadInEditor(action.getEntityUuid());
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}
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@EventBusListenerMethod(filter = EditorActionTypeFilter.Add.class)
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public void onReferenceEditorActionAdd(ReferenceEditorAction event) {
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if (getView() == null || event.getSourceView() != getView()) {
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return;
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}
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ReferencePopupEditor referenceEditorPopup = openPopupEditor(ReferencePopupEditor.class, event);
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referenceEditorPopup.grantToCurrentUser(EnumSet.of(CRUD.UPDATE, CRUD.DELETE));
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referenceEditorPopup.withDeleteButton(true);
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RegistrationUiReferenceEditorFormConfigurator
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.create(newReferenceInstantiator != null)
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.configure(referenceEditorPopup, newReferenceInstantiator);
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referenceEditorPopup.loadInEditor(null);
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}
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@EventBusListenerMethod(filter = EditorActionTypeFilter.Edit.class)
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public void onReferenceEditorActionEdit(ReferenceEditorAction event) {
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if (!isFromOwnView(event)) {
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return;
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}
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ReferencePopupEditor referenceEditorPopup = openPopupEditor(ReferencePopupEditor.class, event);
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referenceEditorPopup.withDeleteButton(true);
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// TODO this should be configurable per UI -
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// RegistrationUiReferenceEditorFormConfigurator as spring bean,
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// different spring profiles
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// see also similar methods in TaxonName and SpecimenTypeDesigationEditors
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RegistrationUiReferenceEditorFormConfigurator
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.create(newReferenceInstantiator != null)
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393
|
.configure(referenceEditorPopup, newReferenceInstantiator);
|
394
|
referenceEditorPopup.loadInEditor(event.getEntityUuid());
|
395
|
}
|
396
|
|
397
|
@EventBusListenerMethod
|
398
|
public void onEntityChangeEvent(EntityChangeEvent<?>event){
|
399
|
|
400
|
BoundField boundTargetField = boundTargetField((PopupView) event.getSourceView());
|
401
|
|
402
|
if(boundTargetField != null){
|
403
|
if(boundTargetField.matchesPropertyIdPath("typeName")){
|
404
|
if(event.isCreateOrModifiedType()){
|
405
|
getCache().load(event.getEntity());
|
406
|
if(event.isCreatedType()){
|
407
|
getView().getTypeNameField().setValue((TaxonName) event.getEntity());
|
408
|
} else {
|
409
|
getView().getTypeNameField().reload();
|
410
|
}
|
411
|
}
|
412
|
if(event.isRemovedType()){
|
413
|
getView().getTypeNameField().selectNewItem(null);
|
414
|
}
|
415
|
|
416
|
}
|
417
|
}
|
418
|
}
|
419
|
|
420
|
/**
|
421
|
* @return
|
422
|
* the {@link #publishedUnit}
|
423
|
*/
|
424
|
public NamedSourceBase getPublishedUnit() {
|
425
|
return publishedUnit;
|
426
|
}
|
427
|
|
428
|
/**
|
429
|
* @param publishedUnit
|
430
|
* The unit of publication in which the type designation has been published.
|
431
|
* This may be any type listed in {@link RegistrationUIDefaults#NOMECLATURAL_PUBLICATION_UNIT_TYPES}
|
432
|
*/
|
433
|
protected void setPublishedUnit(NamedSourceBase publishedUnit) throws Exception {
|
434
|
if(publishedUnit == null) {
|
435
|
throw new NullPointerException();
|
436
|
}
|
437
|
if(publishedUnit.getCitation() == null) {
|
438
|
throw new NullPointerException("The citation of the published unit must not be null.");
|
439
|
}
|
440
|
if(!RegistrationUIDefaults.NOMECLATURAL_PUBLICATION_UNIT_TYPES.contains(publishedUnit.getCitation().getType())) {
|
441
|
throw new Exception("The referrence type '" + publishedUnit.getType() + "'is not allowed for publishedUnit.");
|
442
|
}
|
443
|
this.publishedUnit = publishedUnit;
|
444
|
}
|
445
|
|
446
|
}
|