|
1
|
/**
|
|
2
|
* Copyright (C) 2017 EDIT
|
|
3
|
* European Distributed Institute of Taxonomy
|
|
4
|
* http://www.e-taxonomy.eu
|
|
5
|
*
|
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
8
|
*/
|
|
9
|
package eu.etaxonomy.cdm.vaadin.util.converter;
|
|
10
|
|
|
11
|
import java.util.ArrayList;
|
|
12
|
import java.util.Collection;
|
|
13
|
import java.util.Collections;
|
|
14
|
import java.util.Comparator;
|
|
15
|
import java.util.HashMap;
|
|
16
|
import java.util.LinkedHashMap;
|
|
17
|
import java.util.LinkedList;
|
|
18
|
import java.util.List;
|
|
19
|
import java.util.Map;
|
|
20
|
import java.util.Optional;
|
|
21
|
import java.util.Set;
|
|
22
|
|
|
23
|
import eu.etaxonomy.cdm.api.facade.DerivedUnitFacadeCacheStrategy;
|
|
24
|
import eu.etaxonomy.cdm.model.common.CdmBase;
|
|
25
|
import eu.etaxonomy.cdm.model.common.Language;
|
|
26
|
import eu.etaxonomy.cdm.model.name.NameTypeDesignation;
|
|
27
|
import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;
|
|
28
|
import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;
|
|
29
|
import eu.etaxonomy.cdm.model.name.TaxonName;
|
|
30
|
import eu.etaxonomy.cdm.model.name.TypeDesignationBase;
|
|
31
|
import eu.etaxonomy.cdm.model.name.TypeDesignationStatusBase;
|
|
32
|
import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;
|
|
33
|
import eu.etaxonomy.cdm.model.occurrence.FieldUnit;
|
|
34
|
import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;
|
|
35
|
import eu.etaxonomy.cdm.vaadin.model.EntityReference;
|
|
36
|
import eu.etaxonomy.cdm.vaadin.model.TypedEntityReference;
|
|
37
|
import eu.etaxonomy.cdm.vaadin.view.registration.RegistrationValidationException;
|
|
38
|
|
|
39
|
/**
|
|
40
|
* Converts a collection of TypeDesignations, which should belong to the
|
|
41
|
* same name of course, into a string representation.
|
|
42
|
*
|
|
43
|
* Order of TypeDesignations in the resulting string:
|
|
44
|
* Type, Holotype, Lectotype, Epitypes
|
|
45
|
* @author a.kohlbecker
|
|
46
|
* @since Mar 10, 2017
|
|
47
|
*
|
|
48
|
*/
|
|
49
|
public class TypeDesignationConverter {
|
|
50
|
|
|
51
|
|
|
52
|
private static final String TYPE_STATUS_SEPARATOR = "; ";
|
|
53
|
|
|
54
|
private static final String TYPE_SEPARATOR = "; ";
|
|
55
|
|
|
56
|
private static final String TYPE_DESIGNATION_SEPARATOR = ", ";
|
|
57
|
|
|
58
|
private Collection<TypeDesignationBase> typeDesignations;
|
|
59
|
|
|
60
|
private int workingSetIdAutoIncrement = 0;
|
|
61
|
|
|
62
|
/**
|
|
63
|
* Groups the EntityReferences for each of the TypeDesignations by the according TypeDesignationStatus.
|
|
64
|
* The TypeDesignationStatusBase keys are already ordered by the term order defined in the vocabulary.
|
|
65
|
*/
|
|
66
|
private LinkedHashMap<TypedEntityReference, TypeDesignationWorkingSet> orderedByTypesByBaseEntity;
|
|
67
|
|
|
68
|
|
|
69
|
private EntityReference typifiedName;
|
|
70
|
|
|
71
|
private String finalString = null;
|
|
72
|
|
|
73
|
/**
|
|
74
|
* @param taxonName
|
|
75
|
* @throws RegistrationValidationException
|
|
76
|
*
|
|
77
|
*/
|
|
78
|
public TypeDesignationConverter(CdmBase containgEntity, Collection<TypeDesignationBase> typeDesignations) throws RegistrationValidationException {
|
|
79
|
this.typeDesignations = typeDesignations;
|
|
80
|
Map<TypedEntityReference, TypeDesignationWorkingSet> byBaseEntityByTypeStatus = new HashMap<>();
|
|
81
|
typeDesignations.forEach(td -> mapTypeDesignation(containgEntity, byBaseEntityByTypeStatus, td));
|
|
82
|
orderedByTypesByBaseEntity = orderByTypeByBaseEntity(byBaseEntityByTypeStatus);
|
|
83
|
this.typifiedName = findTypifiedName();
|
|
84
|
}
|
|
85
|
|
|
86
|
|
|
87
|
private void mapTypeDesignation(CdmBase containgEntity, Map<TypedEntityReference, TypeDesignationWorkingSet> byBaseEntityByTypeStatus,
|
|
88
|
TypeDesignationBase<?> td){
|
|
89
|
|
|
90
|
TypeDesignationStatusBase<?> status = td.getTypeStatus();
|
|
91
|
|
|
92
|
final TypedEntityReference baseEntityReference = baseEntityReference(td);
|
|
93
|
|
|
94
|
EntityReference typeDesignationEntityReference = new EntityReference(td.getId(), stringify(td));
|
|
95
|
|
|
96
|
TypeDesignationWorkingSet typedesignationWorkingSet;
|
|
97
|
if(!byBaseEntityByTypeStatus.containsKey(baseEntityReference)){
|
|
98
|
TypedEntityReference containigEntityReference = new TypedEntityReference(containgEntity.getClass(), containgEntity.getId(), containgEntity.toString());
|
|
99
|
byBaseEntityByTypeStatus.put(baseEntityReference, new TypeDesignationWorkingSet(containigEntityReference, baseEntityReference));
|
|
100
|
}
|
|
101
|
|
|
102
|
typedesignationWorkingSet = byBaseEntityByTypeStatus.get(baseEntityReference);
|
|
103
|
typedesignationWorkingSet.insert(status, typeDesignationEntityReference);
|
|
104
|
}
|
|
105
|
|
|
106
|
/**
|
|
107
|
* @param td
|
|
108
|
* @return
|
|
109
|
*/
|
|
110
|
protected TypedEntityReference baseEntityReference(TypeDesignationBase<?> td) {
|
|
111
|
|
|
112
|
CdmBase baseEntity = null;
|
|
113
|
String label = "";
|
|
114
|
if(td instanceof SpecimenTypeDesignation){
|
|
115
|
SpecimenTypeDesignation std = (SpecimenTypeDesignation) td;
|
|
116
|
FieldUnit fu = findFieldUnit(std);
|
|
117
|
if(fu != null){
|
|
118
|
baseEntity = fu;
|
|
119
|
label = fu.getTitleCache();
|
|
120
|
} else if(((SpecimenTypeDesignation) td).getTypeSpecimen() != null){
|
|
121
|
baseEntity = ((SpecimenTypeDesignation) td).getTypeSpecimen();
|
|
122
|
label = ""; // empty label to avoid repeating the DerivedUnit details
|
|
123
|
}
|
|
124
|
} else if(td instanceof NameTypeDesignation){
|
|
125
|
baseEntity = ((NameTypeDesignation)td).getTypeName();
|
|
126
|
label = "";
|
|
127
|
}
|
|
128
|
if(baseEntity == null) {
|
|
129
|
baseEntity = td;
|
|
130
|
label = "INCOMPLETE DATA";
|
|
131
|
}
|
|
132
|
|
|
133
|
TypedEntityReference baseEntityReference = new TypedEntityReference(baseEntity.getClass(), baseEntity.getId(), label);
|
|
134
|
|
|
135
|
return baseEntityReference;
|
|
136
|
}
|
|
137
|
|
|
138
|
|
|
139
|
private LinkedHashMap<TypedEntityReference, TypeDesignationWorkingSet> orderByTypeByBaseEntity(
|
|
140
|
Map<TypedEntityReference, TypeDesignationWorkingSet> stringsByTypeByBaseEntity){
|
|
141
|
|
|
142
|
// order the FieldUnit TypeName keys
|
|
143
|
List<TypedEntityReference> baseEntityKeyList = new LinkedList<>(stringsByTypeByBaseEntity.keySet());
|
|
144
|
Collections.sort(baseEntityKeyList, new Comparator<TypedEntityReference>(){
|
|
145
|
/**
|
|
146
|
* Sorts the base entitoes (TypedEntityReference) in nthe following order:
|
|
147
|
*
|
|
148
|
* 1. FieldUnits
|
|
149
|
* 2. DerivedUnit (in case of missing FieldUnit we expect the base type to be DerivedUnit)
|
|
150
|
* 3. NameType
|
|
151
|
*
|
|
152
|
* {@inheritDoc}
|
|
153
|
*/
|
|
154
|
@Override
|
|
155
|
public int compare(TypedEntityReference o1, TypedEntityReference o2) {
|
|
156
|
if(!o1.getType().equals(o2.getType())) {
|
|
157
|
if(o1.equals(FieldUnit.class) || o2.equals(FieldUnit.class)){
|
|
158
|
// FieldUnits first
|
|
159
|
return o1.getType().equals(FieldUnit.class) ? -1 : 1;
|
|
160
|
} else {
|
|
161
|
// name types last (in case of missing FieldUnit we expect the base type to be DerivedUnit which comes into the middle)
|
|
162
|
return o2.getType().equals(TaxonName.class) ? -1 : 1;
|
|
163
|
}
|
|
164
|
} else {
|
|
165
|
return o1.getLabel().compareTo(o2.getLabel());
|
|
166
|
}
|
|
167
|
}});
|
|
168
|
|
|
169
|
// new LinkedHashMap for the ordered FieldUnitOrTypeName keys
|
|
170
|
LinkedHashMap<TypedEntityReference, TypeDesignationWorkingSet> stringsOrderedbyBaseEntityOrderdByType = new LinkedHashMap<>(stringsByTypeByBaseEntity.size());
|
|
171
|
|
|
172
|
for(TypedEntityReference baseEntityRef : baseEntityKeyList){
|
|
173
|
|
|
174
|
TypeDesignationWorkingSet typeDesignationWorkingSet = stringsByTypeByBaseEntity.get(baseEntityRef);
|
|
175
|
// order the TypeDesignationStatusBase keys
|
|
176
|
List<TypeDesignationStatusBase<?>> keyList = new LinkedList<>(typeDesignationWorkingSet.keySet());
|
|
177
|
Collections.sort(keyList, new Comparator<TypeDesignationStatusBase>() {
|
|
178
|
@SuppressWarnings("unchecked")
|
|
179
|
@Override
|
|
180
|
public int compare(TypeDesignationStatusBase o1, TypeDesignationStatusBase o2) {
|
|
181
|
// fix inverted order of cdm terms by -1*
|
|
182
|
return -1 * o1.compareTo(o2);
|
|
183
|
}
|
|
184
|
});
|
|
185
|
// new LinkedHashMap for the ordered TypeDesignationStatusBase keys
|
|
186
|
TypeDesignationWorkingSet orderedStringsByOrderedTypes = new TypeDesignationWorkingSet(typeDesignationWorkingSet.getContainigEntityReference(), baseEntityRef);
|
|
187
|
orderedStringsByOrderedTypes.setWorkingSetId(typeDesignationWorkingSet.workingSetId); // preserve original workingSetId
|
|
188
|
keyList.forEach(key -> orderedStringsByOrderedTypes.put(key, typeDesignationWorkingSet.get(key)));
|
|
189
|
stringsOrderedbyBaseEntityOrderdByType.put(baseEntityRef, orderedStringsByOrderedTypes);
|
|
190
|
}
|
|
191
|
|
|
192
|
return stringsOrderedbyBaseEntityOrderdByType;
|
|
193
|
}
|
|
194
|
|
|
195
|
/*
|
|
196
|
private LinkedHashMap<TypedEntityReference, LinkedHashMap<String, Collection<EntityReference>>> buildOrderedRepresentations(){
|
|
197
|
|
|
198
|
orderedStringsByOrderedTypes.keySet().forEach(
|
|
199
|
key -> orderedRepresentations.put(
|
|
200
|
getTypeDesignationStytusLabel(key),
|
|
201
|
orderedStringsByOrderedTypes.get(key))
|
|
202
|
);
|
|
203
|
return orderedRepresentations;
|
|
204
|
}
|
|
205
|
*/
|
|
206
|
|
|
207
|
public TypeDesignationConverter buildString(){
|
|
208
|
|
|
209
|
if(finalString == null){
|
|
210
|
|
|
211
|
finalString = "";
|
|
212
|
if(getTypifiedNameCache() != null){
|
|
213
|
finalString += getTypifiedNameCache() + " ";
|
|
214
|
}
|
|
215
|
|
|
216
|
int typeCount = 0;
|
|
217
|
for(TypedEntityReference baseEntityRef : orderedByTypesByBaseEntity.keySet()) {
|
|
218
|
StringBuilder sb = new StringBuilder();
|
|
219
|
if(typeCount++ > 0){
|
|
220
|
sb.append(TYPE_SEPARATOR);
|
|
221
|
}
|
|
222
|
boolean isNameTypeDesignation = false;
|
|
223
|
if(SpecimenOrObservationBase.class.isAssignableFrom(baseEntityRef.getType())){
|
|
224
|
sb.append("Type: ");
|
|
225
|
} else {
|
|
226
|
sb.append("NameType: ");
|
|
227
|
isNameTypeDesignation = true;
|
|
228
|
}
|
|
229
|
if(!baseEntityRef.getLabel().isEmpty()){
|
|
230
|
sb.append(baseEntityRef.getLabel()).append(" ");
|
|
231
|
}
|
|
232
|
TypeDesignationWorkingSet typeDesignationWorkingSet = orderedByTypesByBaseEntity.get(baseEntityRef);
|
|
233
|
if(!isNameTypeDesignation ){
|
|
234
|
sb.append("(");
|
|
235
|
}
|
|
236
|
int typeStatusCount = 0;
|
|
237
|
for(TypeDesignationStatusBase<?> typeStatus : typeDesignationWorkingSet.keySet()) {
|
|
238
|
if(typeStatusCount++ > 0){
|
|
239
|
sb.append(TYPE_STATUS_SEPARATOR);
|
|
240
|
}
|
|
241
|
boolean isPlural = typeDesignationWorkingSet.get(typeStatus).size() > 1;
|
|
242
|
sb.append(typeStatus.getLabel());
|
|
243
|
if(isPlural){
|
|
244
|
sb.append("s: ");
|
|
245
|
} else {
|
|
246
|
sb.append(", ");
|
|
247
|
}
|
|
248
|
int typeDesignationCount = 0;
|
|
249
|
for(EntityReference typeDesignationEntityReference : typeDesignationWorkingSet.get(typeStatus)) {
|
|
250
|
if(typeDesignationCount++ > 0){
|
|
251
|
sb.append(TYPE_DESIGNATION_SEPARATOR);
|
|
252
|
}
|
|
253
|
sb.append(typeDesignationEntityReference.getLabel());
|
|
254
|
}
|
|
255
|
}
|
|
256
|
if(!isNameTypeDesignation ){
|
|
257
|
sb.append(")");
|
|
258
|
}
|
|
259
|
typeDesignationWorkingSet.setRepresentation(sb.toString());
|
|
260
|
finalString += typeDesignationWorkingSet.getRepresentation();
|
|
261
|
}
|
|
262
|
|
|
263
|
}
|
|
264
|
return this;
|
|
265
|
}
|
|
266
|
|
|
267
|
/**
|
|
268
|
* FIXME use the validation framework validators and to store the validation problems!!!
|
|
269
|
*
|
|
270
|
* @return
|
|
271
|
* @throws RegistrationValidationException
|
|
272
|
*/
|
|
273
|
private EntityReference findTypifiedName() throws RegistrationValidationException {
|
|
274
|
|
|
275
|
List<String> problems = new ArrayList<>();
|
|
276
|
|
|
277
|
TaxonName typifiedName = null;
|
|
278
|
|
|
279
|
for(TypeDesignationBase<?> typeDesignation : typeDesignations){
|
|
280
|
typeDesignation.getTypifiedNames();
|
|
281
|
if(typeDesignation.getTypifiedNames().isEmpty()){
|
|
282
|
|
|
283
|
//TODO instead throw RegistrationValidationException()
|
|
284
|
problems.add("Missing typifiedName in " + typeDesignation.toString());
|
|
285
|
continue;
|
|
286
|
}
|
|
287
|
if(typeDesignation.getTypifiedNames().size() > 1){
|
|
288
|
//TODO instead throw RegistrationValidationException()
|
|
289
|
problems.add("Multiple typifiedName in " + typeDesignation.toString());
|
|
290
|
continue;
|
|
291
|
}
|
|
292
|
if(typifiedName == null){
|
|
293
|
// remember
|
|
294
|
typifiedName = typeDesignation.getTypifiedNames().iterator().next();
|
|
295
|
} else {
|
|
296
|
// compare
|
|
297
|
TaxonName otherTypifiedName = typeDesignation.getTypifiedNames().iterator().next();
|
|
298
|
if(typifiedName.getId() != otherTypifiedName.getId()){
|
|
299
|
//TODO instead throw RegistrationValidationException()
|
|
300
|
problems.add("Multiple typifiedName in " + typeDesignation.toString());
|
|
301
|
}
|
|
302
|
}
|
|
303
|
|
|
304
|
}
|
|
305
|
if(!problems.isEmpty()){
|
|
306
|
// FIXME use the validation framework
|
|
307
|
throw new RegistrationValidationException("Inconsistent type designations", problems);
|
|
308
|
}
|
|
309
|
|
|
310
|
if(typifiedName != null){
|
|
311
|
return new EntityReference(typifiedName.getId(), typifiedName.getTitleCache());
|
|
312
|
}
|
|
313
|
return null;
|
|
314
|
}
|
|
315
|
|
|
316
|
|
|
317
|
/**
|
|
318
|
* @return the title cache of the typifying name or <code>null</code>
|
|
319
|
*/
|
|
320
|
public String getTypifiedNameCache() {
|
|
321
|
if(typifiedName != null){
|
|
322
|
return typifiedName.getLabel();
|
|
323
|
}
|
|
324
|
return null;
|
|
325
|
}
|
|
326
|
|
|
327
|
/**
|
|
328
|
* @return the title cache of the typifying name or <code>null</code>
|
|
329
|
*/
|
|
330
|
public EntityReference getTypifiedName() {
|
|
331
|
|
|
332
|
return typifiedName;
|
|
333
|
}
|
|
334
|
|
|
335
|
/**
|
|
336
|
* @return
|
|
337
|
*/
|
|
338
|
public Collection<TypeDesignationBase> getTypeDesignations() {
|
|
339
|
return typeDesignations;
|
|
340
|
}
|
|
341
|
|
|
342
|
/**
|
|
343
|
* @param ref
|
|
344
|
* @return
|
|
345
|
*/
|
|
346
|
public TypeDesignationBase findTypeDesignation(EntityReference typeDesignationRef) {
|
|
347
|
for(TypeDesignationBase td : typeDesignations){
|
|
348
|
if(td.getId() == typeDesignationRef.getId()){
|
|
349
|
return td;
|
|
350
|
}
|
|
351
|
}
|
|
352
|
// TODO Auto-generated method stub
|
|
353
|
return null;
|
|
354
|
}
|
|
355
|
|
|
356
|
|
|
357
|
public LinkedHashMap<TypedEntityReference, TypeDesignationWorkingSet> getOrderdTypeDesignationWorkingSets() {
|
|
358
|
return orderedByTypesByBaseEntity;
|
|
359
|
}
|
|
360
|
|
|
361
|
|
|
362
|
|
|
363
|
/**
|
|
364
|
* @param key
|
|
365
|
* @return
|
|
366
|
*/
|
|
367
|
protected String getTypeDesignationStytusLabel(TypeDesignationStatusBase<?> key) {
|
|
368
|
String typeLable;
|
|
369
|
if(key.equals( SpecimenTypeDesignationStatus.TYPE())){
|
|
370
|
typeLable = "Type";
|
|
371
|
} else {
|
|
372
|
typeLable = key.getPreferredRepresentation(Language.DEFAULT()).getLabel();
|
|
373
|
}
|
|
374
|
return typeLable;
|
|
375
|
}
|
|
376
|
|
|
377
|
/**
|
|
378
|
* @param td
|
|
379
|
* @return
|
|
380
|
*/
|
|
381
|
private String stringify(TypeDesignationBase td) {
|
|
382
|
|
|
383
|
if(td instanceof NameTypeDesignation){
|
|
384
|
return stringify((NameTypeDesignation)td);
|
|
385
|
} else {
|
|
386
|
return stringify((SpecimenTypeDesignation)td, false);
|
|
387
|
}
|
|
388
|
}
|
|
389
|
|
|
390
|
|
|
391
|
/**
|
|
392
|
* @param td
|
|
393
|
* @return
|
|
394
|
*/
|
|
395
|
protected String stringify(NameTypeDesignation td) {
|
|
396
|
|
|
397
|
StringBuffer sb = new StringBuffer();
|
|
398
|
|
|
399
|
if(td.getTypeName() != null){
|
|
400
|
sb.append(td.getTypeName().getTitleCache());
|
|
401
|
}
|
|
402
|
if(td.getCitation() != null){
|
|
403
|
sb.append(" ").append(td.getCitation().getTitleCache());
|
|
404
|
if(td.getCitationMicroReference() != null){
|
|
405
|
sb.append(":").append(td.getCitationMicroReference());
|
|
406
|
}
|
|
407
|
}
|
|
408
|
if(td.isNotDesignated()){
|
|
409
|
sb.append(" not designated");
|
|
410
|
}
|
|
411
|
if(td.isRejectedType()){
|
|
412
|
sb.append(" rejected");
|
|
413
|
}
|
|
414
|
if(td.isConservedType()){
|
|
415
|
sb.append(" conserved");
|
|
416
|
}
|
|
417
|
return sb.toString();
|
|
418
|
}
|
|
419
|
|
|
420
|
/**
|
|
421
|
* @param td
|
|
422
|
* @return
|
|
423
|
*/
|
|
424
|
private String stringify(SpecimenTypeDesignation td, boolean useFullTitleCache) {
|
|
425
|
String result = "";
|
|
426
|
|
|
427
|
if(useFullTitleCache){
|
|
428
|
if(td.getTypeSpecimen() != null){
|
|
429
|
String nameTitleCache = td.getTypeSpecimen().getTitleCache();
|
|
430
|
if(getTypifiedNameCache() != null){
|
|
431
|
nameTitleCache = nameTitleCache.replace(getTypifiedNameCache(), "");
|
|
432
|
}
|
|
433
|
result += nameTitleCache;
|
|
434
|
}
|
|
435
|
} else {
|
|
436
|
if(td.getTypeSpecimen() != null){
|
|
437
|
DerivedUnit du = td.getTypeSpecimen();
|
|
438
|
if(du.isProtectedTitleCache()){
|
|
439
|
result += du.getTitleCache();
|
|
440
|
} else {
|
|
441
|
DerivedUnitFacadeCacheStrategy cacheStrategy = new DerivedUnitFacadeCacheStrategy();
|
|
442
|
result += cacheStrategy.getTitleCache(du, true);
|
|
443
|
}
|
|
444
|
}
|
|
445
|
}
|
|
446
|
|
|
447
|
if(td.getCitation() != null){
|
|
448
|
result += " " + td.getCitation().getTitleCache();
|
|
449
|
if(td.getCitationMicroReference() != null){
|
|
450
|
result += " :" + td.getCitationMicroReference();
|
|
451
|
}
|
|
452
|
}
|
|
453
|
if(td.isNotDesignated()){
|
|
454
|
result += " not designated";
|
|
455
|
}
|
|
456
|
|
|
457
|
return result;
|
|
458
|
}
|
|
459
|
|
|
460
|
/**
|
|
461
|
* @param td
|
|
462
|
* @return
|
|
463
|
* @deprecated
|
|
464
|
*/
|
|
465
|
@Deprecated
|
|
466
|
private FieldUnit findFieldUnit(SpecimenTypeDesignation td) {
|
|
467
|
|
|
468
|
DerivedUnit du = td.getTypeSpecimen();
|
|
469
|
return findFieldUnit(du);
|
|
470
|
}
|
|
471
|
|
|
472
|
private FieldUnit findFieldUnit(DerivedUnit du) {
|
|
473
|
|
|
474
|
if(du == null || du.getOriginals() == null){
|
|
475
|
return null;
|
|
476
|
}
|
|
477
|
@SuppressWarnings("rawtypes")
|
|
478
|
Set<SpecimenOrObservationBase> originals = du.getDerivedFrom().getOriginals();
|
|
479
|
@SuppressWarnings("rawtypes")
|
|
480
|
Optional<SpecimenOrObservationBase> fieldUnit = originals.stream()
|
|
481
|
.filter(original -> original instanceof FieldUnit).findFirst();
|
|
482
|
if (fieldUnit.isPresent()) {
|
|
483
|
return (FieldUnit) fieldUnit.get();
|
|
484
|
} else {
|
|
485
|
for (@SuppressWarnings("rawtypes")
|
|
486
|
SpecimenOrObservationBase sob : originals) {
|
|
487
|
if (sob instanceof DerivedUnit) {
|
|
488
|
FieldUnit fu = findFieldUnit((DerivedUnit) sob);
|
|
489
|
if (fu != null) {
|
|
490
|
return fu;
|
|
491
|
}
|
|
492
|
}
|
|
493
|
}
|
|
494
|
}
|
|
495
|
|
|
496
|
return null;
|
|
497
|
}
|
|
498
|
|
|
499
|
public String print() {
|
|
500
|
return finalString;
|
|
501
|
}
|
|
502
|
|
|
503
|
/**
|
|
504
|
* Groups the EntityReferences for TypeDesignations by the according TypeDesignationStatus.
|
|
505
|
* The TypeDesignationStatusBase keys can be ordered by the term order defined in the vocabulary.
|
|
506
|
*/
|
|
507
|
public class TypeDesignationWorkingSet extends LinkedHashMap<TypeDesignationStatusBase<?>, Collection<EntityReference>> {
|
|
508
|
|
|
509
|
String workingSetRepresentation = null;
|
|
510
|
|
|
511
|
TypedEntityReference containigEntityReference;
|
|
512
|
|
|
513
|
TypedEntityReference baseEntityReference;
|
|
514
|
|
|
515
|
int workingSetId = workingSetIdAutoIncrement++;
|
|
516
|
|
|
517
|
private static final long serialVersionUID = -1329007606500890729L;
|
|
518
|
|
|
519
|
/**
|
|
520
|
* @param baseEntityReference
|
|
521
|
*/
|
|
522
|
public TypeDesignationWorkingSet(TypedEntityReference containigEntityReference, TypedEntityReference baseEntityReference) {
|
|
523
|
this.containigEntityReference = containigEntityReference;
|
|
524
|
this.baseEntityReference = baseEntityReference;
|
|
525
|
}
|
|
526
|
|
|
527
|
public List<EntityReference> getTypeDesignations() {
|
|
528
|
List<EntityReference> typeDesignations = new ArrayList<>();
|
|
529
|
this.values().forEach(typeDesignationReferences -> typeDesignationReferences.forEach(td -> typeDesignations.add(td)));
|
|
530
|
return typeDesignations;
|
|
531
|
}
|
|
532
|
|
|
533
|
/**
|
|
534
|
* @param status
|
|
535
|
* @param typeDesignationEntityReference
|
|
536
|
*/
|
|
537
|
public void insert(TypeDesignationStatusBase<?> status, EntityReference typeDesignationEntityReference) {
|
|
538
|
|
|
539
|
if(status == null){
|
|
540
|
status = SpecimenTypeDesignationStatus.TYPE();
|
|
541
|
}
|
|
542
|
if(!containsKey(status)){
|
|
543
|
put(status, new ArrayList<EntityReference>());
|
|
544
|
}
|
|
545
|
get(status).add(typeDesignationEntityReference);
|
|
546
|
}
|
|
547
|
|
|
548
|
/**
|
|
549
|
* @return the workingSetId
|
|
550
|
*/
|
|
551
|
public int getWorkingSetId() {
|
|
552
|
return workingSetId;
|
|
553
|
}
|
|
554
|
|
|
555
|
/**
|
|
556
|
* @param workingSetId the workingSetId to set
|
|
557
|
*/
|
|
558
|
public void setWorkingSetId(int workingSetId) {
|
|
559
|
this.workingSetId = workingSetId;
|
|
560
|
}
|
|
561
|
|
|
562
|
public String getRepresentation() {
|
|
563
|
return workingSetRepresentation;
|
|
564
|
}
|
|
565
|
|
|
566
|
public void setRepresentation(String representation){
|
|
567
|
this.workingSetRepresentation = representation;
|
|
568
|
}
|
|
569
|
|
|
570
|
/**
|
|
571
|
* A reference to the entity which is the common base entity for all TypeDesignations in this workingset.
|
|
572
|
* For a {@link SpecimenTypeDesignation} this is usually the {@link FieldUnit} if it is present. Otherwise it can also be
|
|
573
|
* a {@link DerivedUnit} or something else depending on the specific use case.
|
|
574
|
*
|
|
575
|
* @return the baseEntityReference
|
|
576
|
*/
|
|
577
|
public TypedEntityReference getBaseEntityReference() {
|
|
578
|
return baseEntityReference;
|
|
579
|
}
|
|
580
|
|
|
581
|
/**
|
|
582
|
* A reference to the entity which contains the TypeDesignations bundled in this working set.
|
|
583
|
* This can be for example a {@link TaxonName} or a {@link Registration} entity.
|
|
584
|
*
|
|
585
|
* @return the baseEntityReference
|
|
586
|
*/
|
|
587
|
public TypedEntityReference getContainigEntityReference() {
|
|
588
|
return containigEntityReference;
|
|
589
|
}
|
|
590
|
|
|
591
|
@Override
|
|
592
|
public String toString(){
|
|
593
|
if(workingSetRepresentation != null){
|
|
594
|
return workingSetRepresentation;
|
|
595
|
} else {
|
|
596
|
return super.toString();
|
|
597
|
}
|
|
598
|
}
|
|
599
|
|
|
600
|
}
|
|
601
|
|
|
602
|
}
|