EDIT

/**

* Copyright (C) 2017 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.service;

import java.util.Arrays;

import java.util.HashSet;

import java.util.Iterator;

import java.util.List;

import java.util.Set;

import org.hibernate.Session;

import org.jboss.logging.Logger;

import org.springframework.beans.factory.annotation.Autowired;

import org.springframework.beans.factory.annotation.Qualifier;

import org.springframework.stereotype.Service;

import org.springframework.transaction.annotation.Transactional;

import eu.etaxonomy.cdm.api.application.CdmRepository;

import eu.etaxonomy.cdm.api.service.config.SpecimenDeleteConfigurator;

import eu.etaxonomy.cdm.model.common.VersionableEntity;

import eu.etaxonomy.cdm.model.name.Registration;

import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;

import eu.etaxonomy.cdm.model.name.TaxonName;

import eu.etaxonomy.cdm.model.name.TypeDesignationBase;

import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;

import eu.etaxonomy.cdm.model.occurrence.DerivationEventType;

import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;

import eu.etaxonomy.cdm.model.occurrence.FieldUnit;

import eu.etaxonomy.cdm.model.occurrence.GatheringEvent;

import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationBase;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.vaadin.model.TypedEntityReference;

import eu.etaxonomy.cdm.vaadin.model.registration.SpecimenTypeDesignationDTO;

import eu.etaxonomy.cdm.vaadin.model.registration.SpecimenTypeDesignationWorkingSetDTO;

import eu.etaxonomy.cdm.vaadin.util.converter.TypeDesignationSetManager.TypeDesignationWorkingSet;

import eu.etaxonomy.cdm.vaadin.view.name.stdDTOs;

import eu.etaxonomy.cdm.vaadin.view.registration.RegistrationDTO;

/**

 * @author a.kohlbecker

 * @since Nov 13, 2017

 *

 */

@Service("specimenTypeDesignationWorkingSetService")

@Transactional(readOnly=true)

public class SpecimenTypeDesignationWorkingSetServiceImpl implements ISpecimenTypeDesignationWorkingSetService {

    private final Logger logger = Logger.getLogger(SpecimenTypeDesignationWorkingSetServiceImpl.class);

    public static final List<String> TAXON_NAME_INIT_STRATEGY = Arrays.asList(new String []{

            "name.$",

            "name.nomenclaturalReference.authorship",

            "name.nomenclaturalReference.inReference",

            "name.rank",

            "name.status.type",

            "name.typeDesignations"

            }

    );

    @Autowired

    IRegistrationWorkingSetService registrationWorkingSetService;

    @Qualifier("cdmRepository")

    @Autowired

    CdmRepository repo;

    /**

     * {@inheritDoc}

     */

    @Override

    public SpecimenTypeDesignationWorkingSetDTO<Registration> create(int registrationId, int publicationId, int typifiedNameId) {

        FieldUnit newfieldUnit = FieldUnit.NewInstance();

        Registration reg = repo.getRegistrationService().load(registrationId, RegistrationWorkingSetService.REGISTRATION_INIT_STRATEGY);

        TaxonName typifiedName = repo.getNameService().load(typifiedNameId, TAXON_NAME_INIT_STRATEGY);

        Reference citation = repo.getReferenceService().load(publicationId, Arrays.asList("$"));

        SpecimenTypeDesignationWorkingSetDTO<Registration> workingSetDto = new SpecimenTypeDesignationWorkingSetDTO<Registration>(reg, newfieldUnit, citation, typifiedName);

        return workingSetDto;

    }

    /**

     * {@inheritDoc}

     */

    @Override

    @Transactional

    public SpecimenTypeDesignationWorkingSetDTO<Registration> loadDtoByIds(int registrationId, int workingsetId) {

        RegistrationDTO regDTO = registrationWorkingSetService.loadDtoById(registrationId);

        // find the working set

        TypeDesignationWorkingSet typeDesignationWorkingSet = regDTO.getTypeDesignationWorkingSet(workingsetId);

        SpecimenTypeDesignationWorkingSetDTO<Registration> workingSetDto = regDTO.getSpecimenTypeDesignationWorkingSetDTO(typeDesignationWorkingSet.getBaseEntityReference());

        return workingSetDto;

    }

    @Override

    public SpecimenTypeDesignationWorkingSetDTO<Registration> fixMissingFieldUnit(SpecimenTypeDesignationWorkingSetDTO<Registration> bean) {

        if(bean.getFieldUnit() == null){

            // in case the base unit of the working set is not a FieldUnit all contained TypeDesignations must be modified

            // so that they are based on an empty FieldUnit with an associated Gathering Event

            Registration reg = repo.getRegistrationService().find(bean.getOwner().getId());

            RegistrationDTO regDTO = new RegistrationDTO(reg);

            FieldUnit fieldUnit = FieldUnit.NewInstance();

            GatheringEvent gatheringEvent = GatheringEvent.NewInstance();

            fieldUnit.setGatheringEvent(gatheringEvent);

            repo.getOccurrenceService().save(fieldUnit);

            VersionableEntity baseEntity = bean.getBaseEntity();

            Set<TypeDesignationBase> typeDesignations = regDTO.getTypeDesignationsInWorkingSet(

                    new TypedEntityReference(baseEntity.getClass(), baseEntity.getId(), baseEntity.toString())

                    );

            for(TypeDesignationBase td : typeDesignations){

                DerivationEvent de = DerivationEvent.NewInstance();//

                de.addOriginal(fieldUnit);

                de.addDerivative(((SpecimenTypeDesignation)td).getTypeSpecimen());

                de.setType(DerivationEventType.GATHERING_IN_SITU());

            }

            repo.getRegistrationService().saveOrUpdate(reg);

        }

        return bean;

    }

    /**

     * {@inheritDoc}

     */

    @Override

    @Transactional(readOnly=false)

    public void save(SpecimenTypeDesignationWorkingSetDTO<? extends VersionableEntity> dto) {

        if(dto.getOwner() instanceof Registration){

            Registration regPremerge = (Registration) dto.getOwner();

            // find the newly created type designations

            Set<SpecimenTypeDesignation> newTypeDesignations = findNewTypeDesignations((SpecimenTypeDesignationWorkingSetDTO<Registration>) dto);

            FieldUnit fieldUnit = (FieldUnit) dto.getBaseEntity();

            // associate the new typeDesignations with the registration

            for(SpecimenTypeDesignation std : newTypeDesignations){

                assureFieldUnit(fieldUnit, std);

                std.setCitation(dto.getCitation());

                dto.getTypifiedName().addTypeDesignation(std, false);

                regPremerge.addTypeDesignation(std);

            }

            for(SpecimenTypeDesignationDTO stdDTO : dto.getSpecimenTypeDesignationDTOs()){

                SpecimenTypeDesignation specimenTypeDesignation = stdDTO.asSpecimenTypeDesignation();

                // associate all type designations with the fieldUnit

                assureFieldUnit(fieldUnit, specimenTypeDesignation);

            }

            Session session = repo.getSession();

//            PersistentContextAnalyzer regAnalyzer = new PersistentContextAnalyzer(dto.getOwner(), session);

//            regAnalyzer.printEntityGraph(System.out);

//            regAnalyzer.printCopyEntities(System.out);

            session.merge(dto.getOwner());

            session.flush();

            // ------------------------ perform delete of removed SpecimenTypeDesignations

            SpecimenDeleteConfigurator specimenDeleteConfigurer = new SpecimenDeleteConfigurator();

            specimenDeleteConfigurer.setDeleteChildren(false);

            specimenDeleteConfigurer.setDeleteFromDescription(true);

            specimenDeleteConfigurer.setDeleteFromIndividualsAssociation(true);

            specimenDeleteConfigurer.setDeleteFromTypeDesignation(true);

            specimenDeleteConfigurer.setDeleteMolecularData(true);

            for(SpecimenTypeDesignation std : dto.deletedSpecimenTypeDesignations()){

                DerivedUnit du = std.getTypeSpecimen();

                du.removeSpecimenTypeDesignation(std);

                DerivationEvent derivationEvent = du.getDerivedFrom();

                derivationEvent.removeDerivative(du);

                repo.getNameService().deleteTypeDesignation(dto.getTypifiedName(), std);

                repo.getOccurrenceService().delete(du, specimenDeleteConfigurer);

//                if(derivationEvent.getDerivatives().size() == 0){

//                    getRepo().getEventBaseService().delete(derivationEvent);

//                }

            }

            // -------------------------

        }

    }

    /**

     * @param session

     * @param fieldUnit

     * @param specimenTypeDesignation

     */

    protected void assureFieldUnit(FieldUnit fieldUnit,

            SpecimenTypeDesignation specimenTypeDesignation) {

        try {

            SpecimenOrObservationBase<?> original = findEarliestOriginal(specimenTypeDesignation.getTypeSpecimen());

            if(original instanceof DerivedUnit){

                DerivedUnit du = (DerivedUnit)original;

                du.getDerivedFrom().addOriginal(fieldUnit);

            }

        } catch (Exception e) {

            // has more than one originals !!!

            logger.error(e);

        }

    }

    /**

     * @param std

     * @return

     * @throws Exception

     */

    private SpecimenOrObservationBase<?> findEarliestOriginal(DerivedUnit du) throws Exception {

        SpecimenOrObservationBase original = du;

        while(du != null && du.getDerivedFrom() != null && !du.getDerivedFrom().getOriginals().isEmpty()) {

            Iterator<SpecimenOrObservationBase> it = du.getDerivedFrom().getOriginals().iterator();

            SpecimenOrObservationBase nextOriginal = it.next();

            if(nextOriginal == null){

                break;

            }

            original = nextOriginal;

            if(original instanceof DerivedUnit){

                du = (DerivedUnit)original;

            } else {

                // so this must be a FieldUnit,

               break;

            }

            if(it.hasNext()){

                throw new Exception(String.format("%s has more than one originals", du.toString()));

            }

        }

        return original;

    }

    private Set<SpecimenTypeDesignation> findNewTypeDesignations(SpecimenTypeDesignationWorkingSetDTO<Registration> workingSetDto) {

        Registration reg = workingSetDto.getOwner();

        Set<SpecimenTypeDesignation> addCandidates = new HashSet<>();

        for(SpecimenTypeDesignationDTO stdDTO : workingSetDto.getSpecimenTypeDesignationDTOs()){

            SpecimenTypeDesignation std = stdDTO.asSpecimenTypeDesignation();

            if(reg.getTypeDesignations().isEmpty() || !reg.getTypeDesignations().stream().filter(td -> td.equals(std)).findFirst().isPresent()){

                addCandidates.add(std);

            }

        }

        return addCandidates;

    }

    /**

     * {@inheritDoc}

     */

    @Override

    public void delete(SpecimenTypeDesignationWorkingSetDTO bean) {

        for(stdDTOs : bean.getSpecimenTypeDesignationDTOs()){

                }

    }

}