EDIT

/**

* Copyright (C) 2017 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.vaadin.util.converter;

import static org.junit.Assert.assertEquals;

import static org.junit.Assert.assertNotNull;

import java.util.ArrayList;

import java.util.Collection;

import java.util.Iterator;

import java.util.LinkedHashMap;

import java.util.List;

import java.util.Map;

import org.apache.log4j.Logger;

import org.junit.Test;

import eu.etaxonomy.cdm.model.name.NameTypeDesignation;

import eu.etaxonomy.cdm.model.name.Rank;

import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignation;

import eu.etaxonomy.cdm.model.name.SpecimenTypeDesignationStatus;

import eu.etaxonomy.cdm.model.name.TaxonName;

import eu.etaxonomy.cdm.model.name.TaxonNameFactory;

import eu.etaxonomy.cdm.model.name.TypeDesignationBase;

import eu.etaxonomy.cdm.model.name.TypeDesignationStatusBase;

import eu.etaxonomy.cdm.model.occurrence.DerivationEvent;

import eu.etaxonomy.cdm.model.occurrence.DerivedUnit;

import eu.etaxonomy.cdm.model.occurrence.FieldUnit;

import eu.etaxonomy.cdm.model.occurrence.SpecimenOrObservationType;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

import eu.etaxonomy.cdm.vaadin.CdmVaadinBaseTest;

import eu.etaxonomy.cdm.vaadin.model.EntityReference;

import eu.etaxonomy.cdm.vaadin.model.TypedEntityReference;

import eu.etaxonomy.cdm.vaadin.util.converter.TypeDesignationConverter.TypeDesignationWorkingSet;

import eu.etaxonomy.cdm.vaadin.view.registration.RegistrationValidationException;

/**

 * @author a.kohlbecker

 * @since Mar 10, 2017

 *

 */

public class TypeDesignationConverterTest extends CdmVaadinBaseTest{

    @Test

    public void test1() throws RegistrationValidationException{

        TaxonName typifiedName = TaxonNameFactory.NewBacterialInstance(Rank.SPECIES());

        typifiedName.setTitleCache("Prionus coriatius L.", true);

        NameTypeDesignation ntd = NameTypeDesignation.NewInstance();

        ntd.setId(1);

        TaxonName typeName = TaxonNameFactory.NewBacterialInstance(Rank.SPECIES());

        typeName.setTitleCache("Prionus L.", true);

        ntd.setTypeName(typeName);

        Reference citation = ReferenceFactory.newGeneric();

        citation.setTitleCache("Species Platarum", true);

        ntd.setCitation(citation);

        typifiedName.addTypeDesignation(ntd, false);

        FieldUnit fu_1 = FieldUnit.NewInstance();

        fu_1.setId(1);

        fu_1.setTitleCache("Testland, near Bughausen, A.Kohlbecker 81989, 2017", true);

        FieldUnit fu_2 = FieldUnit.NewInstance();

        fu_2.setId(2);

        fu_2.setTitleCache("Dreamland, near Kissingen, A.Kohlbecker 66211, 2017", true);

        SpecimenTypeDesignation std_HT = SpecimenTypeDesignation.NewInstance();

        std_HT.setId(1);

        DerivedUnit specimen_HT = DerivedUnit.NewInstance(SpecimenOrObservationType.PreservedSpecimen);

        specimen_HT.setTitleCache("OHA", true);

        DerivationEvent derivationEvent_1 = DerivationEvent.NewInstance();

        derivationEvent_1.addOriginal(fu_1);

        derivationEvent_1.addDerivative(specimen_HT);

        specimen_HT.getOriginals().add(fu_1);

        std_HT.setTypeSpecimen(specimen_HT);

        std_HT.setTypeStatus(SpecimenTypeDesignationStatus.HOLOTYPE());

        typifiedName.addTypeDesignation(std_HT, false);

        SpecimenTypeDesignation std_IT = SpecimenTypeDesignation.NewInstance();

        std_IT.setId(2);

        DerivedUnit specimen_IT = DerivedUnit.NewInstance(SpecimenOrObservationType.PreservedSpecimen);

        specimen_IT.setTitleCache("BER", true);

        DerivationEvent derivationEvent_2 = DerivationEvent.NewInstance();

        derivationEvent_2.addOriginal(fu_1);

        derivationEvent_2.addDerivative(specimen_IT);

        std_IT.setTypeSpecimen(specimen_IT);

        std_IT.setTypeStatus(SpecimenTypeDesignationStatus.ISOTYPE());

        typifiedName.addTypeDesignation(std_IT, false);

        SpecimenTypeDesignation std_IT_2 = SpecimenTypeDesignation.NewInstance();

        std_IT_2.setId(3);

        DerivedUnit specimen_IT_2 = DerivedUnit.NewInstance(SpecimenOrObservationType.PreservedSpecimen);

        specimen_IT_2.setTitleCache("KEW", true);

        DerivationEvent derivationEvent_3 = DerivationEvent.NewInstance();

        derivationEvent_3.addOriginal(fu_1);

        derivationEvent_3.addDerivative(specimen_IT_2);

        std_IT_2.setTypeSpecimen(specimen_IT_2);

        std_IT_2.setTypeStatus(SpecimenTypeDesignationStatus.ISOTYPE());

        typifiedName.addTypeDesignation(std_IT_2, false);

        SpecimenTypeDesignation std_IT_3 = SpecimenTypeDesignation.NewInstance();

        std_IT_3.setId(4);

        DerivedUnit specimen_IT_3 = DerivedUnit.NewInstance(SpecimenOrObservationType.PreservedSpecimen);

        specimen_IT_3.setTitleCache("M", true);

        std_IT_3.setTypeSpecimen(specimen_IT_3);

        std_IT_3.setTypeStatus(SpecimenTypeDesignationStatus.ISOTYPE());

        typifiedName.addTypeDesignation(std_IT_3, false);

        List<TypeDesignationBase> tds = new ArrayList<>();

        tds.add(ntd);

        tds.add(std_IT);

        tds.add(std_HT);

        tds.add(std_IT_2);

        tds.add(std_IT_3);

        TypeDesignationConverter typeDesignationConverter = new TypeDesignationConverter(tds);

        String result = typeDesignationConverter.buildString().print();

        System.err.println(result);

        Logger.getLogger(this.getClass()).debug(result);

        assertNotNull(result);

        assertEquals(

                "Prionus coriatius L. Type: Testland, near Bughausen, A.Kohlbecker 81989, 2017 (Holotype, OHA; Isotypes: BER, KEW); NameType: Unknown type category, Prionus L. Species Platarum; Type: (Isotype, M)"

                , result

                );

        LinkedHashMap<TypedEntityReference, TypeDesignationWorkingSet> orderedTypeDesignations =

                typeDesignationConverter.getOrderdTypeDesignationWorkingSets();

        Map<TypeDesignationStatusBase<?>, Collection<EntityReference>> byStatusMap = orderedTypeDesignations.values().iterator().next();

        Iterator<TypeDesignationStatusBase<?>> keyIt = byStatusMap.keySet().iterator();

        assertEquals("Holotype", keyIt.next().getLabel());

        assertEquals("Isotype", keyIt.next().getLabel());

    }

}