EDIT

* text=auto !eol

/LICENSE.TXT -text

ide/eclipse/Bootloader[!!-~]-[!!-~]Help.launch -text

ide/eclipse/Bootloader.launch -text

ide/eclipse/run[!!-~]cdm-server.jar[!!-~]in[!!-~]debugmode.launch -text

ide/eclipse/run[!!-~]cdm-server.jar.launch -text

/pom.xml -text

src/main/assembly/assembly.xml -text

src/main/installer/lib/ant-deb-task-0.0.1.jar -text

src/main/installer/linux/Makefile -text

src/main/installer/linux/build-deb.xml -text

src/main/installer/linux/cdmserver -text

src/main/installer/linux/copyright -text

src/main/installer/linux/postinst -text

src/main/installer/linux/postrm -text

src/main/installer/templates/.cdmLibrary/datasources.xml -text

src/main/installer/templates/copyright.txt -text

src/main/installer/win32/Launch4JavaCDMSERVER.xml -text

src/main/installer/win32/cdmserver.nsi -text

src/main/installer/win32/cdmserver/bin/cdmserver.bat -text

src/main/java/eu/etaxonomy/cdm/server/Bootloader.java -text

src/main/java/eu/etaxonomy/cdm/server/CdmInstanceProperties.java -text

src/main/java/eu/etaxonomy/cdm/server/CommandOptions.java -text

src/main/java/eu/etaxonomy/cdm/server/DataSourcePropertyParser.java -text

src/main/java/eu/etaxonomy/cdm/server/JvmManager.java -text

src/main/resources/c3p0.properties -text

src/main/resources/log4j.properties -text

src/main/webapp/WEB-INF/web.xml -text

src/main/webapp/css/server.css -text

src/main/webapp/css/style.css -text

src/main/webapp/favicon.ico -text

src/main/webapp/index.html -text

src/main/webapp/index.jsp -text

src/main/webapp/js/jquery.js -text

src/main/webapp/js/jquery.min.js -text

src/main/webapp/js/oai-pmh-status.js -text

src/main/webapp/robots.txt -text

/.classpath

/.project

/.settings

/dist

/target

The contents of this file are subject to the Mozilla Public License

Version 1.1 (the "License"); you may not use this file except in

compliance with the License. You may obtain a copy of the License at

http://www.mozilla.org/MPL/

Software distributed under the License is distributed on an "AS IS"

basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the

License for the specific language governing rights and limitations

under the License.

<?xml version="1.0" encoding="UTF-8" standalone="no"?>

<launchConfiguration type="org.eclipse.jdt.launching.localJavaApplication">

<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">

<listEntry value="/cdm-server/src/main/java/eu/etaxonomy/cdm/server/Bootloader.java"/>

</listAttribute>

<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">

<listEntry value="1"/>

</listAttribute>

<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="eu.etaxonomy.cdm.server.Bootloader"/>

<stringAttribute key="org.eclipse.jdt.launching.PROGRAM_ARGUMENTS" value="-help"/>

<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="cdm-server"/>

<stringAttribute key="org.eclipse.jdt.launching.VM_ARGUMENTS" value="-Xmx1024M&#13;&#10;&#13;&#10;-XX:PermSize=128m &#13;&#10;-XX:MaxPermSize=192m&#13;&#10;&#13;&#10;-XX:+UseConcMarkSweepGC &#13;&#10;-XX:+CMSClassUnloadingEnabled &#13;&#10;-XX:+CMSPermGenSweepingEnabled"/>

</launchConfiguration>

<?xml version="1.0" encoding="UTF-8" standalone="no"?>

<launchConfiguration type="org.eclipse.jdt.launching.localJavaApplication">

<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_PATHS">

<listEntry value="/cdm-server/src/main/java/eu/etaxonomy/cdm/server/Bootloader.java"/>

</listAttribute>

<listAttribute key="org.eclipse.debug.core.MAPPED_RESOURCE_TYPES">

<listEntry value="1"/>

</listAttribute>

<stringAttribute key="org.eclipse.debug.core.source_locator_id" value="org.eclipse.jdt.launching.sourceLocator.JavaSourceLookupDirector"/>

<stringAttribute key="org.eclipse.debug.core.source_locator_memento" value="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot; standalone=&quot;no&quot;?&gt;&#13;&#10;&lt;sourceLookupDirector&gt;&#13;&#10;&lt;sourceContainers duplicates=&quot;false&quot;&gt;&#13;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#13;&amp;#10;&amp;lt;javaProject name=&amp;quot;cdmlib-remote&amp;quot;/&amp;gt;&amp;#13;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.javaProject&quot;/&gt;&#13;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#13;&amp;#10;&amp;lt;javaProject name=&amp;quot;cdmlib-commons&amp;quot;/&amp;gt;&amp;#13;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.javaProject&quot;/&gt;&#13;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#13;&amp;#10;&amp;lt;javaProject name=&amp;quot;cdmlib-ext&amp;quot;/&amp;gt;&amp;#13;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.javaProject&quot;/&gt;&#13;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#13;&amp;#10;&amp;lt;javaProject name=&amp;quot;cdmlib-model&amp;quot;/&amp;gt;&amp;#13;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.javaProject&quot;/&gt;&#13;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#13;&amp;#10;&amp;lt;javaProject name=&amp;quot;cdmlib-persistence&amp;quot;/&amp;gt;&amp;#13;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.javaProject&quot;/&gt;&#13;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#13;&amp;#10;&amp;lt;javaProject name=&amp;quot;cdmlib-services&amp;quot;/&amp;gt;&amp;#13;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.javaProject&quot;/&gt;&#13;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#13;&amp;#10;&amp;lt;javaProject name=&amp;quot;cdmlib-io&amp;quot;/&amp;gt;&amp;#13;&amp;#10;&quot; typeId=&quot;org.eclipse.jdt.launching.sourceContainer.javaProject&quot;/&gt;&#13;&#10;&lt;container memento=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot; standalone=&amp;quot;no&amp;quot;?&amp;gt;&amp;#13;&amp;#10;&amp;lt;default/&amp;gt;&amp;#13;&amp;#10;&quot; typeId=&quot;org.eclipse.debug.core.containerType.default&quot;/&gt;&#13;&#10;&lt;/sourceContainers&gt;&#13;&#10;&lt;/sourceLookupDirector&gt;&#13;&#10;"/>

<stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="eu.etaxonomy.cdm.server.Bootloader"/>

<stringAttribute key="org.eclipse.jdt.launching.PROGRAM_ARGUMENTS" value="-webapp=D:\workspaces\cdmlib-trunk\cdmlib-remote\target\cdmserver\&#13;&#10;-jmx"/>

<stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="cdm-server"/>

<stringAttribute key="org.eclipse.jdt.launching.VM_ARGUMENTS" value="-Xmx1024M&#13;&#10;&#13;&#10;-XX:PermSize=128m &#13;&#10;-XX:MaxPermSize=192m&#13;&#10;&#13;&#10;-XX:+UseConcMarkSweepGC &#13;&#10;-XX:+CMSClassUnloadingEnabled &#13;&#10;-XX:+CMSPermGenSweepingEnabled&#13;&#10;&#13;&#10;-Dorg.eclipse.jetty.util.log.DEBUG=false&#13;&#10;&#13;&#10;-Dcom.sun.management.jmxremote.ssl=false&#13;&#10;-Dcom.sun.management.jmxremote.authenticate=false&#13;&#10;-Dcom.sun.management.jmxremote.port=9999"/>

</launchConfiguration>

<?xml version="1.0" encoding="UTF-8" standalone="no"?>

<launchConfiguration type="org.eclipse.ui.externaltools.ProgramLaunchConfigurationType">

<stringAttribute key="bad_container_name" value="run_cdm-server_jar"/>

<stringAttribute key="org.eclipse.ui.externaltools.ATTR_LOCATION" value="C:\Programme\Java\jdk1.6.0_11\bin\java.exe"/>

<stringAttribute key="org.eclipse.ui.externaltools.ATTR_TOOL_ARGUMENTS" value="-Xdebug -Xnoagent -Xrunjdwp:transport=dt_socket,address=8000,server=y,suspend=n&#13;&#10;&#13;&#10;-Xmx1024M&#13;&#10;&#13;&#10;-XX:PermSize=128m &#13;&#10;-XX:MaxPermSize=192m&#13;&#10;&#13;&#10;-XX:+UseConcMarkSweepGC &#13;&#10;-XX:+CMSClassUnloadingEnabled &#13;&#10;-XX:+CMSPermGenSweepingEnabled&#13;&#10;&#13;&#10;-jar cdm-server-2.4.jar"/>

<stringAttribute key="org.eclipse.ui.externaltools.ATTR_WORKING_DIRECTORY" value="${workspace_loc:/cdm-server/target}"/>

</launchConfiguration>

<?xml version="1.0" encoding="UTF-8" standalone="no"?>

<launchConfiguration type="org.eclipse.ui.externaltools.ProgramLaunchConfigurationType">

<stringAttribute key="bad_container_name" value="run_cdm-server_jar"/>

<stringAttribute key="org.eclipse.ui.externaltools.ATTR_LOCATION" value="C:\Programme\Java\jdk1.6.0_11\bin\java.exe"/>

<stringAttribute key="org.eclipse.ui.externaltools.ATTR_TOOL_ARGUMENTS" value="-Xmx1500M&#13;&#10;&#13;&#10;-XX:PermSize=128m &#13;&#10;-XX:MaxPermSize=196m&#13;&#10;&#13;&#10;-XX:+UseConcMarkSweepGC &#13;&#10;-XX:+CMSClassUnloadingEnabled &#13;&#10;-XX:+CMSPermGenSweepingEnabled&#13;&#10;&#13;&#10;-Dlog4j.configDebug=true&#13;&#10;&#13;&#10;-jar cdm-server-2.4.jar -jmx"/>

<stringAttribute key="org.eclipse.ui.externaltools.ATTR_WORKING_DIRECTORY" value="${workspace_loc:/cdm-server/target}"/>

</launchConfiguration>

<?xml version="1.0" encoding="UTF-8"?>

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">

  <!-- 

    xsi:schemaLocation="http://maven.apache.org/POM/4.0.0

    http://maven.apache.org/maven-v4_0_0.xsd"

  -->

  <parent>

    <groupId>eu.etaxonomy</groupId>

    <artifactId>cdmlib-parent</artifactId>

    <version>2.5</version>

	<relativePath>pom.xml</relativePath>

  </parent>

  <modelVersion>4.0.0</modelVersion>

  <artifactId>cdm-server</artifactId>

  <packaging>jar</packaging>

  <name>CDM Community Standalone Server</name>

  <properties>

    <jetty-version>7.0.1.v20091125</jetty-version>

  </properties>

  <dependencies>

    <dependency>

      <groupId>eu.etaxonomy</groupId>

      <artifactId>cdmlib-remote-webapp</artifactId>

      <version>${project.version}</version>

      <type>war</type>

    </dependency>

    <!-- JETTY 7 -->

    <dependency>

      <groupId>org.eclipse.jetty</groupId>

      <artifactId>jetty-webapp</artifactId>

      <version>${jetty-version}</version>

    </dependency>

    <dependency>

      <groupId>org.eclipse.jetty</groupId>

      <artifactId>jetty-plus</artifactId>

      <version>${jetty-version}</version>

    </dependency>

    <dependency>

      <groupId>org.eclipse.jetty</groupId>

      <artifactId>jetty-webapp</artifactId>

      <version>${jetty-version}</version>

    </dependency>

    <dependency>

	   <groupId>org.eclipse.jetty</groupId>

	   <artifactId>jetty-jmx</artifactId>

	   <version>${jetty-version}</version>

	</dependency>

    <dependency>

      <groupId>org.mortbay.jetty</groupId>

      <artifactId>jsp-2.1-glassfish</artifactId>

      <version>9.1.1.B60.25.p2</version>

    </dependency>

    <dependency>

      <groupId>javax.transaction</groupId>

      <artifactId>jta</artifactId>

      <version>1.1</version>

    </dependency>

    <!--  Logging  -->

    <dependency>

	   <groupId>org.slf4j</groupId>

	   <artifactId>slf4j-api</artifactId>

	   <version>1.6.1</version>

	</dependency>

	<dependency>

	   <groupId>org.slf4j</groupId>

	   <artifactId>slf4j-log4j12</artifactId>

	   <version>1.6.1</version>

	</dependency>

 	<dependency>

	   <groupId>commons-cli</groupId>

	   <artifactId>commons-cli</artifactId>

	   <version>1.2</version>

	</dependency>

	<dependency>

       <groupId>commons-io</groupId>

       <artifactId>commons-io</artifactId>

    </dependency>

	<dependency>

	   <groupId>net.sf.jopt-simple</groupId>

	   <artifactId>jopt-simple</artifactId>

	   <version>3.2</version>

	</dependency>

	<dependency>

	   <groupId>c3p0</groupId>

	   <artifactId>c3p0</artifactId>

	   <version>0.9.1</version>

	</dependency>

	<!--  DATABASE DRIVER -->

	 <dependency>

       <groupId>mysql</groupId>

       <artifactId>mysql-connector-java</artifactId>

       <version>5.0.5</version>

     </dependency>

  </dependencies>

  <build>

    <plugins>

      <!-- INSTALL -->

       <plugin>

        <artifactId>maven-assembly-plugin</artifactId>

        <configuration>

          <appendAssemblyId>false</appendAssemblyId>

          <descriptors>

            <descriptor>src/main/assembly/assembly.xml</descriptor>

          </descriptors>

          <archive>

            <manifest>

                <mainClass>eu.etaxonomy.cdm.server.Bootloader</mainClass>

            </manifest>

          </archive>

        </configuration>

        <executions>

          <execution>

            <id>make-assembly</id>

            <phase>install</phase>

            <goals>

              <goal>attached</goal>

            </goals>

          </execution>

        </executions>

      </plugin>

      <!-- package the default webapp -->

      <plugin>

	      <groupId>org.apache.maven.plugins</groupId>

	      <artifactId>maven-war-plugin</artifactId>

	      <version>2.1-beta-1</version>

	      <configuration>

	          <warName>default-webapp</warName>

		      <overlays>

		          <overlay>

			           <groupId>eu.etaxonomy</groupId>

					   <artifactId>cdmlib-remote-webapp</artifactId>

					   <skip>true</skip><!-- Do Not overlay  --> 

			      </overlay>

		      </overlays>

	      </configuration>

	      <executions>

	          <execution>

	            <phase>package</phase>

		        <goals>

		          <goal>war</goal>

		        </goals>

	          </execution>

            </executions>

      </plugin>

      <!-- DEPLOY -->

      <plugin>

          <artifactId>maven-antrun-plugin</artifactId>

          <version>1.3</version>

            <executions>

              <execution>

                <phase>install</phase>

                 <!--

                  must run after winstone-maven-plugin

                -->

                <configuration>

                  <tasks>

                    <!--

                     ${project.patchversion} is explicitely set in this pom

                     ${buildNumber} is set by the buildnumber-maven-plugin  

                     Cannot create the build number if you have local modifications, 

                     to allow creating a buildnumber anyway you can ommit                     

                    -->

                    <!-- FIXME

                    <property name="project.fullversionstring" value="${project.version}.${project.patchversion}.r${buildNumber}"/>

                    <property name="project.fullversionstring" value="${project.version}.0.r0000"/>

                     -->

                   <property name="project.fullversionstring" value="${project.version}.0.${maven.build.timestamp}"/>

                   <ant antfile="${project.basedir}/src/main/installer/linux/build-deb.xml" dir="${project.basedir}" />

                  </tasks>

                </configuration>

                <goals>

                  <goal>run</goal>

                </goals>

              </execution>

            </executions>

        </plugin>

    </plugins>

  </build>

</project>

<?xml version="1.0" encoding="UTF-8"?>

<assembly>

	<id>cdmserver-standalone</id>

	<formats>

		<format>jar</format>

	</formats>

	<includeBaseDirectory>false</includeBaseDirectory>

	<fileSets>

		<fileSet>

			<directory>target/classes</directory>

			<outputDirectory />

		</fileSet>

		<fileSet>

			<directory>${project.build.directory}</directory>

			<includes>

				<include>*.war</include>

			</includes>

			<outputDirectory />

		</fileSet>

		<fileSet>

			<includes>

				<include>${project.basedir}/LICENSE*</include>

			</includes>

			<outputDirectory />

		</fileSet>

	</fileSets>

	<dependencySets>

		<dependencySet>

			<unpack>true</unpack>

			<outputDirectory />

			<outputFileNameMapping />

		</dependencySet>

		<dependencySet>

			<outputDirectory />

			<outputFileNameMapping>cdmserver.war</outputFileNameMapping>

			<includes>

				<include>eu.etaxonomy:cdmlib-remote-webapp</include>

			</includes>

		</dependencySet>

	</dependencySets>

</assembly>

install :

	cp ./cdmserver $(DESTDIR)/usr/bin/

	cp datasources.xml $(DESTDIR)/usr/bin/

	cp cdmserver-standalone.jar $(DESTDIR)/usr/bin/

	#cp cdmserver.properties $(DESTDIR)/usr/bin/

clean:

<project name="Java application deb packager" default="deb_package">

	<echo>basedir: ${basedir}</echo>

	<!-- UNUSED

  <tstamp>

    <format property="project.buildtimestamp" pattern="yyyyMMddkkmmss"/>

  </tstamp>

  -->

	<!-- Package Name & Version -->

	<property name="package.name" value="cdmserver" />

	<!-- ${project.fullversionstring} must be passed as parameter --> 

	<property name="version.cdmserver" value="${project.fullversionstring}" />

	<property name="version.debian" value="5" />

	<echo>upstream-version = version.cdmserver: ${version.cdmserver}</echo>

	<echo>debian-version = version.debian: ${version.debian}</echo>

	<!-- Various Filenames -->

	<property name="cdmserverscript.filename" value="cdmserver" />

	<property name="datasources.filename" value="datasources.xml" />

	<property name="cdmserver.filename" value="cdm-server-2.4.jar" />

  <property name="cdmserver.destinationfilename" value="cdm-server.jar" />

	<!-- Various Paths -->

	<property name="installer.path" value="src/main/installer" />

	<property name="cdmserver.target.path" value="target" />

	<property name="dest.path" value="usr/bin" />

	<property name="linux.installer.path" value="${installer.path}/linux" />

	<!-- location -->

	<property name="basedirToRemoteRoot" value="../../../.." />

	<!--

    <property name="initscript.path" location="${installer.path}/linux/initscript" />

	<property name="cdmlibremote.path" value="../../../.." />

	-->

	<property name="cdmserverscript.path" value="${installer.path}/templates" />

	<!-- location -->

	<property name="cdmserver.path" value="${installer.path}/templates" />

	<!-- location -->

	<property name="datasources.path" value="${installer.path}/templates/.cdmLibrary" />

	<!-- location -->

	<property name="postinst.path" value="${linux.installer.path}"/>

	<!-- location -->

	<property name="postrm.path" value="${linux.installer.path}"/>

	<!-- location -->

	<property name="ant-deb-task.path" value="${linux.installer.path}/../lib"/>

	<!-- location -->

	<!-- create distribution target -->

	<path id="ant-deb-task.classpath">

		<fileset dir="${basedir}/${ant-deb-task.path}" includes="*.jar" />

	</path>	

  <taskdef resource="ant_deb_task.properties" classpathref="ant-deb-task.classpath">

	</taskdef>

	<target name="deb_package" description="build the deb file">

		<mkdir dir="dist" />

		<deb todir="dist" package="${package.name}" 

			section="graphics" postinst="${postinst.path}/postinst" 

			postrm="${postinst.path}/postrm">

			<version upstream="${version.cdmserver}" debian="${version.debian}" />

			<maintainer name="BGBM Team" email="editsupport@bgbm.de" />

			<description synopsis="CDM Server: The CDM model for the EDIT Biodiversity Project">

CDM Server is a cross platform blablabla, visit www.bgbm.de for more info.

            </description>

			<tarfileset file="${linux.installer.path}/${cdmserverscript.filename}" prefix="${dest.path}" />

			<tarfileset file="${datasources.path}/${datasources.filename}" prefix="${dest.path}" />

			<tarfileset file="${cdmserver.target.path}/${cdmserver.filename}" fullpath="${dest.path}/${cdmserver.destinationfilename}" />

		</deb>

	</target>

	<!--

	 <target name="clean" description="remove all work folders">

	 	  <delete dir="dist"/>

	 </target>

	 -->

</project>

#! /bin/sh

### BEGIN INIT INFO

# Provides:          CDM Server

# Required-Start:    $local_fs $remote_fs

# Required-Stop:     $local_fs $remote_fs

# Default-Start:     2 3 4 5

# Default-Stop:      0 1 6

# Short-Description: Starts CDMServer daemon

# Description:       Starts CDMServer daemon which provides a RESTful webservice to access CDM Stores

### END INIT INFO

# install init script:		update-rc.d cdmserver defaults

# uninstall init script:	update-rc.d -f cdmserver remove

# Author: Andreas Kohlbecker

# Do NOT "set -e"

# PATH should only include /usr/* if it runs after the mountnfs.sh script

PATH=/usr/sbin:/usr/bin:/sbin:/bin

#CDM_HOME=/home/cdm

CDM_HOME=/opt/cdmserver

CDM_LIBRARY=$CDM_HOME".cdmLibrary"

DESC="CDM Server"

NAME=cdmserver

LOG="$CDM_HOME/$NAME.log"

DAEMON=/usr/bin/java

DAEMON_ARGS="-Xmx1024M -XX:PermSize=128m -XX:MaxPermSize=192m -XX:+UseConcMarkSweepGC -XX:+CMSClassUnloadingEnabled -XX:+CMSPermGenSweepingEnabled -Duser.home=$CDM_HOME -jar "$CDM_HOME/cdm-server.jar""

PIDFILE=/var/run/$NAME.pid

SCRIPTNAME=/etc/init.d/$NAME

# Exit if the package is not installed

[ -x "$DAEMON" ] || exit 0

# Read configuration variable file if it is present

[ -r /etc/default/$NAME ] && . /etc/default/$NAME

# Load the VERBOSE setting and other rcS variables

[ -f /etc/default/rcS ] && . /etc/default/rcS

# Define LSB log_* functions.

# Depend on lsb-base (>= 3.0-6) to ensure that this file is present.

. /lib/lsb/init-functions

pid_of_cdmserver() {

    cat "$PIDFILE"

}

#

# Function that starts the daemon/service

#

do_start()

{

  #[ -e "$LOG" ] && cnt=`wc -l "$LOG" | awk '{ print $1 }'` || cnt=1

	# Return

	#   0 if daemon has been started

	#   1 if daemon was already running

	#   2 if daemon could not be started

	# log_daemon_msg "Starting $DESC" "$NAME with $DAEMON_ARGS"

	echo -ne "Starting $DESC" "$NAME with $DAEMON_ARGS"

	start-stop-daemon --start --quiet --pidfile $PIDFILE --exec $DAEMON --test > /dev/null \

		|| return 1

	start-stop-daemon --start --pidfile $PIDFILE --make-pidfile --background --exec $DAEMON -- \

		$DAEMON_ARGS \

		|| return 2

	# Add code here, if necessary, that waits for the process to be ready

	# to handle requests from services started subsequently which depend

	# on this one.  As a last resort, sleep for some time.

        #while { pid_of_cdmserver > /dev/null ; } &&

        #        ! { tail +$cnt "$LOG" | grep -q 'Winstone Servlet Engine .* running' ; } ; do

        #      sleep 1

        #done

}

#

# Function that stops the daemon/service

#

do_stop()

{

	# Return

	#   0 if daemon has been stopped

	#   1 if daemon was already stopped

	#   2 if daemon could not be stopped

	#   other if a failure occurred

	log_daemon_msg "Stopping $DESC" "$NAME"

	start-stop-daemon --stop --quiet --retry=TERM/30/KILL/5 --pidfile $PIDFILE --name $NAME

	RETVAL="$?"

	[ "$RETVAL" = 2 ] && return 2

	# Wait for children to finish too if this is a daemon that forks

	# and if the daemon is only ever run from this initscript.

	# If the above conditions are not satisfied then add some other code

	# that waits for the process to drop all resources that could be

	# needed by services started subsequently.  A last resort is to

	# sleep for some time.

	start-stop-daemon --stop --quiet --oknodo --retry=0/30/KILL/5 --exec $DAEMON

	[ "$?" = 2 ] && return 2

	# Many daemons don't delete their pidfiles when they exit.

	rm -f $PIDFILE

	return "$RETVAL"

}

#

# Function that sends a SIGHUP to the daemon/service

#

do_reload() {

	#

	# If the daemon can reload its configuration without

	# restarting (for example, when it is sent a SIGHUP),

	# then implement that here.

	#

	start-stop-daemon --stop --signal 1 --quiet --pidfile $PIDFILE --name $NAME

	return 0

}

case "$1" in

  start)

	[ "$VERBOSE" != no ] && log_daemon_msg "Starting $DESC" "$NAME"

	do_start

	case "$?" in

		0|1) [ "$VERBOSE" != no ] && log_end_msg 0 ;;

		2) [ "$VERBOSE" != no ] && log_end_msg 1 ;;

	esac

	;;

  debug)

    DAEMON_ARGS=" -Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=n,address=8000 $DAEMON_ARGS"

    [ "$VERBOSE" != no ] && log_daemon_msg "Starting in debug mode $DESC" "$NAME"

    do_start

    case "$?" in

        0|1) [ "$VERBOSE" != no ] && log_end_msg 0 ;;

        2) [ "$VERBOSE" != no ] && log_end_msg 1 ;;

    esac

    ;;

  stop)

	[ "$VERBOSE" != no ] && log_daemon_msg "Stopping $DESC" "$NAME"

	do_stop

	case "$?" in

		0|1) [ "$VERBOSE" != no ] && log_end_msg 0 ;;

		2) [ "$VERBOSE" != no ] && log_end_msg 1 ;;

	esac

	;;

  #reload|force-reload)

	#

	# If do_reload() is not implemented then leave this commented out

	# and leave 'force-reload' as an alias for 'restart'.

	#

	#log_daemon_msg "Reloading $DESC" "$NAME"

	#do_reload

	#log_end_msg $?

	#;;

  restart|force-reload)

	#

	# If the "reload" option is implemented then remove the

	# 'force-reload' alias

	#

	log_daemon_msg "Restarting $DESC" "$NAME"

	do_stop

	case "$?" in

	  0|1)

		do_start

		case "$?" in

			0) log_end_msg 0 ;;

			1) log_end_msg 1 ;; # Old process is still running

			*) log_end_msg 1 ;; # Failed to start

		esac

		;;

	  *)

	  	# Failed to stop

		log_end_msg 1

		;;

	esac

	;;

  *)

	#echo "Usage: $SCRIPTNAME {start|stop|restart|reload|force-reload}" >&2

	echo "Usage: $SCRIPTNAME {start|stop|restart|force-reload|debug}" >&2

	exit 3

	;;

esac

:

This package was debianized by Francisco <editsupport@bgbm.org> on

Tue, 12 Jan 2010 11:19:53 +0100.

It was downloaded from <url://example.com>

Upstream Author(s):

    <put author's name and email here>

    <likewise for another author>

Copyright:

    <Copyright (C) 2010 EDIT>

    <likewise for another author>

License:

    	The contents of this file are subject to the Mozilla Public License

 	Version 1.1 (the "License"); you may not use this file except in

 	compliance with the License. You may obtain a copy of the License at

 	http://www.mozilla.org/MPL/

 	Software distributed under the License is distributed on an "AS IS"

 	basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the

 	License for the specific language governing rights and limitations

 	under the License.

The Debian packaging is (C) 2010,<editsupport@bgbm.org> and

is licensed under the GPL, see `/usr/share/common-licenses/GPL'.

# Please also look if there are files or directories which have a

# different copyright/license attached and list them here.

#!/bin/sh

# postinst script for cdmserver

#

# see: dh_installdeb(1)

set -e

#

#variables

#

CDM_HOME="/opt/cdmserver/"

CDM_LIBRARY=$CDM_HOME".cdmLibrary"

CDM_LOG="/var/log/cdmserver/"

bindir="/etc/init.d/"

TMP="/usr/bin/"

SERVERSCRIPT="cdmserver"

SERVERJAR="cdm-server.jar"

SERVERCONF="datasources.xml"

PROPERTIES="cdmserver.properties"

CDM_USER=cdmuser

CDM_GROUP=cdmgroup

CDM_USER_HOME=/opt/cdmserver/

#CDM_USER_HOME=/root/cdmserver/

#

#functions

#

userExist(){

    grep $1 /etc/passwd > /dev/null

    [ $? -eq 0 ] && return $TRUE || return $FALSE

}

groupExist(){

    grep $1 /etc/group > /dev/null

    [ $? -eq 0 ] && return $TRUE || return $FALSE

}

# summary of how this script can be called:

#        * <postinst> `configure' <most-recently-configured-version>

#        * <old-postinst> `abort-upgrade' <new version>

#        * <conflictor's-postinst> `abort-remove' `in-favour' <package>

#          <new-version>

#        * <postinst> `abort-remove'

#        * <deconfigured's-postinst> `abort-deconfigure' `in-favour'

#          <failed-install-package> <version> `removing'

#          <conflicting-package> <version>

# for details, see http://www.debian.org/doc/debian-policy/ or

# the debian-policy package

case "$1" in

    configure)

    #

    # adding the user

    # if the user already exist will be deleted

    #

    if ( userExist $CDM_USER )

    then

    echo USER ALREADY EXITS!!!!

    userdel $CDM_USER

    fi

    #

    # adding the group

    # if the group already exist will be deleted

    #

    if ( groupExist $CDM_GROUP  )

    then

        echo GROUP ALREADY EXISTS!!!!

        groupdel $CDM_GROUP

    fi

    groupadd $CDM_GROUP

    useradd -G cdmgroup -d $CDM_USER_HOME $CDM_USER

    #installing the script

    cp $TMP$SERVERSCRIPT $bindir

    chmod 755 $bindir$SERVERSCRIPT

    chown $CDM_USER:$CDM_GROUP $bindir$SERVERSCRIPT

    update-rc.d $SERVERSCRIPT defaults 98 02

    #creating the directories

    if [ ! -d $CDM_HOME ]; then

        mkdir -p $CDM_HOME

    fi

    if [ ! -d $CDM_LIBRARY ]; then

        mkdir -p $CDM_LIBRARY

    fi

    if [ ! -d $CDM_LOG ]; then

        mkdir -p $CDM_LOG

    fi

    #installing the server and the configfile

    cp $TMP$SERVERCONF $CDM_LIBRARY

    cp $TMP$SERVERJAR $CDM_HOME

    #cp $TMP$PROPERTIES $CDM_LIBRARY

    #mkdir -p /root/.cdmLibrary

    #cp $TMP$SERVERCONF /root/.cdmLibrary/

    cp $TMP$SERVERCONF $CDM_LIBRARY

    #starting the script

    $bindir$SERVERSCRIPT start

    ;;

    abort-upgrade|abort-remove|abort-deconfigure)

    ;;

    *)

        echo "postinst called with unknown argument \`$1'" >&2

        exit 1

    ;;

esac

# dh_installdeb will replace this with shell code automatically

# generated by other debhelper scripts.

#DEBHELPER#

exit 0

#!/bin/sh

# postrm script for cdmserver

#

# see: dh_installdeb(1)

set -e

#variables

CDM_HOME="/opt/cdmserver/"

CDM_LIBRARY=$CDM_HOME".cdmLibrary"

LOG="/var/log/cdmserver/"

bindir="/etc/init.d/"

SERVERSCRIPT="cdmserver"

SERVERJAR="cdm-server.jar"

SERVERCONF="datasources.xml"

CDM_USER="cdmuser"

CDM_GROUP="cdmgroup"

#

#functions

#

userExist(){

    grep $1 /etc/passwd > /dev/null

    [ $? -eq 0 ] && return $TRUE || return $FALSE

}

groupExist(){

    grep $1 /etc/group > /dev/null

    [ $? -eq 0 ] && return $TRUE || return $FALSE

}

# summary of how this script can be called:

#        * <postrm> `remove'

#        * <postrm> `purge'

#        * <old-postrm> `upgrade' <new-version>

#        * <new-postrm> `failed-upgrade' <old-version>

#        * <new-postrm> `abort-install'

#        * <new-postrm> `abort-install' <old-version>

#        * <new-postrm> `abort-upgrade' <old-version>

#        * <disappearer's-postrm> `disappear' <overwriter>

#          <overwriter-version>

# for details, see http://www.debian.org/doc/debian-policy/ or

# the debian-policy package

do_remove(){

    #stopping the server

    if [ -e $bindir$SERVERSCRIPT ]

    then

    $bindir$SERVERSCRIPT stop

    fi

    #removing the user and group

    if ( userExist $CDM_USER  )

    then

    userdel $CDM_USER

    fi

    if ( groupExist $CDM_GROUP  )

    then

    groupdel $CDM_GROUP

    fi

    # remove the binary

    rm $CDM_HOME$SERVERJAR

    return $TRUE

}

do_purge(){

    do_remove

    #removing the daemon script

    rm -f $bindir$SERVERSCRIPT

    update-rc.d -f $SERVERSCRIPT remove

    #removing the directories

    rm -rf $CDM_LIBRARY

    rm -rf $CDM_HOME

    return $TRUE

}

case "$1" in

    remove|upgrade|failed-upgrade|abort-install|abort-upgrade|disappear)

        do_remove

    ;;

    purge)

        do_purge

    ;;

    *)

        echo "postrm called with unknown argument \`$1'" >&2

        exit 1

    ;;

esac

# dh_installdeb will replace this with shell code automatically

# generated by other debhelper scripts.

#DEBHELPER#

exit 0

<?xml version="1.0" encoding="UTF-8"?>

<beans xmlns="http://www.springframework.org/schema/beans"

    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"

    xmlns:tx="http://www.springframework.org/schema/tx"

    xmlns:context="http://www.springframework.org/schema/context"

    xsi:schemaLocation="http://www.springframework.org/schema/beans   http://www.springframework.org/schema/beans/spring-beans-2.5.xsd

    http://www.springframework.org/schema/context   http://www.springframework.org/schema/context/spring-context-2.5.xsd

    http://www.springframework.org/schema/tx   http://www.springframework.org/schema/tx/spring-tx-2.5.xsd

    ">

    <!-- ======================================================

       NOTICE: 

       For each bean defined herein the cdm server will create

       and start an internal cdm server instance.

       These id of the datasource beans are being used as name 

       and root path for the dem server instances

       ======================================================-->

     <!-- ======================================================

       !!! THIS IS A TEMPLATE !!!

       In order to use it you must edit the 'url', 'username', 'password'

       and also 'driverClass' if you are not using mySQL.

       ======================================================-->

    <!-- the default data sources can be mapped to a specific URL root folder   -->

    <bean id="myCDMServerInstance1"  lazy-init="true" class="com.mchange.v2.c3p0.ComboPooledDataSource">

        <property name="driverClass" value="com.mysql.jdbc.Driver"/>

        <property name="user" value="edit"/>

        <property name="password" value="wp5"/>

        <property name="jdbcUrl" value="jdbc:mysql://192.168.1.100/myCDMdatabase_1"/>

    </bean>

    <!-- additional data sources mapped to other URL rot folders -->

    <!--  

        <bean id="myCDMServerInstance2"  lazy-init="true" class="com.mchange.v2.c3p0.ComboPooledDataSource">

        <property name="driverClass" value="com.mysql.jdbc.Driver"/>

        <property name="user" value="user"/>

        <property name="password" value="123"/>

        <property name="jdbcUrl" value="jdbc:mysql://192.168.1.100/myCDMdatabase_2"/>

    </bean>

     <bean id="myCDMServerInstance3"  lazy-init="true" class="com.mchange.v2.c3p0.ComboPooledDataSource">

        <property name="driverClass" value="com.mysql.jdbc.Driver"/>

        <property name="user" value="user"/>

        <property name="password" value="123"/>

        <property name="jdbcUrl" value="jdbc:mysql://192.168.1.100/myCDMdatabase_3"/>

    </bean>

    <bean id="palmae"  lazy-init="true" class="org.springframework.jdbc.datasource.SimpleDriverDataSource">

        <property name="driverClass" value="com.mysql.jdbc.Driver"/>

        <property name="username" value="edit"/>

        <property name="password" value="wp5"/>

        <property name="url" value="jdbc:mysql://160.45.63.201/cdm_edit_palmae_b"/>

    </bean>

    -->

</beans>

This package was debianized by Francisco <editsupport@bgbm.org> on

Tue, 12 Jan 2010 11:19:53 +0100.

It was downloaded from <url://example.com>

Upstream Author(s):

    <put author's name and email here>

    <likewise for another author>

Copyright:

    <Copyright (C) 2010 EDIT>

    <likewise for another author>

License:

    	The contents of this file are subject to the Mozilla Public License

 	Version 1.1 (the "License"); you may not use this file except in

 	compliance with the License. You may obtain a copy of the License at

 	http://www.mozilla.org/MPL/

 	Software distributed under the License is distributed on an "AS IS"

 	basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the

 	License for the specific language governing rights and limitations

 	under the License.

The Debian packaging is (C) 2010,<editsupport@bgbm.org> and

is licensed under the GPL, see `/usr/share/common-licenses/GPL'.

# Please also look if there are files or directories which have a

# different copyright/license attached and list them here.

<launch4jConfig>

  <dontWrapJar>false</dontWrapJar>

  <headerType>console</headerType>

  <jar>C:\Dokumente und Einstellungen\f.revilla\Eigene Dateien\dev\cdm-server\target\cdm-server-2.5.jar</jar>

  <outfile>cdmserver\bin\cdmserver.exe</outfile>

  <errTitle></errTitle>

  <cmdLine></cmdLine>

  <chdir></chdir>

  <priority>normal</priority>

  <downloadUrl>http://java.com/download</downloadUrl>

  <supportUrl></supportUrl>

  <customProcName>false</customProcName>

  <stayAlive>false</stayAlive>

  <manifest></manifest>

  <icon></icon>

  <jre>

    <path></path>

    <minVersion>1.5.0</minVersion>

    <maxVersion></maxVersion>

    <jdkPreference>preferJre</jdkPreference>

    <opt>-Xmx1024M -jar &quot;%CD%..\\libs\\cdm-server-2.5.jar&quot; --httpPort=8080 --ajp13Port=-1 --logfile=%CD%..\\logs\\cdmserverLog.txt</opt>

  </jre>

</launch4jConfig>

; Script generated by the HM NIS Edit Script Wizard.

;Copy a file

!define FileCopy `!insertmacro FileCopy`

!macro FileCopy FilePath TargetDir

  CreateDirectory `${TargetDir}`

  CopyFiles `${FilePath}` `${TargetDir}`

!macroend

; HM NIS Edit Wizard helper defines

!define PRODUCT_NAME "cdmserver"

!define PRODUCT_VERSION "1.0"

!define PRODUCT_PUBLISHER "EDIT"

!define PRODUCT_WEB_SITE "http://wp5.e-taxonomy.eu/"

!define PRODUCT_UNINST_KEY "Software\Microsoft\Windows\CurrentVersion\Uninstall\${PRODUCT_NAME}"

!define PRODUCT_UNINST_ROOT_KEY "HKLM"

!define COPYRIGHT_FILE "..\templates\copyright.txt"

!define DATASOURCES_FILE "..\templates\.cdmLibrary\datasources.xml"

!define JAR_FILE "..\..\..\..\target\cdm-server-2.5.jar"

!define JAR_FILE_NAME "cdm-server-2.5.jar"

!define COPYRIGHT_FILE_NAME "copyright.txt"

; MUI 1.67 compatible ------

!include "MUI.nsh"

; MUI Settings

!define MUI_ABORTWARNING

!define MUI_ICON "${NSISDIR}\Contrib\Graphics\Icons\modern-install.ico"

!define MUI_UNICON "${NSISDIR}\Contrib\Graphics\Icons\modern-uninstall.ico"

; Language Selection Dialog Settings

!define MUI_LANGDLL_REGISTRY_ROOT "${PRODUCT_UNINST_ROOT_KEY}"

!define MUI_LANGDLL_REGISTRY_KEY "${PRODUCT_UNINST_KEY}"

!define MUI_LANGDLL_REGISTRY_VALUENAME "NSIS:Language"

; Welcome page

!insertmacro MUI_PAGE_WELCOME

; License page

!insertmacro MUI_PAGE_LICENSE ${COPYRIGHT_FILE}

; Directory page

!insertmacro MUI_PAGE_DIRECTORY

; Instfiles page

!insertmacro MUI_PAGE_INSTFILES

; Finish page

!insertmacro MUI_PAGE_FINISH

; Uninstaller pages

!insertmacro MUI_UNPAGE_INSTFILES

; Language files

!insertmacro MUI_LANGUAGE "English"

!insertmacro MUI_LANGUAGE "French"

!insertmacro MUI_LANGUAGE "German"

!insertmacro MUI_LANGUAGE "Spanish"

; MUI end ------

Name "${PRODUCT_NAME} ${PRODUCT_VERSION}"

OutFile "Setup.exe"

InstallDir "$PROGRAMFILES\cdmserver"

ShowInstDetails show

ShowUnInstDetails show

Function .onInit

  !insertmacro MUI_LANGDLL_DISPLAY

FunctionEnd

Section "MainSection" SEC01

  SetOutPath "$INSTDIR\bin"

  SetOverwrite try

  File "cdmserver\bin\cdmserver.bat"

  File "cdmserver\bin\cdmserver.exe"

  SetOutPath "$INSTDIR\libs\.cdmLibrary"

  ;File "cdmserver\libs\.cdmLibrary\datasources.xml"

  File ${DATASOURCES_FILE}

  SetOutPath "$INSTDIR\libs"

  ;File "cdmserver\libs\cdmserver-standalone.jar"

  File ${JAR_FILE}

  SetOutPath "$INSTDIR\license"

  ;File "cdmserver\license\license.txt"

  File ${COPYRIGHT_FILE}

  SetOutPath "$INSTDIR\logs"

  ;File "cdmserver\logs\cdmserverLog.txt"

  ${FileCopy} `$INSTDIR\libs\.cdmLibrary\datasources.xml` `$PROFILE\.cdmLibrary`

SectionEnd

Section -AdditionalIcons

  SetOutPath $INSTDIR

  WriteIniStr "$INSTDIR\${PRODUCT_NAME}.url" "InternetShortcut" "URL" "${PRODUCT_WEB_SITE}"

  CreateDirectory "$SMPROGRAMS\cdmserver"

  CreateShortCut "$SMPROGRAMS\cdmserver\Website.lnk" "$INSTDIR\${PRODUCT_NAME}.url"

  CreateShortCut "$SMPROGRAMS\cdmserver\Uninstall.lnk" "$INSTDIR\uninst.exe"

  CreateShortCut "$SMPROGRAMS\cdmserver\cdmserver.lnk" "$INSTDIR\bin\cdmserver.exe"

SectionEnd

Section -Post

  WriteUninstaller "$INSTDIR\uninst.exe"

  WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "DisplayName" "$(^Name)"

  WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "UninstallString" "$INSTDIR\uninst.exe"

  WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "DisplayVersion" "${PRODUCT_VERSION}"

  WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "URLInfoAbout" "${PRODUCT_WEB_SITE}"

  WriteRegStr ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}" "Publisher" "${PRODUCT_PUBLISHER}"

SectionEnd

Function un.onUninstSuccess

  HideWindow

  MessageBox MB_ICONINFORMATION|MB_OK "$(^Name) was successfully removed from your computer."

FunctionEnd

Function un.onInit

!insertmacro MUI_UNGETLANGUAGE

  MessageBox MB_ICONQUESTION|MB_YESNO|MB_DEFBUTTON2 "Are you sure you want to completely remove $(^Name) and all of its components?" IDYES +2

  Abort

FunctionEnd

Section Uninstall

  Delete "$INSTDIR\${PRODUCT_NAME}.url"

  Delete "$INSTDIR\uninst.exe"

  ;Delete "$INSTDIR\logs\cdmserverLog.txt"

  Delete "$INSTDIR\license\${COPYRIGHT_FILE_NAME}"

  Delete "$INSTDIR\libs\${JAR_FILE_NAME}"

  Delete "$INSTDIR\libs\.cdmLibrary\datasources.xml"

  Delete "$INSTDIR\bin\cdmserver.bat"

  Delete "$INSTDIR\bin\cdmserver.exe"

  Delete "$SMPROGRAMS\cdmserver\Uninstall.lnk"

  Delete "$SMPROGRAMS\cdmserver\Website.lnk"

  Delete "$SMPROGRAMS\cdmserver\cdmserver.lnk"

  RMDir "$SMPROGRAMS\cdmserver"

  RMDir "$INSTDIR\logs"

  RMDir "$INSTDIR\license"

  RMDir "$INSTDIR\libs\.cdmLibrary"

  RMDir "$INSTDIR\libs"

  RMDir "$INSTDIR\bin"

  Delete "$PROFILE\.cdmLibrary\datasources.xml"

  RMDir "$PROFILE\.cdmLibrary"

  DeleteRegKey ${PRODUCT_UNINST_ROOT_KEY} "${PRODUCT_UNINST_KEY}"

  SetAutoClose true

SectionEnd

cd ..

set HOME=%cd%

java -Xmx1024M -jar "%HOME%\libs\cdm-server-2.5.jar"

// $Id$

/**

 * Copyright (C) 2009 EDIT

 * European Distributed Institute of Taxonomy 

 * http://www.e-taxonomy.eu

 * 

 * The contents of this file are subject to the Mozilla Public License Version 1.1

 * See LICENSE.TXT at the top of this package for the full license terms.

 */

package eu.etaxonomy.cdm.server;

import static eu.etaxonomy.cdm.server.CommandOptions.DATASOURCES_FILE;

import static eu.etaxonomy.cdm.server.CommandOptions.HELP;

import static eu.etaxonomy.cdm.server.CommandOptions.HTTP_PORT;

import static eu.etaxonomy.cdm.server.CommandOptions.JMX;

import static eu.etaxonomy.cdm.server.CommandOptions.WEBAPP;

import java.io.File;

import java.io.FileNotFoundException;

import java.io.FileOutputStream;

import java.io.IOException;

import java.io.InputStream;

import java.io.OutputStream;

import java.lang.management.ManagementFactory;

import java.lang.reflect.InvocationTargetException;

import java.net.URL;

import java.sql.Connection;

import java.sql.SQLException;

import java.util.Set;

import javax.naming.NamingException;

import javax.sql.DataSource;

import org.apache.commons.cli.CommandLine;

import org.apache.commons.cli.CommandLineParser;

import org.apache.commons.cli.GnuParser;

import org.apache.commons.cli.HelpFormatter;

import org.apache.commons.cli.ParseException;

import org.apache.commons.io.FileUtils;

import org.apache.log4j.Logger;

import org.apache.log4j.PatternLayout;

import org.apache.log4j.RollingFileAppender;

import org.eclipse.jetty.jmx.MBeanContainer;

import org.eclipse.jetty.server.Server;

import org.eclipse.jetty.server.handler.ContextHandlerCollection;

import org.eclipse.jetty.util.component.LifeCycle;

import org.eclipse.jetty.util.log.Log;

import org.eclipse.jetty.webapp.WebAppClassLoader;

import org.eclipse.jetty.webapp.WebAppContext;

import eu.etaxonomy.cdm.server.CdmInstanceProperties.Status;

/**

 * A bootstrap class for starting Jetty Runner using an embedded war.

 * 

 * Recommended start options for the java virtual machine: 

 * <pre>

 * -Xmx1024M

 * 

 * -XX:PermSize=128m 

 * -XX:MaxPermSize=192m

 * 

 * -XX:+UseConcMarkSweepGC 

 * -XX:+CMSClassUnloadingEnabled

 * -XX:+CMSPermGenSweepingEnabled

 * </pre>

 * 

 * @version $Revision$

 */

public final class Bootloader {

	//private static final String DEFAULT_WARFILE = "target/";

	private static final Logger logger = Logger.getLogger(Bootloader.class);

	private static final String DATASOURCE_BEANDEF_FILE = "datasources.xml";

	private static final String USERHOME_CDM_LIBRARY_PATH = System.getProperty("user.home")+File.separator+".cdmLibrary"+File.separator;

	private static final String TMP_PATH = USERHOME_CDM_LIBRARY_PATH + "server" + File.separator;

	private static final String LOG_PATH = USERHOME_CDM_LIBRARY_PATH + "log" + File.separator;

	private static final String APPLICATION_NAME = "CDM Server";

    private static final String WAR_POSTFIX = ".war";

    private static final String CDM_WEBAPP_WAR_NAME = "cdmserver";

    private static final String DEFAULT_WEBAPP_WAR_NAME = "default-webapp";

    private static final File DEFAULT_WEBAPP_TEMP_FOLDER = new File(TMP_PATH + DEFAULT_WEBAPP_WAR_NAME);

    private static final File CDM_WEBAPP_TEMP_FOLDER = new File(TMP_PATH + CDM_WEBAPP_WAR_NAME);

    private static final String ATTRIBUTE_JDBC_JNDI_NAME = "cdm.jdbcJndiName";

    private static final String CDM_LOGFILE = "cdm.logfile";

    // memory requirements

    private static final long MB = 1024 * 1024;

    private static final long PERM_GEN_SPACE_PER_INSTANCE = 64 * MB;

    private static final long HEAP_PER_INSTANCE = 300 * MB;

    private static final int KB = 1024;

    private Set<CdmInstanceProperties> configAndStatus = null;

    public Set<CdmInstanceProperties> getConfigAndStatus() {

		return configAndStatus;

	}

	private File webappFile = null;

    private File defaultWebAppFile = null;

    private Server server = null;

    private ContextHandlerCollection contexts = new ContextHandlerCollection();

    private CommandLine cmdLine;

    /* thread save singleton implementation */

	private static Bootloader instance = new Bootloader();

    private Bootloader() {}

    public synchronized static Bootloader getBootloader(){

    	return instance;

    }

    /* end of singleton implementation */

    private Set<CdmInstanceProperties> loadDataSources(){

    	if(configAndStatus == null){

    		File datasourcesFile = new File(USERHOME_CDM_LIBRARY_PATH, DATASOURCE_BEANDEF_FILE); 

    		configAndStatus = DataSourcePropertyParser.parseDataSourceConfigs(datasourcesFile);

        	logger.info("cdm server instance names loaded: "+ configAndStatus.toString());

    	}

    	return configAndStatus;

    }

    public int writeStreamTo(final InputStream input, final OutputStream output, int bufferSize) throws IOException {

        int available = Math.min(input.available(), 256 * KB);

        byte[] buffer = new byte[Math.max(bufferSize, available)];

        int answer = 0;

        int count = input.read(buffer);

        while (count >= 0) {

            output.write(buffer, 0, count);

            answer += count;

            count = input.read(buffer);

        }

        return answer;

    }

	private boolean bindJndiDataSource(CdmInstanceProperties conf) {

		try {

			Class<DataSource> dsCass = (Class<DataSource>) Thread.currentThread().getContextClassLoader().loadClass("com.mchange.v2.c3p0.ComboPooledDataSource");

			DataSource datasource = dsCass.newInstance();

			dsCass.getMethod("setDriverClass", new Class[] {String.class}).invoke(datasource, new Object[] {conf.getDriverClass()});

			dsCass.getMethod("setJdbcUrl", new Class[] {String.class}).invoke(datasource, new Object[] {conf.getUrl()});

			dsCass.getMethod("setUser", new Class[] {String.class}).invoke(datasource, new Object[] {conf.getUsername()});

			dsCass.getMethod("setPassword", new Class[] {String.class}).invoke(datasource, new Object[] {conf.getPassword()});

			Connection connection = null;

			String sqlerror = null;

			try {

				connection = datasource.getConnection();

				connection.close();

			} catch (SQLException e) {

				sqlerror = e.getMessage() + "["+ e.getSQLState() + "]";

				conf.getProblems().add(sqlerror);

				if(connection !=  null){

					try {connection.close();} catch (SQLException e1) { /* IGNORE */ }

				}

				logger.error(conf.toString() + " has problem : "+ sqlerror );

			}

			if(!conf.hasProblems()){

				logger.info("binding jndi datasource at " + conf.getJdbcJndiName() + " with "+conf.getUsername() +"@"+ conf.getUrl());

				org.eclipse.jetty.plus.jndi.Resource jdbcResource = new org.eclipse.jetty.plus.jndi.Resource(conf.getJdbcJndiName(), datasource);

				return true;				

			}

		} catch (IllegalArgumentException e) {

			logger.error(e);

			e.printStackTrace();

		} catch (SecurityException e) {

			logger.error(e);

		} catch (ClassNotFoundException e) {

			logger.error(e);

		} catch (InstantiationException e) {

			logger.error(e);

		} catch (IllegalAccessException e) {

			logger.error(e);

		} catch (InvocationTargetException e) {

			logger.error(e);

		} catch (NoSuchMethodException e) {

			logger.error(e);

		} catch (NamingException e) {

			logger.error(e);

		}

		return false;

	}

	private void parseCommandOptions(String[] args) throws ParseException {

		CommandLineParser parser = new GnuParser();

		cmdLine = parser.parse( CommandOptions.getOptions(), args );

		 // print the help message

		 if(cmdLine.hasOption(HELP.getOpt())){

			 HelpFormatter formatter = new HelpFormatter();

			 formatter.printHelp( "java .. ", CommandOptions.getOptions() );

			 System.exit(0);

		 }

	}

	private File extractWar(String warName) throws IOException, FileNotFoundException {

		ClassLoader classLoader = Thread.currentThread().getContextClassLoader();

		String warFileName = warName + WAR_POSTFIX;

    	URL resource = classLoader.getResource(warFileName);

    	if (resource == null) {

    		logger.error("Could not find the " + warFileName + " on classpath!");

    		System.exit(1);

    	}

    	File warFile = new File(TMP_PATH, warName + "-" + WAR_POSTFIX);

    	logger.info("Extracting " + warFileName + " to " + warFile + " ...");

    	writeStreamTo(resource.openStream(), new FileOutputStream(warFile), 8 * KB);

    	logger.info("Extracted " + warFileName);

		return warFile;

	}

	/**

	 * MAIN METHOD

	 * 

	 * @param args

	 * @throws Exception

	 */

	public static void main(String[] args) throws Exception {

		Bootloader bootloader = Bootloader.getBootloader();