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c70b93c3
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Andreas Kohlbecker
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<?php
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f19f47fa
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Andreas Kohlbecker
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/**
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* @file
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* Page functions.
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*
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* @copyright
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* (C) 2007-2012 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this module are subject to the Mozilla
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* Public License Version 1.1.
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c70b93c3
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Andreas Kohlbecker
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* @see http://www.mozilla.org/MPL/MPL-1.1.html
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*
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* @author
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f19f47fa
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Andreas Kohlbecker
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* - Andreas Kohlbecker <a.kohlbecker@BGBM.org>
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*/
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/**
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| 21 |
02e8615c
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Andreas Kohlbecker
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* Composes a render array representing the ocurrences associetad with the $taxon.
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| 22 |
f19f47fa
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Andreas Kohlbecker
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*
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* The resulting render array contains two elements:
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* - 'map': A map showing all point locations of the occurences is availabale
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* - 'specimen_list': the list of occurences prepated as table for theme_table()
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*
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* @param object $taxon
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* A cdm Taxon object
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* @return
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* A render array suitable for drupal_render()
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*
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02e8615c
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Andreas Kohlbecker
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* @ingroup Compose
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*
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c70b93c3
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Andreas Kohlbecker
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*/
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02e8615c
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Andreas Kohlbecker
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function compose_cdm_taxon_page_specimens($taxon) {
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f19f47fa
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Andreas Kohlbecker
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1ce9afb7
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Patric Plitzner
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$render_array = array();
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RenderHints::pushToRenderStack('taxon_page_specimens');
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| 39 |
30f78c59
|
Andreas Kohlbecker
|
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961319fe
|
Andreas Kohlbecker
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$fieldUnitDTOs = null;
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$specimensOrObservations = null;
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| 42 |
276f39f6
|
Katja Luther
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if (variable_get('cdm_dataportal_specimen_derivate_tree')){
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| 43 |
961319fe
|
Andreas Kohlbecker
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// get fieldUnitDTOs
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a0be8d7e
|
Andreas Kohlbecker
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$fieldUnitDTOs = cdm_ws_get(CDM_WS_TAXON_FIELDUNIT_DTOS, array( $taxon->uuid));
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| 45 |
961319fe
|
Andreas Kohlbecker
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$fieldUnitDTOs = order_fieldUnitDtos_by_date_and_type($fieldUnitDTOs);
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} else {
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// $specimensOrObservations = cdm_ws_get(CDM_WS_TAXON, array( $taxon->uuid, 'specimensOrObservations'));
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// extend by associated taxas occurrences
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$relationship_filter_query_parameters = relationship_filter_query_parameters();
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if (isset($_REQUEST['pager']) && is_array($_REQUEST['pager'])) {
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$relationship_filter_query_parameters = array_merge($relationship_filter_query_parameters, $_REQUEST['pager']);
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}
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$by_associatedtaxon_query = http_build_query($relationship_filter_query_parameters);
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$pager = cdm_ws_get(CDM_WS_OCCURRENCE_BY_ASSOCIATEDTAXON,
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null,
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$by_associatedtaxon_query . '&taxonUuid=' . $taxon->uuid
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);
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$specimensOrObservations = array();
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if (isset($pager->records[0])) {
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$specimensOrObservations = $pager->records;
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}
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// cdm_ws_get(CDM_WS_OCCURRENCE_FIELDUNIT_DTO_BY_ASSOCIATEDTAXON,
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// null,
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// $by_associatedtaxon_query . '&taxonUuid=' . $taxon->uuid
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// );
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// $specimensOrObservations = array();
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// if(isset($pager->records[0])){
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// $specimensOrObservations = $pager->records;
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// }
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// Collect media (fieldObjectMedia, derivedUnitMedia) and add as a custom field
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foreach ($specimensOrObservations as &$occurrence) {
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$occurrence->_fieldObjectMedia = cdm_ws_get(CDM_WS_DERIVEDUNIT_FACADE, array(
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$occurrence->uuid,
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'fieldObjectMediaDTO',
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));
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$occurrence->_derivedUnitMedia = cdm_ws_get(CDM_WS_DERIVEDUNIT_FACADE, array(
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$occurrence->uuid,
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'derivedUnitMedia',
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));
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}
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$specimensOrObservations = order_specimens_or_observations_by_date_and_type($specimensOrObservations);
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| 84 |
7965ef92
|
Katja Luther
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}
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| 85 |
b8afc4bb
|
Patric Plitzner
|
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b5c89485
|
Patric Plitzner
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// --- get map service HTTP query parameters
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| 87 |
961319fe
|
Andreas Kohlbecker
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if (count($specimensOrObservations) > 0 || $fieldUnitDTOs > 0) {
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$render_array['map'] = occurrence_map_query_parameters($taxon);
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b8afc4bb
|
Patric Plitzner
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}
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db725031
|
Andreas Kohlbecker
|
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// -------------------------------------------------------
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106e1cf9
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Katja Luther
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1ce9afb7
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Patric Plitzner
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if(variable_get('cdm_dataportal_compressed_specimen_derivate_table')){
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//COMPRESSED SPECIMEN DERIVATE TABLE
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4cb163f8
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Patric Plitzner
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$associatedFieldUnitsQuery_parameters = array();
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if (isset($_REQUEST['pager']) && is_array($_REQUEST['pager'])) {
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$associatedFieldUnitsQuery_parameters = array_merge($associatedFieldUnitsQuery_parameters, $_REQUEST['pager']);
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}
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$by_associatedtaxon_query = http_build_query($associatedFieldUnitsQuery_parameters);
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09f028e2
|
Andreas Kohlbecker
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$pager_field_units = cdm_ws_get(CDM_WS_PORTAL_TAXON,
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2e82a602
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Patrick Plitzner
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array($taxon->uuid, 'associatedFieldUnits'),
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$by_associatedtaxon_query . '&pageSize=' . variable_get('cdm_dataportal_compressed_specimen_derivate_table_page_size')
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);
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1e87f89f
|
Andreas Kohlbecker
|
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| 107 |
09f028e2
|
Andreas Kohlbecker
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if (isset($pager_field_units->records[0])) {
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$field_unit_uuids = array();
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foreach ($pager_field_units->records as $field_unit) {
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$field_unit_uuids[] = $field_unit->uuid;
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}
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961319fe
|
Andreas Kohlbecker
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$render_array['derivate_hierarchy_table'] = compose_compressed_specimen_derivate_table($field_unit_uuids);
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02f3768c
|
Andreas Kohlbecker
|
}
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| 115 |
f19f47fa
|
Andreas Kohlbecker
|
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1e87f89f
|
Andreas Kohlbecker
|
$render_array['pager'] = markup_to_render_array(
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theme('cdm_pager', array(
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'pager' => $pager_field_units,
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'path' => $_REQUEST['q'],
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'parameters' => $_REQUEST
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)),
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10 // weight
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);
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| 124 |
f19f47fa
|
Andreas Kohlbecker
|
}
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| 125 |
276f39f6
|
Katja Luther
|
else if(variable_get('cdm_dataportal_specimen_derivate_tree')){
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| 126 |
961319fe
|
Andreas Kohlbecker
|
$render_array['specimen_list'] = compose_specimen_table_top_down($fieldUnitDTOs);
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| 127 |
ae177dac
|
Andreas Kohlbecker
|
$render_array['specimen_list']['#weight'] = 2;
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| 128 |
961319fe
|
Andreas Kohlbecker
|
} else {
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| 129 |
84849c31
|
Andreas Kohlbecker
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$specimen_table = compose_specimens_table_bottom_up($specimensOrObservations);
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$render_array['specimen_list'] = $specimen_table;
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$render_array['pager'] = markup_to_render_array(
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theme('cdm_pager', array(
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'pager' => $pager,
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'path' => $_REQUEST['q'],
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'parameters' => $_REQUEST,
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)),
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10 // weight
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);
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}
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f19f47fa
|
Andreas Kohlbecker
|
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84849c31
|
Andreas Kohlbecker
|
RenderHints::popFromRenderStack();
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return $render_array;
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}
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| 146 |
1e87f89f
|
Andreas Kohlbecker
|
/**
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* @return array
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*
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| 149 |
961319fe
|
Andreas Kohlbecker
|
* TODO move to cdm_dataportal.module or api.module?
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| 150 |
1e87f89f
|
Andreas Kohlbecker
|
*/
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| 151 |
961319fe
|
Andreas Kohlbecker
|
function relationship_filter_query_parameters()
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| 152 |
1e87f89f
|
Andreas Kohlbecker
|
{
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| 153 |
961319fe
|
Andreas Kohlbecker
|
$relationship_choice = variable_get(CDM_AGGREGATE_BY_TAXON_RELATIONSHIPS, unserialize(CDM_AGGREGATE_BY_TAXON_RELATIONSHIPS_DEFAULT));
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$relationship_choice['direct'] = get_selection($relationship_choice['direct']);
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$relationship_choice['invers'] = get_selection($relationship_choice['invers']);
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| 156 |
1e87f89f
|
Andreas Kohlbecker
|
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| 157 |
961319fe
|
Andreas Kohlbecker
|
$by_associatedtaxon_query_parameters = array(
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'relationshipsInvers' => implode(',', $relationship_choice['invers']),
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'relationships' => implode(',', $relationship_choice['direct']),
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| 160 |
1e87f89f
|
Andreas Kohlbecker
|
);
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| 161 |
961319fe
|
Andreas Kohlbecker
|
return $by_associatedtaxon_query_parameters;
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| 162 |
1e87f89f
|
Andreas Kohlbecker
|
}
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| 163 |
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| 164 |
961319fe
|
Andreas Kohlbecker
|
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| 165 |
65a4de51
|
Patrick Plitzner
|
function create_html_link($link, $openInExternalWindow=false){
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| 166 |
7d8ef9fa
|
Patric Plitzner
|
$html = "";
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| 167 |
65a4de51
|
Patrick Plitzner
|
if($link->uri && $link->uri!=""){
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$html .= '<a href="' . $link->uri . '"';
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if($openInExternalWindow){
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$html .= ' target="_blank"';
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}
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$html .= '>' . $link->linkText . '</a>';
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| 173 |
7d8ef9fa
|
Patric Plitzner
|
}
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| 174 |
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else{
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$html .= $link->linkText;
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}
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return $html;
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}
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| 179 |
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| 180 |
|
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/**
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| 181 |
65a4de51
|
Patrick Plitzner
|
* Creates HTML links from the given link list concatenated by default by a comma.
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| 182 |
7d8ef9fa
|
Patric Plitzner
|
* @param $linkList the list with Link objects having "uri" and "linkText" as members
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| 183 |
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* @return string the assembled HTML string containing the links
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| 184 |
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*/
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| 185 |
65a4de51
|
Patrick Plitzner
|
function create_html_links($linkList, $openInExternalWindow=false, $separator=", ")
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| 186 |
7d8ef9fa
|
Patric Plitzner
|
{
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| 187 |
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$html = "";
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| 188 |
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if ($linkList) {
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| 189 |
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foreach ($linkList as $link) {
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| 190 |
65a4de51
|
Patrick Plitzner
|
$html .= create_html_link($link, $openInExternalWindow).$separator;
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| 191 |
7d8ef9fa
|
Patric Plitzner
|
}
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| 192 |
65a4de51
|
Patrick Plitzner
|
$html = rtrim($html, $separator);
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| 193 |
7d8ef9fa
|
Patric Plitzner
|
}
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| 194 |
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return $html;
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| 195 |
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}
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| 196 |
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| 197 |
00a8e4b6
|
Andreas Kohlbecker
|
/**
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| 198 |
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* Composes a taxon page which can consist of multiple parts like
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| 199 |
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* 'General', 'Synonymy', 'Images', 'Keys'. These parts can be displayed
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| 200 |
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* as tabs or as sections of a single page.
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*
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| 202 |
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* It is headed by the name of the accepted taxon without author and reference.
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*
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| 204 |
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* @param $taxon
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| 205 |
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* The CDM Taxon Instance to compose the page for.
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| 206 |
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* @param $page_part
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| 207 |
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* Name of the part to display, valid values are:
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| 208 |
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* - 'description' - for the general part
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| 209 |
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* - 'images'
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| 210 |
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* - 'synonymy'
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| 211 |
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* - 'keys'
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| 212 |
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* - 'all'
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| 213 |
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*
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| 214 |
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* @return array
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| 215 |
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* A drupal render array
|
| 216 |
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*
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| 217 |
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* @ingroup compose
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| 218 |
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*/
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| 219 |
|
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function compose_cdm_taxon_page($taxon, $page_part = 'description') {
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| 220 |
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| 221 |
0ae57522
|
Patric Plitzner
|
// we better cache here since drupal_get_query_parameters has no internal static cache variable
|
| 222 |
|
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$http_request_params = drupal_get_query_parameters();
|
| 223 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 224 |
0ae57522
|
Patric Plitzner
|
// add all mandatory js sources
|
| 225 |
|
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_add_js_footnotes();
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| 226 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 227 |
|
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| 228 |
0ae57522
|
Patric Plitzner
|
$render_array = array();
|
| 229 |
|
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$weight = 0; // the weight for the render array elements
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| 230 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 231 |
0ae57522
|
Patric Plitzner
|
$tabsToDisplay = variable_get('cdm_taxonpage_tabs_visibility', unserialize(TAXONPAGE_VISIBILITY_OPTIONS_DEFAULT));
|
| 232 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 233 |
0ae57522
|
Patric Plitzner
|
$page_part = variable_get('cdm_dataportal_taxonpage_tabs', 1) ? $page_part : 'all';
|
| 234 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 235 |
22383f95
|
Andreas Kohlbecker
|
$synonymy_as_tab = variable_get(CDM_SYNONYMY_AS_TAB, CDM_SYNONYMY_AS_TAB_DEFAULT) === 1;
|
| 236 |
|
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if(!$synonymy_as_tab){
|
| 237 |
|
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unset($tabsToDisplay["Synonymy"]);
|
| 238 |
3e6dfbb3
|
Andreas Kohlbecker
|
// the synonymy is located in the general part in this case
|
| 239 |
|
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if($page_part == 'synonymy'){
|
| 240 |
|
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$page_part = 'description';
|
| 241 |
|
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}
|
| 242 |
22383f95
|
Andreas Kohlbecker
|
}
|
| 243 |
|
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|
| 244 |
0ae57522
|
Patric Plitzner
|
$media = _load_media_for_taxon($taxon);
|
| 245 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 246 |
|
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|
| 247 |
0ae57522
|
Patric Plitzner
|
if (!isset($media[0]) || ($tabsToDisplay["Images"] == '0')) {
|
| 248 |
48a6d7e8
|
Andreas Kohlbecker
|
taxon_page_tabs_hidden_add('images');
|
| 249 |
0ae57522
|
Patric Plitzner
|
}
|
| 250 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 251 |
0ae57522
|
Patric Plitzner
|
// --- GET specimensOrObservations --- //
|
| 252 |
c10f70e4
|
Katja Luther
|
$specimensOrObservations = cdm_ws_get(CDM_WS_TAXON, array( $taxon->uuid, 'specimensOrObservationsCount'));
|
| 253 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 254 |
c10f70e4
|
Katja Luther
|
$specimensOrObservationsCount = $specimensOrObservations != null ? $specimensOrObservations->result : 0;
|
| 255 |
0ae57522
|
Patric Plitzner
|
if ($specimensOrObservationsCount == 0 || ($tabsToDisplay["Specimens"] == '0')) {
|
| 256 |
48a6d7e8
|
Andreas Kohlbecker
|
taxon_page_tabs_hidden_add('specimens');
|
| 257 |
0ae57522
|
Patric Plitzner
|
}
|
| 258 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 259 |
0ae57522
|
Patric Plitzner
|
// --- GET polytomousKeys --- //
|
| 260 |
|
|
$polytomousKeysPager = cdm_ws_get(CDM_WS_POLYTOMOUSKEY, NULL, "findByTaxonomicScope=$taxon->uuid");
|
| 261 |
|
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$identificationKeyCount = 0;
|
| 262 |
|
|
if ($polytomousKeysPager) {
|
| 263 |
|
|
$identificationKeyCount += $polytomousKeysPager->count;
|
| 264 |
|
|
}
|
| 265 |
|
|
if ($identificationKeyCount == 0 || ($tabsToDisplay["Keys"] == '0')) {
|
| 266 |
48a6d7e8
|
Andreas Kohlbecker
|
taxon_page_tabs_hidden_add('keys');
|
| 267 |
0ae57522
|
Patric Plitzner
|
}
|
| 268 |
092744e1
|
Andreas Kohlbecker
|
|
| 269 |
22383f95
|
Andreas Kohlbecker
|
// --- GET TaxonNodeAgentRelations --- //
|
| 270 |
|
|
$current_classification_uuid = get_current_classification_uuid();
|
| 271 |
|
|
$taxon_node_agent_relations_pager = cdm_ws_get(CDM_WS_PORTAL_TAXON_TAXONNODEAGENTRELATIONS,
|
| 272 |
|
|
array(
|
| 273 |
|
|
$taxon->uuid,
|
| 274 |
|
|
$current_classification_uuid,
|
| 275 |
|
|
),
|
| 276 |
|
|
"pageSize=1&pageIndex=0"// we are only interested into the count so we are fetching only one item, o is not possible!
|
| 277 |
|
|
);
|
| 278 |
|
|
if (!$taxon_node_agent_relations_pager || $taxon_node_agent_relations_pager->count == 0){
|
| 279 |
48a6d7e8
|
Andreas Kohlbecker
|
taxon_page_tabs_hidden_add('experts');
|
| 280 |
22383f95
|
Andreas Kohlbecker
|
}
|
| 281 |
7663cd0b
|
Andreas Kohlbecker
|
|
| 282 |
22383f95
|
Andreas Kohlbecker
|
if (!isset($tabsToDisplay["Synonymy"]) || $tabsToDisplay["Synonymy"] == '0') {
|
| 283 |
48a6d7e8
|
Andreas Kohlbecker
|
taxon_page_tabs_hidden_add('synonymy');
|
| 284 |
0ae57522
|
Patric Plitzner
|
}
|
| 285 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 286 |
0ae57522
|
Patric Plitzner
|
// -------------------------------------------- //
|
| 287 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 288 |
fe169cb6
|
Andreas Kohlbecker
|
if(variable_get(CDM_TAXONPAGE_TAXON_NODE_SHOW_STATES, 1) && ( $page_part == 'description' || $page_part == 'synonymy' || $page_part == 'all')){
|
| 289 |
bd56cbc1
|
Andreas Kohlbecker
|
$taxon_nodes = cdm_ws_get(CDM_WS_PORTAL_TAXON_TAXONNODES, array($taxon->uuid));
|
| 290 |
|
|
$render_array['taxon_node_status'] = compose_taxon_node_status($taxon_nodes);
|
| 291 |
|
|
$render_array['taxon_node_status']['#weight'] = -100;
|
| 292 |
|
|
}
|
| 293 |
|
|
|
| 294 |
0ae57522
|
Patric Plitzner
|
if (variable_get('cdm_dataportal_display_is_accepted_for', CDM_DATAPORTAL_DISPLAY_IS_ACCEPTED_FOR) && isset($_REQUEST['acceptedFor'])) {
|
| 295 |
7272d19c
|
Andreas Kohlbecker
|
$render_array['accepted_for'] = markup_to_render_array(cdm_accepted_for($_REQUEST['acceptedFor']), $weight++);
|
| 296 |
0ae57522
|
Patric Plitzner
|
}
|
| 297 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 298 |
0ae57522
|
Patric Plitzner
|
// --- PAGE PART: DESCRIPTION --- //
|
| 299 |
48a6d7e8
|
Andreas Kohlbecker
|
if (!taxon_page_tabs_hidden_check('description') && ($page_part == 'description' || $page_part == 'all')) {
|
| 300 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 301 |
0ae57522
|
Patric Plitzner
|
$merged_tree = merged_taxon_feature_tree($taxon);
|
| 302 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 303 |
7d8ef9fa
|
Patric Plitzner
|
|
| 304 |
22383f95
|
Andreas Kohlbecker
|
$render_array['general'] = compose_cdm_taxon_page_profile($taxon, $merged_tree, $media, !$synonymy_as_tab);
|
| 305 |
0ae57522
|
Patric Plitzner
|
$render_array['general']['#weight'] = $weight++;
|
| 306 |
|
|
$render_array['general']['#prefix'] = '<div id="general" class="page-part">';
|
| 307 |
|
|
$render_array['general']['#suffix'] = '</div>';
|
| 308 |
|
|
}
|
| 309 |
7d8ef9fa
|
Patric Plitzner
|
|
| 310 |
0ae57522
|
Patric Plitzner
|
// --- PAGE PART: IMAGES --- //
|
| 311 |
48a6d7e8
|
Andreas Kohlbecker
|
if (!taxon_page_tabs_hidden_check('images') && ($page_part == 'images' || $page_part == 'all')) {
|
| 312 |
0ae57522
|
Patric Plitzner
|
$images_html = '<div id="images" class="page-part">';
|
| 313 |
|
|
if ($page_part == 'all') {
|
| 314 |
4feeabc7
|
Andreas Kohlbecker
|
$images_html .= '<h2>' . t(cdm_taxonpage_tab_label('Images')) . '</h2>';
|
| 315 |
7d8ef9fa
|
Patric Plitzner
|
}
|
| 316 |
0ae57522
|
Patric Plitzner
|
// Get the image gallery as configured by the admin.
|
| 317 |
a1f7edc0
|
Andreas Kohlbecker
|
$configured_image_gallery_viewer = variable_get(CDM_MEDIA_GALLERY_VIEWER, CDM_MEDIA_GALLERY_VIEWER_DEFAULT);
|
| 318 |
|
|
if($configured_image_gallery_viewer != 'fsi'){
|
| 319 |
|
|
$images_html .= render_taxon_media_gallery($taxon, $configured_image_gallery_viewer, $media);
|
| 320 |
|
|
} else {
|
| 321 |
8f4eb9ce
|
Andreas Kohlbecker
|
// the fsi_gallery requires a flash plugin, in case the client browser is not supporting
|
| 322 |
|
|
// flash we also need to provide an the default gallery as alternative
|
| 323 |
a1f7edc0
|
Andreas Kohlbecker
|
$images_html .= render_taxon_media_gallery($taxon, CDM_MEDIA_GALLERY_VIEWER_DEFAULT, $media);
|
| 324 |
|
|
$images_html .= render_taxon_media_gallery($taxon, $configured_image_gallery_viewer, $media);
|
| 325 |
8f4eb9ce
|
Andreas Kohlbecker
|
}
|
| 326 |
a1f7edc0
|
Andreas Kohlbecker
|
$images_html .= '</div>'; // END of <div id="images">
|
| 327 |
0ae57522
|
Patric Plitzner
|
$render_array['images'] = markup_to_render_array($images_html, $weight++);
|
| 328 |
|
|
}
|
| 329 |
7d8ef9fa
|
Patric Plitzner
|
|
| 330 |
0ae57522
|
Patric Plitzner
|
// --- PAGE PART: SYNONYMY --- //
|
| 331 |
48a6d7e8
|
Andreas Kohlbecker
|
if (!taxon_page_tabs_hidden_check('synonymy') && (($page_part == 'synonymy' || $page_part == 'all') && $synonymy_as_tab)) {
|
| 332 |
0ae57522
|
Patric Plitzner
|
$synonymy_html = '<div id="synonymy" class="page-part">';
|
| 333 |
|
|
if ($page_part == 'all') {
|
| 334 |
4feeabc7
|
Andreas Kohlbecker
|
$synonymy_html .= '<h2>' . t(cdm_taxonpage_tab_label('Synonymy')) . '</h2>';
|
| 335 |
00a8e4b6
|
Andreas Kohlbecker
|
}
|
| 336 |
aec9ca7d
|
Andreas Kohlbecker
|
$addAcceptedTaxon = variable_get(CDM_DATAPORTAL_NOMREF_IN_TITLE, CDM_DATAPORTAL_NOMREF_IN_TITLE_DEFAULT);
|
| 337 |
41b4bfc9
|
Andreas Kohlbecker
|
|
| 338 |
1cda248c
|
Andreas Kohlbecker
|
$synonym_a = compose_cdm_taxon_page_synonymy($taxon, $addAcceptedTaxon);
|
| 339 |
|
|
$synonymy_html .= drupal_render($synonym_a);
|
| 340 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 341 |
0ae57522
|
Patric Plitzner
|
$synonymy_html .= '</div>';
|
| 342 |
|
|
$render_array['synonymy'] = markup_to_render_array($synonymy_html, $weight++);
|
| 343 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 344 |
0ae57522
|
Patric Plitzner
|
}
|
| 345 |
00a8e4b6
|
Andreas Kohlbecker
|
|
| 346 |
0ae57522
|
Patric Plitzner
|
// --- PAGE PART: SPECIMENS --- //
|
| 347 |
48a6d7e8
|
Andreas Kohlbecker
|
if (!taxon_page_tabs_hidden_check('specimens') && ($specimensOrObservationsCount > 0 && ($page_part == 'specimens' || $page_part == 'all'))) {
|
| 348 |
0ae57522
|
Patric Plitzner
|
$render_array['specimens'] = array(
|
| 349 |
4feeabc7
|
Andreas Kohlbecker
|
'#prefix' => '<div id="specimens" class="page-part">' . ($page_part == 'all' ? '<h2>' . t(cdm_taxonpage_tab_label('Specimens')) . '</h2>' : ''),
|
| 350 |
02e8615c
|
Andreas Kohlbecker
|
'content' => compose_cdm_taxon_page_specimens($taxon), // returns render array
|
| 351 |
0ae57522
|
Patric Plitzner
|
'#suffix' => '</div>',
|
| 352 |
|
|
);
|
| 353 |
|
|
}
|
| 354 |
|
|
|
| 355 |
|
|
// --- PAGE PART: KEYS --- //
|
| 356 |
48a6d7e8
|
Andreas Kohlbecker
|
if(!taxon_page_tabs_hidden_check('keys')){
|
| 357 |
|
|
if ($identificationKeyCount == 1 && $page_part == 'keys'){
|
| 358 |
|
|
drupal_goto(path_to_key($polytomousKeysPager->records[0]->class, $polytomousKeysPager->records[0]->uuid));
|
| 359 |
|
|
}
|
| 360 |
|
|
else if ($identificationKeyCount > 0 && ($page_part == 'keys' || $page_part == 'all')) {
|
| 361 |
|
|
$keys_html = '<div id="keys" class="page-part">';
|
| 362 |
|
|
if ($page_part == 'all') {
|
| 363 |
|
|
$keys_html .= '<h2>' . t(cdm_taxonpage_tab_label('Keys')) . '</h2>';
|
| 364 |
|
|
}
|
| 365 |
|
|
$keys_html .= theme('cdm_block_IdentificationKeys', array('taxonUuid' => $taxon->uuid));
|
| 366 |
|
|
$keys_html .= '</div>';
|
| 367 |
|
|
$render_array['keys'] = markup_to_render_array($keys_html, $weight++);
|
| 368 |
0ae57522
|
Patric Plitzner
|
}
|
| 369 |
|
|
}
|
| 370 |
|
|
|
| 371 |
7663cd0b
|
Andreas Kohlbecker
|
// --- PAGE PART: EXPERTS --- //
|
| 372 |
|
|
|
| 373 |
48a6d7e8
|
Andreas Kohlbecker
|
if (!taxon_page_tabs_hidden_check('experts') && ($page_part == 'experts' || $page_part == 'all')) {
|
| 374 |
7663cd0b
|
Andreas Kohlbecker
|
$render_array['experts'] = array(
|
| 375 |
4feeabc7
|
Andreas Kohlbecker
|
'#prefix' => '<div id="experts" class="page-part">' . ($page_part == 'all' ? '<h2>' . t(cdm_taxonpage_tab_label('Experts')) . '</h2>' : ''),
|
| 376 |
7663cd0b
|
Andreas Kohlbecker
|
'content' => compose_cdm_taxon_page_experts($taxon), // returns render array
|
| 377 |
|
|
'#suffix' => '</div>',
|
| 378 |
|
|
);
|
| 379 |
|
|
}
|
| 380 |
|
|
|
| 381 |
|
|
// ------------------ END OF PARTS -------------- //
|
| 382 |
0ae57522
|
Patric Plitzner
|
|
| 383 |
|
|
// adjust weights of page and toc elements according to the settings
|
| 384 |
4feeabc7
|
Andreas Kohlbecker
|
$taxontabs_weights = get_array_variable_merged(CDM_TAXONPAGE_TAB_WEIGHT, CDM_TAXONPAGE_TAB_WEIGHT_DEFAULT);
|
| 385 |
0ae57522
|
Patric Plitzner
|
foreach($taxontabs_weights as $tab_key => $weight){
|
| 386 |
|
|
if(isset($render_array[$tab_key])){
|
| 387 |
|
|
$render_array[$tab_key]['#weight'] = $weight;
|
| 388 |
|
|
}
|
| 389 |
|
|
}
|
| 390 |
|
|
|
| 391 |
|
|
|
| 392 |
2203967c
|
Andreas Kohlbecker
|
// set up the TOC and pseudo feature blocks for the pages which contain all page parts
|
| 393 |
|
|
if($page_part == 'all' && (!isset( $render_array['general']) || count($render_array['general']) == 0 )) {
|
| 394 |
9b8eb609
|
Andreas Kohlbecker
|
|
| 395 |
|
|
$bibliography_block = make_bibliography_feature_block();
|
| 396 |
|
|
if($bibliography_block){
|
| 397 |
2203967c
|
Andreas Kohlbecker
|
$render_array['bibliography_block'] = _block_get_renderable_array([$bibliography_block]);
|
| 398 |
9b8eb609
|
Andreas Kohlbecker
|
$render_array['bibliography_block']['#weight'] = 100;
|
| 399 |
|
|
cdm_toc_list_add_item('Bibliography', 'bibliography', null, false, $render_array['bibliography_block']['#weight']);
|
| 400 |
|
|
}
|
| 401 |
|
|
|
| 402 |
aec9ca7d
|
Andreas Kohlbecker
|
$toc_elements = [];
|
| 403 |
0ae57522
|
Patric Plitzner
|
asort($taxontabs_weights);
|
| 404 |
|
|
foreach(array_keys($taxontabs_weights) as $tab_key){
|
| 405 |
|
|
if(isset($render_array[$tab_key])){
|
| 406 |
|
|
if($tab_key != 'general'){
|
| 407 |
|
|
// add entry for page part
|
| 408 |
|
|
$toc_elements[] = array(
|
| 409 |
4feeabc7
|
Andreas Kohlbecker
|
'data' => l(t(cdm_taxonpage_tab_label(ucfirst($tab_key))), $_GET['q'], array('fragment' => $tab_key, 'query' => $http_request_params)),
|
| 410 |
0ae57522
|
Patric Plitzner
|
'class' => array('page-part-toc-item-' . $tab_key)
|
| 411 |
|
|
);
|
| 412 |
|
|
} else {
|
| 413 |
|
|
// add content of profile part instead
|
| 414 |
|
|
if(isset($render_array['general'])) {
|
| 415 |
|
|
// in case all tabs are shown at once the feature tocs
|
| 416 |
|
|
// should be integrated into the tabs toc as sub list
|
| 417 |
|
|
// and the profile image should be on top of the page
|
| 418 |
|
|
if(isset($render_array['general']['taxon_description_feature_toc'])){;
|
| 419 |
|
|
foreach ($render_array['general']['taxon_description_feature_toc']['#items'] as $profile_toc_item){
|
| 420 |
|
|
$toc_elements[] = $profile_toc_item;
|
| 421 |
7d8ef9fa
|
Patric Plitzner
|
}
|
| 422 |
0ae57522
|
Patric Plitzner
|
unset($render_array['general']['taxon_description_feature_toc']);
|
| 423 |
|
|
}
|
| 424 |
|
|
}
|
| 425 |
7d8ef9fa
|
Patric Plitzner
|
}
|
| 426 |
0ae57522
|
Patric Plitzner
|
}
|
| 427 |
|
|
}
|
| 428 |
7d8ef9fa
|
Patric Plitzner
|
|
| 429 |
0ae57522
|
Patric Plitzner
|
// move profile image in page structure
|
| 430 |
|
|
if(isset($render_array['general']['taxon_profile_image'])){
|
| 431 |
|
|
$render_array['profile_image'] = $render_array['general']['taxon_profile_image'];
|
| 432 |
|
|
$render_array['profile_image']['#weight'] = -100;
|
| 433 |
|
|
unset($render_array['general']['taxon_profile_image']);
|
| 434 |
7d8ef9fa
|
Patric Plitzner
|
}
|
| 435 |
|
|
|
| 436 |
0ae57522
|
Patric Plitzner
|
// finally add the table of contents to the render array
|
| 437 |
|
|
$render_array['toc'] = array(
|
| 438 |
|
|
'#theme' => 'item_list',
|
| 439 |
|
|
'#items' => $toc_elements,
|
| 440 |
|
|
'#title' => t('Content'),
|
| 441 |
|
|
'#weight' => -101,
|
| 442 |
|
|
'#suffix' => '</div>',
|
| 443 |
|
|
'#prefix'=> '<div id="page-toc">'
|
| 444 |
|
|
);
|
| 445 |
aec9ca7d
|
Andreas Kohlbecker
|
|
| 446 |
0ae57522
|
Patric Plitzner
|
}
|
| 447 |
|
|
|
| 448 |
7d8ef9fa
|
Patric Plitzner
|
|
| 449 |
0ae57522
|
Patric Plitzner
|
return $render_array;
|
| 450 |
00a8e4b6
|
Andreas Kohlbecker
|
}
|
| 451 |
|
|
|
| 452 |
1ce9afb7
|
Patric Plitzner
|
/**
|
| 453 |
22f5e82d
|
Andreas Kohlbecker
|
* TODO should this function really be a compose function?
|
| 454 |
|
|
* For a compose function must there always be a theme function with the same name? (ak 8.8.2013)
|
| 455 |
bf97c2e8
|
Andreas Kohlbecker
|
*
|
| 456 |
|
|
* composes and returns an render array containing the components of the taxon profile tab:
|
| 457 |
|
|
* - 'taxon_profile_image'
|
| 458 |
|
|
* - 'taxon_description_feature_toc'
|
| 459 |
|
|
* - 'taxon_description_features'
|
| 460 |
|
|
*
|
| 461 |
|
|
*
|
| 462 |
8a1b451e
|
Andreas Kohlbecker
|
* @param object taxon
|
| 463 |
|
|
* @param object $merged_tree
|
| 464 |
|
|
* @param object media
|
| 465 |
|
|
* @param bool $add_synonymy
|
| 466 |
bf97c2e8
|
Andreas Kohlbecker
|
*
|
| 467 |
|
|
* @return array
|
| 468 |
f78fda81
|
Andreas Kohlbecker
|
* A Drupal render array with the following elements:
|
| 469 |
bf97c2e8
|
Andreas Kohlbecker
|
* - 'taxon_profile_image'
|
| 470 |
|
|
* - 'taxon_description_feature_toc'
|
| 471 |
|
|
* - 'taxon_description_features'
|
| 472 |
|
|
*
|
| 473 |
8a1b451e
|
Andreas Kohlbecker
|
* @throws Exception
|
| 474 |
|
|
*
|
| 475 |
bf97c2e8
|
Andreas Kohlbecker
|
* @ingroup compose
|
| 476 |
|
|
*/
|
| 477 |
22383f95
|
Andreas Kohlbecker
|
function compose_cdm_taxon_page_profile($taxon, $merged_tree, $media, $add_synonymy) {
|
| 478 |
bf97c2e8
|
Andreas Kohlbecker
|
|
| 479 |
0ae57522
|
Patric Plitzner
|
$render_array = array();
|
| 480 |
|
|
|
| 481 |
|
|
$taxon_profile_image_settings = variable_get(CDM_TAXON_PROFILE_IMAGE, unserialize(CDM_TAXON_PROFILE_IMAGE_DEFAULT));
|
| 482 |
|
|
|
| 483 |
|
|
$hide_taxon_profile_image = FALSE;
|
| 484 |
|
|
if (variable_get('image_hide_rank', '0') != '0' && isset($taxon->name->rank->uuid)) {
|
| 485 |
|
|
$rankCompare = rank_compare($taxon->name->rank->uuid, variable_get('image_hide_rank', '-99'));
|
| 486 |
|
|
$hide_taxon_profile_image = ($rankCompare > -1);
|
| 487 |
|
|
}
|
| 488 |
|
|
|
| 489 |
|
|
if ($taxon_profile_image_settings['show'] && !$hide_taxon_profile_image) {
|
| 490 |
|
|
|
| 491 |
|
|
$representationPart = new stdClass();
|
| 492 |
|
|
$attributes = array();
|
| 493 |
02faa087
|
Andreas Kohlbecker
|
if (isset($media[0])) {
|
| 494 |
|
|
// due to a bug the portal/taxon/{uuid}/media service only delivers a filtered media object
|
| 495 |
|
|
// which only contains the thumbnail representation even if the height and width filters are not set.
|
| 496 |
673929dd
|
Andreas Kohlbecker
|
// -->
|
| 497 |
02faa087
|
Andreas Kohlbecker
|
$preferred_media = cdm_ws_get(CDM_WS_MEDIA, $media[0]->uuid);
|
| 498 |
|
|
$preferred_representations = cdm_preferred_media_representations($preferred_media, array(
|
| 499 |
|
|
'image/jpg',
|
| 500 |
|
|
'image/jpeg',
|
| 501 |
|
|
'image/png',
|
| 502 |
|
|
'image/gif',
|
| 503 |
|
|
),
|
| 504 |
|
|
$taxon_profile_image_settings['maxextend'],
|
| 505 |
|
|
$taxon_profile_image_settings['maxextend']
|
| 506 |
|
|
);
|
| 507 |
|
|
if(count($preferred_representations) > 0){
|
| 508 |
|
|
|
| 509 |
|
|
$representation = array_shift($preferred_representations);
|
| 510 |
|
|
$representationPart = $representation->parts[0];
|
| 511 |
|
|
$attributes['alt'] = $representationPart->uri;
|
| 512 |
|
|
|
| 513 |
|
|
if (!empty($taxon_profile_image_settings['media_uri_query'])) {
|
| 514 |
|
|
$representationPart->uri = $representationPart->uri
|
| 515 |
|
|
. (strpos($representationPart->uri, '?') !== FALSE ? '&' : '?')
|
| 516 |
|
|
. $taxon_profile_image_settings['media_uri_query'];
|
| 517 |
|
|
}
|
| 518 |
0ae57522
|
Patric Plitzner
|
}
|
| 519 |
|
|
}
|
| 520 |
|
|
else {
|
| 521 |
9506fd1f
|
Andreas Kohlbecker
|
if ($taxon_profile_image_settings['custom_placeholder_enabled']) {
|
| 522 |
ca47ea76
|
Andreas Kohlbecker
|
// show placeholder image instead
|
| 523 |
|
|
if (!empty($taxon_profile_image_settings['custom_placeholder_image_on']) && !empty($taxon_profile_image_settings['custom_placeholder_image_fid'])) {
|
| 524 |
|
|
// use the user provided image
|
| 525 |
|
|
$profile_image_file = file_load($taxon_profile_image_settings['custom_placeholder_image_fid']);
|
| 526 |
|
|
$url = file_create_url($profile_image_file->uri);
|
| 527 |
|
|
$image_info = image_get_info($profile_image_file->uri);
|
| 528 |
|
|
$representationPart->width = $image_info['width'];
|
| 529 |
|
|
$representationPart->height = $image_info['height'];
|
| 530 |
|
|
$representationPart->uri = $url;
|
| 531 |
|
|
}
|
| 532 |
|
|
else {
|
| 533 |
|
|
// use the hard coded default
|
| 534 |
|
|
$representationPart->width = 184;
|
| 535 |
|
|
$representationPart->height = 144;
|
| 536 |
|
|
$representationPart->uri = base_path() . drupal_get_path('module',
|
| 537 |
|
|
'cdm_dataportal') . '/images/no_picture.png';
|
| 538 |
|
|
}
|
| 539 |
|
|
$attributes['alt'] = "no image available";
|
| 540 |
0ae57522
|
Patric Plitzner
|
}
|
| 541 |
|
|
}
|
| 542 |
|
|
|
| 543 |
ca47ea76
|
Andreas Kohlbecker
|
if (isset($representationPart->uri)) {
|
| 544 |
a9815578
|
Andreas Kohlbecker
|
$profile_image = cdm_media_gallerie_image($representationPart, $taxon_profile_image_settings['maxextend'], FALSE, $attributes);
|
| 545 |
ca47ea76
|
Andreas Kohlbecker
|
// NOTE: style="width:${maxextend}px' is needed for IE8 !!!
|
| 546 |
84849c31
|
Andreas Kohlbecker
|
$max_extend_with = $taxon_profile_image_settings['maxextend'] . 'px';
|
| 547 |
062686a1
|
Andreas Kohlbecker
|
$render_array['taxon_profile_image'] = markup_to_render_array('<div id="taxonProfileImage" style="width:' . $max_extend_with . '">' . $profile_image . '</div>',
|
| 548 |
ca47ea76
|
Andreas Kohlbecker
|
-101);
|
| 549 |
|
|
}
|
| 550 |
0ae57522
|
Patric Plitzner
|
}
|
| 551 |
|
|
|
| 552 |
22383f95
|
Andreas Kohlbecker
|
if($add_synonymy){
|
| 553 |
1cda248c
|
Andreas Kohlbecker
|
$synonymy_a = compose_cdm_taxon_page_synonymy($taxon, true);
|
| 554 |
|
|
$synonymy_a['#weight'] = -102;
|
| 555 |
aec9ca7d
|
Andreas Kohlbecker
|
$synonymy_a['#prefix'] = '<div id="synonymy">';
|
| 556 |
|
|
$synonymy_a['#suffix'] = '</div>';
|
| 557 |
1cda248c
|
Andreas Kohlbecker
|
$render_array['synonymy'] = $synonymy_a;
|
| 558 |
22383f95
|
Andreas Kohlbecker
|
}
|
| 559 |
|
|
|
| 560 |
7ccb6888
|
Andreas Kohlbecker
|
// $pseudo_feature_block_toc_items = array();
|
| 561 |
0ae57522
|
Patric Plitzner
|
|
| 562 |
1b756c5f
|
Andreas Kohlbecker
|
// Render the sections for each real feature
|
| 563 |
|
|
$feature_block_list = make_feature_block_list($merged_tree->root->childNodes, $taxon);
|
| 564 |
|
|
|
| 565 |
bf8aea21
|
Andreas Kohlbecker
|
// >>>>>>>>>>>>>>>>>>> PSEUDO FEATURES >>>>>>>>>>>>>>>>>>>
|
| 566 |
c3a41ddb
|
Andreas Kohlbecker
|
$pseudo_feature_weights = get_array_variable_merged(CDM_PSEUDO_FEATURE_BLOCK_WEIGHTS, CDM_PSEUDO_FEATURE_BLOCK_WEIGHTS_DEFAULT);
|
| 567 |
0ae57522
|
Patric Plitzner
|
|
| 568 |
9b8eb609
|
Andreas Kohlbecker
|
// Bibliography
|
| 569 |
|
|
$bibliography_block = make_bibliography_feature_block();
|
| 570 |
|
|
if($bibliography_block){
|
| 571 |
|
|
$feature_block_list[$pseudo_feature_weights[PSEUDO_FEATURE_BIBLIOGRAPHY]] = $bibliography_block;
|
| 572 |
|
|
cdm_toc_list_add_item('Bibliography', 'bibliography', null, false, $pseudo_feature_weights[PSEUDO_FEATURE_BIBLIOGRAPHY]);
|
| 573 |
1b756c5f
|
Andreas Kohlbecker
|
}
|
| 574 |
|
|
|
| 575 |
bf8aea21
|
Andreas Kohlbecker
|
// Descriptions (aggregated)
|
| 576 |
|
|
$descriptionTypes = array();
|
| 577 |
|
|
$descriptionTypes['descriptionTypes'] = ("AGGREGATED_STRUC_DESC");
|
| 578 |
|
|
$aggregatedDescriptions = cdm_ws_fetch_all(CDM_WS_PORTAL_TAXON . '/' . $taxon->uuid . '/descriptions', $descriptionTypes);
|
| 579 |
|
|
if (isset($aggregatedDescriptions) and !empty($aggregatedDescriptions)) {
|
| 580 |
|
|
// if($feature_block_list) ....TODO
|
| 581 |
|
|
$feature_description = make_pseudo_feature('Descriptions (aggregated)', PSEUDO_FEATURE_AGGREGATION_DESCRIPTIONS);
|
| 582 |
|
|
$description_item = '';
|
| 583 |
|
|
foreach ($aggregatedDescriptions as $description) {
|
| 584 |
92e522db
|
Andreas Kohlbecker
|
$description_item = '<div class="' . html_class_attribute_ref($description) . '">';
|
| 585 |
2527a83c
|
Andreas Kohlbecker
|
$description_item .= render_description_string(get_root_nodes_for_dataset($description));
|
| 586 |
92e522db
|
Andreas Kohlbecker
|
$description_item .= ' ' . icon_link(path_to_description($description->uuid));
|
| 587 |
cd3ea2e8
|
Andreas Kohlbecker
|
$description_item .= '<div class="content-caption">'. statistical_values_explanation() . '</div>';
|
| 588 |
92e522db
|
Andreas Kohlbecker
|
$description_item .= '</div>';
|
| 589 |
bf8aea21
|
Andreas Kohlbecker
|
}
|
| 590 |
|
|
$description_block = feature_block(t('Descriptions (aggregated)'), $feature_description);
|
| 591 |
|
|
$description_block->content = [];
|
| 592 |
|
|
$description_block->content[] = compose_feature_block_wrap_elements([$description_item], $feature_description);
|
| 593 |
e170a53e
|
Patrick Plitzner
|
|
| 594 |
c3a41ddb
|
Andreas Kohlbecker
|
$feature_block_list[$pseudo_feature_weights[PSEUDO_FEATURE_AGGREGATION_DESCRIPTIONS]] = $description_block;
|
| 595 |
089fb6ea
|
Andreas Kohlbecker
|
cdm_toc_list_add_item('Descriptions (aggregated)', 'aggregation_descriptions', null, false, $pseudo_feature_weights[PSEUDO_FEATURE_AGGREGATION_DESCRIPTIONS]);
|
| 596 |
c3a41ddb
|
Andreas Kohlbecker
|
|
| 597 |
0ae57522
|
Patric Plitzner
|
|
| 598 |
bf8aea21
|
Andreas Kohlbecker
|
}
|
| 599 |
9d88232c
|
Patrick Plitzner
|
|
| 600 |
c3a41ddb
|
Andreas Kohlbecker
|
// sort by weight
|
| 601 |
|
|
ksort($feature_block_list);
|
| 602 |
|
|
$render_array['taxon_description_features'] = _block_get_renderable_array($feature_block_list);
|
| 603 |
|
|
|
| 604 |
|
|
/* // update TOC
|
| 605 |
bf8aea21
|
Andreas Kohlbecker
|
if ($pseudo_feature_block_toc_items){
|
| 606 |
1b756c5f
|
Andreas Kohlbecker
|
foreach ($pseudo_feature_block_toc_items as $label=>$fragment){
|
| 607 |
|
|
cdm_toc_list_add_item($label, $fragment);
|
| 608 |
|
|
}
|
| 609 |
0ae57522
|
Patric Plitzner
|
}
|
| 610 |
c3a41ddb
|
Andreas Kohlbecker
|
*/
|
| 611 |
bf8aea21
|
Andreas Kohlbecker
|
// <<<<<<<<<<<<<<<<<<< PSEUDO FEATURES <<<<<<<<<<<<<<<<<<<
|
| 612 |
|
|
|
| 613 |
0ae57522
|
Patric Plitzner
|
// create the table of content
|
| 614 |
|
|
$toc = array(
|
| 615 |
|
|
'#theme' => 'item_list',
|
| 616 |
|
|
'#items' => cdm_toc_list(),
|
| 617 |
|
|
'#title' => t('Content'),
|
| 618 |
|
|
'#weight' => -100, // move to the top
|
| 619 |
|
|
'#suffix' => '</div>',
|
| 620 |
|
|
'#prefix'=> '<div id="page-toc">'
|
| 621 |
|
|
);
|
| 622 |
|
|
$render_array['taxon_description_feature_toc'] = $toc;
|
| 623 |
|
|
|
| 624 |
|
|
return $render_array;
|
| 625 |
bf97c2e8
|
Andreas Kohlbecker
|
}
|
| 626 |
|
|
|
| 627 |
9b8eb609
|
Andreas Kohlbecker
|
/**
|
| 628 |
|
|
* @return object|\stdclass
|
| 629 |
|
|
*/
|
| 630 |
|
|
function make_bibliography_feature_block() {
|
| 631 |
|
|
$bibliography_block = null;
|
| 632 |
|
|
$bibliography_settings = get_bibliography_settings();
|
| 633 |
|
|
if ($bibliography_settings['enabled'] == 1) {
|
| 634 |
|
|
$bibliography_markup = FootnoteManager::renderFootnoteList(PSEUDO_FEATURE_BIBLIOGRAPHY, '');
|
| 635 |
|
|
if ($bibliography_markup) {
|
| 636 |
|
|
$feature_bibliography = make_pseudo_feature('Bibliography', PSEUDO_FEATURE_BIBLIOGRAPHY);
|
| 637 |
|
|
$bibliography_item = markup_to_render_array($bibliography_markup);
|
| 638 |
|
|
$bibliography_block = feature_block(t('Bibliography'), $feature_bibliography);
|
| 639 |
|
|
$bibliography_block->content = [];
|
| 640 |
|
|
$bibliography_block->content[] = compose_feature_block_wrap_elements([$bibliography_item], $feature_bibliography);
|
| 641 |
|
|
}
|
| 642 |
|
|
}
|
| 643 |
|
|
return $bibliography_block;
|
| 644 |
|
|
}
|
| 645 |
|
|
|
| 646 |
a38c0718
|
Patrick Plitzner
|
|
| 647 |
67ce7111
|
Patrick Plitzner
|
/**
|
| 648 |
|
|
* Renders the link which will lead to the specimen detail page
|
| 649 |
55236f7f
|
Andreas Kohlbecker
|
* @param object $specimen
|
| 650 |
|
|
* the cdm specimen entity which will be linked to
|
| 651 |
67ce7111
|
Patrick Plitzner
|
*
|
| 652 |
55236f7f
|
Andreas Kohlbecker
|
* @return string
|
| 653 |
|
|
* the markup for the link
|
| 654 |
67ce7111
|
Patrick Plitzner
|
*/
|
| 655 |
|
|
function render_cdm_specimen_link($specimen) {
|
| 656 |
|
|
$path = path_to_specimen($specimen->uuid);
|
| 657 |
|
|
$attributes['class'][] = html_class_attribute_ref($specimen);
|
| 658 |
ab025781
|
Andreas Kohlbecker
|
return $specimen->titleCache.icon_link($path);
|
| 659 |
67ce7111
|
Patrick Plitzner
|
}
|
| 660 |
|
|
|
| 661 |
57dabcba
|
Andreas Kohlbecker
|
/**
|
| 662 |
|
|
* Returns HTML containing the synonymy for the accepted taxon.
|
| 663 |
|
|
*
|
| 664 |
|
|
* Shows the whole synonymy for the accepted taxon.
|
| 665 |
|
|
* The synonymy list is headed by the complete scientific name
|
| 666 |
|
|
* of the accepted taxon with nomenclatural reference.
|
| 667 |
|
|
*
|
| 668 |
|
|
* @param object $taxon
|
| 669 |
|
|
* @param boolean $add_accepted_taxon
|
| 670 |
|
|
*
|
| 671 |
|
|
* @return array
|
| 672 |
|
|
* Drupal render array for the synonymy
|
| 673 |
|
|
*
|
| 674 |
|
|
* @throws Exception
|
| 675 |
|
|
*
|
| 676 |
|
|
* @ingroup compose
|
| 677 |
|
|
*/
|
| 678 |
|
|
function compose_cdm_taxon_page_synonymy($taxon, $add_accepted_taxon) {
|
| 679 |
|
|
|
| 680 |
|
|
RenderHints::pushToRenderStack('taxon_page_synonymy');
|
| 681 |
|
|
|
| 682 |
|
|
// footnote key for the homotypic group and accepted taxon,
|
| 683 |
|
|
// both should have the same footnote key
|
| 684 |
|
|
RenderHints::setFootnoteListKey(RenderHints::getRenderPath());
|
| 685 |
|
|
|
| 686 |
|
|
$synomymie = cdm_ws_get(CDM_WS_PORTAL_TAXON_SYNONYMY, array($taxon->uuid));
|
| 687 |
|
|
|
| 688 |
|
|
$out = '';
|
| 689 |
|
|
|
| 690 |
|
|
// Render accepted taxon.
|
| 691 |
|
|
//
|
| 692 |
|
|
// foonotes of the accepted taxon will be rendered in the homotypic group section
|
| 693 |
|
|
// even if there are not synonyms in the homotypic group
|
| 694 |
|
|
// homotypic group and accepted taxon should have the same footnote key
|
| 695 |
|
|
$referenceUri = '';
|
| 696 |
|
|
if ($add_accepted_taxon) {
|
| 697 |
|
|
// set new render path for the accepted taxon so
|
| 698 |
|
|
// it can be styled differently via the name render part definitions
|
| 699 |
|
|
RenderHints::pushToRenderStack('accepted_taxon');
|
| 700 |
|
|
$accepted_name = '';
|
| 701 |
|
|
if (variable_get(CDM_SYNONYMY_ACCEPTED_TAXON_SEC_SEPARATE, 0)) {
|
| 702 |
|
|
$label = variable_get(CDM_SYNONYMY_ACCEPTED_TAXON_SEC_SEPARATE_LABEL, CDM_SYNONYMY_ACCEPTED_TAXON_SEC_SEPARATE_LABEL_DEFAULT);
|
| 703 |
|
|
$accepted_name .= '<div class="secReference"><span class="label">' . t($label) . ':</span> ' . $taxon->sec->titleCache . '</div>';
|
| 704 |
|
|
}
|
| 705 |
|
|
if (isset($taxon->name->nomenclaturalReference)) {
|
| 706 |
|
|
$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid));
|
| 707 |
|
|
}
|
| 708 |
|
|
|
| 709 |
|
|
$accepted_name .= '<div class="accepted-name">';
|
| 710 |
|
|
$accepted_name .= render_taxon_or_name($taxon, NULL, $referenceUri);
|
| 711 |
|
|
|
| 712 |
|
|
$name_relations = cdm_name_relationships_for_taxon($taxon);
|
| 713 |
|
|
$name_relationships = compose_name_relationships_inline($name_relations, $taxon->name->uuid, $taxon->uuid);
|
| 714 |
|
|
// Render relationships of accepted name.
|
| 715 |
|
|
if(isset($name_relationships['list']['items'][0])){
|
| 716 |
|
|
$accepted_name .= ' ' . drupal_render($name_relationships);
|
| 717 |
|
|
}
|
| 718 |
39ae8ca4
|
Andreas Kohlbecker
|
$accepted_name .= render_taxon_and_name_footnotes($taxon);
|
| 719 |
57dabcba
|
Andreas Kohlbecker
|
$accepted_name .= '</div>';
|
| 720 |
|
|
RenderHints::popFromRenderStack();
|
| 721 |
|
|
}
|
| 722 |
|
|
|
| 723 |
|
|
// --- Render homotypic synonymy group
|
| 724 |
|
|
if (!empty($accepted_name)) {
|
| 725 |
|
|
$out .= $accepted_name;
|
| 726 |
|
|
}
|
| 727 |
|
|
|
| 728 |
|
|
// Render the homotypicSynonymyGroup including the type information.
|
| 729 |
|
|
$out .= theme(
|
| 730 |
|
|
'cdm_homotypicSynonymyGroup',
|
| 731 |
|
|
array(
|
| 732 |
|
|
'synonymList' => $synomymie->homotypicSynonymsByHomotypicGroup,
|
| 733 |
|
|
'accepted_taxon_name_uuid' => $taxon->name->uuid
|
| 734 |
|
|
)
|
| 735 |
|
|
);
|
| 736 |
|
|
|
| 737 |
|
|
|
| 738 |
|
|
// Render accepted taxon heterotypic synonymy groups.
|
| 739 |
|
|
if ($synomymie->heterotypicSynonymyGroups) {
|
| 740 |
|
|
foreach ($synomymie->heterotypicSynonymyGroups as $homotypicalGroup) {
|
| 741 |
|
|
$out .= theme('cdm_heterotypicSynonymyGroup', array('homotypicalGroup' => $homotypicalGroup));
|
| 742 |
|
|
}
|
| 743 |
|
|
}
|
| 744 |
|
|
// Render taxon relationships.
|
| 745 |
|
|
if (variable_get(CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS, CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS_DEFAULT)) {
|
| 746 |
|
|
$taxonRelationshipsDTO = cdm_ws_get(CDM_WS_PORTAL_TAXON_RELATIONS_DTO, $taxon->uuid);
|
| 747 |
|
|
$out .= cdm_taxonRelationships($taxonRelationshipsDTO, $taxon);
|
| 748 |
|
|
}
|
| 749 |
|
|
|
| 750 |
|
|
RenderHints::popFromRenderStack();
|
| 751 |
|
|
|
| 752 |
|
|
return markup_to_render_array($out);
|
| 753 |
|
|
}
|
| 754 |
|
|
|
| 755 |
61658f41
|
Andreas Kohlbecker
|
/**
|
| 756 |
|
|
* Provides the default configuration for handle_annotations_and_sources() in the
|
| 757 |
|
|
* synonymy.
|
| 758 |
|
|
*
|
| 759 |
|
|
* @return bool[]
|
| 760 |
|
|
*/
|
| 761 |
|
|
function synonymy_annotations_and_source_config() {
|
| 762 |
|
|
static $annotations_and_sources_config = null;
|
| 763 |
|
|
if(!$annotations_and_sources_config){
|
| 764 |
|
|
$bibliography_settings = get_bibliography_settings();
|
| 765 |
|
|
$annotations_and_sources_config = [
|
| 766 |
|
|
'sources_as_content' => FALSE,
|
| 767 |
|
|
'link_to_name_used_in_source' => TRUE,
|
| 768 |
|
|
'link_to_reference' => TRUE,
|
| 769 |
|
|
'add_footnote_keys' => TRUE,
|
| 770 |
|
|
'bibliography_aware' => $bibliography_settings['enabled'] == 1
|
| 771 |
|
|
];
|
| 772 |
|
|
}
|
| 773 |
|
|
return $annotations_and_sources_config;
|
| 774 |
|
|
}
|
| 775 |
|
|
|
| 776 |
57dabcba
|
Andreas Kohlbecker
|
|
| 777 |
f9a3d0f6
|
Andreas Kohlbecker
|
/**
|
| 778 |
|
|
* composes and returns an render array for the experts associated with the given taxon
|
| 779 |
|
|
*
|
| 780 |
8a1b451e
|
Andreas Kohlbecker
|
* @param object taxon
|
| 781 |
f9a3d0f6
|
Andreas Kohlbecker
|
*
|
| 782 |
|
|
* @return array
|
| 783 |
|
|
* A Drupal render array for a table with the experts
|
| 784 |
|
|
*
|
| 785 |
|
|
* @ingroup compose
|
| 786 |
|
|
*/
|
| 787 |
7663cd0b
|
Andreas Kohlbecker
|
function compose_cdm_taxon_page_experts($taxon){
|
| 788 |
|
|
|
| 789 |
|
|
$render_array = array();
|
| 790 |
|
|
if(!isset($taxon->uuid)){
|
| 791 |
|
|
return $render_array;
|
| 792 |
|
|
}
|
| 793 |
|
|
|
| 794 |
|
|
$current_classification_uuid = get_current_classification_uuid();
|
| 795 |
|
|
// TODO use cdm_ws_fetchall below but this failes! needs fix!
|
| 796 |
|
|
$taxon_node_agent_relations = cdm_ws_get(CDM_WS_PORTAL_TAXON_TAXONNODEAGENTRELATIONS,
|
| 797 |
|
|
array(
|
| 798 |
|
|
$taxon->uuid,
|
| 799 |
|
|
$current_classification_uuid
|
| 800 |
|
|
)
|
| 801 |
|
|
);
|
| 802 |
|
|
|
| 803 |
|
|
$header = array(
|
| 804 |
|
|
array('data' => t('Expert')),
|
| 805 |
|
|
array('data' => t('Role'))
|
| 806 |
|
|
);
|
| 807 |
|
|
$rows = array();
|
| 808 |
|
|
|
| 809 |
|
|
|
| 810 |
|
|
foreach($taxon_node_agent_relations->records as $taxon_node_agent_relation){
|
| 811 |
|
|
|
| 812 |
d9763fd3
|
Andreas Kohlbecker
|
|
| 813 |
|
|
$expert_role_id = $taxon_node_agent_relation->agent->uuid . '-' . $taxon_node_agent_relation->type->uuid;
|
| 814 |
|
|
$expert_details_container_id = 'expert_details_' . $expert_role_id;
|
| 815 |
|
|
|
| 816 |
|
|
$agent_label_markup = cdm_dynabox(
|
| 817 |
|
|
'expert_' . $expert_role_id,
|
| 818 |
|
|
$taxon_node_agent_relation->agent->titleCache,
|
| 819 |
|
|
// specifying both ends of the relationship will return only one record in the pager
|
| 820 |
|
|
cdm_compose_url(CDM_WS_PORTAL_AGENT,
|
| 821 |
|
|
array($taxon_node_agent_relation->agent->uuid, 'taxonNodeAgentRelations'),
|
| 822 |
|
|
'taxon_uuid=' . $taxon->uuid . '&relType_uuid=' . $taxon_node_agent_relation->type->uuid),
|
| 823 |
|
|
'cdm_taxon_expert',
|
| 824 |
|
|
'Click for details',
|
| 825 |
|
|
array('div', 'div'),
|
| 826 |
|
|
array(), // attributes
|
| 827 |
cea412e7
|
Andreas Kohlbecker
|
'#' . $expert_details_container_id // $content_element_selector
|
| 828 |
d9763fd3
|
Andreas Kohlbecker
|
);
|
| 829 |
|
|
|
| 830 |
|
|
// Expert and Role
|
| 831 |
|
|
$rows[] = array(
|
| 832 |
|
|
'data' => array(
|
| 833 |
|
|
array(
|
| 834 |
|
|
'data' => $agent_label_markup,
|
| 835 |
|
|
'class' => array(html_class_attribute_ref($taxon_node_agent_relation->agent))
|
| 836 |
7663cd0b
|
Andreas Kohlbecker
|
),
|
| 837 |
d9763fd3
|
Andreas Kohlbecker
|
array(
|
| 838 |
|
|
'data' => $taxon_node_agent_relation->type->representation_L10n,
|
| 839 |
|
|
'class' => array(html_class_attribute_ref($taxon_node_agent_relation->type))
|
| 840 |
|
|
)
|
| 841 |
|
|
)
|
| 842 |
|
|
);
|
| 843 |
|
|
// Agent details
|
| 844 |
|
|
$rows[] = array(
|
| 845 |
|
|
'data' => array(
|
| 846 |
|
|
array(
|
| 847 |
|
|
'data' => '<!-- expert_details_container -->',
|
| 848 |
|
|
'id' => $expert_details_container_id,
|
| 849 |
|
|
'colspan' => 2
|
| 850 |
|
|
)
|
| 851 |
|
|
)
|
| 852 |
7663cd0b
|
Andreas Kohlbecker
|
);
|
| 853 |
d9763fd3
|
Andreas Kohlbecker
|
|
| 854 |
7663cd0b
|
Andreas Kohlbecker
|
}
|
| 855 |
|
|
|
| 856 |
|
|
|
| 857 |
|
|
$render_array['experts_table'] = array(
|
| 858 |
|
|
'#theme' => 'table',
|
| 859 |
|
|
'#header' => $header,
|
| 860 |
|
|
'#rows' => $rows,
|
| 861 |
|
|
);
|
| 862 |
|
|
|
| 863 |
|
|
|
| 864 |
|
|
return $render_array;
|
| 865 |
|
|
}
|
| 866 |
|
|
|
| 867 |
bf97c2e8
|
Andreas Kohlbecker
|
|
| 868 |
3f259ca3
|
Andreas Kohlbecker
|
/**
|
| 869 |
7663cd0b
|
Andreas Kohlbecker
|
* Manages the tabs to be hidden in the taxon page.
|
| 870 |
3f259ca3
|
Andreas Kohlbecker
|
*
|
| 871 |
|
|
* The tabs are identified by their last menu link path element:
|
| 872 |
|
|
* - description
|
| 873 |
|
|
* - synonymy
|
| 874 |
|
|
* - images
|
| 875 |
|
|
* - specimens
|
| 876 |
|
|
* - key
|
| 877 |
|
|
*
|
| 878 |
|
|
* Internally the tabs are stored in a static variable which is
|
| 879 |
|
|
* managed by drupal_static().
|
| 880 |
|
|
*
|
| 881 |
|
|
* @param string $add_tab
|
| 882 |
7663cd0b
|
Andreas Kohlbecker
|
* Optional parameter. The given string will be added to the array of tabs
|
| 883 |
3f259ca3
|
Andreas Kohlbecker
|
*
|
| 884 |
|
|
* @return
|
| 885 |
|
|
* The array of tabs
|
| 886 |
|
|
*/
|
| 887 |
48a6d7e8
|
Andreas Kohlbecker
|
function taxon_page_tabs_hidden_add($add_tab = NULL) {
|
| 888 |
|
|
$tabs = &drupal_static('taxon_page_tabs_hidden');
|
| 889 |
3f259ca3
|
Andreas Kohlbecker
|
|
| 890 |
0ae57522
|
Patric Plitzner
|
if(!isset($tabs)){
|
| 891 |
|
|
$tabs = array();
|
| 892 |
|
|
}
|
| 893 |
3f259ca3
|
Andreas Kohlbecker
|
|
| 894 |
0ae57522
|
Patric Plitzner
|
if (isset($add_tab) && !array_key_exists($add_tab, $tabs)) {
|
| 895 |
|
|
$tabs[] = $add_tab;
|
| 896 |
|
|
}
|
| 897 |
3f259ca3
|
Andreas Kohlbecker
|
|
| 898 |
0ae57522
|
Patric Plitzner
|
return $tabs;
|
| 899 |
3f259ca3
|
Andreas Kohlbecker
|
}
|
| 900 |
|
|
|
| 901 |
48a6d7e8
|
Andreas Kohlbecker
|
/**
|
| 902 |
|
|
* Manages the tabs to be hidden in the taxon page.
|
| 903 |
|
|
*
|
| 904 |
|
|
* The tabs names are identified by their last menu link path element:
|
| 905 |
|
|
* - description
|
| 906 |
|
|
* - synonymy
|
| 907 |
|
|
* - images
|
| 908 |
|
|
* - specimens
|
| 909 |
|
|
* - key
|
| 910 |
|
|
*
|
| 911 |
|
|
* Internally the tabs are stored in a static variable which is
|
| 912 |
|
|
* managed by drupal_static().
|
| 913 |
|
|
*
|
| 914 |
|
|
* @param string $tabname
|
| 915 |
|
|
* The name of the tab to check
|
| 916 |
|
|
*
|
| 917 |
|
|
* @return boolean
|
| 918 |
|
|
* True if the tab or section is to be hidden
|
| 919 |
|
|
*/
|
| 920 |
|
|
function taxon_page_tabs_hidden_check($tabname) {
|
| 921 |
|
|
|
| 922 |
|
|
$tabs = &drupal_static('taxon_page_tabs_hidden');
|
| 923 |
|
|
|
| 924 |
|
|
if(!isset($tabs)){
|
| 925 |
|
|
$tabs = array();
|
| 926 |
|
|
}
|
| 927 |
|
|
|
| 928 |
|
|
return array_search($tabname, $tabs) !== FALSE;
|
| 929 |
|
|
}
|
| 930 |
|
|
|
| 931 |
3f259ca3
|
Andreas Kohlbecker
|
/**
|
| 932 |
|
|
* Implements the hook_preprocess_HOOK() for theme_menu_local_tasks()
|
| 933 |
|
|
*
|
| 934 |
48a6d7e8
|
Andreas Kohlbecker
|
* - Removes the tabs to be hidden, @see taxon_page_tabs_hidden_add()
|
| 935 |
9438ad3a
|
Andreas Kohlbecker
|
* - Renames tabs according to the settings // TODO (this will replace the theme_cdm_taxonpage_tab() function !!!)
|
| 936 |
3f259ca3
|
Andreas Kohlbecker
|
*
|
| 937 |
|
|
* @param array $variables
|
| 938 |
|
|
* The variables array
|
| 939 |
|
|
*/
|
| 940 |
|
|
function cdm_dataportal_preprocess_menu_local_tasks(&$variables) {
|
| 941 |
|
|
|
| 942 |
48a6d7e8
|
Andreas Kohlbecker
|
$hidden_tabs = taxon_page_tabs_hidden_add();
|
| 943 |
3f259ca3
|
Andreas Kohlbecker
|
|
| 944 |
868be375
|
Katja Luther
|
if (!variable_get(CDM_SEARCH_BLAST_ENABLED)) {
|
| 945 |
6f6f79f6
|
Katja Luther
|
if (is_array($variables['primary'])) {
|
| 946 |
|
|
foreach ($variables['primary'] as $key => &$element) {
|
| 947 |
|
|
if ($element['#link']['path'] == 'cdm_dataportal/search/blast') {
|
| 948 |
|
|
// remove the tab
|
| 949 |
|
|
unset($variables['primary'][$key]);
|
| 950 |
|
|
}
|
| 951 |
868be375
|
Katja Luther
|
|
| 952 |
6f6f79f6
|
Katja Luther
|
}
|
| 953 |
868be375
|
Katja Luther
|
}
|
| 954 |
|
|
}
|
| 955 |
0ae57522
|
Patric Plitzner
|
if (is_array($variables['primary'])) {
|
| 956 |
|
|
foreach ($variables['primary'] as $key => &$element) {
|
| 957 |
6f1a217c
|
Andreas Kohlbecker
|
|
| 958 |
0ae57522
|
Patric Plitzner
|
// 1. Remove the tabs to be hidden
|
| 959 |
|
|
foreach ($hidden_tabs as $tab) {
|
| 960 |
|
|
if ($element['#link']['path'] == 'cdm_dataportal/taxon/%/' . $tab) {
|
| 961 |
|
|
// remove the tab
|
| 962 |
|
|
unset($variables['primary'][$key]);
|
| 963 |
9438ad3a
|
Andreas Kohlbecker
|
}
|
| 964 |
0ae57522
|
Patric Plitzner
|
}
|
| 965 |
3f259ca3
|
Andreas Kohlbecker
|
}
|
| 966 |
0ae57522
|
Patric Plitzner
|
}
|
| 967 |
6f1a217c
|
Andreas Kohlbecker
|
}
|
| 968 |
|
|
|
| 969 |
|
|
|
| 970 |
|
|
|
| 971 |
|
|
/**
|
| 972 |
|
|
* Implements the hook_preprocess_HOOK() for theme_menu_local_task()
|
| 973 |
|
|
*
|
| 974 |
|
|
*
|
| 975 |
|
|
* @param array $variables
|
| 976 |
|
|
* An associative array containing:
|
| 977 |
|
|
* - element: A render element containing:
|
| 978 |
|
|
* #link: A menu link array with 'title', 'href', and 'localized_options' keys.
|
| 979 |
|
|
* #active: A boolean indicating whether the local task is active.
|
| 980 |
|
|
*
|
| 981 |
|
|
*/
|
| 982 |
|
|
function cdm_dataportal_preprocess_menu_local_task(&$variables) {
|
| 983 |
|
|
|
| 984 |
0ae57522
|
Patric Plitzner
|
$link = $variables['element']['#link'];
|
| 985 |
|
|
if (preg_match('/cdm_dataportal\/.*\/refresh$/', $link['href'])) {
|
| 986 |
|
|
$link['title'] = '<img class="refresh" src="' . base_path() . drupal_get_path('module', 'cdm_dataportal') . '/images/view-refresh.png' . '" alt="' . check_plain($link['title']) . '" title="' . check_plain($link['title']) . '"/>';
|
| 987 |
|
|
$link['localized_options']['html'] = TRUE;
|
| 988 |
6f1a217c
|
Andreas Kohlbecker
|
|
| 989 |
0ae57522
|
Patric Plitzner
|
$variables['element']['#link'] = $link;
|
| 990 |
|
|
}
|
| 991 |
f19f47fa
|
Andreas Kohlbecker
|
}
|
| 992 |
f9a3d0f6
|
Andreas Kohlbecker
|
|
| 993 |
|
|
/* =================== block composition ===================== */
|
| 994 |
|
|
|
| 995 |
|
|
/**
|
| 996 |
23ad16a1
|
Andreas Kohlbecker
|
* Composes and returns an render array for the classification breadcrumbs of the given taxon.
|
| 997 |
f9a3d0f6
|
Andreas Kohlbecker
|
*
|
| 998 |
|
|
* @param taxon
|
| 999 |
|
|
*
|
| 1000 |
|
|
* @return array
|
| 1001 |
|
|
* A Drupal render array for a table with the experts
|
| 1002 |
|
|
*
|
| 1003 |
|
|
* @ingroup compose
|
| 1004 |
|
|
*/
|
| 1005 |
|
|
function compose_classification_breadcrumbs($taxon_uuid) {
|
| 1006 |
|
|
|
| 1007 |
b0adfd32
|
Andreas Kohlbecker
|
_add_js_taxonomic_children('#classification-breadcrumbs .taxonomic-children-button');
|
| 1008 |
d0d23caa
|
Andreas Kohlbecker
|
|
| 1009 |
f9a3d0f6
|
Andreas Kohlbecker
|
$render_array = array();
|
| 1010 |
|
|
|
| 1011 |
|
|
$render_array['#theme'] = 'item_list';
|
| 1012 |
|
|
$render_array['#type'] = 'ul';
|
| 1013 |
|
|
$render_array['#attributes'] = array(
|
| 1014 |
|
|
'id' => 'classification-breadcrumbs',
|
| 1015 |
|
|
'class' => 'breadcrumbs inline',
|
| 1016 |
|
|
);
|
| 1017 |
|
|
|
| 1018 |
|
|
$items = array();
|
| 1019 |
|
|
|
| 1020 |
38da4e54
|
Andreas Kohlbecker
|
$parent_taxon_nodes = null;
|
| 1021 |
|
|
if($taxon_uuid){
|
| 1022 |
|
|
$parent_taxon_nodes = cdm_ws_taxonomy_pathFromRoot($taxon_uuid);
|
| 1023 |
|
|
}
|
| 1024 |
f9a3d0f6
|
Andreas Kohlbecker
|
|
| 1025 |
38da4e54
|
Andreas Kohlbecker
|
$classifications = cdm_ws_fetch_all(CDM_WS_PORTAL_TAXONOMY);
|
| 1026 |
|
|
// find current classification in list
|
| 1027 |
|
|
$classification = null;
|
| 1028 |
|
|
$current_classification_uuid = get_current_classification_uuid();
|
| 1029 |
|
|
foreach ($classifications as $classification){
|
| 1030 |
|
|
if($classification->uuid == $current_classification_uuid){
|
| 1031 |
|
|
break;
|
| 1032 |
b0adfd32
|
Andreas Kohlbecker
|
}
|
| 1033 |
38da4e54
|
Andreas Kohlbecker
|
}
|
| 1034 |
b0adfd32
|
Andreas Kohlbecker
|
|
| 1035 |
38da4e54
|
Andreas Kohlbecker
|
$node_name = '';
|
| 1036 |
|
|
if(count($classifications) > 1 ){
|
| 1037 |
|
|
// need to add the current classification as first label
|
| 1038 |
0af3ce28
|
Andreas Kohlbecker
|
|
| 1039 |
|
|
$label = $classification->titleCache;
|
| 1040 |
|
|
if(strlen($label) > 20){
|
| 1041 |
|
|
$label = substr($label, 0, strpos($label, ' ', 15)) . '...';
|
| 1042 |
|
|
}
|
| 1043 |
|
|
$node_name = font_awesome_icon_markup('fa-th-list') . ' ' . l($label, '#', array(
|
| 1044 |
|
|
'attributes' => array(
|
| 1045 |
|
|
'class' => 'taxonomic-children-button classification-chooser',
|
| 1046 |
|
|
'data-destination-uri' => drupal_get_destination(),
|
| 1047 |
|
|
'data-cdm-align-with' => array('prev')
|
| 1048 |
|
|
),
|
| 1049 |
|
|
'html' => true
|
| 1050 |
|
|
));
|
| 1051 |
f9a3d0f6
|
Andreas Kohlbecker
|
}
|
| 1052 |
b0adfd32
|
Andreas Kohlbecker
|
|
| 1053 |
38da4e54
|
Andreas Kohlbecker
|
$rank_limit_uuid = variable_get(TAXONTREE_RANKLIMIT, TAXONTREE_RANKLIMIT_DEFAULT);
|
| 1054 |
0af3ce28
|
Andreas Kohlbecker
|
|
| 1055 |
|
|
$rank_separator = '<span> '
|
| 1056 |
38da4e54
|
Andreas Kohlbecker
|
. font_awesome_icon_markup('fa-chevron-right')
|
| 1057 |
|
|
. ' </span>';
|
| 1058 |
0af3ce28
|
Andreas Kohlbecker
|
$more_children_icon = font_awesome_icon_markup('fa-sitemap fa-rotate-270');
|
| 1059 |
69fb3dbb
|
Andreas Kohlbecker
|
$more_children_label = '...';
|
| 1060 |
38da4e54
|
Andreas Kohlbecker
|
|
| 1061 |
0af3ce28
|
Andreas Kohlbecker
|
$items[] = $node_name;
|
| 1062 |
38da4e54
|
Andreas Kohlbecker
|
|
| 1063 |
0af3ce28
|
Andreas Kohlbecker
|
$more_children_for = null;
|
| 1064 |
e3235962
|
Andreas Kohlbecker
|
if($parent_taxon_nodes){
|
| 1065 |
0af3ce28
|
Andreas Kohlbecker
|
foreach ($parent_taxon_nodes as $node) {
|
| 1066 |
38da4e54
|
Andreas Kohlbecker
|
|
| 1067 |
|
|
$is_first_item = count($items) == 0;
|
| 1068 |
0af3ce28
|
Andreas Kohlbecker
|
$is_last_item = count($items) == count($parent_taxon_nodes);
|
| 1069 |
38da4e54
|
Andreas Kohlbecker
|
$node_name = cdm_dataportal_shortname_of($node);
|
| 1070 |
|
|
$path = path_to_taxon($node->taxonUuid);
|
| 1071 |
|
|
|
| 1072 |
0af3ce28
|
Andreas Kohlbecker
|
if($node->taxonomicChildrenCount > 0) {
|
| 1073 |
|
|
$more_children_for = $node->taxonUuid;
|
| 1074 |
|
|
} else {
|
| 1075 |
|
|
$more_children_for = null;
|
| 1076 |
38da4e54
|
Andreas Kohlbecker
|
}
|
| 1077 |
|
|
|
| 1078 |
0af3ce28
|
Andreas Kohlbecker
|
// 'fa-sitemap'
|
| 1079 |
|
|
|
| 1080 |
38da4e54
|
Andreas Kohlbecker
|
$items[] =
|
| 1081 |
0af3ce28
|
Andreas Kohlbecker
|
($is_first_item ? '' : ' ')
|
| 1082 |
|
|
. $rank_separator
|
| 1083 |
|
|
. l(
|
| 1084 |
4b3be949
|
Andreas Kohlbecker
|
'<span class="' . html_class_attribute_ref($node) . '">' . $node_name . '</span>',
|
| 1085 |
0af3ce28
|
Andreas Kohlbecker
|
$path,
|
| 1086 |
|
|
array(
|
| 1087 |
|
|
'attributes' => array(
|
| 1088 |
|
|
'class' => array('taxonomic-children-button'),
|
| 1089 |
|
|
'data-cdm-taxon-uuid' => array($node->taxonUuid),
|
| 1090 |
|
|
'data-cdm-classification-mode' => array('siblings'),
|
| 1091 |
|
|
'data-cdm-align-with' => array('prev')
|
| 1092 |
4b3be949
|
Andreas Kohlbecker
|
),
|
| 1093 |
|
|
'html' => true
|
| 1094 |
0af3ce28
|
Andreas Kohlbecker
|
)
|
| 1095 |
|
|
);
|
| 1096 |
|
|
}
|
| 1097 |
38da4e54
|
Andreas Kohlbecker
|
}
|
| 1098 |
0af3ce28
|
Andreas Kohlbecker
|
|
| 1099 |
|
|
// add more button to the end
|
| 1100 |
|
|
if(!$parent_taxon_nodes) {
|
| 1101 |
|
|
// not taxon focused yet, adding button to make the root nodes available
|
| 1102 |
69fb3dbb
|
Andreas Kohlbecker
|
$items[] = '<span>'
|
| 1103 |
|
|
. $more_children_icon . ' ' .
|
| 1104 |
|
|
'<span class="taxonomic-children-button" data-classification-uuid="' . $current_classification_uuid
|
| 1105 |
53c705d4
|
Andreas Kohlbecker
|
. '" data-rank-limit-uuid="' . $rank_limit_uuid . '" data-cdm-align-with="prev"> ' . $more_children_label . '<span>'
|
| 1106 |
69fb3dbb
|
Andreas Kohlbecker
|
. '</span>';
|
| 1107 |
0af3ce28
|
Andreas Kohlbecker
|
} else if($more_children_for){
|
| 1108 |
|
|
// last parent item has child taxon nodes
|
| 1109 |
69fb3dbb
|
Andreas Kohlbecker
|
$items[] = ' <span>'
|
| 1110 |
|
|
. $more_children_icon . ' ' .
|
| 1111 |
|
|
'<span class="taxonomic-children-button" data-cdm-taxon-uuid="' .$more_children_for
|
| 1112 |
53c705d4
|
Andreas Kohlbecker
|
. '" data-cdm-classification-mode="children" data-cdm-align-with="prev"> ' . $more_children_label . '</span>'
|
| 1113 |
69fb3dbb
|
Andreas Kohlbecker
|
. '</span>';
|
| 1114 |
0af3ce28
|
Andreas Kohlbecker
|
|
| 1115 |
e3235962
|
Andreas Kohlbecker
|
}
|
| 1116 |
b0adfd32
|
Andreas Kohlbecker
|
|
| 1117 |
30845bda
|
Andreas Kohlbecker
|
$render_array['#items'] = $items;
|
| 1118 |
0af3ce28
|
Andreas Kohlbecker
|
|
| 1119 |
30845bda
|
Andreas Kohlbecker
|
return $render_array;
|
| 1120 |
|
|
}
|
| 1121 |
0af3ce28
|
Andreas Kohlbecker
|
|
| 1122 |
69fb3dbb
|
Andreas Kohlbecker
|
|
| 1123 |
30845bda
|
Andreas Kohlbecker
|
/**
|
| 1124 |
|
|
* @param $specimen_uuid
|
| 1125 |
|
|
* @return array
|
| 1126 |
|
|
* The drupal render array for the page
|
| 1127 |
|
|
*
|
| 1128 |
|
|
* @ingroup compose
|
| 1129 |
|
|
*/
|
| 1130 |
e89c1115
|
Katja Luther
|
function compose_cdm_specimen_page($specimen_uuid)
|
| 1131 |
30845bda
|
Andreas Kohlbecker
|
{
|
| 1132 |
|
|
drupal_set_title("Specimen Details");
|
| 1133 |
|
|
RenderHints::pushToRenderStack('specimen_page');
|
| 1134 |
f9a3d0f6
|
Andreas Kohlbecker
|
|
| 1135 |
78a42a9b
|
Katja Luther
|
$specimen_table = array(
|
| 1136 |
|
|
'#theme' => 'table',
|
| 1137 |
|
|
'#weight' => 2,
|
| 1138 |
2527a83c
|
Andreas Kohlbecker
|
// prefix attributes and rows with '#' to let it pass to the theme function,
|
| 1139 |
78a42a9b
|
Katja Luther
|
// otherwise it is handled as child render array
|
| 1140 |
489f7610
|
Katja Luther
|
|
| 1141 |
|
|
'#attributes' => array('class' => 'specimens'),
|
| 1142 |
78a42a9b
|
Katja Luther
|
'#rows' => array(),
|
| 1143 |
93fb962c
|
Katja Luther
|
'#prefix' => '<div id="specimens">',
|
| 1144 |
|
|
'#suffix' => '</div>',
|
| 1145 |
|
|
|
| 1146 |
489f7610
|
Katja Luther
|
|
| 1147 |
78a42a9b
|
Katja Luther
|
);
|
| 1148 |
|
|
$specimen = compose_cdm_specimen_or_observation($specimen_uuid, true);
|
| 1149 |
44f44469
|
Andreas Kohlbecker
|
/*
|
| 1150 |
961319fe
|
Andreas Kohlbecker
|
$render_array = array(
|
| 1151 |
78a42a9b
|
Katja Luther
|
'#theme' => 'item_list',
|
| 1152 |
|
|
'#items' => array($specimen),
|
| 1153 |
|
|
'#type' => 'ul');
|
| 1154 |
961319fe
|
Andreas Kohlbecker
|
$output = drupal_render($render_array);
|
| 1155 |
44f44469
|
Andreas Kohlbecker
|
*/
|
| 1156 |
78a42a9b
|
Katja Luther
|
$specimen_table['#rows'][] = array(
|
| 1157 |
|
|
// An array of table rows. Every row is an array of cells, or an associative array
|
| 1158 |
961319fe
|
Andreas Kohlbecker
|
'data' => $specimen,
|
| 1159 |
78a42a9b
|
Katja Luther
|
'class' => array(
|
| 1160 |
|
|
'descriptionElement',
|
| 1161 |
|
|
'descriptionElement_IndividualsAssociation'
|
| 1162 |
|
|
),
|
| 1163 |
|
|
);
|
| 1164 |
e89c1115
|
Katja Luther
|
|
| 1165 |
|
|
|
| 1166 |
78a42a9b
|
Katja Luther
|
// $detail_html = compose_cdm_specimen_or_observation($specimen_uuid, true);
|
| 1167 |
93fb962c
|
Katja Luther
|
// $render_array['markup'] = array(
|
| 1168 |
|
|
// '#prefix' => '<div id="specimens" class="page">',
|
| 1169 |
|
|
// 'content' => $specimen_table,
|
| 1170 |
|
|
// '#suffix' => '</div>',
|
| 1171 |
|
|
// );
|
| 1172 |
2527a83c
|
Andreas Kohlbecker
|
$render_array['specimen_table'] = $specimen_table;
|
| 1173 |
e89c1115
|
Katja Luther
|
|
| 1174 |
30845bda
|
Andreas Kohlbecker
|
RenderHints::popFromRenderStack();
|
| 1175 |
961319fe
|
Andreas Kohlbecker
|
return $specimen; // $render_array;
|
| 1176 |
30845bda
|
Andreas Kohlbecker
|
}
|
| 1177 |
f9a3d0f6
|
Andreas Kohlbecker
|
|
| 1178 |
30845bda
|
Andreas Kohlbecker
|
/**
|
| 1179 |
|
|
* @param $named_area_uuid
|
| 1180 |
|
|
* @return array
|
| 1181 |
|
|
* The drupal render array for the page
|
| 1182 |
|
|
*
|
| 1183 |
|
|
* @ingroup compose
|
| 1184 |
|
|
*/
|
| 1185 |
|
|
function compose_cdm_named_area_page($named_area_uuid)
|
| 1186 |
|
|
{
|
| 1187 |
|
|
|
| 1188 |
|
|
$named_area = cdm_ws_get(CDM_WS_PORTAL_TERM, array($named_area_uuid));
|
| 1189 |
|
|
|
| 1190 |
|
|
$render_array = array();
|
| 1191 |
|
|
RenderHints::pushToRenderStack('named_area_page');
|
| 1192 |
|
|
|
| 1193 |
|
|
$groups = array();
|
| 1194 |
|
|
@_description_list_group_add($groups, t('Name') . ':', $named_area->representation_L10n);
|
| 1195 |
|
|
@_description_list_group_add($groups, t('IdInVocabulary') . ':', $named_area->idInVocabulary);
|
| 1196 |
|
|
if(isset($named_area->level)) {
|
| 1197 |
|
|
@_description_list_group_add($groups, t('Level') . ':', $named_area->level->representation_L10n);
|
| 1198 |
|
|
}
|
| 1199 |
|
|
|
| 1200 |
|
|
$name_area_details_elements = array(
|
| 1201 |
|
|
// '#title' => $title,
|
| 1202 |
|
|
'#theme' => 'description_list',
|
| 1203 |
|
|
'#groups' => $groups,
|
| 1204 |
|
|
'#attributes' => array('class' => html_class_attribute_ref($named_area)),
|
| 1205 |
|
|
);
|
| 1206 |
|
|
|
| 1207 |
|
|
$render_array[] = $name_area_details_elements;
|
| 1208 |
|
|
|
| 1209 |
|
|
RenderHints::popFromRenderStack();
|
| 1210 |
|
|
return $render_array;
|
| 1211 |
f9a3d0f6
|
Andreas Kohlbecker
|
}
|
| 1212 |
4feeabc7
|
Andreas Kohlbecker
|
|
| 1213 |
57dabcba
|
Andreas Kohlbecker
|
|
| 1214 |
|
|
/**
|
| 1215 |
|
|
* Returns a drupal render array for a single reference page.
|
| 1216 |
|
|
*
|
| 1217 |
|
|
* Composes a page with all data on a single reference.
|
| 1218 |
|
|
*
|
| 1219 |
|
|
* @param string $uuid
|
| 1220 |
|
|
* An uuid for a cdm reference.
|
| 1221 |
|
|
*
|
| 1222 |
|
|
* @return array
|
| 1223 |
|
|
* A drupal render array
|
| 1224 |
|
|
*
|
| 1225 |
|
|
* @throws Exception
|
| 1226 |
|
|
*
|
| 1227 |
|
|
* @ingroup compose
|
| 1228 |
|
|
*/
|
| 1229 |
|
|
function compose_cdm_reference_page($uuid) {
|
| 1230 |
|
|
|
| 1231 |
|
|
$pathelement = "reference_page";
|
| 1232 |
|
|
RenderHints::pushToRenderStack($pathelement);
|
| 1233 |
|
|
$reference = cdm_ws_get(CDM_WS_REFERENCE, $uuid);
|
| 1234 |
4d9660ef
|
Andreas Kohlbecker
|
if (!$reference) {
|
| 1235 |
|
|
drupal_set_title(t('Reference does not exist'), PASS_THROUGH);
|
| 1236 |
de017852
|
Andreas Kohlbecker
|
return "";
|
| 1237 |
4d9660ef
|
Andreas Kohlbecker
|
}
|
| 1238 |
57dabcba
|
Andreas Kohlbecker
|
if (isset($reference->titleCache)) {
|
| 1239 |
|
|
drupal_set_title($reference->titleCache, PASS_THROUGH);
|
| 1240 |
|
|
}
|
| 1241 |
|
|
|
| 1242 |
|
|
$field_order = array(
|
| 1243 |
|
|
"title",
|
| 1244 |
|
|
"abbrevTitle",
|
| 1245 |
|
|
// "titleCache" abbrevTitleCache
|
| 1246 |
|
|
// "citation",
|
| 1247 |
|
|
"authorship",
|
| 1248 |
|
|
"editor",
|
| 1249 |
|
|
"publisher",
|
| 1250 |
|
|
"placePublished",
|
| 1251 |
|
|
"datePublished",
|
| 1252 |
|
|
"year",
|
| 1253 |
|
|
"edition",// Class Book.
|
| 1254 |
|
|
"volume",// Class Article.
|
| 1255 |
|
|
"seriesPart",
|
| 1256 |
|
|
"inReference",
|
| 1257 |
|
|
"nomRefBase", // Class BookSection, Book, Article.
|
| 1258 |
|
|
"pages",// Class Article.
|
| 1259 |
|
|
"series",// Class Article, PrintSeries.
|
| 1260 |
|
|
"school",// Class Thesis.
|
| 1261 |
|
|
"institution",// Class Report.
|
| 1262 |
|
|
"organization",// Class Proceedings.
|
| 1263 |
|
|
"nextVersion",
|
| 1264 |
|
|
"previousVersion",
|
| 1265 |
|
|
"isbn",// Class Book.
|
| 1266 |
|
|
"issn",// Class Journal.
|
| 1267 |
|
|
"doi",
|
| 1268 |
|
|
"uri"
|
| 1269 |
|
|
);
|
| 1270 |
|
|
|
| 1271 |
|
|
$table_rows = array();
|
| 1272 |
|
|
|
| 1273 |
|
|
if (!isset($reference->authorship)) {
|
| 1274 |
|
|
$authorship = cdm_ws_get(CDM_WS_REFERENCE_AUTHORTEAM, $reference->uuid);
|
| 1275 |
|
|
$reference->authorship = isset($authorship->titleCache) ? $authorship->titleCache : '';
|
| 1276 |
|
|
}
|
| 1277 |
|
|
|
| 1278 |
|
|
if (!isset($reference->inReference)) {
|
| 1279 |
|
|
$reference->inReference = cdm_ws_get(CDM_WS_REFERENCE, array(
|
| 1280 |
|
|
$reference->uuid,
|
| 1281 |
|
|
"inReference",
|
| 1282 |
|
|
));
|
| 1283 |
|
|
}
|
| 1284 |
|
|
|
| 1285 |
|
|
foreach ($field_order as $fieldname) {
|
| 1286 |
|
|
|
| 1287 |
|
|
if (isset($reference->$fieldname)) {
|
| 1288 |
|
|
|
| 1289 |
|
|
if ($fieldname == "datePublished") {
|
| 1290 |
|
|
$period = $reference->$fieldname;
|
| 1291 |
|
|
$datePublished = timePeriodToString($period);
|
| 1292 |
|
|
if (isset($datePublished) && $datePublished != '') {
|
| 1293 |
|
|
$table_rows[] = array(
|
| 1294 |
|
|
t("Date published"),
|
| 1295 |
|
|
$datePublished,
|
| 1296 |
|
|
);
|
| 1297 |
|
|
}
|
| 1298 |
|
|
}
|
| 1299 |
|
|
elseif ($fieldname == "doi" && is_object($reference->doi)) {
|
| 1300 |
|
|
$table_rows[] = array(
|
| 1301 |
|
|
t('@fieldname', array('@fieldname' => ucfirst(strtolower($fieldname)))),
|
| 1302 |
|
|
cdm_doi($reference->doi, false)
|
| 1303 |
|
|
);
|
| 1304 |
|
|
}
|
| 1305 |
|
|
elseif ($fieldname == "uri" && isset($reference->uri) && $reference->uri) {
|
| 1306 |
|
|
$table_rows[] = array(
|
| 1307 |
|
|
t('@fieldname', array('@fieldname' => ucfirst(strtolower($fieldname)))),
|
| 1308 |
|
|
cdm_external_uri($reference->uri, false)
|
| 1309 |
|
|
);
|
| 1310 |
|
|
}
|
| 1311 |
|
|
elseif (is_object($reference->$fieldname)) {
|
| 1312 |
|
|
if ($fieldname == "authorship") {
|
| 1313 |
|
|
$dump = $reference->$fieldname;
|
| 1314 |
|
|
$teammembers = "teamMembers";
|
| 1315 |
|
|
$team = $dump->$teammembers;
|
| 1316 |
|
|
$nameArray = array();
|
| 1317 |
|
|
|
| 1318 |
|
|
foreach ($team as $member) {
|
| 1319 |
|
|
if (strlen($member->lastname) > 0) {
|
| 1320 |
|
|
$nname = $member->lastname;
|
| 1321 |
|
|
$name = $nname;
|
| 1322 |
|
|
if (strlen($member->firstname) > 0) {
|
| 1323 |
|
|
$vname = $member->firstname;
|
| 1324 |
|
|
$name = $vname . " " . $nname;
|
| 1325 |
|
|
}
|
| 1326 |
|
|
$nameArray[] = $name;
|
| 1327 |
|
|
}
|
| 1328 |
|
|
else {
|
| 1329 |
|
|
if (strlen($member->titleCache) > 0) {
|
| 1330 |
|
|
$nameArray[] = $member->titleCache;
|
| 1331 |
|
|
}
|
| 1332 |
|
|
}
|
| 1333 |
|
|
}
|
| 1334 |
|
|
$value = join($nameArray, ", ");
|
| 1335 |
|
|
}
|
| 1336 |
|
|
elseif ($fieldname == "inReference") {
|
| 1337 |
|
|
$type = $reference->$fieldname->type;
|
| 1338 |
|
|
$value = l($reference->$fieldname->titleCache, path_to_reference($reference->$fieldname->uuid));
|
| 1339 |
|
|
switch ($type) {
|
| 1340 |
|
|
case "Book":
|
| 1341 |
|
|
$fieldname = "in book";
|
| 1342 |
|
|
break;
|
| 1343 |
|
|
case "Journal":
|
| 1344 |
|
|
$fieldname = "in journal";
|
| 1345 |
|
|
break;
|
| 1346 |
|
|
case "Proceedings":
|
| 1347 |
|
|
$fieldname = "in proceedings";
|
| 1348 |
|
|
break;
|
| 1349 |
|
|
}
|
| 1350 |
|
|
}
|
| 1351 |
|
|
else {
|
| 1352 |
|
|
$value = $reference->$fieldname->titleCache;
|
| 1353 |
|
|
}
|
| 1354 |
|
|
|
| 1355 |
|
|
|
| 1356 |
|
|
if (isset($value) && $value != '') {
|
| 1357 |
|
|
$table_rows[] = array(
|
| 1358 |
|
|
t('@fieldname', array('@fieldname' => ucfirst(strtolower($fieldname)))),
|
| 1359 |
|
|
$value,
|
| 1360 |
|
|
);
|
| 1361 |
|
|
}
|
| 1362 |
|
|
|
| 1363 |
|
|
}
|
| 1364 |
|
|
else {
|
| 1365 |
|
|
if (isset($reference->$fieldname) && $reference->$fieldname != '') {
|
| 1366 |
|
|
$table_rows[] = array(
|
| 1367 |
|
|
t('@fieldname', array('@fieldname' => ucfirst(strtolower($fieldname)))),
|
| 1368 |
|
|
$reference->$fieldname,
|
| 1369 |
|
|
);
|
| 1370 |
|
|
}
|
| 1371 |
|
|
}
|
| 1372 |
|
|
}
|
| 1373 |
|
|
}
|
| 1374 |
|
|
|
| 1375 |
|
|
$out = theme_table(array(
|
| 1376 |
|
|
'header' => array(),
|
| 1377 |
|
|
'rows' => $table_rows,
|
| 1378 |
|
|
'attributes' => array(
|
| 1379 |
|
|
'class' => html_class_attribute_ref($reference)
|
| 1380 |
|
|
),
|
| 1381 |
|
|
'caption' => NULL,
|
| 1382 |
|
|
'colgroups' => NULL,
|
| 1383 |
|
|
'sticky' => NULL,
|
| 1384 |
|
|
'empty' => NULL,
|
| 1385 |
|
|
));
|
| 1386 |
|
|
|
| 1387 |
|
|
if(isset($reference->referenceAbstract)){
|
| 1388 |
|
|
$out .= '<h2 class="block-title">Abstract</h2><div class="abstract">' . $reference->referenceAbstract . '</div>';
|
| 1389 |
|
|
}
|
| 1390 |
|
|
|
| 1391 |
|
|
|
| 1392 |
|
|
// Annotations below the table
|
| 1393 |
|
|
$annotations = cdm_fetch_visible_annotations($reference);
|
| 1394 |
e9cc637a
|
Andreas Kohlbecker
|
$out .= cdm_annotations($annotations);
|
| 1395 |
57dabcba
|
Andreas Kohlbecker
|
|
| 1396 |
|
|
$registration_working_set = cdm_ws_get("registrationWorkingSetDTO", array($uuid));
|
| 1397 |
|
|
if($registration_working_set && count($registration_working_set->registrationDTOs) > 0){
|
| 1398 |
|
|
$out .= "<h3>Nomenclatural acts:</h3><div class=\"cdm-item-list registration-item-list\">";
|
| 1399 |
|
|
foreach($registration_working_set->registrationDTOs as $registration_dto){
|
| 1400 |
|
|
if($registration_dto->status == "PUBLISHED"){
|
| 1401 |
|
|
$registration_render_a = compose_registration_dto_compact($registration_dto, 'citation');
|
| 1402 |
|
|
$registration_render_a["#prefix"] = "<div class=\"item item-registration\">";
|
| 1403 |
|
|
$registration_render_a["#suffix"] = "</div>";
|
| 1404 |
|
|
$out .= drupal_render($registration_render_a);
|
| 1405 |
|
|
}
|
| 1406 |
|
|
}
|
| 1407 |
|
|
$out .= "</div>";
|
| 1408 |
|
|
}
|
| 1409 |
|
|
|
| 1410 |
|
|
RenderHints::popFromRenderStack();
|
| 1411 |
|
|
|
| 1412 |
|
|
return markup_to_render_array($out);
|
| 1413 |
|
|
}
|
| 1414 |
|
|
|
| 1415 |
4feeabc7
|
Andreas Kohlbecker
|
/**
|
| 1416 |
|
|
* Provides the the label string for taxon page tabs.
|
| 1417 |
|
|
*
|
| 1418 |
|
|
* The $tabname as passed to the method will be returned if no override
|
| 1419 |
|
|
* label is configured in the settings.
|
| 1420 |
|
|
*/
|
| 1421 |
|
|
function cdm_taxonpage_tab_label($tabname) {
|
| 1422 |
|
|
static $taxon_tabs_labels = null;
|
| 1423 |
|
|
if($taxon_tabs_labels == null){
|
| 1424 |
|
|
$taxon_tabs_labels = get_array_variable_merged(CDM_TAXONPAGE_TAB_LABELS, CDM_TAXONPAGE_TAB_LABELS_DEFAULT);
|
| 1425 |
|
|
}
|
| 1426 |
|
|
$tabname_key = strtolower($tabname);
|
| 1427 |
|
|
if(isset($taxon_tabs_labels[$tabname_key]) && $taxon_tabs_labels[$tabname_key]){
|
| 1428 |
|
|
return $taxon_tabs_labels[$tabname_key];
|
| 1429 |
|
|
}
|
| 1430 |
|
|
return $tabname;
|
| 1431 |
|
|
}
|