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<?php
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/**
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* Returns the localized representations of the modifiers hold by the
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* supplied cdm instance concatenated into one string.
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*
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* @param object $iModifieable
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* cdm instance of an class implementing the interface IModifieable:
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* DescriptionElementBase, StateDate, State
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*
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* @return String
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* localized representations of the modifiers hold by the
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* supplied cdm instance concatenated into one string
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*/
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function cdm_modifers_representations($iModifieable, $glue = ', ') {
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$modifiers_strings = array();
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if (isset($iModifieable->modifiers)) {
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foreach ($iModifieable->modifiers as $modifier) {
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$modifiers_strings[] = cdm_term_representation($modifier);
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}
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}
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return implode(', ', $modifiers_strings);
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}
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/**
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* Filters the given set of description elements and prefers computed elements over others.
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*
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* Computed description elements
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* are identified by the MarkerType.COMPUTED()
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*
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* If the given set contains at least one computed element only
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* the computed elements are returned.
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*
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* @param array $description_elements
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* An array of CDM DescriptionElementBase instances
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*
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* @return array
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* only the computed description elements otherwise all others.
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*
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* @deprecated this is replaced by the cdmlib DistributionUtil class!!!
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*/
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function cdm_description_elements_prefer_computed($description_elements){
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$computed_elements = array();
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$other_elements = array();
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if (!empty($description_elements)) {
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foreach ($description_elements as $element) {
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if (cdm_entity_has_marker($element, UUID_MARKERTYPE_COMPUTED)) {
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$computed_elements[] = $element;
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}
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else {
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$other_elements[] = $element;
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}
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}
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}
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if (count($computed_elements) > 0) {
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return $computed_elements;
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}
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else {
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return $other_elements;
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}
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}
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/**
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* Creates a query parameter array based on the setting stored in the drupal variable CDM_DISTRIBUTION_FILTER.
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*
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* @return array
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* An array with distribution filter query parameters
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*/
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function cdm_distribution_filter_query() {
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$cdm_distribution_filter = get_array_variable_merged(CDM_DISTRIBUTION_FILTER, CDM_DISTRIBUTION_FILTER_DEFAULT);
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$query = array();
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if ($cdm_distribution_filter['filter_rules']['statusOrderPreference']) {
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$query['statusOrderPreference'] = 1;
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}
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if ($cdm_distribution_filter['filter_rules']['subAreaPreference']) {
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$query['subAreaPreference'] = 1;
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}
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if (is_array($cdm_distribution_filter['hiddenAreaMarkerType']) && count($cdm_distribution_filter['hiddenAreaMarkerType']) > 0) {
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$query['hiddenAreaMarkerType'] = '';
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foreach ($cdm_distribution_filter['hiddenAreaMarkerType'] as $marker_type => $enabled) {
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if ($enabled) {
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$query['hiddenAreaMarkerType'] .= ($query['hiddenAreaMarkerType'] ? ',' : '') . $marker_type;
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}
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}
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}
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return $query;
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}
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/**
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* Merge the fields 'annotations', 'markers', 'sources', 'media' from the source CDM DescriptionElement into the target.
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*
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* @param object $target
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* The source CDM DescriptionElement
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* @param object $source
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* The target CDM DescriptionElement
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*/
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function cdm_merge_description_elements(&$target, &$source) {
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static $fields_to_merge = array('annotations', 'markers', 'sources', 'media');
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foreach ($fields_to_merge as $field) {
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if (is_array($source->$field)) {
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if (!is_array($target->$field)) {
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$target->$field = $source->$field;
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}
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else {
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$target->$field = array_merge($target->$field, $source->$field);
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}
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}
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}
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}
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/**
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* Adds an entry to the end of the table of content items list
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*
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* The table of content items are crated internally by calling
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* toc_list_item() the resulting item is added to the statically cached
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* list of toc elements
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*
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* @param string $label
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* The label of toc entry
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* @param $class_attribute_suffix
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* The suffix to be appended to the class attribute prefix: "feature-toc-item-"
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* @param string $fragment
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* Optional parameter to define a url fragment different from the $label,
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* if the $fragment is not defined the $label will be used
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*/
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function cdm_toc_list_add_item($label, $class_attribute_suffix, $fragment = NULL, $as_first_element = FALSE) {
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$toc_list_items = &cdm_toc_list();
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if (!$fragment) {
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$fragment = $label;
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}
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$fragment = generalizeString($fragment);
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$class_attributes = 'feature-toc-item-' . $class_attribute_suffix;
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$new_item = toc_list_item(
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theme(
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'cdm_feature_name',
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array('feature_name' => $label)),
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array('class' => $class_attributes),
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$fragment
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);
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if ($as_first_element) {
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array_unshift($toc_list_items, $new_item);
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}
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else {
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$toc_list_items[] = $new_item;
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}
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}
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/**
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* Returns the statically cached table of content items as render array.
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*
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* @see cdm_toc_list_add_item()
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*
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* @return array
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* a render array of table of content items suitable for theme_item_list()
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*/
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function &cdm_toc_list(){
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$toc_list_items = &drupal_static('toc_list_items', array());
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return $toc_list_items;
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}
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/**
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* Prepares an empty Drupal block for displaying description elements of a specific CDM Feature.
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*
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* The block can also be used for pseudo Features like a bibliography. Pseudo features are
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* derived from other data on the fly and so not exist as such in the cdm data. In case
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* of pseudo features the $feature is left empty
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*
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* @param $feature_name
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* A label describing the feature, usually the localized feature representation.
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* @param object $feature
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* The CDM Feature for which the block is created. (optional)
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* @return object
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* A Drupal block object
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*/
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function feature_block($feature_name, $feature = NULL) {
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$block = new stdclass(); // Empty object.
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$block->module = 'cdm_dataportal';
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$block->delta = generalizeString($feature_name);
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$block->region = NULL;
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$block->subject = '<a name="' . $block->delta . '"></a><span class="' . html_class_attribute_ref($feature) . '">'
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. theme('cdm_feature_name', array('feature_name' => $feature_name))
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. '</span>';
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$block->module = "cdm_dataportal-feature";
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$block->content = '';
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return $block;
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}
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/**
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* Returns a list of a specific type of IdentificationKeys.
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*
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* The list can be restricted by a taxon.
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*
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* @param string $type
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* The simple name of the cdm class implementing the interface
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* IdentificationKey, valid values are:
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* PolytomousKey, MediaKey, MultiAccessKey.
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* @param string $taxonUuid
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* If given this parameter restrict the listed keys to those which have
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* the taxon identified be this uuid in scope.
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*
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* @return array
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* List with identification keys.
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*/
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function _list_IdentificationKeys($type, $taxonUuid = NULL, $pageSize = NULL, $pageNumber = NULL) {
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if (!$type) {
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drupal_set_message(t('Type parameter is missing'), 'error');
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return;
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}
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$cdm_ws_pasepath = NULL;
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switch ($type) {
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case "PolytomousKey":
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$cdm_ws_pasepath = CDM_WS_POLYTOMOUSKEY;
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break;
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case "MediaKey":
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$cdm_ws_pasepath = CDM_WS_MEDIAKEY;
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break;
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case "MultiAccessKey":
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$cdm_ws_pasepath = CDM_WS_MULTIACCESSKEY;
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break;
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}
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if (!$cdm_ws_pasepath) {
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drupal_set_message(t('Type parameter is not valid: ') . $type, 'error');
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}
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$queryParameters = '';
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if (is_numeric($pageSize)) {
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$queryParameters = "pageSize=" . $pageSize;
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}
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else {
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$queryParameters = "pageSize=0";
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}
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249
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250
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if (is_numeric($pageNumber)) {
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$queryParameters = "pageNumber=" . $pageNumber;
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252
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}
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else {
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254
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$queryParameters = "pageNumber=0";
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}
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256
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$queryParameters = NULL;
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257
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if ($taxonUuid) {
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258
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$queryParameters = "findByTaxonomicScope=$taxonUuid";
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259
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}
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260
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$pager = cdm_ws_get($cdm_ws_pasepath, NULL, $queryParameters);
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261
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262
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if (!$pager || $pager->count == 0) {
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263
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return array();
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264
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}
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265
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return $pager->records;
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266
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}
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267
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268
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269
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/**
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270
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* Creates a list item for a table of content, suitable as data element for a themed list
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271
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*
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272
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* @see theme_list()
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273
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*
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274
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* @param $label
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275
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* @param $http_request_params
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276
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* @param $attributes
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277
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* @return array
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278
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*/
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279
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function toc_list_item($label, $attributes = array(), $fragment = null) {
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280
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281
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// we better cache here since drupal_get_query_parameters has no internal static cache variable
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282
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$http_request_params = drupal_static('http_request_params', drupal_get_query_parameters());
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283
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284
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$item = array(
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285
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'data' => l(
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286
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$label,
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287
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$_GET['q'],
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288
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array(
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289
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'attributes' => array('class' => array('toc')),
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290
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'fragment' => generalizeString($label),
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291
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'query' => $http_request_params,
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292
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)
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293
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),
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294
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);
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295
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$item['attributes'] = $attributes;
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296
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return $item;
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297
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}
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298
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299
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/**
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300
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* Creates the footnotes for the given CDM DescriptionElement instance.
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301
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*
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302
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* Footnotes are created for annotations and original sources,
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303
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* optionally the sources are put into a separate bibliography.
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304
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*
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305
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* @param $descriptionElement
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306
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* A CDM DescriptionElement instance
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307
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* @param $separator
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308
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* Optional parameter. The separator string to concatenate the footnote ids, default is ','
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309
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* @param $footnote_list_key_suggestion
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310
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* will be overridden for original sources if the bibliography block is enabled
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311
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*
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312
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* @return String
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313
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* The foot note keys
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314
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*/
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315
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function cdm_create_description_element_footnotes($description_element, $separator = ',',
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316
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$footnote_list_key_suggestion = null, $do_link_to_reference = FALSE,
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317
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$do_link_to_name_used_in_source = FALSE
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318
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){
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319
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|
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320
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321
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// Annotations as footnotes.
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322
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$footNoteKeys = cdm_annotations_as_footnotekeys($description_element, $footnote_list_key_suggestion);
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323
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324
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// Source references as footnotes.
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325
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$bibliography_settings = get_bibliography_settings();
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326
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$original_source_footnote_tag = $bibliography_settings['enabled'] == 1 ? 'div' : null; // null will cause original_source_footnote_list_key to use the default
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327
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|
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328
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usort($description_element->sources, 'compare_original_sources');
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329
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foreach ($description_element->sources as $source) {
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330
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if (_is_original_source_type($source)) {
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331
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$fn_key = FootnoteManager::addNewFootnote(
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332
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original_source_footnote_list_key($footnote_list_key_suggestion),
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333
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theme('cdm_OriginalSource', array(
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334
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'source' => $source,
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335
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'doLink' => $do_link_to_reference,
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336
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'do_link_to_name_used_in_source' => $do_link_to_name_used_in_source
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337
|
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338
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)),
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339
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$original_source_footnote_tag
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340
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);
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341
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// Ensure uniqueness of the footnote keys.
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342
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cdm_add_footnote_to_array($footNoteKeys, $fn_key);
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|
343
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}
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|
344
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}
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345
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// Sort and render footnote keys.
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|
346
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$footnoteKeyListStr = '';
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347
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asort($footNoteKeys);
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|
348
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foreach ($footNoteKeys as $footNoteKey) {
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349
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$footnoteKeyListStr .= theme('cdm_footnote_key',
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350
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array(
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351
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'footnoteKey' => $footNoteKey,
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352
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'separator' => ($footnoteKeyListStr ? $separator : '')));
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353
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}
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354
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return $footnoteKeyListStr;
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|
355
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}
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|
356
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|
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357
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|
|
358
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/**
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|
359
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* Compare callback to be used in usort() to sort render arrays produced by compose_description_element().
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|
360
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*
|
|
361
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* @param $a
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|
362
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* @param $b
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|
363
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*/
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|
364
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function compare_description_element_render_arrays($a, $b){
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|
365
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if ($a['#value'].$a['#value-suffix'] == $b['#value'].$b['#value-suffix']) {
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|
366
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return 0;
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|
367
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}
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|
368
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return ($a['#value'].$a['#value-suffix'] < $b['#value'].$b['#value-suffix']) ? -1 : 1;
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|
369
|
|
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370
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}
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|
371
|
|
|
372
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|
|
373
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/**
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|
374
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* @param $render_array
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|
375
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* @param $element
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|
376
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* @param $feature_block_settings
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|
377
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* @param $element_markup
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|
378
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* @param $footnote_list_key_suggestion
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|
379
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*/
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|
380
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function compose_description_element($element, $feature_block_settings, $element_markup, $footnote_list_key_suggestion)
|
|
381
|
{
|
|
382
|
|
|
383
|
$render_array = array(
|
|
384
|
'#type' => 'html_tag',
|
|
385
|
'#tag' => cdm_feature_block_element_tag_name($feature_block_settings),
|
|
386
|
|
|
387
|
'#attributes' => array(
|
|
388
|
'class' => array(
|
|
389
|
'DescriptionElement',
|
|
390
|
'DescriptionElement-' . $element->class,
|
|
391
|
html_class_attribute_ref($element)
|
|
392
|
)
|
|
393
|
),
|
|
394
|
|
|
395
|
'#value' => '',
|
|
396
|
'#value_suffix' => NULL
|
|
397
|
|
|
398
|
);
|
|
399
|
|
|
400
|
$annotations_and_sources = handle_annotations_and_sources($element, $feature_block_settings, $element_markup, $footnote_list_key_suggestion);
|
|
401
|
|
|
402
|
// handle the special case were the TextData is used as container for original source with name
|
|
403
|
// used in source information without any text stored in it.
|
|
404
|
$names_used_in_source_markup = '';
|
|
405
|
if (!empty($annotations_and_sources['names_used_in_source']) && empty($element_markup)) {
|
|
406
|
// $element_text == NULL usually occurs only in the case of CITATIONS!!!
|
|
407
|
$names_used_in_source_markup = join(', ', $annotations_and_sources['names_used_in_source']) . ': ';
|
|
408
|
}
|
|
409
|
|
|
410
|
$source_references_markup = '';
|
|
411
|
if (!empty($annotations_and_sources['source_references'])) {
|
|
412
|
$source_references_markup = '<span class="sources">' . join(' ', $annotations_and_sources['source_references']) . '<span>';
|
|
413
|
}
|
|
414
|
|
|
415
|
$render_array['#value'] = $names_used_in_source_markup . $element_markup . $source_references_markup;
|
|
416
|
$render_array['#value_suffix'] = $annotations_and_sources['foot_note_keys'];
|
|
417
|
|
|
418
|
return $render_array;
|
|
419
|
}
|
|
420
|
|
|
421
|
|
|
422
|
/**
|
|
423
|
* @param $element
|
|
424
|
* @param $feature_block_settings
|
|
425
|
* @param $element_text
|
|
426
|
* used to decide if the source references should be enclosed in brackets or not
|
|
427
|
* @param $footnote_list_key_suggestion
|
|
428
|
* @return array
|
|
429
|
* an associative array with the following elements:
|
|
430
|
* - foot_note_keys: all footnote keys as markup
|
|
431
|
* - source_references: an array of the source references citations
|
|
432
|
* - names used in source: an associative array of the names in source,
|
|
433
|
* the name in source strings are de-duplicated
|
|
434
|
* !!!NOTE!!!!: this field will most probably be removed soon (TODO)
|
|
435
|
*
|
|
436
|
*
|
|
437
|
*/
|
|
438
|
function handle_annotations_and_sources($element, $feature_block_settings, $element_text, $footnote_list_key_suggestion) {
|
|
439
|
$annotations_and_sources = array(
|
|
440
|
'foot_note_keys' => NULL,
|
|
441
|
'source_references' => array(),
|
|
442
|
'names_used_in_source' => array()
|
|
443
|
);
|
|
444
|
|
|
445
|
usort($element->sources, 'compare_original_sources');
|
|
446
|
|
|
447
|
if ($feature_block_settings['sources_as_content'] == 1) {
|
|
448
|
foreach ($element->sources as $source) {
|
|
449
|
|
|
450
|
$referenceCitation = theme('cdm_OriginalSource',
|
|
451
|
array(
|
|
452
|
'source' => $source,
|
|
453
|
'doLink' => $feature_block_settings['link_to_reference'] == 1,
|
|
454
|
'do_link_to_name_used_in_source' => $feature_block_settings['link_to_name_used_in_source'] == 1,
|
|
455
|
)
|
|
456
|
);
|
|
457
|
|
|
458
|
if ($referenceCitation) {
|
|
459
|
if (empty($element_text)) {
|
|
460
|
$annotations_and_sources['source_references'][] = $referenceCitation;
|
|
461
|
}
|
|
462
|
else {
|
|
463
|
$annotations_and_sources['source_references'][] = ' (' . $referenceCitation . ')';
|
|
464
|
}
|
|
465
|
}
|
|
466
|
|
|
467
|
$name_in_source_render_array = compose_name_in_source(
|
|
468
|
$source,
|
|
469
|
$feature_block_settings['link_to_name_used_in_source'] == 1
|
|
470
|
);
|
|
471
|
|
|
472
|
if(!empty($name_in_source_render_array)){
|
|
473
|
$annotations_and_sources['names_used_in_source'][$name_in_source_render_array['#_plaintext']] = drupal_render($name_in_source_render_array);
|
|
474
|
}
|
|
475
|
} // END of loop over sources
|
|
476
|
|
|
477
|
// annotations footnotes separate.
|
|
478
|
$annotations_and_sources['foot_note_keys'] = theme('cdm_annotations_as_footnotekeys',
|
|
479
|
array(
|
|
480
|
'cdmBase_list' => $element,
|
|
481
|
'footnote_list_key' => $footnote_list_key_suggestion,
|
|
482
|
)
|
|
483
|
);
|
|
484
|
|
|
485
|
} // END of references inline
|
|
486
|
|
|
487
|
// put sources into bibliography if requested ...
|
|
488
|
if ($feature_block_settings['sources_as_content'] !== 1 || $feature_block_settings['sources_as_content_to_bibliography'] == 1) {
|
|
489
|
$annotations_and_sources['foot_note_keys'] = cdm_create_description_element_footnotes(
|
|
490
|
$element, ',',
|
|
491
|
$footnote_list_key_suggestion,
|
|
492
|
$feature_block_settings['link_to_reference'] == 1,
|
|
493
|
$feature_block_settings['link_to_name_used_in_source'] == 1
|
|
494
|
);
|
|
495
|
}
|
|
496
|
|
|
497
|
return $annotations_and_sources;
|
|
498
|
}
|
|
499
|
|
|
500
|
|
|
501
|
/**
|
|
502
|
*
|
|
503
|
*
|
|
504
|
* @return string
|
|
505
|
* the footnote_list_key
|
|
506
|
*/
|
|
507
|
function original_source_footnote_list_key($key_suggestion = null) {
|
|
508
|
if(!$key_suggestion){
|
|
509
|
$key_suggestion = RenderHints::getFootnoteListKey();
|
|
510
|
}
|
|
511
|
$bibliography_settings = get_bibliography_settings();
|
|
512
|
$footnote_list_key = $bibliography_settings['enabled'] == 1 ? 'BIBLIOGRAPHY' : 'BIBLIOGRAPHY-' . $key_suggestion;
|
|
513
|
return $footnote_list_key;
|
|
514
|
}
|
|
515
|
|
|
516
|
/**
|
|
517
|
* Provides the according tag name for the description element markup which fits the $feature_block_settings['as_list'] value
|
|
518
|
*
|
|
519
|
* @param $feature_block_settings
|
|
520
|
* A feature_block_settings array, for details, please see get_feature_block_settings($feature_uuid = 'DEFAULT')
|
|
521
|
*/
|
|
522
|
function cdm_feature_block_element_tag_name($feature_block_settings){
|
|
523
|
switch ($feature_block_settings['as_list']){
|
|
524
|
case 'ul':
|
|
525
|
case 'ol':
|
|
526
|
return 'li';
|
|
527
|
case 'div':
|
|
528
|
if(isset($feature_block_settings['element_tag'])){
|
|
529
|
return $feature_block_settings['element_tag'];
|
|
530
|
}
|
|
531
|
return 'span';
|
|
532
|
case 'dl':
|
|
533
|
return 'dd';
|
|
534
|
default:
|
|
535
|
return 'div'; // should never happen, throw error instead?
|
|
536
|
}
|
|
537
|
}
|
|
538
|
|
|
539
|
|
|
540
|
/* ==================== COMPOSE FUNCTIONS =============== */
|
|
541
|
|
|
542
|
/**
|
|
543
|
* Returns a set of feature blocks for a taxon profile from the $mergedFeatureNodes of a given $taxon.
|
|
544
|
*
|
|
545
|
* The taxon profile consists of drupal block elements, one for the description elements
|
|
546
|
* of a specific feature. The structure is defined by specific FeatureTree.
|
|
547
|
* The chosen FeatureTree is merged with the list of description elements prior to using this method.
|
|
548
|
*
|
|
549
|
* The merged nodes can be obtained by making use of the
|
|
550
|
* function cdm_ws_descriptions_by_featuretree().
|
|
551
|
*
|
|
552
|
* @see cdm_ws_descriptions_by_featuretree()
|
|
553
|
*
|
|
554
|
* @param $mergedFeatureNodes
|
|
555
|
*
|
|
556
|
* @param $taxon
|
|
557
|
*
|
|
558
|
* @return array
|
|
559
|
* A Drupal render array containing feature blocks and the table of content
|
|
560
|
*
|
|
561
|
* @ingroup compose
|
|
562
|
*/
|
|
563
|
function compose_feature_blocks($mergedFeatureNodes, $taxon) {
|
|
564
|
|
|
565
|
$block_list = array();
|
|
566
|
|
|
567
|
RenderHints::pushToRenderStack('feature_nodes');
|
|
568
|
|
|
569
|
$gallery_settings = getGallerySettings(CDM_DATAPORTAL_DESCRIPTION_GALLERY_NAME);
|
|
570
|
|
|
571
|
// Create a drupal block for each feature
|
|
572
|
foreach ($mergedFeatureNodes as $node) {
|
|
573
|
|
|
574
|
if ((isset($node->descriptionElements['#type']) ||
|
|
575
|
has_feature_node_description_elements($node)) && $node->feature->uuid != UUID_IMAGE) { // skip empty or supressed features
|
|
576
|
|
|
577
|
$feature_name = cdm_term_representation($node->feature, 'Unnamed Feature');
|
|
578
|
$feature_block_settings = get_feature_block_settings($node->feature->uuid);
|
|
579
|
|
|
580
|
$block = feature_block($feature_name, $node->feature);
|
|
581
|
$block->content = array();
|
|
582
|
$block_content_is_empty = TRUE;
|
|
583
|
$block_content_weight = 0;
|
|
584
|
|
|
585
|
/*
|
|
586
|
* Content/DISTRIBUTION.
|
|
587
|
*/
|
|
588
|
|
|
589
|
if ($node->feature->uuid == UUID_DISTRIBUTION) {
|
|
590
|
$block = compose_feature_block_distribution($taxon, $node->descriptionElements, $node->feature);
|
|
591
|
$block_content_is_empty = FALSE;
|
|
592
|
}
|
|
593
|
/*
|
|
594
|
* Content/COMMON_NAME.
|
|
595
|
*/
|
|
596
|
else if ($node->feature->uuid == UUID_COMMON_NAME) {
|
|
597
|
$common_names_render_array = compose_feature_block_items_feature_common_name($node->descriptionElements, $node->feature);
|
|
598
|
$block->content[] = $common_names_render_array;
|
|
599
|
$block_content_is_empty = FALSE;
|
|
600
|
}
|
|
601
|
|
|
602
|
else if ($node->feature->uuid == UUID_USE_RECORD) {
|
|
603
|
$block_uses_content_html = theme('cdm_block_Uses', array('taxonUuid' => $taxon->uuid));
|
|
604
|
$block->content[] = markup_to_render_array($block_uses_content_html);
|
|
605
|
$block_content_is_empty = FALSE;
|
|
606
|
}
|
|
607
|
|
|
608
|
/*
|
|
609
|
* Content/ALL OTHER FEATURES.
|
|
610
|
*/
|
|
611
|
else {
|
|
612
|
|
|
613
|
$media_list = array();
|
|
614
|
$out_child_elements = '';
|
|
615
|
|
|
616
|
if (isset($node->descriptionElements)) {
|
|
617
|
$elements_render_array = compose_feature_block_items_generic($node->descriptionElements, $node->feature);
|
|
618
|
$block_content_is_empty = empty($elements_render_array);
|
|
619
|
$block->content[] = $elements_render_array;
|
|
620
|
}
|
|
621
|
|
|
622
|
// Content/ALL OTHER FEATURES/Subordinate Features
|
|
623
|
// subordinate features are printed inline in one floating text,
|
|
624
|
// it is expected hat subordinate features can "contain" TextData,
|
|
625
|
// Qualitative- and Qualitative- DescriptioneElements
|
|
626
|
if (isset($node->childNodes[0])) {
|
|
627
|
|
|
628
|
// TODO support more than one level of children.
|
|
629
|
// can this be solved by recursively calling this function?
|
|
630
|
// @see http://dev.e-taxonomy.eu/trac/ticket/2393
|
|
631
|
$text = '';
|
|
632
|
foreach ($node->childNodes as $child) {
|
|
633
|
|
|
634
|
if (isset($child->descriptionElements) && is_array($child->descriptionElements)) {
|
|
635
|
foreach ($child->descriptionElements as $element) {
|
|
636
|
|
|
637
|
//TODO it would be better if we could use compose_feature_block_items_generic() directly instead of the below stuff
|
|
638
|
|
|
639
|
if (is_array($element->media)) {
|
|
640
|
// Append media of subordinate elements to list of main
|
|
641
|
// feature.
|
|
642
|
$media_list = array_merge($media_list, $element->media);
|
|
643
|
}
|
|
644
|
|
|
645
|
switch ($element->class) {
|
|
646
|
case 'TextData':
|
|
647
|
// FIXME use compose_description_element_text_data()
|
|
648
|
if(isset($element->multilanguageText_L10n->text)){
|
|
649
|
$out_child_elements = str_replace("\n", "<br/>", $element->multilanguageText_L10n->text);
|
|
650
|
}
|
|
651
|
$out_child_elements = str_replace($child->feature->titleCache, '<em>' . $child->feature->representation_L10n . '</em>', $out_child_elements);
|
|
652
|
break;
|
|
653
|
case 'CategoricalData':
|
|
654
|
$out_child_elements = '<em>' . $child->feature->representation_L10n . '</em> '
|
|
655
|
. compose_description_element_categorical_data($element, $feature_block_settings);
|
|
656
|
break;
|
|
657
|
case 'QuantitativeData':
|
|
658
|
$out_child_elements = '<em>' . $child->feature->representation_L10n . '</em> '
|
|
659
|
. compose_description_element_quantitative_data($element, $feature_block_settings);
|
|
660
|
|
|
661
|
}
|
|
662
|
|
|
663
|
}
|
|
664
|
$text .= " " . $out_child_elements;
|
|
665
|
$out_child_elements = '';
|
|
666
|
}
|
|
667
|
}
|
|
668
|
$block_content_is_empty = $block_content_is_empty && empty($text);
|
|
669
|
$block->content[] = markup_to_render_array($text);
|
|
670
|
$block_content_is_empty = $block_content_is_empty && empty($media_list);
|
|
671
|
}
|
|
672
|
|
|
673
|
$block->content[] = compose_feature_media_gallery($node, $media_list, $gallery_settings);
|
|
674
|
/*
|
|
675
|
* Footnotes for the feature block
|
|
676
|
*/
|
|
677
|
$block->content[] = markup_to_render_array(theme('cdm_footnotes', array('footnoteListKey' => 'BIBLIOGRAPHY-' . $node->feature->uuid)));
|
|
678
|
$block->content[] = markup_to_render_array(theme('cdm_footnotes', array('footnoteListKey' => $node->feature->uuid)));
|
|
679
|
$block->content[] = markup_to_render_array(theme('cdm_annotation_footnotes', array('footnoteListKey' => $node->feature->uuid)));
|
|
680
|
} // END all other features
|
|
681
|
|
|
682
|
// allows modifying the block contents via a the hook_cdm_feature_node_block_content_alter
|
|
683
|
drupal_alter('cdm_feature_node_block_content', $block->content, $node->feature, $node->descriptionElements);
|
|
684
|
|
|
685
|
if(!$block_content_is_empty){ // skip empty block content
|
|
686
|
$block_list[] = $block;
|
|
687
|
cdm_toc_list_add_item(cdm_term_representation($node->feature), $node->feature->uuid);
|
|
688
|
} // END: skip empty block content
|
|
689
|
} // END: skip empty or supressed features
|
|
690
|
} // END: creating a block per feature
|
|
691
|
|
|
692
|
drupal_alter('cdm_feature_node_blocks', $block_list, $taxon);
|
|
693
|
|
|
694
|
RenderHints::popFromRenderStack();
|
|
695
|
|
|
696
|
return _block_get_renderable_array($block_list);
|
|
697
|
}
|
|
698
|
|
|
699
|
/**
|
|
700
|
* @param $node
|
|
701
|
* @param $media_list
|
|
702
|
* @param $gallery_settings
|
|
703
|
* @return array
|
|
704
|
*/
|
|
705
|
function compose_feature_media_gallery($node, $media_list, $gallery_settings) {
|
|
706
|
|
|
707
|
if (isset($node->descriptionElements)) {
|
|
708
|
$media_list = array_merge($media_list, cdm_dataportal_media_from_descriptionElements($node->descriptionElements));
|
|
709
|
}
|
|
710
|
|
|
711
|
$captionElements = array('title', 'rights');
|
|
712
|
|
|
713
|
if (isset($media_list[0]) && isset($gallery_settings['cdm_dataportal_media_maxextend']) && isset($gallery_settings['cdm_dataportal_media_cols'])) {
|
|
714
|
$gallery = theme('cdm_media_gallerie', array(
|
|
715
|
'mediaList' => $media_list,
|
|
716
|
'galleryName' => CDM_DATAPORTAL_DESCRIPTION_GALLERY_NAME . '_' . $node->feature->uuid,
|
|
717
|
'maxExtend' => $gallery_settings['cdm_dataportal_media_maxextend'],
|
|
718
|
'cols' => $gallery_settings['cdm_dataportal_media_cols'],
|
|
719
|
'captionElements' => $captionElements,
|
|
720
|
));
|
|
721
|
return markup_to_render_array($gallery);
|
|
722
|
}
|
|
723
|
|
|
724
|
return markup_to_render_array('');
|
|
725
|
}
|
|
726
|
|
|
727
|
/**
|
|
728
|
* Composes the distribution feature block for a taxon
|
|
729
|
*
|
|
730
|
* @param $taxon
|
|
731
|
* @param $descriptionElements
|
|
732
|
* an associative array with two elements:
|
|
733
|
* - '#type': must be 'DTO'
|
|
734
|
* - 'DistributionInfoDTO': a CDM DistributionInfoDTO object as returned by the DistributionInfo web service
|
|
735
|
* @param $feature
|
|
736
|
*
|
|
737
|
* @return array
|
|
738
|
* A drupal render array
|
|
739
|
*
|
|
740
|
* @ingroup compose
|
|
741
|
*/
|
|
742
|
function compose_feature_block_distribution($taxon, $descriptionElements, $feature) {
|
|
743
|
$text_data_glue = '';
|
|
744
|
$text_data_sortOutArray = FALSE;
|
|
745
|
$text_data_enclosingTag = 'ul';
|
|
746
|
$text_data_out_array = array();
|
|
747
|
|
|
748
|
$distributionElements = NULL;
|
|
749
|
$distribution_info_dto = NULL;
|
|
750
|
$distribution_sortOutArray = FALSE;
|
|
751
|
|
|
752
|
$feature_block_settings = get_feature_block_settings(UUID_DISTRIBUTION);
|
|
753
|
|
|
754
|
// TODO use feature_block_settings instead of DISTRIBUTION_ORDER_MODE
|
|
755
|
if (variable_get(DISTRIBUTION_ORDER_MODE, DISTRIBUTION_ORDER_MODE_DEFAULT) != 'TREE') {
|
|
756
|
$distribution_glue = '';
|
|
757
|
$distribution_enclosingTag = 'dl';
|
|
758
|
} else {
|
|
759
|
$distribution_glue = '';
|
|
760
|
$distribution_enclosingTag = 'ul';
|
|
761
|
}
|
|
762
|
|
|
763
|
if (!isset($descriptionElements['#type']) || !$descriptionElements['#type'] == 'DTO') {
|
|
764
|
// skip the DISTRIBUTION section if there is no DTO type element
|
|
765
|
return array(); // FIXME is it ok to return an empty array?
|
|
766
|
}
|
|
767
|
|
|
768
|
$block = feature_block(
|
|
769
|
cdm_term_representation($feature, 'Unnamed Feature'),
|
|
770
|
$feature
|
|
771
|
);
|
|
772
|
|
|
773
|
// $$descriptionElements['TextData'] is added to to the feature node in merged_taxon_feature_tree()
|
|
774
|
if (isset($descriptionElements['TextData'])) {
|
|
775
|
// --- TextData
|
|
776
|
foreach ($descriptionElements['TextData'] as $text_data_element) {
|
|
777
|
$text_data_render_array = compose_description_element_text_data($text_data_element, $text_data_element->feature->uuid, $feature_block_settings);
|
|
778
|
$repr = drupal_render($text_data_render_array);
|
|
779
|
|
|
780
|
if (!array_search($repr, $text_data_out_array)) { // de-duplication !!
|
|
781
|
$text_data_out_array[] = $repr;
|
|
782
|
// TODO HINT: sorting in compose_feature_block_elements will
|
|
783
|
// not work since this array contains html attributes with uuids
|
|
784
|
// and what is about cases like the bibliography where
|
|
785
|
// any content can be prefixed with some foot-note anchors?
|
|
786
|
$text_data_sortOutArray = TRUE;
|
|
787
|
$text_data_glue = '<br/> ';
|
|
788
|
$text_data_enclosingTag = 'p';
|
|
789
|
}
|
|
790
|
}
|
|
791
|
}
|
|
792
|
|
|
793
|
|
|
794
|
if ($text_data_out_array && variable_get(DISTRIBUTION_TEXTDATA_DISPLAY_ON_TOP, 0)) {
|
|
795
|
$block->content[] = compose_feature_block_elements(
|
|
796
|
$text_data_out_array, $feature, $text_data_glue, $text_data_sortOutArray
|
|
797
|
);
|
|
798
|
}
|
|
799
|
|
|
800
|
// --- Distribution map
|
|
801
|
$distribution_map_query_parameters = NULL;
|
|
802
|
if (isset($descriptionElements['DistributionInfoDTO'])) {
|
|
803
|
$distribution_map_query_parameters = $descriptionElements['DistributionInfoDTO']->mapUriParams;
|
|
804
|
}
|
|
805
|
$map_render_element = compose_distribution_map($taxon, $distribution_map_query_parameters);
|
|
806
|
$block->content[] = $map_render_element;
|
|
807
|
|
|
808
|
$dto_out_array = array();
|
|
809
|
|
|
810
|
// --- Condensed Distribution
|
|
811
|
if(variable_get(DISTRIBUTION_CONDENSED) && isset($descriptionElements['DistributionInfoDTO']->condensedDistribution)){
|
|
812
|
$condensed_distribution_markup = '<p class="condensed_distribution">';
|
|
813
|
|
|
814
|
$isFirst = true;
|
|
815
|
if(isset($descriptionElements['DistributionInfoDTO']->condensedDistribution->indigenous[0])){
|
|
816
|
foreach($descriptionElements['DistributionInfoDTO']->condensedDistribution->indigenous as $cdItem){
|
|
817
|
if(!$isFirst){
|
|
818
|
$condensed_distribution_markup .= ' ';
|
|
819
|
}
|
|
820
|
$condensed_distribution_markup .= '<span class="status_' . $cdItem->status->idInVocabulary . '">'
|
|
821
|
. $cdItem->areaStatusLabel . '</span>';
|
|
822
|
$isFirst = false;
|
|
823
|
}
|
|
824
|
}
|
|
825
|
|
|
826
|
if(isset($descriptionElements['DistributionInfoDTO']->condensedDistribution->foreign[0])) {
|
|
827
|
if(!$isFirst){
|
|
828
|
$condensed_distribution_markup .= ' ';
|
|
829
|
}
|
|
830
|
$isFirst = TRUE;
|
|
831
|
$condensed_distribution_markup .= '[';
|
|
832
|
foreach ($descriptionElements['DistributionInfoDTO']->condensedDistribution->foreign as $cdItem) {
|
|
833
|
if (!$isFirst) {
|
|
834
|
$condensed_distribution_markup .= ' ';
|
|
835
|
}
|
|
836
|
$condensed_distribution_markup .= '<span class="status_' . $cdItem->status->titleCache . '">'
|
|
837
|
. $cdItem->areaStatusLabel . '</span>';
|
|
838
|
$isFirst = false;
|
|
839
|
}
|
|
840
|
$condensed_distribution_markup .= ']';
|
|
841
|
}
|
|
842
|
|
|
843
|
$condensed_distribution_markup .= ' ' . l(
|
|
844
|
font_awesome_icon_markup(
|
|
845
|
'fa-info-circle',
|
|
846
|
array(
|
|
847
|
'alt'=>'help',
|
|
848
|
'class' => array('superscript')
|
|
849
|
)
|
|
850
|
),
|
|
851
|
'cdm_dataportal/help/condensed_distribution',
|
|
852
|
array('html' => TRUE));
|
|
853
|
$condensed_distribution_markup .= '</p>';
|
|
854
|
$dto_out_array[] = $condensed_distribution_markup;
|
|
855
|
}
|
|
856
|
|
|
857
|
// --- tree or list
|
|
858
|
if (isset($descriptionElements['DistributionInfoDTO'])) {
|
|
859
|
$distribution_info_dto = $descriptionElements['DistributionInfoDTO'];
|
|
860
|
|
|
861
|
// --- tree
|
|
862
|
if (is_object($distribution_info_dto->tree)) {
|
|
863
|
$distribution_tree_render_array = compose_distribution_hierarchy($distribution_info_dto->tree, $feature_block_settings);
|
|
864
|
$dto_out_array[] = $distribution_tree_render_array;
|
|
865
|
}
|
|
866
|
|
|
867
|
// --- sorted element list
|
|
868
|
if (is_array($distribution_info_dto->elements) && count($distribution_info_dto->elements) > 0) {
|
|
869
|
foreach ($distribution_info_dto->elements as $descriptionElement) {
|
|
870
|
if (is_object($descriptionElement->area)) {
|
|
871
|
$sortKey = $descriptionElement->area->representation_L10n;
|
|
872
|
$distributionElements[$sortKey] = $descriptionElement;
|
|
873
|
}
|
|
874
|
}
|
|
875
|
ksort($distributionElements);
|
|
876
|
$distribution_element_render_array = compose_description_elements_distribution($distributionElements);
|
|
877
|
$dto_out_array[] = $distribution_element_render_array;
|
|
878
|
|
|
879
|
}
|
|
880
|
//
|
|
881
|
$block->content[] = compose_feature_block_elements(
|
|
882
|
$dto_out_array, $feature, $distribution_glue, $distribution_sortOutArray
|
|
883
|
);
|
|
884
|
}
|
|
885
|
|
|
886
|
// --- TextData at the bottom
|
|
887
|
if ($text_data_out_array && !variable_get(DISTRIBUTION_TEXTDATA_DISPLAY_ON_TOP, 0)) {
|
|
888
|
$block->content[] = compose_feature_block_elements(
|
|
889
|
$text_data_out_array, $feature, $text_data_glue, $text_data_sortOutArray
|
|
890
|
);
|
|
891
|
}
|
|
892
|
|
|
893
|
$block->content[] = markup_to_render_array(theme('cdm_footnotes', array('footnoteListKey' => 'BIBLIOGRAPHY-' . UUID_DISTRIBUTION)));
|
|
894
|
$block->content[] = markup_to_render_array(theme('cdm_footnotes', array('footnoteListKey' => UUID_DISTRIBUTION)));
|
|
895
|
$block->content[] = markup_to_render_array(theme('cdm_annotation_footnotes', array('footnoteListKey' => UUID_DISTRIBUTION)));
|
|
896
|
|
|
897
|
return $block;
|
|
898
|
}
|
|
899
|
|
|
900
|
|
|
901
|
/**
|
|
902
|
* Composes a drupal render array for single CDM TextData description element.
|
|
903
|
*
|
|
904
|
* @param $element
|
|
905
|
* The CDM TextData description element.
|
|
906
|
* @param $feature_uuid
|
|
907
|
*
|
|
908
|
* @return array
|
|
909
|
* A drupal render array with the following elements being used:
|
|
910
|
* - #tag: either 'div', 'li', ...
|
|
911
|
* ⁻ #attributes: class attributes
|
|
912
|
* - #value_prefix: (optionally) contains footnote anchors
|
|
913
|
* - #value: contains the textual content
|
|
914
|
* - #value_suffix: (optionally) contains footnote keys
|
|
915
|
*
|
|
916
|
* @ingroup compose
|
|
917
|
*/
|
|
918
|
function compose_description_element_text_data($element, $feature_uuid, $feature_block_settings) {
|
|
919
|
|
|
920
|
$footnote_list_key_suggestion = $feature_uuid;
|
|
921
|
|
|
922
|
/*
|
|
923
|
// FIXME remove this hack ---------------------------
|
|
924
|
$default_theme = variable_get('theme_default', NULL);
|
|
925
|
if($default_theme == 'garland_cichorieae' || $default_theme == 'cyprus'
|
|
926
|
|| $default_theme == 'flore_afrique_centrale' || $default_theme == 'flora_malesiana' || $default_theme == 'flore_gabon' ){
|
|
927
|
$asListElement = $feature_block_settings['as_list'] == 'ul';
|
|
928
|
}
|
|
929
|
// --------------------------------------------------
|
|
930
|
*/
|
|
931
|
|
|
932
|
$element_markup = '';
|
|
933
|
if (isset($element->multilanguageText_L10n->text)) {
|
|
934
|
// TODO replacement of \n by <br> should be configurable
|
|
935
|
$element_markup = str_replace("\n", "<br/>", $element->multilanguageText_L10n->text);
|
|
936
|
}
|
|
937
|
|
|
938
|
$render_array = compose_description_element($element, $feature_block_settings, $element_markup, $footnote_list_key_suggestion);
|
|
939
|
|
|
940
|
return $render_array;
|
|
941
|
}
|
|
942
|
|
|
943
|
|
|
944
|
/**
|
|
945
|
* Theme function to render CDM DescriptionElements of the type TaxonInteraction.
|
|
946
|
*
|
|
947
|
* @param $element
|
|
948
|
* The CDM TaxonInteraction entity
|
|
949
|
*
|
|
950
|
* @return
|
|
951
|
* A drupal render array
|
|
952
|
*
|
|
953
|
* @ingroup compose
|
|
954
|
*/
|
|
955
|
function compose_description_element_taxon_interaction($element, $feature_block_settings) {
|
|
956
|
|
|
957
|
$out = '';
|
|
958
|
$enclosing_tag = cdm_feature_block_element_tag_name($feature_block_settings);
|
|
959
|
|
|
960
|
if (isset($element->description_L10n)) {
|
|
961
|
$out .= ' ' . $element->description_L10n;
|
|
962
|
}
|
|
963
|
|
|
964
|
if(isset($element->taxon2)){
|
|
965
|
$out = render_taxon_or_name($element->taxon2, url(path_to_taxon($element->taxon2->uuid)));
|
|
966
|
}
|
|
967
|
|
|
968
|
$render_array = compose_description_element($element, $feature_block_settings, $out, $element->feature->uuid);
|
|
969
|
|
|
970
|
return $render_array;
|
|
971
|
}
|
|
972
|
|
|
973
|
|
|
974
|
/**
|
|
975
|
* Renders a single instance of the type IndividualsAssociations.
|
|
976
|
*
|
|
977
|
* @param $element
|
|
978
|
* The CDM IndividualsAssociations entity.
|
|
979
|
* @param $feature_block_settings
|
|
980
|
*
|
|
981
|
* @return array
|
|
982
|
* Drupal render array
|
|
983
|
*
|
|
984
|
* @ingroup compose
|
|
985
|
*/
|
|
986
|
function compose_description_element_individuals_association($element, $feature_block_settings) {
|
|
987
|
|
|
988
|
$out = '';
|
|
989
|
$enclosing_tag = cdm_feature_block_element_tag_name($feature_block_settings);
|
|
990
|
|
|
991
|
$render_array = compose_cdm_specimenOrObservation($element->associatedSpecimenOrObservation);
|
|
992
|
|
|
993
|
if (isset($element->description_L10n)) {
|
|
994
|
$out .= ' ' . $element->description_L10n;
|
|
995
|
}
|
|
996
|
|
|
997
|
$out .= drupal_render($render_array);
|
|
998
|
|
|
999
|
$render_array = compose_description_element($element, $feature_block_settings, $out, $element->feature->uuid);
|
|
1000
|
|
|
1001
|
return $render_array;
|
|
1002
|
}
|
|
1003
|
|
|
1004
|
/**
|
|
1005
|
* Renders a single instance of the type CategoricalData.
|
|
1006
|
*
|
|
1007
|
* @param $element
|
|
1008
|
* The CDM CategoricalData entity#
|
|
1009
|
* @param $feature_block_settings
|
|
1010
|
*
|
|
1011
|
* @return string
|
|
1012
|
* a html representation of the given CategoricalData element
|
|
1013
|
*
|
|
1014
|
* @ingroup compose
|
|
1015
|
*/
|
|
1016
|
function compose_description_element_categorical_data($element, $feature_block_settings) {
|
|
1017
|
|
|
1018
|
$enclosing_tag = cdm_feature_block_element_tag_name($feature_block_settings);
|
|
1019
|
|
|
1020
|
$state_data_strings = array();
|
|
1021
|
if (isset($element->stateData)) {
|
|
1022
|
foreach ($element->stateData as $state_data) {
|
|
1023
|
|
|
1024
|
$state = NULL;
|
|
1025
|
|
|
1026
|
if (isset($state_data->state)) {
|
|
1027
|
$state = cdm_term_representation($state_data->state);
|
|
1028
|
}
|
|
1029
|
|
|
1030
|
if (isset($state_data->modifyingText_L10n)) {
|
|
1031
|
$state = ' ' . $state_data->modifyingText_L10n;
|
|
1032
|
}
|
|
1033
|
|
|
1034
|
$modifiers_strings = cdm_modifers_representations($state_data);
|
|
1035
|
|
|
1036
|
$state_data_strings[] = $state . ($modifiers_strings ? ' ' . $modifiers_strings : '');
|
|
1037
|
|
|
1038
|
}
|
|
1039
|
}
|
|
1040
|
|
|
1041
|
$out = '<span class="' . html_class_attribute_ref($element) . '">' . implode(', ', $state_data_strings) . '</span>';
|
|
1042
|
|
|
1043
|
$render_array = compose_description_element($element, $feature_block_settings, $out, $element->feature->uuid);
|
|
1044
|
|
|
1045
|
return $render_array;
|
|
1046
|
}
|
|
1047
|
|
|
1048
|
|
|
1049
|
/**
|
|
1050
|
* Theme function to render CDM DescriptionElements of the type QuantitativeData.
|
|
1051
|
*
|
|
1052
|
* The function renders the statisticalValues contained in the QuantitativeData
|
|
1053
|
* entity according to the following scheme:
|
|
1054
|
*
|
|
1055
|
* (ExtremeMin)-Min-Average-Max-(ExtremeMax)
|
|
1056
|
*
|
|
1057
|
* All modifiers of these values are appended.
|
|
1058
|
*
|
|
1059
|
* If the QuantitativeData is containing more statisticalValues with further
|
|
1060
|
* statisticalValue types, these additional measures will be appended to the
|
|
1061
|
* above string separated by whitespace.
|
|
1062
|
*
|
|
1063
|
* Special cases;
|
|
1064
|
* 1. Min==Max: this will be interpreted as Average
|
|
1065
|
*
|
|
1066
|
* @param array $variables
|
|
1067
|
* An associative array containing:
|
|
1068
|
* - element: the QuantitativeData element
|
|
1069
|
*
|
|
1070
|
* @return string
|
|
1071
|
* a html representation of the given QuantitativeData element
|
|
1072
|
*
|
|
1073
|
* @ingroup themeable
|
|
1074
|
*/
|
|
1075
|
function compose_description_element_quantitative_data($element, $feature_block_settings) {
|
|
1076
|
/*
|
|
1077
|
* - statisticalValues
|
|
1078
|
* - value
|
|
1079
|
* - modifiers
|
|
1080
|
* - type
|
|
1081
|
* - unit->representation_L10n
|
|
1082
|
* - modifyingText
|
|
1083
|
* - modifiers
|
|
1084
|
* - sources
|
|
1085
|
*/
|
|
1086
|
|
|
1087
|
$out = '';
|
|
1088
|
$type_representation = NULL;
|
|
1089
|
$min_max = min_max_array();
|
|
1090
|
|
|
1091
|
|
|
1092
|
$other_values = array();
|
|
1093
|
|
|
1094
|
if (isset($element->statisticalValues)) {
|
|
1095
|
$other_values_markup = array();
|
|
1096
|
foreach ($element->statisticalValues as $statistical_val) {
|
|
1097
|
|
|
1098
|
// compile the full value string which also may contain modifiers
|
|
1099
|
if (isset($statistical_val->value)) {
|
|
1100
|
$statistical_val->_value = $statistical_val->value;
|
|
1101
|
}
|
|
1102
|
$val_modifiers_strings = cdm_modifers_representations($statistical_val);
|
|
1103
|
if ($val_modifiers_strings) {
|
|
1104
|
$statistical_val->_value = ' ' . $val_modifiers_strings . ' ' . $statistical_val->_value;
|
|
1105
|
}
|
|
1106
|
|
|
1107
|
// either put into min max array or into $other_values
|
|
1108
|
// for generic output to be appended to 'min-max' string
|
|
1109
|
if (array_key_exists($statistical_val->type->titleCache, $min_max)) {
|
|
1110
|
$min_max[$statistical_val->type->titleCache] = $statistical_val;
|
|
1111
|
}
|
|
1112
|
else {
|
|
1113
|
$other_values[] = $statistical_val;
|
|
1114
|
}
|
|
1115
|
} // end of loop over statisticalValues
|
|
1116
|
|
|
1117
|
// create markup
|
|
1118
|
|
|
1119
|
$min_max_markup = min_max_markup($min_max);
|
|
1120
|
|
|
1121
|
|
|
1122
|
foreach ($other_values as $statistical_val) {
|
|
1123
|
$statistical_val_type_representation = NULL;
|
|
1124
|
if (isset($statistical_val->type)) {
|
|
1125
|
$statistical_val_type_representation = cdm_term_representation($statistical_val->type);
|
|
1126
|
// $statistical_val->type->termType;
|
|
1127
|
// $statistical_val->type->userFriendlyTypeName;
|
|
1128
|
}
|
|
1129
|
$value_markup = '<span class="' . html_class_attribute_ref($statistical_val) . ' ' . $statistical_val->type->termType . ' ">'
|
|
1130
|
. $statistical_val->_value . '</span>';
|
|
1131
|
$value_markup = $value_markup .
|
|
1132
|
($statistical_val_type_representation ? ' <span class="type">' . $statistical_val_type_representation . '</span>' : '');
|
|
1133
|
$other_values_markup[] = $value_markup;
|
|
1134
|
}
|
|
1135
|
|
|
1136
|
|
|
1137
|
$out .= $min_max_markup . ' ' . implode($other_values_markup, ', ');
|
|
1138
|
}
|
|
1139
|
|
|
1140
|
if (isset($element->unit)) {
|
|
1141
|
$out .= ' <span class="unit" title="'
|
|
1142
|
. cdm_term_representation($element->unit) . '">'
|
|
1143
|
. cdm_term_representation_abbreviated($element->unit)
|
|
1144
|
. '</span>';
|
|
1145
|
}
|
|
1146
|
|
|
1147
|
// modifiers of the description element itself
|
|
1148
|
$modifier_string = cdm_modifers_representations($element);
|
|
1149
|
$out .= ($modifier_string ? ' ' . $modifier_string : '');
|
|
1150
|
if (isset($element->modifyingText_L10n)) {
|
|
1151
|
$out = $element->modifyingText_L10n . ' ' . $out;
|
|
1152
|
}
|
|
1153
|
|
|
1154
|
$render_array = compose_description_element($element, $feature_block_settings, $out, $element->feature->uuid);
|
|
1155
|
|
|
1156
|
return $render_array;
|
|
1157
|
}
|
|
1158
|
|
|
1159
|
|
|
1160
|
/**
|
|
1161
|
* Creates a render array for string representations of description elements for the given feature.
|
|
1162
|
*
|
|
1163
|
* @param array $elements
|
|
1164
|
* An list of render arrays. Which are usually are produced by the compose_description_element()
|
|
1165
|
* function. The render arrays should be of #type=html_tag, so that they can understand the #attribute property.
|
|
1166
|
* @param $feature :
|
|
1167
|
* The feature to which the elements given in $elements are belonging to.
|
|
1168
|
* @param string $glue :
|
|
1169
|
* Defaults to empty string.
|
|
1170
|
* @param bool $sort
|
|
1171
|
* Boolean Whether to sort the $elements alphabetically, default is FALSE
|
|
1172
|
*
|
|
1173
|
* @return array|void
|
|
1174
|
*
|
|
1175
|
* @ingroup compose
|
|
1176
|
*/
|
|
1177
|
function compose_feature_block_elements(array $elements, $feature, $glue = '', $sort = FALSE)
|
|
1178
|
{
|
|
1179
|
|
|
1180
|
$feature_block_settings = get_feature_block_settings($feature->uuid);
|
|
1181
|
$enclosing_tag = $feature_block_settings['as_list'];
|
|
1182
|
|
|
1183
|
if ($sort) { // TODO remove parameter and replace by $feature_block_settings['sort_elements']
|
|
1184
|
usort($elements, 'compare_description_element_render_arrays');
|
|
1185
|
}
|
|
1186
|
|
|
1187
|
$is_first = true;
|
|
1188
|
foreach($elements as &$element_render_array){
|
|
1189
|
if(!is_array($element_render_array)){
|
|
1190
|
$element_render_array = markup_to_render_array($element_render_array);
|
|
1191
|
}
|
|
1192
|
$element_render_array['#attributes']['class'][] = "feature-block-element";
|
|
1193
|
|
|
1194
|
// add the glue!
|
|
1195
|
if(!$is_first) {
|
|
1196
|
if (isset($element_render_array['#value'])) {
|
|
1197
|
$element_render_array['#value'] = $glue . $element_render_array['#value'];
|
|
1198
|
} elseif (isset($element_render_array['#markup'])) {
|
|
1199
|
$element_render_array['#markup'] = $glue . $element_render_array['#markup'];
|
|
1200
|
}
|
|
1201
|
}
|
|
1202
|
$is_first = false;
|
|
1203
|
}
|
|
1204
|
|
|
1205
|
$render_array['elements']['children'] = $elements;
|
|
1206
|
|
|
1207
|
$render_array['elements']['#prefix'] = '<' . $enclosing_tag . ' class="feature-block-elements" id="' . $feature->representation_L10n . '">';
|
|
1208
|
$render_array['elements']['#suffix'] = '</' . $enclosing_tag . '>';
|
|
1209
|
|
|
1210
|
return $render_array;
|
|
1211
|
}
|
|
1212
|
|
|
1213
|
|
|
1214
|
/* compose nameInSource or originalNameString as markup
|
|
1215
|
*
|
|
1216
|
* @param $source
|
|
1217
|
* @param $do_link_to_name_used_in_source
|
|
1218
|
* @param $suppress_for_shown_taxon
|
|
1219
|
* the nameInSource will be suppressed when it has the same name as the accepted taxon
|
|
1220
|
* for which the taxon page is being created, Defaults to TRUE
|
|
1221
|
*
|
|
1222
|
* @return array
|
|
1223
|
* A Drupal render array with an additional element, the render array is empty
|
|
1224
|
* if the source had no name in source information
|
|
1225
|
* - #_plaintext: contains the plaintext version of the name (custom element)
|
|
1226
|
*
|
|
1227
|
* @ingroup compose
|
|
1228
|
*/
|
|
1229
|
function compose_name_in_source($source, $do_link_to_name_used_in_source, $suppress_for_shown_taxon = TRUE) {
|
|
1230
|
|
|
1231
|
$plaintext = NULL;
|
|
1232
|
$markup = NULL;
|
|
1233
|
$name_in_source_render_array = array();
|
|
1234
|
|
|
1235
|
static $taxon_page_accepted_name = '';
|
|
1236
|
if($suppress_for_shown_taxon && arg(1) == 'taxon' && empty($taxon_page_accepted_name)){
|
|
1237
|
|
|
1238
|
$current_taxon = cdm_ws_get(CDM_WS_PORTAL_TAXON, arg(2));
|
|
1239
|
$taxon_page_accepted_name = $current_taxon->name->titleCache;
|
|
1240
|
}
|
|
1241
|
|
|
1242
|
if (isset($source->nameUsedInSource->uuid) && isset($source->nameUsedInSource->titleCache)) {
|
|
1243
|
// it is a DescriptionElementSource !
|
|
1244
|
$plaintext = $source->nameUsedInSource->titleCache;
|
|
1245
|
if($suppress_for_shown_taxon && $taxon_page_accepted_name == $plaintext){
|
|
1246
|
return $name_in_source_render_array; // SKIP this name
|
|
1247
|
}
|
|
1248
|
$markup = render_taxon_or_name($source->nameUsedInSource);
|
|
1249
|
if ($do_link_to_name_used_in_source) {
|
|
1250
|
$markup = l(
|
|
1251
|
$markup,
|
|
1252
|
path_to_name($source->nameUsedInSource->uuid),
|
|
1253
|
array(
|
|
1254
|
'attributes' => array(),
|
|
1255
|
'absolute' => TRUE,
|
|
1256
|
'html' => TRUE,
|
|
1257
|
));
|
|
1258
|
}
|
|
1259
|
}
|
|
1260
|
else if (isset($source->originalNameString) && !empty($source->originalNameString)) {
|
|
1261
|
// the name used in source can not be expressed as valid taxon name,
|
|
1262
|
// so the editor has chosen to put the freetext name into ReferencedEntityBase.originalNameString
|
|
1263
|
// field
|
|
1264
|
// using the originalNameString as key to avoid duplicate entries
|
|
1265
|
$plaintext = $source->originalNameString;
|
|
1266
|
if($suppress_for_shown_taxon && $taxon_page_accepted_name == $plaintext){
|
|
1267
|
return $name_in_source_render_array; // SKIP this name
|
|
1268
|
}
|
|
1269
|
$markup = $source->originalNameString;
|
|
1270
|
}
|
|
1271
|
|
|
1272
|
if ($plaintext) { // checks if we have any content
|
|
1273
|
$name_in_source_render_array = markup_to_render_array($markup);
|
|
1274
|
$name_in_source_render_array['#_plaintext'] = $plaintext;
|
|
1275
|
}
|
|
1276
|
|
|
1277
|
return $name_in_source_render_array;
|
|
1278
|
}
|
|
1279
|
|
|
1280
|
|
|
1281
|
|
|
1282
|
/**
|
|
1283
|
* Return HTML for a list of description elements.
|
|
1284
|
*
|
|
1285
|
* Usually these are of a specific feature type.
|
|
1286
|
*
|
|
1287
|
* @param $descriptionElements
|
|
1288
|
* array of descriptionElements which belong to the same feature.
|
|
1289
|
* These descriptions elements of a Description must be ordered by the chosen feature tree by
|
|
1290
|
* calling the function _mergeFeatureTreeDescriptions().
|
|
1291
|
* @see _mergeFeatureTreeDescriptions()
|
|
1292
|
*
|
|
1293
|
* @param $feature_uuid
|
|
1294
|
*
|
|
1295
|
* @return
|
|
1296
|
* A drupal render array for the $descriptionElements, may be an empty array if the textual content was empty.
|
|
1297
|
* Footnote key or anchors are not considered to be textual content.
|
|
1298
|
*
|
|
1299
|
* @ingroup compose
|
|
1300
|
*/
|
|
1301
|
function compose_feature_block_items_generic($descriptionElements, $feature) {
|
|
1302
|
|
|
1303
|
$render_array = array();
|
|
1304
|
$elements_out_array = array();
|
|
1305
|
$distribution_tree = null;
|
|
1306
|
|
|
1307
|
/*
|
|
1308
|
* $feature_block_has_content will be set true if at least one of the
|
|
1309
|
* $descriptionElements contains some text which makes up some content
|
|
1310
|
* for the feature block. Footnote keys are not considered
|
|
1311
|
* to be content in this sense.
|
|
1312
|
*/
|
|
1313
|
$feature_block_has_content = false;
|
|
1314
|
|
|
1315
|
RenderHints::pushToRenderStack($feature->uuid);
|
|
1316
|
|
|
1317
|
if (is_array($descriptionElements)) {
|
|
1318
|
foreach ($descriptionElements as $descriptionElement) {
|
|
1319
|
/* decide based on the description element class
|
|
1320
|
*
|
|
1321
|
* Features handled here:
|
|
1322
|
* all except DISTRIBUTION, COMMON_NAME, USES, IMAGES,
|
|
1323
|
*
|
|
1324
|
* TODO provide api_hook as extension point for this?
|
|
1325
|
*/
|
|
1326
|
$feature_block_settings = get_feature_block_settings($descriptionElement->feature->uuid);
|
|
1327
|
switch ($descriptionElement->class) {
|
|
1328
|
case 'TextData':
|
|
1329
|
$elements_out_array[] = compose_description_element_text_data($descriptionElement, $descriptionElement->feature->uuid, $feature_block_settings);
|
|
1330
|
break;
|
|
1331
|
case 'CategoricalData':
|
|
1332
|
$elements_out_array[] = compose_description_element_categorical_data($descriptionElement, $feature_block_settings);
|
|
1333
|
break;
|
|
1334
|
case 'QuantitativeData':
|
|
1335
|
$elements_out_array[] = compose_description_element_quantitative_data($descriptionElement, $feature_block_settings);
|
|
1336
|
break;
|
|
1337
|
case 'IndividualsAssociation':
|
|
1338
|
$elements_out_array[] = compose_description_element_individuals_association($descriptionElement, $feature_block_settings);
|
|
1339
|
break;
|
|
1340
|
case 'TaxonInteraction':
|
|
1341
|
$elements_out_array[] = compose_description_element_taxon_interaction($descriptionElement, $feature_block_settings);
|
|
1342
|
break;
|
|
1343
|
case 'Uses':
|
|
1344
|
/* IGNORE Uses classes, these are handled completely in theme_cdm_UseDescription */
|
|
1345
|
break;
|
|
1346
|
default:
|
|
1347
|
$feature_block_has_content = true;
|
|
1348
|
$elements_out_array[] = markup_to_render_array('<li>No method for rendering unknown description class: ' . $descriptionElement->class . '</li>');
|
|
1349
|
}
|
|
1350
|
$elements_out_array_last_item = $elements_out_array[count($elements_out_array) - 1];
|
|
1351
|
// considering not empty as long as the last item added is a render array
|
|
1352
|
$feature_block_has_content = $feature_block_has_content || !empty($elements_out_array_last_item['#type']);
|
|
1353
|
}
|
|
1354
|
|
|
1355
|
// If feature = CITATION sort the list of sources.
|
|
1356
|
// This is ONLY for FLORA MALESIANA and FLORE d'AFRIQUE CENTRALE.
|
|
1357
|
if (isset($descriptionElement) && $descriptionElement->feature->uuid == UUID_CITATION) {
|
|
1358
|
sort($elements_out_array);
|
|
1359
|
}
|
|
1360
|
}
|
|
1361
|
|
|
1362
|
if($feature_block_has_content){
|
|
1363
|
$render_array = compose_feature_block_elements(
|
|
1364
|
$elements_out_array, $feature
|
|
1365
|
);
|
|
1366
|
}
|
|
1367
|
|
|
1368
|
RenderHints::popFromRenderStack();
|
|
1369
|
return $render_array;
|
|
1370
|
}
|
|
1371
|
|
|
1372
|
/**
|
|
1373
|
* Composes block of common names for the given DescriptionElements $elements which must be of the feature CommonName
|
|
1374
|
*
|
|
1375
|
* @parameter $elements
|
|
1376
|
* an array of CDM DescriptionElements either of type CommonName or TextData
|
|
1377
|
* @parameter $feature
|
|
1378
|
* the common feature of all $elements, must be CommonName
|
|
1379
|
*
|
|
1380
|
* @return
|
|
1381
|
* A drupal render array
|
|
1382
|
*
|
|
1383
|
* @ingroup compose
|
|
1384
|
*/
|
|
1385
|
function compose_feature_block_items_feature_common_name($elements, $feature, $weight = FALSE) {
|
|
1386
|
|
|
1387
|
$common_name_out = '';
|
|
1388
|
$common_name_feature_elements = array();
|
|
1389
|
$textData_commonNames = array();
|
|
1390
|
|
|
1391
|
$footnote_key_suggestion = 'common-names-feature-block';
|
|
1392
|
|
|
1393
|
$feature_block_settings = get_feature_block_settings(UUID_COMMON_NAME);
|
|
1394
|
|
|
1395
|
$element_tag_name = cdm_feature_block_element_tag_name($feature_block_settings);
|
|
1396
|
|
|
1397
|
if (is_array($elements)) {
|
|
1398
|
foreach ($elements as $element) {
|
|
1399
|
|
|
1400
|
if ($element->class == 'CommonTaxonName') {
|
|
1401
|
|
|
1402
|
// common name without a language or area, should not happen but is possible
|
|
1403
|
$language_area_key = '';
|
|
1404
|
if (isset($element->language->representation_L10n)) {
|
|
1405
|
$language_area_key .= '<b>' . $element->language->representation_L10n . '</b>';
|
|
1406
|
}
|
|
1407
|
if(isset($element->area->titleCache) && strlen($element->area->titleCache) > 0){
|
|
1408
|
$language_area_key .= ($language_area_key ? ' ' : '') . '(' . $element->area->titleCache . ')';
|
|
1409
|
}
|
|
1410
|
|
|
1411
|
if(isset($common_names[$language_area_key][$element->name])) {
|
|
1412
|
// same name already exists for language and area combination, se we merge the description elements
|
|
1413
|
cdm_merge_description_elements($common_names[$language_area_key][$element->name], $element);
|
|
1414
|
} else{
|
|
1415
|
// otherwise add as new entry
|
|
1416
|
$common_names[$language_area_key][$element->name] = $element;
|
|
1417
|
}
|
|
1418
|
|
|
1419
|
}
|
|
1420
|
elseif ($element->class == 'TextData') {
|
|
1421
|
$textData_commonNames[] = $element;
|
|
1422
|
}
|
|
1423
|
}
|
|
1424
|
}
|
|
1425
|
// Handling common names.
|
|
1426
|
if (isset($common_names) && count($common_names) > 0) {
|
|
1427
|
// Sorting the array based on the key (language, + area if set).
|
|
1428
|
// Comment @WA there are common names without a language, so this sorting
|
|
1429
|
// can give strange results.
|
|
1430
|
ksort($common_names);
|
|
1431
|
|
|
1432
|
// loop over set of elements per language area
|
|
1433
|
foreach ($common_names as $language_area_key => $elements) {
|
|
1434
|
ksort($elements); // sort names alphabetically
|
|
1435
|
$per_language_area_out = array();
|
|
1436
|
// loop over set of individual elements
|
|
1437
|
foreach ($elements as $element) {
|
|
1438
|
if ($element->name) {
|
|
1439
|
$annotations_and_sources = handle_annotations_and_sources($element, $feature_block_settings, $element->name, $footnote_key_suggestion);
|
|
1440
|
$source_references_markup = '';
|
|
1441
|
if(!empty($annotations_and_sources['source_references'])){
|
|
1442
|
$source_references_markup = ' ' . join(', ', $annotations_and_sources['source_references']);
|
|
1443
|
}
|
|
1444
|
$per_language_area_out[] = '<' . $element_tag_name. ' class="' . html_class_attribute_ref($element) . '">'
|
|
1445
|
. $element->name . $source_references_markup . $annotations_and_sources['foot_note_keys'] . '</' . $element_tag_name. '>';
|
|
1446
|
}
|
|
1447
|
} // End of loop over set of individual elements
|
|
1448
|
$common_name_feature_elements[] = ($language_area_key ? $language_area_key . ': ' : '' ) . join(', ', $per_language_area_out);
|
|
1449
|
} // End of loop over set of elements per language area
|
|
1450
|
|
|
1451
|
|
|
1452
|
$common_name_feature_elements_render_array = compose_feature_block_elements(
|
|
1453
|
$common_name_feature_elements, $feature, '; ', FALSE
|
|
1454
|
);
|
|
1455
|
$common_name_out .= drupal_render($common_name_feature_elements_render_array); // FIXME should this be a render array instead?
|
|
1456
|
|
|
1457
|
}
|
|
1458
|
|
|
1459
|
// Handling commons names as text data.
|
|
1460
|
$text_data_out = array();
|
|
1461
|
|
|
1462
|
foreach ($textData_commonNames as $text_data_element) {
|
|
1463
|
/* footnotes are not handled correctly in compose_description_element_text_data,
|
|
1464
|
need to set 'common-names-feature-block' as $footnote_key_suggestion */
|
|
1465
|
RenderHints::setFootnoteListKey($footnote_key_suggestion);
|
|
1466
|
$text_data_render_array = compose_description_element_text_data($text_data_element, $text_data_element->feature->uuid, $feature_block_settings);
|
|
1467
|
$text_data_out[] = drupal_render($text_data_render_array);
|
|
1468
|
}
|
|
1469
|
|
|
1470
|
$common_name_out_text_data = compose_feature_block_elements(
|
|
1471
|
$text_data_out, $feature
|
|
1472
|
);
|
|
1473
|
|
|
1474
|
$footnotes = theme('cdm_footnotes', array('footnoteListKey' => 'BIBLIOGRAPHY-' . $footnote_key_suggestion));
|
|
1475
|
$footnotes .= theme('cdm_footnotes', array('footnoteListKey' => $footnote_key_suggestion)); // FIXME is this needed at all?
|
|
1476
|
$footnotes .= theme('cdm_annotation_footnotes', array('footnoteListKey' => $footnote_key_suggestion));
|
|
1477
|
|
|
1478
|
return markup_to_render_array( // FIXME markup_to_render_array should no longer be needed
|
|
1479
|
'<div class="common_names_as_common_names">' . $common_name_out . '</div>'
|
|
1480
|
.'<div class="common_names_as_text_data">' . drupal_render($common_name_out_text_data) . '</div>'
|
|
1481
|
.$footnotes,
|
|
1482
|
$weight
|
|
1483
|
);
|
|
1484
|
}
|
|
1485
|
|
|
1486
|
/**
|
|
1487
|
* Composes the render array for a CDM Distribution description element
|
|
1488
|
*
|
|
1489
|
* @param array $description_elements
|
|
1490
|
* Array of CDM Distribution instances
|
|
1491
|
* @param $enclosingTag
|
|
1492
|
* The html tag to be use for the enclosing element
|
|
1493
|
*
|
|
1494
|
* @return array
|
|
1495
|
* A Drupal render array
|
|
1496
|
*
|
|
1497
|
* @ingroup compose
|
|
1498
|
*/
|
|
1499
|
function compose_description_elements_distribution($description_elements){
|
|
1500
|
|
|
1501
|
$out = '';
|
|
1502
|
RenderHints::pushToRenderStack('descriptionElementDistribution');
|
|
1503
|
RenderHints::setFootnoteListKey(UUID_DISTRIBUTION);
|
|
1504
|
|
|
1505
|
$feature_block_settings = get_feature_block_settings(UUID_DISTRIBUTION);
|
|
1506
|
$enclosingTag = cdm_feature_block_element_tag_name($feature_block_settings);
|
|
1507
|
|
|
1508
|
foreach ($description_elements as $description_element) {
|
|
1509
|
$annotations_and_sources = handle_annotations_and_sources(
|
|
1510
|
$description_element,
|
|
1511
|
$feature_block_settings,
|
|
1512
|
$description_element->area->representation_L10n,
|
|
1513
|
UUID_DISTRIBUTION
|
|
1514
|
);
|
|
1515
|
|
|
1516
|
|
|
1517
|
list($status_label, $status_markup) = distribution_status_label_and_markup($description_element);
|
|
1518
|
|
|
1519
|
$out .= '<' . $enclosingTag . ' class="descriptionElement descriptionElement-' . $description_element->uuid
|
|
1520
|
. ' " title="' . $status_label. '">'
|
|
1521
|
. $description_element->area->representation_L10n
|
|
1522
|
. $status_markup;
|
|
1523
|
if(!empty($annotations_and_sources['source_references'])){
|
|
1524
|
$out .= ' ' . join(' ', $annotations_and_sources['source_references'] );
|
|
1525
|
}
|
|
1526
|
$out .= $annotations_and_sources['foot_note_keys'] . ' </' . $enclosingTag . '>';
|
|
1527
|
}
|
|
1528
|
|
|
1529
|
RenderHints::popFromRenderStack();
|
|
1530
|
return markup_to_render_array($out);
|
|
1531
|
}
|
|
1532
|
|
|
1533
|
/**
|
|
1534
|
* @param $descriptionElement
|
|
1535
|
* @return array
|
|
1536
|
*/
|
|
1537
|
function distribution_status_label_and_markup($descriptionElement) {
|
|
1538
|
$status_markup = '';
|
|
1539
|
$status_label = '';
|
|
1540
|
|
|
1541
|
if (isset($descriptionElement->status)) {
|
|
1542
|
$status_label = $descriptionElement->status->representation_L10n;
|
|
1543
|
$status_markup = '<span class="distributionStatus distributionStatus-' . $descriptionElement->status->idInVocabulary . '"> '
|
|
1544
|
. $status_label . ' </span>';
|
|
1545
|
|
|
1546
|
};
|
|
1547
|
return array($status_label, $status_markup);
|
|
1548
|
}
|
|
1549
|
|
|
1550
|
|
|
1551
|
/**
|
|
1552
|
* Provides the merged feature tree for a taxon profile page.
|
|
1553
|
*
|
|
1554
|
* The merging of the profile feature tree is actully done in
|
|
1555
|
* _mergeFeatureTreeDescriptions(). See this method for details
|
|
1556
|
* on the structure of the merged tree.
|
|
1557
|
*
|
|
1558
|
* This method provides t hook which can be used to modify the
|
|
1559
|
* merged feature tree after it has been created, see
|
|
1560
|
* hook_merged_taxon_feature_tree_alter()
|
|
1561
|
*
|
|
1562
|
* @param $taxon
|
|
1563
|
* A CDM Taxon instance
|
|
1564
|
*
|
|
1565
|
* @return object
|
|
1566
|
* The merged feature tree
|
|
1567
|
*
|
|
1568
|
*/
|
|
1569
|
function merged_taxon_feature_tree($taxon) {
|
|
1570
|
|
|
1571
|
// 1. fetch descriptions_by_featuretree but exclude the distribution feature
|
|
1572
|
$merged_tree = cdm_ws_descriptions_by_featuretree(get_profile_feature_tree(), $taxon->uuid, array(UUID_DISTRIBUTION));
|
|
1573
|
|
|
1574
|
|
|
1575
|
// 2. find the distribution feature node
|
|
1576
|
$distribution_node =& cdm_feature_tree_find_node($merged_tree->root->childNodes, UUID_DISTRIBUTION);
|
|
1577
|
|
|
1578
|
if ($distribution_node) {
|
|
1579
|
// 3. get the distributionInfoDTO
|
|
1580
|
$query_parameters = cdm_distribution_filter_query();
|
|
1581
|
$query_parameters['part'] = array('mapUriParams');
|
|
1582
|
if(variable_get(DISTRIBUTION_CONDENSED)){
|
|
1583
|
$query_parameters['part'][] = 'condensedDistribution';
|
|
1584
|
}
|
|
1585
|
if (variable_get(DISTRIBUTION_ORDER_MODE, DISTRIBUTION_ORDER_MODE_DEFAULT) == 'TREE') {
|
|
1586
|
$query_parameters['part'][] = 'tree';
|
|
1587
|
}
|
|
1588
|
else {
|
|
1589
|
$query_parameters['part'][] = 'elements';
|
|
1590
|
}
|
|
1591
|
$query_parameters['omitLevels'] = array();
|
|
1592
|
foreach(variable_get(DISTRIBUTION_TREE_OMIT_LEVELS, array()) as $uuid){
|
|
1593
|
if(is_uuid($uuid)){
|
|
1594
|
$query_parameters['omitLevels'][] = $uuid;
|
|
1595
|
}
|
|
1596
|
}
|
|
1597
|
$customStatusColorsJson = variable_get(DISTRIBUTION_STATUS_COLORS, NULL);
|
|
1598
|
if ($customStatusColorsJson) {
|
|
1599
|
$query_parameters['statusColors'] = $customStatusColorsJson;
|
|
1600
|
}
|
|
1601
|
|
|
1602
|
$distribution_info_dto = cdm_ws_get(CDM_WS_PORTAL_DESCRIPTION_DISTRIBUTION_INFO_FOR, $taxon->uuid, queryString($query_parameters));
|
|
1603
|
// 4. get distribution TextData is there are any
|
|
1604
|
$distribution_text_data = cdm_ws_fetch_all(CDM_WS_DESCRIPTIONELEMENT_BY_TAXON,
|
|
1605
|
array(
|
|
1606
|
'taxon' => $taxon->uuid,
|
|
1607
|
'type' => 'TextData',
|
|
1608
|
'features' => UUID_DISTRIBUTION
|
|
1609
|
)
|
|
1610
|
);
|
|
1611
|
|
|
1612
|
// 5. put all distribution data into the distribution feature node
|
|
1613
|
if ($distribution_text_data //if text data exists
|
|
1614
|
|| ($distribution_info_dto && isset($distribution_info_dto->tree) && $distribution_info_dto->tree->rootElement->numberOfChildren > 0) // OR if tree element has distribution elements
|
|
1615
|
|| ($distribution_info_dto && !empty($distribution_info_dto->elements))
|
|
1616
|
) { // OR if DTO has distribution elements
|
|
1617
|
$distribution_node->descriptionElements = array('#type' => 'DTO');
|
|
1618
|
if ($distribution_text_data) {
|
|
1619
|
$distribution_node->descriptionElements['TextData'] = $distribution_text_data;
|
|
1620
|
}
|
|
1621
|
if ($distribution_info_dto) {
|
|
1622
|
$distribution_node->descriptionElements['DistributionInfoDTO'] = $distribution_info_dto;
|
|
1623
|
}
|
|
1624
|
}
|
|
1625
|
}
|
|
1626
|
|
|
1627
|
// allows modifying the merged tree via a the hook_cdm_feature_node_block_content_alter
|
|
1628
|
drupal_alter('merged_taxon_feature_tree', $taxon, $merged_tree);
|
|
1629
|
|
|
1630
|
return $merged_tree;
|
|
1631
|
}
|
|
1632
|
|
|
1633
|
|
|
1634
|
function compose_distribution_hierarchy($distribution_tree, $feature_block_settings){
|
|
1635
|
|
|
1636
|
static $hierarchy_style;
|
|
1637
|
// TODO expose $hierarchy_style to administration of provide a hook
|
|
1638
|
if( !isset($hierarchy_style)){
|
|
1639
|
$hierarchy_style = array(
|
|
1640
|
// level 2
|
|
1641
|
array(
|
|
1642
|
'label_suffix' => '',
|
|
1643
|
'element_glue' => ', ',
|
|
1644
|
'element_set_pre' => '(',
|
|
1645
|
'element_set_post' => ')'
|
|
1646
|
),
|
|
1647
|
// level 1
|
|
1648
|
array(
|
|
1649
|
'label_suffix' => '',
|
|
1650
|
'element_glue' => '; ',
|
|
1651
|
'element_set_pre' => '',
|
|
1652
|
'element_set_post' => ''
|
|
1653
|
),
|
|
1654
|
// level 0
|
|
1655
|
array(
|
|
1656
|
'label_suffix' => ':',
|
|
1657
|
'element_glue' => ' ',
|
|
1658
|
'element_set_pre' => '',
|
|
1659
|
'element_set_post' => ''
|
|
1660
|
),
|
|
1661
|
);
|
|
1662
|
}
|
|
1663
|
|
|
1664
|
$render_array = array();
|
|
1665
|
|
|
1666
|
RenderHints::pushToRenderStack('descriptionElementDistribution');
|
|
1667
|
RenderHints::setFootnoteListKey(UUID_DISTRIBUTION);
|
|
1668
|
|
|
1669
|
// Returning NULL if there are no description elements.
|
|
1670
|
if ($distribution_tree == null) {
|
|
1671
|
return $render_array;
|
|
1672
|
}
|
|
1673
|
// for now we are not using a render array internally to avoid performance problems
|
|
1674
|
$markup = '';
|
|
1675
|
if (isset($distribution_tree->rootElement->children)) {
|
|
1676
|
$tree_nodes = $distribution_tree->rootElement->children;
|
|
1677
|
_compose_distribution_hierarchy($tree_nodes, $feature_block_settings, $markup, $hierarchy_style);
|
|
1678
|
}
|
|
1679
|
|
|
1680
|
$render_array['distribution_hierarchy'] = markup_to_render_array(
|
|
1681
|
$markup,
|
|
1682
|
0,
|
|
1683
|
'<div id="distribution_hierarchy" class="distribution_hierarchy">',
|
|
1684
|
'</div>'
|
|
1685
|
);
|
|
1686
|
|
|
1687
|
return $render_array;
|
|
1688
|
}
|
|
1689
|
|
|
1690
|
/**
|
|
1691
|
* this function should produce markup as the compose_description_elements_distribution()
|
|
1692
|
* function.
|
|
1693
|
*
|
|
1694
|
* @see compose_description_elements_distribution()
|
|
1695
|
*
|
|
1696
|
* @param $distribution_tree
|
|
1697
|
* @param $feature_block_settings
|
|
1698
|
* @param $tree_nodes
|
|
1699
|
* @param $markup
|
|
1700
|
* @param $hierarchy_style
|
|
1701
|
*/
|
|
1702
|
function _compose_distribution_hierarchy($tree_nodes, $feature_block_settings, &$markup, $hierarchy_style, $level_index = -1){
|
|
1703
|
|
|
1704
|
$level_index++;
|
|
1705
|
static $enclosingTag = "span";
|
|
1706
|
|
|
1707
|
$level_style = array_pop($hierarchy_style);
|
|
1708
|
if(count($hierarchy_style) == 0){
|
|
1709
|
// lowest defined level style will be reused for all following levels
|
|
1710
|
$hierarchy_style[] = $level_style;
|
|
1711
|
}
|
|
1712
|
|
|
1713
|
$node_index = -1;
|
|
1714
|
$per_node_markup = array();
|
|
1715
|
foreach ($tree_nodes as $node){
|
|
1716
|
|
|
1717
|
$per_node_markup[++$node_index] = '';
|
|
1718
|
|
|
1719
|
$label = $node->nodeId->representation_L10n;
|
|
1720
|
|
|
1721
|
$distributions = $node->data;
|
|
1722
|
$distribution_uuids = array();
|
|
1723
|
$distribution_aggregate = NULL;
|
|
1724
|
foreach($distributions as $distribution){
|
|
1725
|
|
|
1726
|
$distribution_uuids[] = $distribution->uuid;
|
|
1727
|
|
|
1728
|
// if there is more than one distribution we aggregate the sources and
|
|
1729
|
// annotations into a synthetic distribution so that the footnote keys
|
|
1730
|
// can be rendered consistently
|
|
1731
|
if(!$distribution_aggregate) {
|
|
1732
|
$distribution_aggregate = $distribution;
|
|
1733
|
if(!isset($distribution_aggregate->sources[0])){
|
|
1734
|
$distribution_aggregate->sources = array();
|
|
1735
|
}
|
|
1736
|
if(!isset($distribution_aggregate->annotations[0])){
|
|
1737
|
$distribution_aggregate->annotations = array();
|
|
1738
|
}
|
|
1739
|
} else {
|
|
1740
|
if(isset($distribution->sources[0])) {
|
|
1741
|
$distribution_aggregate->sources = array_merge($distribution_aggregate->sources,
|
|
1742
|
$distribution->sources);
|
|
1743
|
}
|
|
1744
|
if(isset($distribution->annotations[0])) {
|
|
1745
|
$distribution_aggregate->annotations = array_merge($distribution_aggregate->annotations,
|
|
1746
|
$distribution->annotations);
|
|
1747
|
}
|
|
1748
|
}
|
|
1749
|
}
|
|
1750
|
|
|
1751
|
$status_label= '';
|
|
1752
|
$status_markup = '';
|
|
1753
|
$annotations_and_sources = null;
|
|
1754
|
if($distribution_aggregate) {
|
|
1755
|
$annotations_and_sources = handle_annotations_and_sources(
|
|
1756
|
$distribution_aggregate,
|
|
1757
|
$feature_block_settings,
|
|
1758
|
$label,
|
|
1759
|
UUID_DISTRIBUTION
|
|
1760
|
);
|
|
1761
|
|
|
1762
|
list($status_label, $status_markup) = distribution_status_label_and_markup($distribution);
|
|
1763
|
}
|
|
1764
|
|
|
1765
|
$per_node_markup[$node_index] .= '<' . $enclosingTag . ' class="descriptionElement'
|
|
1766
|
. join(' descriptionElement-', $distribution_uuids)
|
|
1767
|
. ' level_index_' . $level_index
|
|
1768
|
. ' " title="' . $status_label . '">'
|
|
1769
|
. '<span class="area_label">' . $label
|
|
1770
|
. $level_style['label_suffix'] . ' </span>'
|
|
1771
|
. $status_markup
|
|
1772
|
;
|
|
1773
|
|
|
1774
|
if(isset($annotations_and_sources)){
|
|
1775
|
if(!empty($annotations_and_sources['source_references'])){
|
|
1776
|
$per_node_markup[$node_index] .= ' ' . join(', ' , $annotations_and_sources['source_references']);
|
|
1777
|
}
|
|
1778
|
if($annotations_and_sources['foot_note_keys']) {
|
|
1779
|
$per_node_markup[$node_index] .= $annotations_and_sources['foot_note_keys'];
|
|
1780
|
}
|
|
1781
|
}
|
|
1782
|
|
|
1783
|
if(isset($node->children[0])){
|
|
1784
|
_compose_distribution_hierarchy(
|
|
1785
|
$node->children,
|
|
1786
|
$feature_block_settings,
|
|
1787
|
$per_node_markup[$node_index],
|
|
1788
|
$hierarchy_style,
|
|
1789
|
$level_index
|
|
1790
|
);
|
|
1791
|
}
|
|
1792
|
|
|
1793
|
$per_node_markup[$node_index] .= '</' . $enclosingTag . '>';
|
|
1794
|
}
|
|
1795
|
$markup .= $level_style['element_set_pre'] . join( $level_style['element_glue'], $per_node_markup) . $level_style['element_set_post'];
|
|
1796
|
}
|
|
1797
|
|
|
1798
|
|