Revision dba9669c
Added by Andreas Kohlbecker over 3 years ago
| modules/cdm_dataportal/includes/occurrences.inc | ||
|---|---|---|
| 1771 | 1771 |
return order_specimens_or_observations_by_date_and_type($fieldUnitDTOs); |
| 1772 | 1772 |
} |
| 1773 | 1773 |
|
| 1774 |
/** |
|
| 1775 |
* @param $specimen |
|
| 1776 |
* |
|
| 1777 |
* @return array |
|
| 1778 |
*/ |
|
| 1779 |
function specimen_id_and_collection_for($specimen) {
|
|
| 1780 |
$specimenID = ''; |
|
| 1781 |
$collection = NULL; |
|
| 1782 |
if (!($specimen->class == 'FieldUnit')) {
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|
| 1783 |
if ($specimen->collection) {
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|
| 1784 |
if ($specimen->collection->code) {
|
|
| 1785 |
$collection = $specimen->collection->code; |
|
| 1786 |
} |
|
| 1787 |
elseif ($specimen->collection->name) {
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|
| 1788 |
$collection = $specimen->collection->name; |
|
| 1789 |
} |
|
| 1790 |
} |
|
| 1791 |
if ($specimen->accessionNumber) {
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|
| 1792 |
$specimenID = $specimen->accessionNumber; |
|
| 1793 |
} |
|
| 1794 |
elseif ($specimen->barcode) {
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|
| 1795 |
$specimenID = $specimen->barcode; |
|
| 1796 |
} |
|
| 1797 |
elseif ($specimen->catalogNumber) {
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|
| 1798 |
$specimenID = $specimen->catalogNumber; |
|
| 1799 |
} |
|
| 1800 |
elseif ($specimen->titleCache) {
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|
| 1801 |
$specimenID = $specimen->titleCache; |
|
| 1802 |
} |
|
| 1803 |
if (!isset($specimenID) and !isset($collection)) {
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|
| 1804 |
$specimenID = $specimen->uuid; |
|
| 1805 |
} |
|
| 1806 |
} |
|
| 1807 |
else {
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|
| 1808 |
if ($specimen->titleCache) {
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|
| 1809 |
$specimenID = $specimen->titleCache; |
|
| 1810 |
} |
|
| 1811 |
if (!isset($specimenID) and !isset($collection)) {
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|
| 1812 |
$specimenID = $specimen->uuid; |
|
| 1813 |
} |
|
| 1814 |
} |
|
| 1815 |
return [$specimenID, $collection]; |
|
| 1816 |
} |
|
| 1817 |
|
|
| 1818 |
/** |
|
| 1819 |
* Renders a cdm collection entity as html markup. |
|
| 1820 |
* |
|
| 1821 |
* institute and super-collections |
|
| 1822 |
* |
|
| 1823 |
* @param $collection |
|
| 1824 |
* The CDM Collection entity |
|
| 1825 |
* @param bool $do_link |
|
| 1826 |
* Append a link to the collection page as clickable icon (default = true). |
|
| 1827 |
* |
|
| 1828 |
* @return string |
|
| 1829 |
* The markup for the collection, |
|
| 1830 |
*/ |
|
| 1831 |
function render_collection($collection, $do_link = false /* to be made true, see #9250 */ ){
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|
| 1832 |
if(!is_object($collection)){
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|
| 1833 |
return ''; |
|
| 1834 |
} |
|
| 1835 |
$collection_str_list = []; |
|
| 1836 |
$super_collection = $collection; |
|
| 1837 |
while($super_collection){
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|
| 1838 |
$collection_str = $super_collection->titleCache; |
|
| 1839 |
if(is_object($super_collection->institute) && $super_collection->institute->titleCache){
|
|
| 1840 |
$collection_str .= ' at ' . $super_collection->institute->titleCache; |
|
| 1841 |
} |
|
| 1842 |
$collection_str_list[] = $collection_str; |
|
| 1843 |
if(isset($super_collection->superCollection)){
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|
| 1844 |
$super_collection = $super_collection->superCollection; |
|
| 1845 |
} else {
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|
| 1846 |
$super_collection = null; |
|
| 1847 |
} |
|
| 1848 |
} |
|
| 1849 |
$markup = join(' in ', $collection_str_list);
|
|
| 1850 |
if($markup){
|
|
| 1851 |
if($do_link){
|
|
| 1852 |
$markup .= ' ' . cdm_internal_link(path_to_collection($collection->uuid)); |
|
| 1853 |
} |
|
| 1854 |
$markup = '<span class="' . html_class_attribute_ref($collection) . '">' . $markup . '</span>'; |
|
| 1855 |
} |
|
| 1856 |
return $markup; |
|
| 1857 |
} |
|
| 1858 |
|
|
| modules/cdm_dataportal/includes/pages.inc | ||
|---|---|---|
| 1468 | 1468 |
return '<span class="' . $occurrence_dto->class . '">' . $out . '</span>'; |
| 1469 | 1469 |
} |
| 1470 | 1470 |
|
| 1471 |
/** |
|
| 1472 |
* @param $specimen |
|
| 1473 |
* |
|
| 1474 |
* @return array |
|
| 1475 |
*/ |
|
| 1476 |
function specimen_id_and_collection_for($specimen) {
|
|
| 1477 |
$specimenID = ''; |
|
| 1478 |
$collection = NULL; |
|
| 1479 |
if (!($specimen->class == 'FieldUnit')) {
|
|
| 1480 |
if ($specimen->collection) {
|
|
| 1481 |
if ($specimen->collection->code) {
|
|
| 1482 |
$collection = $specimen->collection->code; |
|
| 1483 |
} |
|
| 1484 |
elseif ($specimen->collection->name) {
|
|
| 1485 |
$collection = $specimen->collection->name; |
|
| 1486 |
} |
|
| 1487 |
} |
|
| 1488 |
if ($specimen->accessionNumber) {
|
|
| 1489 |
$specimenID = $specimen->accessionNumber; |
|
| 1490 |
} |
|
| 1491 |
elseif ($specimen->barcode) {
|
|
| 1492 |
$specimenID = $specimen->barcode; |
|
| 1493 |
} |
|
| 1494 |
elseif ($specimen->catalogNumber) {
|
|
| 1495 |
$specimenID = $specimen->catalogNumber; |
|
| 1496 |
} |
|
| 1497 |
elseif ($specimen->titleCache) {
|
|
| 1498 |
$specimenID = $specimen->titleCache; |
|
| 1499 |
} |
|
| 1500 |
if (!isset($specimenID) and !isset($collection)) {
|
|
| 1501 |
$specimenID = $specimen->uuid; |
|
| 1502 |
} |
|
| 1503 |
} |
|
| 1504 |
else {
|
|
| 1505 |
if ($specimen->titleCache) {
|
|
| 1506 |
$specimenID = $specimen->titleCache; |
|
| 1507 |
} |
|
| 1508 |
if (!isset($specimenID) and !isset($collection)) {
|
|
| 1509 |
$specimenID = $specimen->uuid; |
|
| 1510 |
} |
|
| 1511 |
} |
|
| 1512 |
return [$specimenID, $collection]; |
|
| 1513 |
} |
|
| 1514 |
|
|
| 1515 |
/** |
|
| 1516 |
* Renders a cdm collection entity as html markup. |
|
| 1517 |
* |
|
| 1518 |
* institute and super-collections |
|
| 1519 |
* |
|
| 1520 |
* @param $collection |
|
| 1521 |
* The CDM Collection entity |
|
| 1522 |
* @param bool $do_link |
|
| 1523 |
* Append a link to the collection page as clickable icon (default = true). |
|
| 1524 |
* |
|
| 1525 |
* @return string |
|
| 1526 |
* The markup for the collection, |
|
| 1527 |
*/ |
|
| 1528 |
function render_collection($collection, $do_link = false /* to be made true, see #9250 */ ){
|
|
| 1529 |
if(!is_object($collection)){
|
|
| 1530 |
return ''; |
|
| 1531 |
} |
|
| 1532 |
$collection_str_list = []; |
|
| 1533 |
$super_collection = $collection; |
|
| 1534 |
while($super_collection){
|
|
| 1535 |
$collection_str = $super_collection->titleCache; |
|
| 1536 |
if(is_object($super_collection->institute) && $super_collection->institute->titleCache){
|
|
| 1537 |
$collection_str .= ' at ' . $super_collection->institute->titleCache; |
|
| 1538 |
} |
|
| 1539 |
$collection_str_list[] = $collection_str; |
|
| 1540 |
if(isset($super_collection->superCollection)){
|
|
| 1541 |
$super_collection = $super_collection->superCollection; |
|
| 1542 |
} else {
|
|
| 1543 |
$super_collection = null; |
|
| 1544 |
} |
|
| 1545 |
} |
|
| 1546 |
$markup = join(' in ', $collection_str_list);
|
|
| 1547 |
if($markup){
|
|
| 1548 |
if($do_link){
|
|
| 1549 |
$markup .= ' ' . cdm_internal_link(path_to_collection($collection->uuid)); |
|
| 1550 |
} |
|
| 1551 |
$markup = '<span class="' . html_class_attribute_ref($collection) . '">' . $markup . '</span>'; |
|
| 1552 |
} |
|
| 1553 |
return $markup; |
|
| 1554 |
} |
|
| 1555 |
|
|
Also available in: Unified diff
ref #9249, ref #9250 moving connection and specimen render function to occurrences.inc