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<?php
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// $Id$
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/*
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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function tagNameParts($name, $numOfNameTokens){
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$out = '<span class="name">';
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$token = strtok($name, " \n\t");
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$i = 0;
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$noSpace = true;
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while($token != false){
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if($i == $numOfNameTokens){
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$out .= '</span> <span class="authors">';
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$noSpace = true;
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}
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$out .= ($noSpace?'':' ').$token;
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$noSpace = false;
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$token = strtok(" \n\t");
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$i++;
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}
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return $out.'</span>';
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}
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/**
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* Renders the full name string (complete scientific name including the author team)
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*
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* @param NameTO $nameTO the taxon name
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*/
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function theme_cdm_name($nameTO, $displayNomRef = true){
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//TODO: - take the different subtypes of eu.etaxonomy.cdm.model.name.TaxonNameBase into account?
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$class = 'name'; //($nameTO->secUuid ? 'taxon' : 'taxonname');
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if($nameTO){
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if(!$nameTO->taggedName || !count($nameTO->taggedName)){
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$out .= '<span class="'.$class.'">'.$nameTO->fullname.'</span>';
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} else {
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$out .= '<span class="'.$class.'">'.cdm_taggedtext2html($nameTO->taggedName).'</span>';
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}
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} else {
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$out .= '<span class="error">Invalid NameTO</span>';
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}
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if($displayNomRef && $nameTO->nomenclaturalReference->citation){
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$out .= (str_beginsWith($nameTO->nomenclaturalReference->citation, 'in') ? ' ':', ');
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$out .= theme('cdm_nomenclaturalReferenceSTO', $nameTO->nomenclaturalReference);
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}
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if($nameTO->status){
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$out .= ', '.cdm_dataportal_t($nameTO->status);
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}
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return $out;
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}
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/**
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* Renders the given TaxonTO. The $enclosingTag (if not set false)
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* will get the following class attributes:
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* - name
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* - accepted (only if $ptaxon is an accepted name)
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*
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* @param TaxonTO $taxon
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* @param boolean $displayNomRef whether to display the nomenclatural reference
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* @param boolean $noSecundum defaults to false. If set to true the secundum part is omitted.
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* @param string $enclosingTag defaults to span.
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* @return string of XHTML
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*
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* usage: taxon_detail, theme_ptname_link
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*/
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function theme_cdm_taxon($taxonTO, $displayNomRef = true, $noSecundum = true, $enclosingTag = 'span'){
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$refSecundum = false;
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if(!$noSecundum){
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$ref_sec = cdm_ws_get(CDM_WS_REFERENCE ,$taxonTO->secUuid);
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if($ref_sec){
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$refSecundum = str_trunk($ref_sec->fullcitation, 40, '...');
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}
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}
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$out = theme('cdm_name', $taxonTO->name, $displayNomRef);
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$out .=($refSecundum ? ' <span class="secundum">sec. '.$refSecundum.'</span>': '');
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//TODO: .$ptaxon->namePhrase;
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if($enclosingTag){
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$out = '<'.$enclosingTag.' class="taxon'.($taxonTO->isAccepted === true ? ' accepted':'').'">'.$out.'</'.$enclosingTag.'>';
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}
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return $out;
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}
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/**
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* Renders a link to the taxon detail page for the given $taxon
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*
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* @param TaxonTO $taxon
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*/
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function theme_cdm_taxon_link($taxonTO, $fragment = NULL, $showNomRef = false){
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if($fragment){
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$fragment = '#'.$fragment;
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}
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if(!$taxon->isAccepted) {
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$out = 'ERROR: theme_cdm_taxon_link() - taxon is not accepted';
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}
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$name_html = theme('cdm_taxon', $taxonTO, false, true, '');
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$out = l($name_html, cdm_dataportal_taxon_path($taxonTO->uuid), array('class'=>'accepted'), '', $fragment, FALSE, TRUE);
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if($showNomRef){
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$out .=' '.theme('cdm_nomRef', $taxonTO);
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}
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return $out;
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}
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function theme_cdm_related_taxon($taxonSTO, $reltype_uuid = '', $displayNomRef = true){
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$relsign = '';
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$name_prefix = '';
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$name_postfix = '';
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switch ($reltype_uuid){
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case UUID_HOMOTYPIC_SYNONYM_OF:
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$relsign = '≡';
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break;
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case UUID_MISAPPLIED_NAME_FOR:
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case UUID_INVALID_DESIGNATION_FOR:
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$relsign = '–'; // – — −
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$name_prefix = '"';
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$name_postfix = '"';
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break;
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default :
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$relsign = '=';
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}
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$out = '<span class="relation_sign">'.$relsign.'</span>'.$name_prefix.theme('cdm_taxon',$taxonSTO, $displayNomRef).$name_postfix;
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return $out;
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}
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function theme_cdm_dynabox($label, $content_url, $theme, $enclosingtag = 'li'){
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$cdm_proxy_url = url('cdm_api/proxy/'.urlencode($content_url)."/$theme");
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$out .= '<li class="dynabox"><span class="label">'.$label.'</span>';
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$out .= '<ul class="dynabox_content" title="'.$cdm_proxy_url.'"><li><img class="loading" src="'.drupal_get_path('module', 'cdm_dataportal').'/images/loading_circle_grey_16.gif" style="display:none;"></li></ul>';
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return $out;
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}
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function theme_cdm_listof_taxa($taxonSTOs){
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/cdm_dynabox.js');
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drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/cdm_dataportal.css');
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$out = '<ul class="cdm_names" style="background-image: none;">';
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$currentSecRef = _cdm_dataportal_currentSecRef_array();
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foreach($taxonSTOs as $taxon){
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if($taxon->isAccepted && $taxon->secUuid == $currentSecRef['uuid']){
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$out .= '<li>'.theme('cdm_taxon_link', $taxon).'</li>';
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} else {
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$out .= theme('cdm_dynabox', theme('cdm_name', $taxon->name), cdm_compose_url(CDM_WS_ACCEPTED_TAXON, array($taxon->uuid)), 'cdm_taxon_link');
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}
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}
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$out .= '</ul>';
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return $out;
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}
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function theme_cdm_alternative_taxa($taxonSTOs){
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$out = '<ul class="cdm_names" style="background-image: none;">';
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foreach($taxonSTOs as $taxon){
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$out .= '<li>'.theme('cdm_taxon_link', $taxon).'</li>';
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}
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$out .= '</ul>';
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return $out;
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}
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function theme_cdm_credits(){
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$secRef_array = _cdm_dataportal_currentSecRef_array();
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return '<span class="sec_reference_citation">'.$secRef_array['citation'].'</span>'
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.( $secRef_array['year'] ? ' <span class="year">'.$secRef_array['year'].'</span>' : '')
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.( $secRef_array['authorship'] ? '<div class="author">'.$secRef_array['authorship'].'</div>' : '');
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}
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function theme_cdm_fullreference($referenceTO){
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$out = $referenceTO->authorship;
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if($referenceTO->citation){
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$out .= ' '.$referenceTO->citation;
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}
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if($referenceTO->microReference){
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$out .= ' : '.$referenceTO->microReference;
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}
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if($referenceTO->year){
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$out .= '. '.$referenceTO->year;
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}
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return $out;
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}
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/**
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* Enter description here...
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*
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* @param unknown_type $referenceSTO a referenceSTO or referenceTO instance
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* @param unknown_type $cssClass
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* @param unknown_type $separator
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* @param unknown_type $enclosingTag
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* @return unknown
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*/
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function theme_cdm_nomenclaturalReferenceSTO($referenceSTO, $cssClass = '', $separator = '<br />' , $enclosingTag = 'li'){
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if(isset($referenceSTO->microReference)){
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// well it is a ReferenceTO
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$nomref_citation = theme('cdm_fullreference', $referenceSTO);
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} else {
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// it is ReferenceSTO
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$nomref_citation = $referenceSTO->citation;
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}
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$module_path = drupal_get_path('module', 'cdm_dataportal');
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drupal_add_js($module_path.'/js/jquery_lightbox/js/jlightbox.uncompressed.js');
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drupal_add_css($module_path.'/js/jquery_lightbox/css/jlightbox.css', 'module', 'screen');
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if( count($referenceSTO->mediaURI) > 0 ){
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$attributes = array('rel'=>'lightbox[protologues]');
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$out = l($nomref_citation, $referenceSTO->mediaURI[0]->value, $attributes, NULL, NULL, TRUE);
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for($i = 1; $i < count($referenceSTO->mediaURI); $i++) {
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$out .= l('', $referenceSTO->mediaURI[$i]->value, $attributes, NULL, NULL, TRUE);
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}
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} else {
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$out = $nomref_citation;
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}
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return $out;
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}
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function theme_cdm_taxon_page($taxonTO){
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$out = '';
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$out .= theme('cdm_homotypicSynonyms', $taxonTO->homotypicSynonyms, $taxonTO->typeDesignations, $taxonTO->nameTypeDesignations);
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foreach($taxonTO->heterotypicSynonymyGroups as $hs_group){
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$out .= theme('cdm_heterotypicSynonymyGroup', $hs_group);
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}
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$out .= theme('cdm_taxonRelations', $taxonTO->taxonRelations);
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return $out;
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}
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function theme_cdm_homotypicSynonyms($synonymRelationshipTOs, $specimenTypeDesignations = false, $nameTypeDesignations = false){
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$out = '';
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$out = '<ul class="homotypicSynonyms">';
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foreach($synonymRelationshipTOs as $synonym){
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$out .= '<li class="synonym">'.theme('cdm_related_taxon', $synonym->synoynm, UUID_HOMOTYPIC_SYNONYM_OF).'</li>';
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}
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if($specimenTypeDesignations){
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$out .= theme('cdm_typedesignations', $specimenTypeDesignations, $nameTypeDesignations);
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}
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$out .= '</ul>';
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return $out;
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}
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function theme_cdm_heterotypicSynonymyGroup($homotypicGroupTO){
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$out = '';
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$out = '<ul class="heterotypicSynonymyGroup">';
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$is_first_entry = true;
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foreach($homotypicGroupTO->taxa as $taxonSTO){
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if($is_first_entry){
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$is_first_entry = false;
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// is first list entry
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$out .= '<li class="firstentry synonym">'.theme('cdm_related_taxon',$taxonSTO, UUID_HETEROTYPIC_SYNONYM_OF).'</li>';
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} else {
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$out .= '<li class="synonym">'.theme('cdm_related_taxon',$taxonSTO, UUID_HOMOTYPIC_SYNONYM_OF).'</li>';
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}
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}
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if(isset($homotypicGroupTO->typeDesignations)){
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$out .= theme('cdm_typedesignations', $homotypicGroupTO->typeDesignations);
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}
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$out .= '</ul>';
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return $out;
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}
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/**
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* renders misapplied names and invalid designations.
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* Both relation types are currently treated the same!
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*
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* @param unknown_type $TaxonRelationshipTOs
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* @return unknown
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*/
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function theme_cdm_taxonRelations($TaxonRelationshipTOs){
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/cluetip/jquery.cluetip.js');
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/cluetip/jquery.dimensions.js');
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/cluetip/jquery.hoverIntent.js');
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drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/js/cluetip/jquery.cluetip.css');
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drupal_add_js ("$(document).ready(function(){
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$('.cluetip').css({color: '#0062C2'}).cluetip({
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splitTitle: '|',
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showTitle: true,
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activation: 'hover',
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arrows: true,
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dropShadow: false,
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cluetipClass: 'rounded'
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});
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});", 'inline');
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// aggregate misapplied named having the same fullname:
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$misapplied = array();
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foreach($TaxonRelationshipTOs as $taxonRelation){
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if(true || $taxonRelation->type->uuid == UUID_MISAPPLIED_NAME_FOR || $taxonRelation->type->uuid == UUID_INVALID_DESIGNATION_FOR ){
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$sensu_reference = cdm_ws_get(CDM_WS_REFERENCE ,$taxonRelation->secUuid);
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$name = $taxonRelation->name->fullname;
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if(!isset($misapplied[$name])){
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$misapplied[$name] = '<span class="misapplied">'.theme('cdm_related_taxon',$taxonRelation, UUID_MISAPPLIED_NAME_FOR, false).'</span>';
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} else {
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$misapplied[$name] .= ';';
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}
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$misapplied[$name] .= ' <span class="sensu cluetip no-print" title="|sensu '.theme('cdm_fullreference',$sensu_reference ).'|">sensu '
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.$sensu_reference->authorship.'</span>'
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.'<span class="reference only-print">sensu '.theme('cdm_fullreference',$sensu_reference ).'</span>'
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;
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}
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}
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// generate output
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$out = '<ul class="misapplied">';
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foreach($misapplied as $misapplied_name){
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$out .= '<li class="synonym">'.$misapplied_name.'</li>';
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}
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$out .= '</ul>';
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return $out;
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}
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function theme_cdm_typedesignations($specimenTypeDesignations, $nameTypeDesignations = array()){
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$out = '<ul class="typeDesignations">';
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foreach($nameTypeDesignations as $ntd){
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$out .= '<li class="nameTypeDesignation"><span class="status">'.$ntd->status->value.'</span> - '.theme('cdm_name', $ntd->typeSpecies, false);
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$out .= theme('cdm_typedesignations', $ntd->typeSpecimens);
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$out .= '</li>';
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}
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foreach($specimenTypeDesignations as $std){
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$out .= '<li class="specimenTypeDesignation">';
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$out .= '<span class="status">'.$std->status->value.'</span> - '.$std->typeSpecimen->specimenLabel;
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$out .= theme('cdm_specimen', $std->typeSpecimen);
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$out .= '</li>';
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}
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$out .= '</ul>';
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return $out;
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}
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function theme_cdm_specimen($specimen){
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// rights,
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//$specimen->specimenLabel
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//$specimen->uuid
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// ---- jQuery ThickBox:
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// bug: thickbox.js line 237 .trigger("unload") -> event is not triggered
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/thickbox.js');
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drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/js/thickbox.css');
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// ---- jQuery jqModal:
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// untested ...
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//drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/jqModal.js');
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//drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/js/jqModal.css');
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$out = '';
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if(is_array($specimen->mediaURI)){
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398
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$image_url = drupal_get_path('module', 'cdm_dataportal').'/images/external_link.gif';
|
399
|
// thickbox has problems reading the first url parameter, so a litte hack is needed here:
|
400
|
// adding a meningless patameter &tb_hack=1& ....
|
401
|
$out .= ' <a href="#TB_inline?tb_hack=1&width=300&height=330&inlineId=specimen_media_'.$specimen->uuid.'" class="thickbox">'
|
402
|
.'<img src="'.$image_url.'" title="'.t('Show media').'" /></a>';
|
403
|
|
404
|
$out .= '<div id="specimen_media_'.$specimen->uuid.'" class="tickbox_content"><table>';
|
405
|
|
406
|
$media_row = '<tr class="media_data">';
|
407
|
$meta_row = '<tr class="meta_data">';
|
408
|
|
409
|
foreach($specimen->mediaURI as $uri){
|
410
|
// get media uri conversion rules if the module is installed and activated
|
411
|
if(module_exists('cdm_mediauri')){
|
412
|
$muris = cdm_mediauri_mediaUri_conversion($uri->value);
|
413
|
}
|
414
|
if(isset($muris['preview'])){
|
415
|
|
416
|
$a_child = '<img src="'.$muris['preview']['uri'].'" '
|
417
|
.($muris['preview']['size_x'] ? 'width="'.$muris['preview']['size_x'].'"' : '')
|
418
|
.($muris['preview']['size_y'] ? 'width="'.$muris['preview']['size_y'].'"' : '')
|
419
|
.'/>';
|
420
|
} else {
|
421
|
$a_child = '<img src="'.$image_url.'" />';
|
422
|
}
|
423
|
$webapp_access = '';
|
424
|
$media_row .= '<td><a href="'.$uri->value.'" target="'.$uri->uuid.'">'.$a_child.'</a></td>';
|
425
|
$meta_row .= '<td><span class="label">'.check_plain($specimen->specimenLabel).'</span>'.$webapp_access.'</td>';
|
426
|
}
|
427
|
$out .= $media_row.'</tr>';
|
428
|
$out .= $meta_row.'</tr>';
|
429
|
|
430
|
$out .= '</div></table>';
|
431
|
}
|
432
|
return $out;
|
433
|
}
|
434
|
|
435
|
|
436
|
function theme_cdm_search_results($resultPageSTO, $path, $parameters){
|
437
|
|
438
|
drupal_set_title(t('Search Results'));
|
439
|
|
440
|
$out = '';
|
441
|
if(count($resultPageSTO->results) > 0){
|
442
|
$out = theme('cdm_listof_taxa', $resultPageSTO->results);
|
443
|
$out .= theme('cdm_pager', $resultPageSTO, $path, $parameters);
|
444
|
} else {
|
445
|
$out = '<h4 calss="error">Sorry, no matching entries found.</h4>';
|
446
|
}
|
447
|
return $out;
|
448
|
}
|
449
|
|
450
|
function theme_cdm_pager(&$resultPageSTO, $path, $parameters, $neighbors = 2){
|
451
|
$out = '';
|
452
|
|
453
|
if ($resultPageSTO->totalPageCount > 1) {
|
454
|
|
455
|
$viewportsize = $neighbors * 2 + 1;
|
456
|
|
457
|
|
458
|
$out .= '<div class="pager">';
|
459
|
if($resultPageSTO->pageNumber > 1){
|
460
|
$out .= theme('cdm_pager_link', t('« first'), 1, $resultPageSTO, $path, $parameters, array('class' => 'pager-first'));
|
461
|
$out .= theme('cdm_pager_link', t('‹ previous'), $resultPageSTO->pageNumber - 1, $resultPageSTO, $path, $parameters, array('class' => 'pager-previous'));
|
462
|
}
|
463
|
|
464
|
if($resultPageSTO->totalPageCount <= $viewportsize || $resultPageSTO->pageNumber <= $neighbors){
|
465
|
$first_number = 1;
|
466
|
} else if($resultPageSTO->pageNumber >= $resultPageSTO->totalPageCount - $neighbors){
|
467
|
$first_number = $resultPageSTO->totalPageCount - $viewportsize;
|
468
|
} else {
|
469
|
$first_number = $resultPageSTO->pageNumber - $neighbors;
|
470
|
}
|
471
|
|
472
|
if($first_number > 1){
|
473
|
$out .= '<div class="pager-list-dots-left">...</div>';
|
474
|
}
|
475
|
for($i = $first_number; $i < $first_number + $viewportsize; $i++){
|
476
|
$out .= theme('cdm_pager_link', $i, $i, $resultPageSTO, $path, $parameters, array('class' => 'pager-first'));
|
477
|
}
|
478
|
if($i < $resultPageSTO->totalPageCount){
|
479
|
$out .= '<div class="pager-list-dots-right">...</div>';
|
480
|
}
|
481
|
|
482
|
if($resultPageSTO->pageNumber < $resultPageSTO->totalPageCount){
|
483
|
$out .= theme('cdm_pager_link', t('next ›'), $resultPageSTO->pageNumber + 1, $resultPageSTO, $path, $parameters, array('class' => 'pager-next'));
|
484
|
$out .= theme('cdm_pager_link', t('last »'), $resultPageSTO->totalPageCount, $resultPageSTO, $path, $parameters, array('class' => 'pager-last'));
|
485
|
}
|
486
|
$out .= '</div>';
|
487
|
|
488
|
return $out;
|
489
|
}
|
490
|
}
|
491
|
|
492
|
function theme_cdm_pager_link($text, $linkPageNumber, &$resultPageSTO, $path, $parameters = array(), $attributes) {
|
493
|
|
494
|
$out = '';
|
495
|
|
496
|
if ($linkPageNumber == $resultPageSTO->pageNumber) {
|
497
|
$out = '<strong>'.$text.'</strong>';
|
498
|
} else {
|
499
|
// <a class="pager-next active" title="Go to page 3" href="/node?page=2">3</a>
|
500
|
$parameters['page'] = $linkPageNumber;
|
501
|
$out = l($text, $path, $attributes, compose_url_prameterstr($parameters));
|
502
|
}
|
503
|
|
504
|
|
505
|
return $out;
|
506
|
}
|