EDIT

/**

 * @todo Please document this function.

 * @see http://drupal.org/node/1354

 */

function theme_cdm_annotation_content($variables) {

  $AnnotationTO = $variables['AnnotationTO'];

  drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . '/js/cdm_annotations.js');

  drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . '/js/jquery.form.js');

  $out = theme('cdm_list_of_annotations', array('annotationElements' => $AnnotationTO->annotationElements));

  $annotationUrl = cdm_compose_url(CDM_WS_ANNOTATIONS, array(

    $AnnotationTO->uuid,

  ));

  $annotationProxyUrl = url('cdm_api/proxy/' . urlencode($annotationUrl) . '/cdm_annotation_post');

  // TODO users have to be authenticated to the dataportal to be able to write

  // annotations.

  $out .= '

        <div class="annotation_create">

          <form action="' . $annotationProxyUrl . '" method="POST">

            <textarea name="annotation"></textarea>

            <input type="hidden" name="commentator" value="">

            <input type="submit" value="' . t('Save annotation') . '" />

          </form>

       </div>

  ';

  return $out;

}

/**

 * @todo Please document this function.

 * @see http://drupal.org/node/1354

 */

function theme_cdm_list_of_annotations($variables) {

  $annotationElements = $variables['annotationElements'];

  $out = '<ul class="annotation_list">';

  foreach ($annotationElements as $key => $row) {

    $created[$key] = $row;

  }

  array_multisort($created, SORT_ASC, $annotationElements);

  foreach ($annotationElements as $annotation) {

    $out .= '<li>' . $annotation->text . '</li>';

  }

  $out .= '</ul>';

  return $out;

}

    'cdm_annotation_content' => array('variables' => array('AnnotationTO' => NULL)),

    'cdm_list_of_annotations' => array('variables' => array('annotationElements' => NULL)),