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cdm-dataportal / modules / cdm_dataportal / theme / cdm_dataportal.taxon.theme @ b5e773ef

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<?php
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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy 
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* http://www.e-taxonomy.eu
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* 
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See http://www.mozilla.org/MPL/MPL-1.1.html for the full license terms.
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*/
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function theme_cdm_search_results($pager, $path, $parameters){
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	$showThumbnails = $_SESSION['pageoptions']['searchtaxa']['showThumbnails'];
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	if( !is_numeric($showThumbnails)){
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		$showThumbnails = 1;
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	}
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	$setSessionUri = url('cdm_api/setvalue/session').'/pageoptions|searchtaxa|showThumbnails/';
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	drupal_add_js('$(document).ready(function() {
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        // init
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        if('.$showThumbnails.' == 1){
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              $(\'.media_gallery\').show(20);
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        } else {
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          $(\'.media_gallery\').hide(20);
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        }
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        // add change hander
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        $(\'#showThumbnails\').change(
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          function(event){
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            var state = 0;
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            if($(this).is(\':checked\')){
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              $(\'.media_gallery\').show(20);
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              state = 1;
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            } else {
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              $(\'.media_gallery\').hide(20);
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            }
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            // store state in session variable
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            var uri = \''.$setSessionUri.'\' + state;
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            jQuery.get(uri);
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          });
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        });', "inline");
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	drupal_set_title(t('Search Results'));
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	$out = ''; //l('Advanced Search', '/cdm_dataportal/search');
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	$out = '<div class="page_options"><form name="pageoptions"><input id="showThumbnails" type="checkbox" name="showThumbnails" '.($showThumbnails == 1? 'checked="checked"': '').'> '.t('Show Thumbnails').'</form></div>';
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	if(count($pager->records) > 0){
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		$out .= theme('cdm_list_of_taxa', $pager->records);
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		$out .= theme('cdm_pager', $pager, $path, $parameters);
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	} else {
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		$out = '<h4 class="error">Sorry, no matching entries found.</h4>';
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	}
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	return $out;
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}
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/**
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 * renders misapplied names and invalid designations.
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 * Both relation types are currently treated the same!
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 *
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 * @param unknown_type $taxonRelationships
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 * @return unknown
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 */
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function theme_cdm_taxonRelationships($taxonRelationships){
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	if(!$taxonRelationships){
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		return;
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	}
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	RenderHints::pushToRenderStack('taxonRelationships');
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    $footnoteListKey = 'taxonRelationships';
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    RenderHints::setFootnoteListKey($footnoteListKey);
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	$misapplied = array();
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	$joinedAuthorTeams = array();
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	// aggregate misapplied names having the same fullname:
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	foreach($taxonRelationships as $taxonRelation){
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		if(true || $taxonRelation->type->uuid == UUID_MISAPPLIED_NAME_FOR || $taxonRelation->type->uuid == UUID_INVALID_DESIGNATION_FOR ){
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			$name = $taxonRelation->fromTaxon->name->titleCache;
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			$author_team = cdm_ws_get(CDM_WS_REFERENCE_AUTHORTEAM, $taxonRelation->fromTaxon->sec->uuid);
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			$authorteam = $author_team->titleCache;
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			if(!isset($misapplied[$name])){
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				$misapplied[$name]['out'] = '<span class="misapplied">'.theme('cdm_related_taxon',$taxonRelation->fromTaxon, UUID_MISAPPLIED_NAME_FOR, false).'</span>';
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			}
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			// collect all authors for this fullname
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			if(isset($authorteam)){
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                  $misapplied[$name]['authorteam'][$authorteam] = '';
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                  $joinedAuthorTeams[$authorteam] = 'sensu '.theme('cdm_reference', $taxonRelation->fromTaxon->sec);
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			}
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		}
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	}
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	// sort the joinedAuthorTeams and create footnotes and footnotekeys
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	ksort($joinedAuthorTeams);
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	foreach($joinedAuthorTeams as $authorteam=>$sensuCitation){
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		$footnoteKey = FootnoteManager::addNewFootnote($footnoteListKey, $sensuCitation);
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		$joinedAuthorTeams[$authorteam] = '<span class="sensu">sensu '.$authorteam. theme('cdm_footnote_key', $footnoteKey, $footnoteListKey).'</span>';
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	}
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	// generate output
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	$out = '<ul class="misapplied">';
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	foreach($misapplied as $misapplied_name){
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		$out .= '<li class="synonym">'.$misapplied_name['out'] . " ";
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		// fill authors with the renderedFootnoteKey and sorting 'em
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		foreach($misapplied_name['authorteam'] as $authorteam=>&$renderedFootnoteKey) {
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		  $renderedFootnoteKey = $joinedAuthorTeams[$authorteam];
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	    }
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		if(isset($misapplied_name['authorteam'])){
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			ksort($misapplied_name['authorteam']);
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			$out .= join('; ', $misapplied_name['authorteam']);
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		}
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		$out .= '</li>';
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	}
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	$out .= '</ul>';
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	$out .= theme('cdm_footnotes', $footnoteListKey, 'div');
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    RenderHints::popFromRenderStack();
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	return $out;
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}
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function theme_cdm_acceptedFor(){
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	RenderHints::pushToRenderStack('acceptedFor');
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	$out = '';
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	if(isset($_REQUEST['acceptedFor'])){
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		$synonym = cdm_ws_get(CDM_WS_PORTAL_TAXON, $_REQUEST['acceptedFor']);
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		if($synonym){
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			$out .= '<span class="acceptedFor">';
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			$out .= t('is accepted for ');
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			if(isset($synonym->name->nomenclaturalReference)){
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				$referenceUri = url(path_to_reference($synonym->name->nomenclaturalReference->uuid));
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			}
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			$out .= theme('cdm_taxonName', $synonym->name, null, $referenceUri);
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			$out .= theme('cdm_annotations_as_footnotekeys', $synonym);
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			$out .= '</span>';
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		}
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	}
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    RenderHints::popFromRenderStack();
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	return $out;
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}
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function theme_cdm_list_of_taxa($records, $showMedia = false){
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	RenderHints::pushToRenderStack('list_of_taxa');
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	$showMedia_taxa = variable_get('cdm_dataportal_findtaxa_show_taxon_thumbnails', 1);
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	$showMedia_synonyms = variable_get('cdm_dataportal_findtaxa_show_synonym_thumbnails', 0);
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	// .. well, for sure not as performant as before, but better than nothing.
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	$synonym_uuids = array();
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	foreach($records as $taxon){
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		if($taxon->class != "Taxon"){
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			if(!array_key_exists($taxon->uuid, $synonym_uuids)){
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				$synonym_uuids[$taxon->uuid] = $taxon->uuid;
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			}
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		}
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	}
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	// batch service not jet implemented:
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	// $table_of_accepted = cdm_ws_property(CDM_WS_PORTAL_TAXON_ACCEPTED, join(',', $synonym_uuids));
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	// thus ...
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	$table_of_accepted = array();
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	foreach($synonym_uuids as $synUuid){
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		$table_of_accepted[$synUuid] = cdm_ws_get(CDM_WS_PORTAL_TAXON_ACCEPTED, $synUuid);
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	}
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	$out = '<ul class="cdm_names" style="background-image: none;">';
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	foreach($records as $taxon){
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		// its a Taxon
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		if($taxon->class == "Taxon"){
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			$taxonUri = url(path_to_taxon($taxon->uuid));
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			if(isset($taxon->name->nomenclaturalReference)){
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				$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid));
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			}
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			$out .= '<li class="Taxon">'.theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri);
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            $out .= theme('cdm_annotations_as_footnotekeys', $taxon);
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			if($showMedia_taxa){
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				$out .= theme('cdm_taxon_list_thumbnails', $taxon);
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			}
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			$out .= '</li>';
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		} else {
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			// its a synonym
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			$uuid = $taxon->uuid;
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			$acceptedTaxa = $table_of_accepted[$uuid];
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			if(count($acceptedTaxa) == 1){
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				$acceptedTaxon = $acceptedTaxa[0];
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				$taxonUri = uri_to_synonym($taxon->uuid, $acceptedTaxon->uuid, 'synonymy');
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				if(isset($acceptedTaxon->name->nomenclaturalReference)){
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					$referenceUri = url(path_to_reference($acceptedTaxon->name->nomenclaturalReference->uuid));
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				}
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				$out .= '<li class="Synonym">'.theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri);
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				$out .= theme('cdm_annotations_as_footnotekeys', $taxon);
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				if($showMedia_synonyms){
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					$out .= theme('cdm_taxon_list_thumbnails', $acceptedTaxon);
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				}
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				$out .= '</li>';
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			} else {
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				//TODO avoid using Ajax in the cdm_dynabox
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				//TODO add media
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				$out .= theme('cdm_dynabox', theme('cdm_taxonName', $taxon->name, null, null, false), cdm_compose_url(CDM_WS_PORTAL_TAXON_ACCEPTED, array($taxon->uuid)), 'cdm_list_of_taxa');
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			}
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		}
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	}
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	$out .= '</ul>';
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	RenderHints::popFromRenderStack();
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	return $out;
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}
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function theme_cdm_related_taxon($taxon, $reltype_uuid = false){
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	$relsign = '';
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	$name_prefix = '';
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	$name_postfix = '';
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	switch ($reltype_uuid){
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		case UUID_HETEROTYPIC_SYNONYM_OF:
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		case UUID_SYNONYM_OF:
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			$relsign = '=';
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			break;
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		case UUID_HOMOTYPIC_SYNONYM_OF:
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			$relsign = '≡';
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			break;
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		case UUID_MISAPPLIED_NAME_FOR:
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		case UUID_INVALID_DESIGNATION_FOR:
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			$relsign = '&ndash;'; // &ndash; &mdash; &minus;
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			$name_prefix = '"';
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			$name_postfix = '"';
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			break;
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		default :
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			$relsign = '&ndash;';
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	}
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	 RenderHints::pushToRenderStack('related_taxon');
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	//$taxonUri = url(path_to_taxon($taxon->uuid));
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	if($taxon->name->nomenclaturalReference){
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		$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid));
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	}
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	$nameHtml = theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri);
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	$nameHtml .= theme('cdm_annotations_as_footnotekeys', $taxon);
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	//later homonym or trated as later homonym
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	$taxon_name_relations = cdm_ws_get(CDM_WS_PORTAL_TAXON_NAMERELATIONS, $taxon->uuid);
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	foreach($taxon_name_relations as $element){	
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    switch ($element->type->representation_L10n){
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      case 'later homonym for':
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        $later_homonym = ' [non ' . l($element->fromName->titleCache . ']', 
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                                     'cdm_dataportal/name/' . $element->fromName->uuid . '/' . $taxon->uuid);
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        break;
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    case 'treated as later homonym for':
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        $later_homonym = ' [non ' . l($element->fromName->titleCache . ']', 
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                                     'cdm_dataportal/name/' . $element->fromName->uuid);
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        break;
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    }	
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	}
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	$out = '<span class="relation_sign">'.$relsign.'</span>'.$name_prefix . $nameHtml . $name_postfix . $later_homonym;
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  //var_dump($taxon_name_relations[0]->type->representation_L10n);  
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	$out = uuid_anchor($taxon->uuid, $out);
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	RenderHints::popFromRenderStack();
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	return $out; 
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}
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/**
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 */
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function theme_cdm_taxon_list_thumbnails($taxon){
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	$gallery_name = $taxon->uuid;
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	$showCaption = variable_get('cdm_dataportal_findtaxa_show_thumbnail_captions', 1);
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	$prefMimeTypeRegex = 'image:.*';
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	$prefMediaQuality = '*';
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	$gallery_settings = getGallerySettings(CDM_DATAPORTAL_SEARCH_GALLERY_NAME);
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	if($showCaption){
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		//$captionElements = array('title', '#uri'=>t('open Image'));
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		$captionElements = array('title', 'rights');
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	}
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	$galleryLinkUri = path_to_taxon($taxon->uuid).'/images';
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	$selectShowMedia = variable_get('cdm_dataportal_show_media', 0);
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	if ($selectShowMedia == 0){
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		$mediaList = cdm_ws_get(CDM_WS_PORTAL_TAXON_MEDIA, array($taxon->uuid, $prefMimeTypeRegex, $prefMediaQuality));
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	}else{
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		$mediaList = cdm_ws_get(CDM_WS_PORTAL_TAXON_SUBTREE_MEDIA, array($taxon->uuid, $prefMimeTypeRegex, $prefMediaQuality));
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	}
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	//$mediaList = cdm_ws_get(CDM_WS_PORTAL_TAXONOMY_MEDIA, array(variable_get('cdm_taxonomictree_uuid', false), $taxon ->rank, $taxon->uuid ));
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	$out .= theme('cdm_media_gallerie', $mediaList, $gallery_name ,
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					$gallery_settings['cdm_dataportal_media_maxextend'], 
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	             	$gallery_settings['cdm_dataportal_media_cols'], 
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	             	$gallery_settings['cdm_dataportal_media_maxRows'], 
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	             	$captionElements, 'LIGHTBOX', null, $galleryLinkUri);
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	return $out;
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}
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