Revision b5e773ef
Added by Andreas Kohlbecker almost 14 years ago
| modules/cdm_dataportal/cdm_api/cdm_api.module | ||
|---|---|---|
| 487 | 487 |
case 'ReferenceBase': |
| 488 | 488 |
$ws_base_uri = CDM_WS_REFERENCE; |
| 489 | 489 |
break; |
| 490 |
case 'Distribution': |
|
| 491 |
case 'TextData': |
|
| 492 |
case 'TaxonInteraction': |
|
| 493 |
case 'QuantitativeData': |
|
| 494 |
case 'IndividualsAssociation': |
|
| 495 |
case 'Distribution': |
|
| 496 |
case 'CommonTaxonName': |
|
| 497 |
case 'CategoricalData': |
|
| 498 |
$ws_base_uri = CDM_WS_DESCRIPTIONELEMENT; |
|
| 499 |
break; |
|
| 490 | 500 |
default: trigger_error('Unsupported CDM Class - no annotations available for ' . $cdmBase->class, E_USER_ERROR);
|
| 491 | 501 |
return; |
| 492 | 502 |
} |
| modules/cdm_dataportal/cdm_api/webservice_uris.php | ||
|---|---|---|
| 32 | 32 |
|
| 33 | 33 |
define('CDM_WS_PORTAL_TAXON_NAMERELATIONS', 'portal/taxon/$0/nameRelationships');
|
| 34 | 34 |
|
| 35 |
define('CDM_WS_DESCRIPTIONELEMENT', 'descriptionelement/$0');
|
|
| 36 |
|
|
| 35 | 37 |
|
| 36 | 38 |
/** |
| 37 | 39 |
* @parameters $0 : the taxon uuid |
| modules/cdm_dataportal/cdm_dataportal.css | ||
|---|---|---|
| 323 | 323 |
font-style: italic; |
| 324 | 324 |
} |
| 325 | 325 |
|
| 326 |
.footnote-anchor {
|
|
| 327 |
font-weight: bold; |
|
| 328 |
} |
|
| 329 |
|
|
| 326 | 330 |
.heterotypicSynonymyGroup li.footnotes, .homotypicSynonymyGroup li.footnotes{
|
| 327 | 331 |
margin-top: 10px; |
| 328 | 332 |
margin-left: 6px; |
| modules/cdm_dataportal/js/footnotes.js | ||
|---|---|---|
| 6 | 6 |
} |
| 7 | 7 |
|
| 8 | 8 |
function getFootnoteKeyClassName(object){
|
| 9 |
return '.'+$(object).attr('href').substr(1).replace(/-/gi, '-key-');
|
|
| 9 |
return '.'+$(object).attr('href').substr(1).replace(/-/gi, '-key-') + ' a';
|
|
| 10 | 10 |
} |
| 11 | 11 |
|
| 12 |
$('a.footnote-key').mouseover(function(e){
|
|
| 12 |
$('span.footnote-key a').mouseover(function(e){
|
|
| 13 | 13 |
var fnClassName = getFootnoteClassName(this); |
| 14 | 14 |
var fnKeyClassName = getFootnoteKeyClassName(this); |
| 15 | 15 |
$('.footnote').css('background-color', 'transparent').css('background-color', 'transparent').removeClass('active');
|
| 16 |
$('a.footnote-key').css('background-color', 'transparent').css('background-color', 'transparent').removeClass('active');
|
|
| 16 |
$('span.footnote-key a').css('background-color', 'transparent').css('background-color', 'transparent').removeClass('active');
|
|
| 17 | 17 |
$(fnClassName).css('background-color', 'yellow');
|
| 18 | 18 |
$(fnKeyClassName).css('background-color', 'yellow');
|
| 19 | 19 |
} |
| ... | ... | |
| 27 | 27 |
var fnClassName = getFootnoteClassName(this); |
| 28 | 28 |
var fnKeyClassName = getFootnoteKeyClassName(this); |
| 29 | 29 |
$('.footnote').css('background-color', 'transparent').removeClass('active');
|
| 30 |
$('a.footnote-key').css('background-color', 'transparent').removeClass('active');
|
|
| 30 |
$('span.footnote-key a').css('background-color', 'transparent').removeClass('active');
|
|
| 31 | 31 |
$(fnClassName).css('background-color', 'yellow').addClass('active');
|
| 32 | 32 |
$(fnKeyClassName).css('background-color', 'yellow').addClass('active');
|
| 33 | 33 |
}); |
| 34 | 34 |
|
| 35 |
}));
|
|
| 35 |
}); |
|
| 36 | 36 |
} |
| modules/cdm_dataportal/theme/cdm_dataportal.common.theme | ||
|---|---|---|
| 109 | 109 |
* TODO it should be configurable which objects can be annotated as this might differ in dataportals |
| 110 | 110 |
* |
| 111 | 111 |
*/ |
| 112 |
function theme_cdm_annotations($cdmBase){
|
|
| 113 |
|
|
| 112 |
function theme_cdm_annotations_as_footnotekeys($cdmBase){
|
|
| 114 | 113 |
|
| 115 | 114 |
$annotationUrl = cdm_compose_annotations_url($cdmBase); |
| 116 | 115 |
if($annotationUrl){
|
| 117 | 116 |
$annotationPager = cdm_ws_get($annotationUrl, null, null, null, true); |
| 118 | 117 |
if($annotationPager->count > 0){
|
| 119 | 118 |
foreach($annotationPager->records as $annotation){
|
| 120 |
$footnoteKey = FootnoteManager::addNewFootnote(RenderHints::getFootnoteListKey(), $annotation->text); |
|
| 121 |
$out .= (isset($out)? ',' : '') . theme('cdm_footnote_key', $footnoteKey);
|
|
| 119 |
$footnoteKey = FootnoteManager::addNewFootnote(RenderHints::getFootnoteListKey() . '-annotations', $annotation->text);
|
|
| 120 |
$out .= theme('cdm_footnote_key', $footnoteKey, RenderHints::getFootnoteListKey() . '-annotations', (isset($out)? ',' : ''));
|
|
| 122 | 121 |
} |
| 123 | 122 |
} |
| 124 | 123 |
} |
| 125 |
|
|
| 126 | 124 |
return $out; |
| 125 |
} |
|
| 127 | 126 |
|
| 128 | 127 |
|
| 128 |
function theme_cdm_annotation_footnotes($footnoteListKey, $enclosingTag = 'span'){
|
|
| 129 |
return theme('cdm_footnotes', $footnoteListKey . '-annotations', $enclosingTag);
|
|
| 129 | 130 |
} |
| 130 | 131 |
|
| 131 | 132 |
function theme_cdm_annotation_content($AnnotationTO){
|
| ... | ... | |
| 173 | 174 |
|
| 174 | 175 |
/* ============================ footnotes ============================= */ |
| 175 | 176 |
|
| 176 |
function theme_cdm_footnote_key($footnoteKey, $highlightable=true){
|
|
| 177 |
$out = '<a href="#footnote-'.$footnoteKey.'" class="footnote-key footnote-key-'.$footnoteKey.'">'.$footnoteKey.'</a>'; |
|
| 177 |
function theme_cdm_footnote_key($footnoteKey, $footnoteListKey, $separator = '', $highlightable=true){
|
|
| 178 |
$out = '<span class="footnote-key footnote-key-'.$footnoteKey.' member-of-footnotes-'.$footnoteListKey.'">'.$separator |
|
| 179 |
.'<a href="#footnote-'.$footnoteKey.'">'.$footnoteKey.'</a>' |
|
| 180 |
.'</span>'; |
|
| 178 | 181 |
return $out; |
| 179 | 182 |
} |
| 180 | 183 |
|
| ... | ... | |
| 184 | 187 |
return $out; |
| 185 | 188 |
} |
| 186 | 189 |
|
| 190 |
|
|
| 187 | 191 |
function theme_cdm_footnotes($footnoteListKey, $enclosingTag = 'span'){
|
| 188 | 192 |
|
| 189 |
$out = '<'.$enclosingTag.' class="footnotes footnotes-'.$footnoteListKey.'">' . FootnoteManager::renderFootnoteList($footnoteListKey) . '</'.$enclosingTag.'>'; |
|
| 193 |
$out = '<'.$enclosingTag.' class="footnotes footnotes-'.$footnoteListKey.' ">' . FootnoteManager::renderFootnoteList($footnoteListKey) . '</'.$enclosingTag.'>';
|
|
| 190 | 194 |
return $out; |
| 191 | 195 |
} |
| 192 | 196 |
|
| modules/cdm_dataportal/theme/cdm_dataportal.descriptions.theme | ||
|---|---|---|
| 42 | 42 |
if(!$mergedTrees){
|
| 43 | 43 |
return; |
| 44 | 44 |
} |
| 45 |
|
|
| 46 | 45 |
foreach($mergedTrees as &$mTree){
|
| 47 | 46 |
//TODO diplay title and reference in case of multiple $mergedTrees -> theme |
| 48 | 47 |
$out .= theme('cdm_feature_nodes', $mTree->root->children, $taxon);
|
| ... | ... | |
| 75 | 74 |
|
| 76 | 75 |
function theme_cdm_feature_nodes($featureNodes, $taxon){
|
| 77 | 76 |
|
| 77 |
RenderHints::pushToRenderStack('feature_nodes');
|
|
| 78 | 78 |
$gallery_settings = getGallerySettings(CDM_DATAPORTAL_DESCRIPTION_GALLERY_NAME); |
| 79 | 79 |
|
| 80 | 80 |
foreach($featureNodes as $node){
|
| ... | ... | |
| 111 | 111 |
if($node->feature->uuid == UUID_DISTRIBUTION){
|
| 112 | 112 |
$out .= theme('cdm_descriptionElements_distribution', $taxon);
|
| 113 | 113 |
} |
| 114 |
|
|
| 115 |
$out .= theme('cdm_footnotes', $node->feature->uuid);
|
|
| 116 |
$out .= theme('cdm_annotation_footnotes', $node->feature->uuid);
|
|
| 114 | 117 |
} |
| 115 | 118 |
} |
| 116 | 119 |
// theme |
| ... | ... | |
| 120 | 123 |
$out .= '</div>'; |
| 121 | 124 |
} |
| 122 | 125 |
} |
| 126 |
RenderHints::popFromRenderStack(); |
|
| 123 | 127 |
return $out; |
| 124 | 128 |
} |
| 125 | 129 |
|
| ... | ... | |
| 165 | 169 |
if(strlen($sourceRefs) > 0){
|
| 166 | 170 |
$sourceRefs = '<span class="sources">' . $sourceRefs . '</span>'; |
| 167 | 171 |
} |
| 168 |
/* |
|
| 169 |
$out = l('<span class="reference">'.$reference.'</span>'
|
|
| 170 |
, path_to_reference($descriptionElementSource->citation->uuid) |
|
| 171 |
, array("class"=>"reference")
|
|
| 172 |
, NULL, NULL, FALSE ,TRUE); |
|
| 173 |
*/ |
|
| 172 |
|
|
| 174 | 173 |
if ($source->nameUsedInSource->uuid){ //do a link to name page
|
| 175 | 174 |
$name_used_in_source_link_to_show = l($source->nameUsedInSource->titleCache, |
| 176 | 175 |
path_to_name($source->nameUsedInSource->uuid), |
| ... | ... | |
| 192 | 191 |
} |
| 193 | 192 |
|
| 194 | 193 |
// add annotations as footnote key |
| 195 |
$out .= theme('cdm_annotations', $element);
|
|
| 194 |
$out .= theme('cdm_annotations_as_footnotekeys', $element);
|
|
| 196 | 195 |
return $out; |
| 197 | 196 |
} |
| 198 | 197 |
|
| ... | ... | |
| 242 | 241 |
$feature = $descriptionElement->feature; |
| 243 | 242 |
$out = theme('cdm_descriptionElementArray', $outArray, $feature, $glue, $sortOutArray, $enclosingHtml);
|
| 244 | 243 |
|
| 245 |
$out .= '<div class="footnote_list">'. FootnoteManager::renderFootnoteList($featureUuid) . '</div>'; |
|
| 246 |
|
|
| 247 | 244 |
RenderHints::popFromRenderStack(); |
| 248 | 245 |
|
| 249 | 246 |
return $out; |
| ... | ... | |
| 257 | 254 |
function theme_cdm_descriptionElementDistribution($descriptionElements){
|
| 258 | 255 |
|
| 259 | 256 |
$out = ''; |
| 260 |
$separator = ', '; |
|
| 261 |
|
|
| 257 |
$separator = ','; |
|
| 258 |
RenderHints::pushToRenderStack('descriptionElementDistribution');
|
|
| 259 |
RenderHints::setFootnoteListKey(UUID_DISTRIBUTION); |
|
| 262 | 260 |
foreach($descriptionElements as $descriptionElement){
|
| 263 |
//$footnoteKey = FootnoteManager::addNewFootnote($descriptionElement->feature->uuid, $descriptionElement->area->representation_L10n); |
|
| 264 |
// $footnoteKeyList = ''; |
|
| 265 |
// foreach($descriptionElement->sources as $source){
|
|
| 266 |
// $footnoteKey = FootnoteManager::addNewFootnote($descriptionElement->feature->uuid, theme('cdm_DescriptionElementSource', $source));
|
|
| 267 |
// $footnoteKeyList .= theme('cdm_footnode_key', $footnoteKey) . ' ';
|
|
| 268 |
// } |
|
| 269 |
$out .= $descriptionElement->area->representation_L10n . $footnoteKeyList . $separator; |
|
| 261 |
// annotations as footnotes |
|
| 262 |
$annotationFootnoteKeys = theme('cdm_annotations_as_footnotekeys', $descriptionElement);
|
|
| 263 |
// source references as footnotes |
|
| 264 |
$sourcesFootnoteKeyList = ''; |
|
| 265 |
foreach($descriptionElement->sources as $source){
|
|
| 266 |
$_fkey = FootnoteManager::addNewFootnote(UUID_DISTRIBUTION, theme('cdm_DescriptionElementSource', $source, false));
|
|
| 267 |
$sourcesFootnoteKeyList .= theme('cdm_footnote_key', $_fkey, UUID_DISTRIBUTION, ($sourcesFootnoteKeyList ? $separator : ''));
|
|
| 268 |
} |
|
| 269 |
if($annotationFootnoteKeys && $sourcesFootnoteKeyList){
|
|
| 270 |
$annotationFootnoteKeys .= $separator; |
|
| 271 |
} |
|
| 272 |
$out .= $descriptionElement->area->representation_L10n . $annotationFootnoteKeys . $sourcesFootnoteKeyList . ' '; |
|
| 270 | 273 |
} |
| 274 |
|
|
| 275 |
|
|
| 271 | 276 |
$out = substr($out, 0, strlen($out)-strlen($separator) ); |
| 272 | 277 |
|
| 273 | 278 |
$taxonTrees = cdm_ws_get(CDM_WS_PORTAL_TAXONOMY); |
| ... | ... | |
| 278 | 283 |
} |
| 279 | 284 |
} |
| 280 | 285 |
|
| 281 |
// $referenceCitation = l('<span class="reference">('.$reference->title.')</span>', path_to_reference($reference->uuid), array("class"=>"reference"), NULL, NULL, FALSE ,TRUE);
|
|
| 282 |
// if($descriptions && strlen($descriptions) > 0 ){
|
|
| 283 |
// $sourceRefs .= ' '.$referenceCitation; |
|
| 284 |
// } |
|
| 285 |
|
|
| 286 |
RenderHints::popFromRenderStack(); |
|
| 286 | 287 |
return $out; |
| 287 | 288 |
|
| 288 | 289 |
} |
| ... | ... | |
| 290 | 291 |
|
| 291 | 292 |
function theme_cdm_DescriptionElementSource($descriptionElementSource, $doLink = TRUE){
|
| 292 | 293 |
|
| 293 |
$out = theme('cdm_reference', $descriptionElementSource->citation, $descriptionElementSource->citationMicroReference, TRUE);
|
|
| 294 |
|
|
| 294 |
$out = theme('cdm_reference', $descriptionElementSource->citation, $descriptionElementSource->citationMicroReference, $doLink);
|
|
| 295 |
|
|
| 295 | 296 |
// add annotations as footnote key |
| 296 |
$out .= theme('cdm_annotations', $descriptionElementSource->citation);
|
|
| 297 |
$out .= theme('cdm_annotations_as_footnotekeys', $descriptionElementSource->citation);
|
|
| 297 | 298 |
return $out; |
| 298 | 299 |
} |
| 299 | 300 |
|
| modules/cdm_dataportal/theme/cdm_dataportal.name.theme | ||
|---|---|---|
| 205 | 205 |
$out .= theme('cdm_typedesignations', $typeDesignations);
|
| 206 | 206 |
} |
| 207 | 207 |
|
| 208 |
$out .= theme('cdm_footnotes', $footnoteListKey, 'li');
|
|
| 208 |
$out .= theme('cdm_annotation_footnotes', $footnoteListKey, 'li');
|
|
| 209 | 209 |
$out .= '</ul>'; |
| 210 | 210 |
|
| 211 | 211 |
|
| ... | ... | |
| 243 | 243 |
$out .= theme('cdm_typedesignations', $typeDesignations);
|
| 244 | 244 |
} |
| 245 | 245 |
|
| 246 |
$out .= theme('cdm_footnotes', $footnoteListKey, 'li');
|
|
| 246 |
$out .= theme('cdm_annotation_footnotes', $footnoteListKey, 'li');
|
|
| 247 | 247 |
$out .= '</ul>'; |
| 248 | 248 |
|
| 249 | 249 |
RenderHints::popFromRenderStack(); |
| ... | ... | |
| 251 | 251 |
} |
| 252 | 252 |
|
| 253 | 253 |
|
| 254 |
function theme_cdm_taxonName($taxonName, $nameLink = NULL, $refenceLink = NULL){
|
|
| 254 |
function theme_cdm_taxonName($taxonName, $nameLink = NULL, $refenceLink = NULL, $showAnnotations = true){
|
|
| 255 | 255 |
|
| 256 | 256 |
$renderTemplate = get_nameRenderTemplate(RenderHints::getRenderPath(), $nameLink, $refenceLink); |
| 257 | 257 |
$partDefinition = get_partDefinition($taxonName->class); |
| ... | ... | |
| 414 | 414 |
} |
| 415 | 415 |
$out .= '</span>'; |
| 416 | 416 |
|
| 417 |
// add annotations |
|
| 418 |
$out .= theme('cdm_annotations', $taxonName);
|
|
| 417 |
$out .= theme('cdm_annotations_as_footnotekeys', $taxonName);
|
|
| 419 | 418 |
|
| 420 | 419 |
return $out; |
| 421 | 420 |
} |
| modules/cdm_dataportal/theme/cdm_dataportal.page.theme | ||
|---|---|---|
| 22 | 22 |
if(isset($taxon->name->nomenclaturalReference)){
|
| 23 | 23 |
$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid)); |
| 24 | 24 |
} |
| 25 |
$out = theme('cdm_taxonName', $taxon->name, null, $referenceUri);
|
|
| 25 |
$out = theme('cdm_taxonName', $taxon->name, null, $referenceUri, false);
|
|
| 26 | 26 |
RenderHints::popFromRenderStack(); |
| 27 | 27 |
|
| 28 | 28 |
return '<span class="'.$taxon->class.'">'.$out.'</span>'; |
| ... | ... | |
| 34 | 34 |
* @return the formatted name title |
| 35 | 35 |
*/ |
| 36 | 36 |
function theme_cdm_name_page_title($taxon_name){
|
| 37 |
$renderPath = 'taxon_page_title';
|
|
| 37 |
RenderHints::pushToRenderStack('taxon_page_title');
|
|
| 38 | 38 |
if(isset($taxon_name->nomenclaturalReference)){
|
| 39 | 39 |
$referenceUri = url(path_to_reference($taxon_name->nomenclaturalReference->uuid)); |
| 40 | 40 |
} |
| 41 |
return '<span class="'.$taxon_name->class.'">'.theme('cdm_taxonName', $taxon_name, null, $referenceUri, $renderPath).'</span>';
|
|
| 41 |
|
|
| 42 |
$out = '<span class="'.$taxon_name->class.'">'.theme('cdm_taxonName', $taxon_name, null, $referenceUri, false).'</span>';
|
|
| 43 |
RenderHints::popFromRenderStack(); |
|
| 44 |
return $out; |
|
| 42 | 45 |
} |
| 43 | 46 |
|
| 44 | 47 |
/** |
| ... | ... | |
| 190 | 193 |
$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid)); |
| 191 | 194 |
} |
| 192 | 195 |
$out .= theme('cdm_taxonName', $taxon->name, null, $referenceUri);
|
| 196 |
$out .= theme('cdm_annotations_as_footnotekeys', $taxon);
|
|
| 193 | 197 |
} |
| 194 | 198 |
|
| 195 | 199 |
if($addAcceptedTaxon && !isset($synomymie->homotypicSynonymsByHomotypicGroup[0])){
|
| modules/cdm_dataportal/theme/cdm_dataportal.references.theme | ||
|---|---|---|
| 56 | 56 |
if(!empty($descriptionElementSource->citationMicroReference)){
|
| 57 | 57 |
$out .= ': '. $descriptionElementSource->citationMicroReference; |
| 58 | 58 |
} |
| 59 |
|
|
| 59 |
|
|
| 60 |
return $out; |
|
| 60 | 61 |
} |
| modules/cdm_dataportal/theme/cdm_dataportal.taxon.theme | ||
|---|---|---|
| 103 | 103 |
ksort($joinedAuthorTeams); |
| 104 | 104 |
foreach($joinedAuthorTeams as $authorteam=>$sensuCitation){
|
| 105 | 105 |
$footnoteKey = FootnoteManager::addNewFootnote($footnoteListKey, $sensuCitation); |
| 106 |
$joinedAuthorTeams[$authorteam] = '<span class="sensu">sensu '.$authorteam. theme('cdm_footnote_key', $footnoteKey).'</span>';
|
|
| 106 |
$joinedAuthorTeams[$authorteam] = '<span class="sensu">sensu '.$authorteam. theme('cdm_footnote_key', $footnoteKey, $footnoteListKey).'</span>';
|
|
| 107 | 107 |
} |
| 108 | 108 |
|
| 109 | 109 |
// generate output |
| ... | ... | |
| 112 | 112 |
foreach($misapplied as $misapplied_name){
|
| 113 | 113 |
|
| 114 | 114 |
$out .= '<li class="synonym">'.$misapplied_name['out'] . " "; |
| 115 |
// fill authors the renderedFootnoteKey and sorting 'em |
|
| 115 |
// fill authors with the renderedFootnoteKey and sorting 'em
|
|
| 116 | 116 |
foreach($misapplied_name['authorteam'] as $authorteam=>&$renderedFootnoteKey) {
|
| 117 | 117 |
$renderedFootnoteKey = $joinedAuthorTeams[$authorteam]; |
| 118 | 118 |
} |
| ... | ... | |
| 125 | 125 |
} |
| 126 | 126 |
$out .= '</ul>'; |
| 127 | 127 |
|
| 128 |
$out .= theme('cdm_footnotes', $footnoteListKey, 'div');
|
|
| 128 | 129 |
RenderHints::popFromRenderStack(); |
| 129 | 130 |
return $out; |
| 130 | 131 |
} |
| ... | ... | |
| 144 | 145 |
$referenceUri = url(path_to_reference($synonym->name->nomenclaturalReference->uuid)); |
| 145 | 146 |
} |
| 146 | 147 |
$out .= theme('cdm_taxonName', $synonym->name, null, $referenceUri);
|
| 148 |
$out .= theme('cdm_annotations_as_footnotekeys', $synonym);
|
|
| 147 | 149 |
$out .= '</span>'; |
| 148 | 150 |
} |
| 149 | 151 |
} |
| ... | ... | |
| 185 | 187 |
$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid)); |
| 186 | 188 |
} |
| 187 | 189 |
$out .= '<li class="Taxon">'.theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri);
|
| 190 |
$out .= theme('cdm_annotations_as_footnotekeys', $taxon);
|
|
| 191 |
|
|
| 188 | 192 |
if($showMedia_taxa){
|
| 189 | 193 |
$out .= theme('cdm_taxon_list_thumbnails', $taxon);
|
| 190 | 194 |
} |
| 195 |
|
|
| 191 | 196 |
$out .= '</li>'; |
| 192 | 197 |
} else {
|
| 193 | 198 |
// its a synonym |
| ... | ... | |
| 200 | 205 |
$referenceUri = url(path_to_reference($acceptedTaxon->name->nomenclaturalReference->uuid)); |
| 201 | 206 |
} |
| 202 | 207 |
$out .= '<li class="Synonym">'.theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri);
|
| 208 |
$out .= theme('cdm_annotations_as_footnotekeys', $taxon);
|
|
| 203 | 209 |
if($showMedia_synonyms){
|
| 204 | 210 |
$out .= theme('cdm_taxon_list_thumbnails', $acceptedTaxon);
|
| 205 | 211 |
} |
| ... | ... | |
| 207 | 213 |
} else {
|
| 208 | 214 |
//TODO avoid using Ajax in the cdm_dynabox |
| 209 | 215 |
//TODO add media |
| 210 |
$out .= theme('cdm_dynabox', theme('cdm_taxonName', $taxon->name, null, null), cdm_compose_url(CDM_WS_PORTAL_TAXON_ACCEPTED, array($taxon->uuid)), 'cdm_list_of_taxa');
|
|
| 216 |
$out .= theme('cdm_dynabox', theme('cdm_taxonName', $taxon->name, null, null, false), cdm_compose_url(CDM_WS_PORTAL_TAXON_ACCEPTED, array($taxon->uuid)), 'cdm_list_of_taxa');
|
|
| 211 | 217 |
} |
| 212 | 218 |
} |
| 213 | 219 |
} |
| ... | ... | |
| 247 | 253 |
$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid)); |
| 248 | 254 |
} |
| 249 | 255 |
$nameHtml = theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri);
|
| 256 |
$nameHtml .= theme('cdm_annotations_as_footnotekeys', $taxon);
|
|
| 250 | 257 |
|
| 251 | 258 |
//later homonym or trated as later homonym |
| 252 | 259 |
$taxon_name_relations = cdm_ws_get(CDM_WS_PORTAL_TAXON_NAMERELATIONS, $taxon->uuid); |
| themes/diptera/template.php | ||
|---|---|---|
| 8 | 8 |
$sortOutArray = false; |
| 9 | 9 |
$enclosingHtml = 'ul'; |
| 10 | 10 |
|
| 11 |
|
|
| 12 |
RenderHints::pushToRenderStack('cdm_descriptionElements');
|
|
| 13 |
|
|
| 14 |
|
|
| 11 | 15 |
// only for diptera |
| 12 | 16 |
if(isset($descriptionElements[0]) && $descriptionElements[0]->feature->uuid == UUID_CITATION ) {
|
| 13 | 17 |
foreach($descriptionElements as $element){
|
| ... | ... | |
| 42 | 46 |
} |
| 43 | 47 |
} |
| 44 | 48 |
|
| 45 |
return theme('cdm_descriptionElementArray', $outArray, $feature, $glue, $sortOutArray, $enclosingHtml);
|
|
| 49 |
$out = theme('cdm_descriptionElementArray', $outArray, $feature, $glue, $sortOutArray, $enclosingHtml);
|
|
| 50 |
RenderHints::popFromRenderStack(); |
|
| 51 |
return $out; |
|
| 46 | 52 |
} |
| 47 | 53 |
|
| 48 | 54 |
/** |
| themes/garland_cichorieae/template.php | ||
|---|---|---|
| 14 | 14 |
*/ |
| 15 | 15 |
function garland_cichorieae_cdm_taxon_page_description($taxon, $mergedTrees, $media, $hideImages = false){
|
| 16 | 16 |
|
| 17 |
RenderHints::pushToRenderStack('taxon_page_description');
|
|
| 17 | 18 |
// description TOC |
| 18 | 19 |
$out = theme('cdm_featureTreeTOCs', $mergedTrees);
|
| 19 | 20 |
|
| ... | ... | |
| 35 | 36 |
|
| 36 | 37 |
// description |
| 37 | 38 |
$out .= theme('cdm_featureTrees', $mergedTrees, $taxon);
|
| 38 |
|
|
| 39 |
RenderHints::popFromRenderStack(); |
|
| 40 |
|
|
| 39 | 41 |
return $out; |
| 40 | 42 |
} |
| 41 | 43 |
|
| ... | ... | |
| 50 | 52 |
return '<p class="descriptionText">' . $description . $referenceCitation.'</p>'; |
| 51 | 53 |
} |
| 52 | 54 |
|
| 55 |
|
|
| 53 | 56 |
function garland_cichorieae_cdm_taxon_page_images($taxon, $media){
|
| 54 | 57 |
|
| 55 | 58 |
$flashLink = isset($media[0]); |
| themes/palmweb_2/template.php | ||
|---|---|---|
| 94 | 94 |
|
| 95 | 95 |
$descriptions = ''; |
| 96 | 96 |
$separator = ', '; |
| 97 |
|
|
| 98 |
foreach($descriptionElements as $descriptionElement){
|
|
| 99 |
$descriptions .= $descriptionElement->area->representation_L10n . $separator; |
|
| 100 |
} |
|
| 97 |
|
|
| 98 |
RenderHints::pushToRenderStack('descriptionElementDistribution');
|
|
| 99 |
RenderHints::setFootnoteListKey(UUID_DISTRIBUTION); |
|
| 100 |
foreach($descriptionElements as $descriptionElement){
|
|
| 101 |
// annotations as footnotes |
|
| 102 |
$annotationFootnoteKeys = theme('cdm_annotations_as_footnotekeys', $descriptionElement);
|
|
| 103 |
// // source references as footnotes |
|
| 104 |
// $sourcesFootnoteKeyList = ''; |
|
| 105 |
// foreach($descriptionElement->sources as $source){
|
|
| 106 |
// $_fkey = FootnoteManager::addNewFootnote(UUID_DISTRIBUTION, theme('cdm_DescriptionElementSource', $source, false));
|
|
| 107 |
// $sourcesFootnoteKeyList .= theme('cdm_footnote_key', $_fkey, UUID_DISTRIBUTION, ($sourcesFootnoteKeyList ? $separator : ''));
|
|
| 108 |
// } |
|
| 109 |
if($annotationFootnoteKeys && $sourcesFootnoteKeyList){
|
|
| 110 |
$annotationFootnoteKeys .= $separator; |
|
| 111 |
} |
|
| 112 |
$out .= $descriptionElement->area->representation_L10n . $annotationFootnoteKeys . $sourcesFootnoteKeyList . ' '; |
|
| 113 |
} |
|
| 114 |
|
|
| 101 | 115 |
$descriptions = substr($descriptions, 0, strlen($descriptions)-2); |
| 102 | 116 |
$taxonTrees = cdm_ws_get(CDM_WS_PORTAL_TAXONOMY); |
| 103 | 117 |
foreach($taxonTrees as $taxonTree){
|
| ... | ... | |
| 117 | 131 |
if(strlen($sourceRefs) > 0){
|
| 118 | 132 |
$sourceRefs = '<span class="sources">' . $sourceRefs . '</span>'; |
| 119 | 133 |
} |
| 134 |
|
|
| 135 |
RenderHints::popFromRenderStack(); |
|
| 120 | 136 |
return $descriptions. $sourceRefs ; |
| 121 | 137 |
|
| 122 | 138 |
} |
Also available in: Unified diff
#392 CICHORIEAE display notes & #1483 references for distributions as footnotes