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<?php
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// $Id$
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/**
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* Overrides of generic themeing functions in cdm_datportal.theme.php
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*/
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/**
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* The description page is supposed to be the front page for a taxon.
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*
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* @param TaxonTO $taxonTO
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* @return
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*/
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function garland_cichorieae_cdm_taxon_page_description($taxon, $mergedTrees, $media, $hideImages = false){
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RenderHints::pushToRenderStack('taxon_page_description');
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// description TOC
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$out = theme('cdm_featureTreeTOCs', $mergedTrees);
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// preferred image
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// 2 lines hard coded for testing
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if( variable_get('cdm_dataportal_show_default_image', false) && !$hideImages){
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//$defaultPreferredImage = drupal_get_path('theme', 'garland_cichorieae').'/images/nopic_400x300.jpg';
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$defaultRepresentationPart = false;
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$defaultRepresentationPart->width = 400;
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$defaultRepresentationPart->height = 300;
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$defaultRepresentationPart->uri = drupal_get_path('theme', 'garland_cichorieae').'/images/nopic_400x300_4x3cm.jpg';
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$imageUriParams = '&width=400&height=300&quality=95&format=jpeg';
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$imageMaxExtend = 400;
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$out .= '<div class="preferredImage">'.theme('cdm_preferredImage', $media, $defaultRepresentationPart, $imageMaxExtend, $imageUriParams).'</div>';
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}
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// description
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$out .= theme('cdm_featureTrees', $mergedTrees, $taxon);
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RenderHints::popFromRenderStack();
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return $out;
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}
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/*
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function garland_cichorieae_cdm_descriptionElementTextData($element){
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$description = str_replace("\n", "<br/>", $element->multilanguageText_L10n->text);
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$referenceCitation = '';
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$sourceRefs = '';
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if($element->reference){
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// disabling references for cichorieae description Elements because they all have faulty references
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$referenceCitation = '; '.theme('cdm_fullreference', $element->reference, TRUE);
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}
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//return '<p class="descriptionText">' . $description . $referenceCitation.'</p>';
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foreach($element->sources as $source){
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$referenceCitation = theme('cdm_DescriptionElementSource', $source);
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if($description && strlen($description) > 0 && $referenceCitation ){
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$sourceRefs .= ' ('.$referenceCitation.')' ;
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/*
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* TODO: why does not belongs this code to the cichorieae theme ??
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*
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}else if ($referenceCitation){
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$sourceRefs = $referenceCitation;
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}
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}
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return '<p class="descriptionText">' . $description . $sourceRefs . '</p>';
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}
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*/
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function garland_cichorieae_cdm_descriptionElementTextData($element, $asListElement, $feature_uuid){
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$description = str_replace("\n", "<br/>", $element->multilanguageText_L10n->text);
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$sourceRefs = '';
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$result = array();
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$res_author;
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$res_date;
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$no_links = false;
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$default_theme = variable_get('theme_default', 'garland_cichorieae');
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if (($default_theme == 'flora_malesiana' || $default_theme == 'flore_afrique_centrale')
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&& $element->feature->titleCache == 'Citation'){
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$asListElement = true;
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}elseif ($element->feature->uuid == UUID_CHROMOSOMES_NUMBERS){
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$asListElement = true;
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}else{
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$asListElement = false;
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}
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if ($feature_uuid == UUID_NAME_USAGE || $feature_uuid == UUID_CHROMOSOMES){
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$no_links = true;
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}
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if(is_array($element->sources)){
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foreach($element->sources as $source){
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//initialize some variables
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if ($feature_uuid == UUID_NAME_USAGE){
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$referenceCitation = cdm_ws_get(CDM_WS_NOMENCLATURAL_REFERENCE_CITATION,
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array($source->citation->uuid),
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"microReference=".urlencode($source->citationMicroReference));
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$referenceCitation = $referenceCitation->String;
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}else{
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$referenceCitation = theme('cdm_DescriptionElementSource',
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$source,
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($no_links) ? false : true);
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}
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if($description && strlen($description) > 0 && $referenceCitation ){
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$sourceRefs .= ' ('.$referenceCitation.')' ;
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}else if ($referenceCitation){
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$sourceRefs = $referenceCitation;
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}
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//generate the output
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if(strlen($sourceRefs) > 0){
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$sourceRefs = '<span class="sources">' . $sourceRefs . '</span>';
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}
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if ($source->nameUsedInSource->uuid && ($feature_uuid != UUID_NAME_USAGE)){
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//do a link to name page
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$name_used_in_source_link_to_show = l($source->nameUsedInSource->titleCache,
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path_to_name($source->nameUsedInSource->uuid),
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array(), NULL, NULL, FALSE ,TRUE);
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}else if ($source->nameUsedInSource->uuid && ($feature_uuid == UUID_NAME_USAGE)){
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//do not do link for NAME USAGE feature
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$name_used_in_source_link_to_show = $source->nameUsedInSource->titleCache;
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}else if (strlen($source->nameUsedInSource->originalNameString) > 0){
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//show a text without link
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$name_used_in_source_link_to_show = $source->nameUsedInSource->originalNameString;
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}
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if($asListElement && ($feature_uuid == UUID_NAME_USAGE)){
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$out = '<li class="descriptionText">' . $name_used_in_source_link_to_show;
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//adding ":" if necesary
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if ($name_used_in_source_link_to_show && ($description || $sourceRefs)){
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$out .= ': ';
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}
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$out .= $description . $sourceRefs . theme('cdm_annotations_as_footnotekeys', $element) . '</li>';
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}else if ($asListElement){
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$out = '<li class="descriptionText">' . $name_used_in_source_link_to_show;
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//adding ":" if necesary
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if ($name_used_in_source_link_to_show && ($description || $sourceRefs)){
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$out .= ': ';
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}
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$out .= $description . $sourceRefs . theme('cdm_annotations_as_footnotekeys', $element) . '</li>';
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//special handling for flora malesiana TODO: possible better way to implement this case?
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}else{
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if ($name_used_in_source_link_to_show){
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$name_used_in_source_link_to_show = ' (name in source: '. $name_used_in_source_link_to_show . ')';
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}
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$out = $description . $sourceRefs . $name_used_in_source_link_to_show;
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}
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}
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}
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//if no sources, print the description
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if(!isset($out)) {
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$out = $description;
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}
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//printing annotations footnotes
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$out .= theme('cdm_annotations_as_footnotekeys', $element);
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/*
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if ($feature_uuid == UUID_NAME_USAGE){
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foreach($element->sources as $source){
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$referenceCitation = cdm_ws_get(CDM_WS_NOMENCLATURAL_REFERENCE_CITATION,
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array($source->citation->uuid),
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"microReference=".urlencode($source->citationMicroReference));
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$referenceCitation = $referenceCitation->String;
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if($description && strlen($description) > 0 && $referenceCitation ){
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$sourceRefs .= ' ('.$referenceCitation.')' ;
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}else if ($referenceCitation){
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$sourceRefs = $referenceCitation;
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}
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}
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}else{
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foreach($element->sources as $source){
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$referenceCitation = theme('cdm_DescriptionElementSource',
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$source,
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($feature_uuid == UUID_NAME_USAGE) ? false : true);
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if($description && strlen($description) > 0 && $referenceCitation ){
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$sourceRefs .= ' ('.$referenceCitation.')' ;
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}else if ($referenceCitation){
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$sourceRefs = $referenceCitation;
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}
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}
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}
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if(strlen($sourceRefs) > 0){
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$sourceRefs = '<span class="sources">' . $sourceRefs . '</span>';
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}
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if ($source->nameUsedInSource->uuid && ($feature_uuid != UUID_NAME_USAGE)){
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//do a link to name page
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$name_used_in_source_link_to_show = l($source->nameUsedInSource->titleCache,
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path_to_name($source->nameUsedInSource->uuid),
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array(), NULL, NULL, FALSE ,TRUE);
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}else if ($source->nameUsedInSource->uuid && ($feature_uuid == UUID_NAME_USAGE)){
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//do not do link for NAME USAGE feature
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$name_used_in_source_link_to_show = $source->nameUsedInSource->titleCache;
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}else if (strlen($source->nameUsedInSource->originalNameString) > 0){
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//show a text without link
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$name_used_in_source_link_to_show = $source->nameUsedInSource->originalNameString;
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}
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if($asListElement && ($feature_uuid == UUID_NAME_USAGE)){
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$out = '<li class="descriptionText">' . $name_used_in_source_link_to_show;
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//adding ":" if necesary
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if ($name_used_in_source_link_to_show && ($description || $sourceRefs)){
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$out .= ': ';
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}
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$out .= $description . $sourceRefs . theme('cdm_annotations_as_footnotekeys', $element) . '</li>';
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}else if ($asListElement){
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$out = '<li class="descriptionText">' . $name_used_in_source_link_to_show;
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//adding ":" if necesary
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if ($name_used_in_source_link_to_show && ($description || $sourceRefs)){
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$out .= ': ';
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}
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$out .= $description . $sourceRefs . theme('cdm_annotations_as_footnotekeys', $element) . '</li>';
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//special handling for flora malesiana TODO: possible better way to implement this case?
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}else{
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if ($name_used_in_source_link_to_show){
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$name_used_in_source_link_to_show = ' (name in source: '. $name_used_in_source_link_to_show . ')';
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}
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$out = $description . $sourceRefs . $name_used_in_source_link_to_show;
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$out .= theme('cdm_annotations_as_footnotekeys', $element);
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}
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*/
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// add annotations as footnote key
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//$out .= theme('cdm_annotations_as_footnotekeys', $element); move above
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return $out;
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}
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/**
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* @overrides theme_cdm_taggedtext2html in order to replace t.infr and t.infgen. with '[unranked]'
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*/
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function garland_cichorieae_cdm_taggedtext2html(array &$taggedtxt, $tag = 'span', $glue = ' ', $skiptags = array()){
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$out = '';
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$i = 0;
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foreach($taggedtxt as $tt){
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if(!in_array($tt->type, $skiptags) && strlen($tt->text) > 0){
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$out .= (strlen($out) > 0 && ++$i < count($taggedtxt)? $glue : '').'<'.$tag.' class="'.$tt->type.'">';
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if($tt->type == "rank" && ($tt->text == "t.infr." || $tt->text == "t.infgen.")){
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$out .= t('[unranked]');
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}else{
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$out .= t($tt->text);
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}
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$out .= '</'.$tag.'>';
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}
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}
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return $out;
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}
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function garland_cichorieae_cdm_descriptionElementArray($elementArray, $feature, $glue = '', $sortArray = false, $enclosingHtml = 'ul'){
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$enclosingHtml = 'div';
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$out = '<'.$enclosingHtml.' class="description" id="'.$feature->representation_L10n.'">';
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if($sortArray) sort($elementArray);
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$out .= join($elementArray, $glue);
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$out .= '</'.$enclosingHtml.'>';
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return $out;
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}
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/**
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* all reference links switched of
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*/
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function garland_cichorieae_cdm_nomenclaturalReferenceSTO($referenceSTO, $doLink = FALSE, $cssClass = '', $separator = '<br />' , $enclosingTag = 'li'){
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$doLink = FALSE;
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if(isset($referenceSTO->microReference)){
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// it is a ReferenceTO
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$nomref_citation = theme('cdm_fullreference', $referenceSTO);
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} else {
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// it is ReferenceSTO
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$nomref_citation = $referenceSTO->fullCitation;
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}
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$is_IN_reference = str_beginsWith($nomref_citation, 'in');
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if($doLink){
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$nomref_citation = l($nomref_citation, "/cdm_dataportal/reference/".$referenceSTO->uuid, array(), NULL, NULL, FALSE, TRUE);
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}
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if(!empty($nomref_citation)){
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$nomref_citation = ($is_IN_reference ? ' ':', ') . $nomref_citation;
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}
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return $nomref_citation;
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}
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/***** GARLAND OVERRIDES ******/
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/**
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* Sets the body-tag class attribute.
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*
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* Adds 'sidebar-left', 'sidebar-right' or 'sidebars' classes as needed.
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*/
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function phptemplate_body_class($sidebar_left, $sidebar_right) {
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if ($sidebar_left != '' && $sidebar_right != '') {
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$class = 'sidebars';
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}
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else {
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if ($sidebar_left != '') {
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$class = 'sidebar-left';
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}
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if ($sidebar_right != '') {
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$class = 'sidebar-right';
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}
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}
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if (isset($class)) {
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print ' class="'. $class .'"';
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}
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}
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/**
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* Return a themed breadcrumb trail.
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*
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* @param $breadcrumb
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* An array containing the breadcrumb links.
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* @return a string containing the breadcrumb output.
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*/
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function phptemplate_breadcrumb($breadcrumb) {
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if (!empty($breadcrumb)) {
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return '<div class="breadcrumb">'. implode(' › ', $breadcrumb) .'</div>';
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}
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}
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333
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/**
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* Allow themable wrapping of all comments.
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*/
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function phptemplate_comment_wrapper($content, $type = null) {
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static $node_type;
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if (isset($type)) $node_type = $type;
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339
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340
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if (!$content || $node_type == 'forum') {
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return '<div id="comments">'. $content . '</div>';
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}
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else {
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return '<div id="comments"><h2 class="comments">'. t('Comments') .'</h2>'. $content .'</div>';
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}
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}
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348
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/**
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349
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* Override or insert PHPTemplate variables into the templates.
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*/
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function _phptemplate_variables($hook, $vars) {
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if ($hook == 'page') {
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if ($secondary = menu_secondary_local_tasks()) {
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$output = '<span class="clear"></span>';
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$output .= "<ul class=\"tabs secondary\">\n". $secondary ."</ul>\n";
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$vars['tabs2'] = $output;
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}
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// Hook into color.module
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if (module_exists('color')) {
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_color_page_alter($vars);
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}
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return $vars;
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}
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return array();
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}
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368
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|
369
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/**
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* Returns the rendered local tasks. The default implementation renders
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* them as tabs.
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*
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* @ingroup themeable
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*/
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function phptemplate_menu_local_tasks() {
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$output = '';
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if ($primary = menu_primary_local_tasks()) {
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$output .= "<ul class=\"tabs primary\">\n". $primary ."</ul>\n";
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}
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return $output;
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}
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function garland_cichorieae_get_partDefinition($nameType){
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if($nameType == 'BotanicalName'){
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return array(
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'namePart' => array(
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'name' => true
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),
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'nameAuthorPart' => array(
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'name' => true,
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'authors' => true
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),
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'referencePart' => array(
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'reference' => true,
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'microreference' => true,
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),
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'statusPart' => array(
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'status' => true,
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),
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'descriptionPart' => array(
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'description' => true,
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),
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);
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}
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return false;
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}
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409
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410
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function garland_cichorieae_get_nameRenderTemplate($renderPath){
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411
|
|
412
|
switch($renderPath) {
|
413
|
case 'taxon_page_title':
|
414
|
case 'polytomousKey':
|
415
|
$template = array(
|
416
|
'namePart' => array('#uri'=>true)
|
417
|
);
|
418
|
break;
|
419
|
case 'taxon_page_synonymy':
|
420
|
case 'related_taxon':
|
421
|
$template = array(
|
422
|
'nameAuthorPart' => array('#uri'=>true),
|
423
|
'referencePart' => true,
|
424
|
'statusPart' => true,
|
425
|
'descriptionPart' => true
|
426
|
);
|
427
|
break;
|
428
|
case 'acceptedFor':
|
429
|
$template = array(
|
430
|
'nameAuthorPart' => array('#uri'=>true),
|
431
|
'referencePart' => true
|
432
|
);
|
433
|
break;
|
434
|
case 'typedesignations':
|
435
|
case 'list_of_taxa':
|
436
|
case '#DEFAULT':
|
437
|
$template = array(
|
438
|
'nameAuthorPart' => array('#uri'=>true),
|
439
|
'referencePart' => true
|
440
|
);
|
441
|
}
|
442
|
return $template;
|
443
|
}
|
444
|
|
445
|
/**
|
446
|
*/
|
447
|
function garland_cichorieae_cdm_taxon_list_thumbnails($taxon){
|
448
|
|
449
|
$gallery_name = $taxon->uuid;
|
450
|
|
451
|
$showCaption = variable_get('cdm_dataportal_findtaxa_show_thumbnail_captions', 0);
|
452
|
$prefMimeTypeRegex = 'image:.*';
|
453
|
$prefMediaQuality = '*';
|
454
|
$cols = variable_get('cdm_dataportal_findtaxa_media_cols', 3);
|
455
|
$maxRows = variable_get('cdm_dataportal_findtaxa_media_maxRows', 1);
|
456
|
$maxExtend = variable_get('cdm_dataportal_findtaxa_media_maxextend', 120);
|
457
|
|
458
|
if($showCaption){
|
459
|
$captionElements = array('title', '#uri'=>t('open Image'));
|
460
|
}
|
461
|
|
462
|
$mediaQueryParameters = array("type"=>"ImageFile");
|
463
|
$mediaList = cdm_ws_get(CDM_WS_PORTAL_TAXON_MEDIA, array($taxon->uuid), queryString($mediaQueryParameters));
|
464
|
$out .= theme('cdm_media_gallerie', $mediaList, $gallery_name ,$maxExtend, $cols, $maxRows, $captionElements, 'NORMAL', $galleryLinkUri, null);
|
465
|
|
466
|
return $out;
|
467
|
}
|
468
|
|
469
|
function garland_cichorieae_cdm_feature_name($feature_name){
|
470
|
switch($feature_name){
|
471
|
case "Protologue": return t("Original Publication");
|
472
|
default: return t(ucfirst($feature_name));
|
473
|
}
|
474
|
}
|
475
|
|
476
|
/* ======================== Special functions for subtheme handling ================ */
|
477
|
|
478
|
function sub_theme() {
|
479
|
global $user, $custom_theme;
|
480
|
|
481
|
// Only select the user selected theme if it is available in the
|
482
|
// list of enabled themes.
|
483
|
$theme = $user->theme && $themes[$user->theme]->status ? $user->theme : variable_get('theme_default', 'garland');
|
484
|
|
485
|
// Allow modules to override the present theme... only select custom theme
|
486
|
// if it is available in the list of installed themes.
|
487
|
$theme = $custom_theme && $themes[$custom_theme] ? $custom_theme : $theme;
|
488
|
|
489
|
return $theme;
|
490
|
}
|
491
|
|
492
|
|
493
|
/**
|
494
|
* Return the path to the currently selected sub theme.
|
495
|
*/
|
496
|
function path_to_sub_theme() {
|
497
|
$themes = list_themes();
|
498
|
$theme = sub_theme();
|
499
|
return dirname($themes[$theme]->filename);
|
500
|
}
|