94 |
94 |
$authorteam = $authorteam->titleCache;
|
95 |
95 |
|
96 |
96 |
if(!isset($misapplied[$name])){
|
97 |
|
$misapplied[$name]['out'] =
|
98 |
|
'<span class="misapplied">'
|
99 |
|
.cdm_related_taxon($taxonRelation->fromTaxon, UUID_MISAPPLIED_NAME_FOR).
|
100 |
|
'</span>';
|
|
97 |
// render the first name found as reprensntative for all others
|
|
98 |
$misapplied[$name]['out'] = cdm_related_taxon($taxonRelation->fromTaxon, UUID_MISAPPLIED_NAME_FOR);
|
|
99 |
} else {
|
|
100 |
// we need to add the anchors for all of the other mispplied names not being rendered explicitely.
|
|
101 |
$misapplied[$name]['out'] = uuid_anchor($taxonRelation->fromTaxon->uuid, $misapplied[$name]['out']);
|
|
102 |
|
101 |
103 |
}
|
102 |
104 |
|
103 |
105 |
// collect all authors for this fullname
|
... | ... | |
125 |
127 |
$out .= '<ul class="misapplied">';
|
126 |
128 |
foreach($misapplied as $misapplied_name){
|
127 |
129 |
|
128 |
|
$out .= '<li class="synonym">'.$misapplied_name['out'] . " ";
|
|
130 |
$out .= '<li class="synonym"><span class="misapplied">' . $other_anchors . $misapplied_name['out'] . ' </span>';
|
|
131 |
|
129 |
132 |
if(isset($misapplied_name['authorteam'])){
|
130 |
133 |
// fill authors with the renderedFootnoteKey and sorting 'em
|
131 |
134 |
foreach($misapplied_name['authorteam'] as $authorteam=>&$renderedFootnoteKey) {
|
... | ... | |
207 |
210 |
|
208 |
211 |
// .. well, for sure not as performant as before, but better than nothing.
|
209 |
212 |
$synonym_uuids = array();
|
|
213 |
$misappied_uuids = array();
|
210 |
214 |
foreach($records as $taxon){
|
211 |
|
if($taxon->class != "Taxon"){
|
|
215 |
|
|
216 |
if($taxon->class == "Synonym") {
|
212 |
217 |
if(!array_key_exists($taxon->uuid, $synonym_uuids)){
|
213 |
218 |
$synonym_uuids[$taxon->uuid] = $taxon->uuid;
|
214 |
219 |
}
|
|
220 |
} else if( !_cdm_dataportal_acceptedByCurrentView($taxon) ) {
|
|
221 |
// assuming that it is a misappied name, will be further examined below
|
|
222 |
$misappied_uuids[$taxon->uuid] = $taxon->uuid;
|
215 |
223 |
}
|
|
224 |
|
216 |
225 |
}
|
|
226 |
|
217 |
227 |
// batch service not jet implemented:
|
218 |
228 |
// $table_of_accepted = cdm_ws_property(CDM_WS_PORTAL_TAXON_ACCEPTED, join(',', $synonym_uuids));
|
219 |
229 |
// thus ...
|
220 |
230 |
$table_of_accepted = array();
|
221 |
231 |
|
222 |
|
foreach($synonym_uuids as $synUuid){
|
223 |
|
$table_of_accepted[$synUuid] = cdm_ws_get(CDM_WS_PORTAL_TAXON_ACCEPTED, array($synUuid, $classification_uuid));
|
|
232 |
foreach($synonym_uuids as $relatedUuid){
|
|
233 |
$table_of_accepted[$relatedUuid] = cdm_ws_get(CDM_WS_PORTAL_TAXON_ACCEPTED, array($relatedUuid, $classification_uuid));
|
|
234 |
}
|
|
235 |
|
|
236 |
foreach($misappied_uuids as $relatedUuid){
|
|
237 |
$taxonRelations = cdm_ws_get(CDM_WS_PORTAL_TAXON_RELATIONS, array($relatedUuid));
|
|
238 |
foreach($taxonRelations as $relation) {
|
|
239 |
if($relation->type->uuid == UUID_MISAPPLIED_NAME_FOR && _cdm_dataportal_acceptedByCurrentView($relation->toTaxon)) {
|
|
240 |
$table_of_accepted[$relatedUuid][] = $relation->toTaxon;
|
|
241 |
}
|
|
242 |
}
|
224 |
243 |
}
|
225 |
244 |
|
226 |
245 |
$out = '<ul class="cdm_names" style="background-image: none;">';
|
227 |
246 |
|
228 |
247 |
foreach($records as $taxon){
|
229 |
|
// its a Taxon
|
230 |
|
if($taxon->class == "Taxon"){
|
231 |
|
$taxonUri = url(path_to_taxon($taxon->uuid));
|
232 |
|
if(isset($taxon->name->nomenclaturalReference)){
|
233 |
|
$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid));
|
234 |
|
}
|
235 |
|
$out .= '<li class="Taxon">'.theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri);
|
236 |
|
$out .= theme('cdm_annotations_as_footnotekeys', $taxon);
|
237 |
248 |
|
238 |
|
if($showMedia_taxa){
|
239 |
|
$out .= theme('cdm_taxon_list_thumbnails', $taxon);
|
240 |
|
}
|
241 |
|
$out .= '</li>';
|
242 |
|
} else {
|
243 |
|
// its a synonym
|
244 |
|
$uuid = $taxon->uuid;
|
245 |
|
$acceptedTaxa = $table_of_accepted[$uuid];
|
|
249 |
if( isset($table_of_accepted[$taxon->uuid])) {
|
|
250 |
// its a synonym or misapplied name
|
|
251 |
$is_synonym = isset($synonym_uuids[$taxon->uuid]);
|
|
252 |
$class_name = $is_synonym ? "Synonym" : "misapplied-name";
|
|
253 |
|
|
254 |
$acceptedTaxa = $table_of_accepted[$taxon->uuid];
|
|
255 |
|
246 |
256 |
if(count($acceptedTaxa) == 1){
|
|
257 |
|
247 |
258 |
$acceptedTaxon = $acceptedTaxa[0];
|
248 |
259 |
$taxonUri = uri_to_synonym($taxon->uuid, $acceptedTaxon->uuid, 'synonymy');
|
249 |
260 |
if(isset($acceptedTaxon->name->nomenclaturalReference)){
|
250 |
261 |
$referenceUri = url(path_to_reference($acceptedTaxon->name->nomenclaturalReference->uuid));
|
251 |
262 |
}
|
252 |
|
$out .= '<li class="Synonym">'.theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri);
|
|
263 |
$out .= '<li class="' . $class_name . '">'.theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri);
|
|
264 |
if(!$is_synonym){
|
|
265 |
$out .= '<span class="sensu"> sensu ' . theme('cdm_reference', $taxon->sec) . '</span>';
|
|
266 |
}
|
253 |
267 |
$out .= theme('cdm_annotations_as_footnotekeys', $taxon);
|
254 |
268 |
if($showMedia_synonyms){
|
255 |
269 |
$out .= theme('cdm_taxon_list_thumbnails', $acceptedTaxon);
|
256 |
270 |
}
|
257 |
271 |
$out .= '</li>';
|
|
272 |
|
258 |
273 |
} else {
|
|
274 |
|
259 |
275 |
//TODO avoid using Ajax in the cdm_dynabox .... why?
|
260 |
276 |
//TODO add media
|
261 |
277 |
$out .= cdm_dynabox(
|
... | ... | |
263 |
279 |
cdm_compose_url(CDM_WS_PORTAL_TAXON_ACCEPTED, array($taxon->uuid, $classification_uuid)),
|
264 |
280 |
'cdm_list_of_taxa',
|
265 |
281 |
'Click for accepted taxon');
|
|
282 |
|
266 |
283 |
}
|
|
284 |
} else {
|
|
285 |
// its a Taxon
|
|
286 |
$taxonUri = url(path_to_taxon($taxon->uuid));
|
|
287 |
if(isset($taxon->name->nomenclaturalReference)){
|
|
288 |
$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid));
|
|
289 |
}
|
|
290 |
$out .= '<li class="Taxon">'.theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri);
|
|
291 |
$out .= theme('cdm_annotations_as_footnotekeys', $taxon);
|
|
292 |
|
|
293 |
if($showMedia_taxa){
|
|
294 |
$out .= theme('cdm_taxon_list_thumbnails', $taxon);
|
|
295 |
}
|
|
296 |
$out .= '</li>';
|
267 |
297 |
}
|
268 |
298 |
}
|
269 |
299 |
|
finally fixing #2648 (search for misapplied names implemented)