| 32 |
32 |
require_once('classes/renderhints.php');
|
| 33 |
33 |
|
| 34 |
34 |
function _add_js_progressbar(){
|
| 35 |
|
drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/jquery.progressbar/js/jquery.progressbar.js');
|
|
35 |
drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/jquery.progressbar/js/jquery.progressbar.js');
|
| 36 |
36 |
}
|
| 37 |
37 |
|
| 38 |
38 |
function _add_js_treeselector(){
|
| 39 |
|
//drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/treeselector.js');
|
| 40 |
|
drupal_add_js("
|
| 41 |
|
if (Drupal.jsEnabled) {
|
| 42 |
|
$(document).ready(function() {
|
| 43 |
|
$('#cdm-taxonomictree-selector-form #edit-val').change(function () {
|
| 44 |
|
$('#cdm-taxonomictree-selector-form').submit();
|
| 45 |
|
});
|
| 46 |
|
|
| 47 |
|
});
|
| 48 |
|
}", 'inline');
|
|
39 |
//drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/treeselector.js');
|
|
40 |
drupal_add_js("
|
|
41 |
if (Drupal.jsEnabled) {
|
|
42 |
$(document).ready(function() {
|
|
43 |
$('#cdm-taxonomictree-selector-form #edit-val').change(function () {
|
|
44 |
$('#cdm-taxonomictree-selector-form').submit();
|
|
45 |
});
|
|
46 |
|
|
47 |
});
|
|
48 |
}", 'inline');
|
| 49 |
49 |
}
|
| 50 |
50 |
|
| 51 |
51 |
function _add_js_openlayers_map(){
|
| 52 |
52 |
|
| 53 |
|
drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/OpenLayers/OpenLayers.js', 'core', 'header');
|
| 54 |
|
drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/openlayers_map.js');
|
| 55 |
|
|
| 56 |
|
$gmap_api_key = variable_get('gmap_api_key', 'ABQIAAAAFho6eHAcUOTHLmH9IYHAeBRi_j0U6kJrkFvY4-OX2XYmEAa76BTsyMmEq-tn6nFNtD2UdEGvfhvoCQ');
|
| 57 |
|
|
| 58 |
|
$baseLayers = variable_get('baselayers', array());
|
| 59 |
|
if(!is_array($baseLayers) || count($baseLayers) == 0){
|
| 60 |
|
$baseLayers = array('metacarta_vmap0' => 'Metacarta Vmap0', 'PREFERRED' => 'metacarta_vmap0');
|
| 61 |
|
}
|
| 62 |
|
$layerNames = '';
|
| 63 |
|
foreach($baseLayers as $layerName => $layerLabel){
|
| 64 |
|
if($layerName == 'PREFERRED'){
|
| 65 |
|
$preferredLayer = $baseLayers['PREFERRED'];
|
| 66 |
|
} else {
|
| 67 |
|
$layerNames .= ($layerNames ? ', ': '') . "'$layerName'";
|
| 68 |
|
}
|
| 69 |
|
}
|
| 70 |
|
|
| 71 |
|
if( isset($baseLayers['gmap']) || isset($baseLayers['gsat']) || isset($baseLayers['ghyb']) ){
|
| 72 |
|
drupal_set_html_head('<script src=http://maps.google.com/maps?file=api&v=2&sensor=false&key='.$gmap_api_key.'" type="text/javascript"></script>');
|
| 73 |
|
drupal_set_html_head('<script src="http://dev.virtualearth.net/mapcontrol/mapcontrol.ashx?v=6.1" type="text/javascript"></script>');
|
| 74 |
|
}
|
| 75 |
|
|
| 76 |
|
drupal_add_js("
|
|
53 |
drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/OpenLayers/OpenLayers.js', 'core', 'header');
|
|
54 |
drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/openlayers_map.js');
|
|
55 |
|
|
56 |
$gmap_api_key = variable_get('gmap_api_key', 'ABQIAAAAFho6eHAcUOTHLmH9IYHAeBRi_j0U6kJrkFvY4-OX2XYmEAa76BTsyMmEq-tn6nFNtD2UdEGvfhvoCQ');
|
|
57 |
|
|
58 |
$baseLayers = variable_get('baselayers', array());
|
|
59 |
if(!is_array($baseLayers) || count($baseLayers) == 0){
|
|
60 |
$baseLayers = array('metacarta_vmap0' => 'Metacarta Vmap0', 'PREFERRED' => 'metacarta_vmap0');
|
|
61 |
}
|
|
62 |
$layerNames = '';
|
|
63 |
foreach($baseLayers as $layerName => $layerLabel){
|
|
64 |
if($layerName == 'PREFERRED'){
|
|
65 |
$preferredLayer = $baseLayers['PREFERRED'];
|
|
66 |
} else {
|
|
67 |
$layerNames .= ($layerNames ? ', ': '') . "'$layerName'";
|
|
68 |
}
|
|
69 |
}
|
|
70 |
|
|
71 |
if( isset($baseLayers['gmap']) || isset($baseLayers['gsat']) || isset($baseLayers['ghyb']) ){
|
|
72 |
drupal_set_html_head('<script src=http://maps.google.com/maps?file=api&v=2&sensor=false&key='.$gmap_api_key.'" type="text/javascript"></script>');
|
|
73 |
drupal_set_html_head('<script src="http://dev.virtualearth.net/mapcontrol/mapcontrol.ashx?v=6.1" type="text/javascript"></script>');
|
|
74 |
}
|
|
75 |
|
|
76 |
drupal_add_js("
|
| 77 |
77 |
if (Drupal.jsEnabled) {
|
| 78 |
78 |
$(document).ready(function() {
|
| 79 |
79 |
$('#openlayers_map').cdm_openlayers_map('"
|
| ... | ... | |
| 95 |
95 |
|
| 96 |
96 |
function get_openlayers_map($width, $occurrenceQuery = false, $distributionQuery = false, $legendFormatQuery = false, $map_caption = false ){
|
| 97 |
97 |
|
| 98 |
|
_add_js_openlayers_map();
|
| 99 |
|
|
| 100 |
|
$out = '<div id="openlayers">';
|
| 101 |
|
$out .= '<div id="openlayers_map" class="smallmap"';
|
| 102 |
|
$out .= ' style="width: ' . $width . 'px; height:'.( $width / 2).'px"';
|
| 103 |
|
if($occurrenceQuery){
|
| 104 |
|
|
| 105 |
|
//fix $occurrenceQuery
|
| 106 |
|
$occurrenceQuery .= '&ms=400,350';
|
| 107 |
|
$occurrenceQuery .= '&l=v%3Aatbi%2Ce_w_0';
|
| 108 |
|
$occurrenceQuery .= '&legend=0'; //TODO add to cdm service?
|
| 109 |
|
|
| 110 |
|
$out .= ' occurrenceQuery="'.$occurrenceQuery.'"';
|
| 111 |
|
}
|
| 112 |
|
if($distributionQuery){
|
| 113 |
|
$out .= ' distributionQuery="'.$distributionQuery.'"';
|
| 114 |
|
}
|
| 115 |
|
if($legendFormatQuery){
|
| 116 |
|
$out .= ' legendFormatQuery="'.$legendFormatQuery.'"';
|
| 117 |
|
}
|
| 118 |
|
$out .= '></div></div>';
|
| 119 |
|
|
| 120 |
|
// showing map caption
|
| 121 |
|
if($map_caption){
|
| 122 |
|
$out .= '<div class="distribution_map_caption">' . $map_caption . '</div>' . '<br />'; //FIXME: replace <br> by according css style
|
| 123 |
|
$out .= '</div>';
|
| 124 |
|
}
|
| 125 |
|
return $out;
|
|
98 |
_add_js_openlayers_map();
|
|
99 |
|
|
100 |
$out = '<div id="openlayers">';
|
|
101 |
$out .= '<div id="openlayers_map" class="smallmap"';
|
|
102 |
$out .= ' style="width: ' . $width . 'px; height:'.( $width / 2).'px"';
|
|
103 |
if($occurrenceQuery){
|
|
104 |
|
|
105 |
//fix $occurrenceQuery
|
|
106 |
$occurrenceQuery .= '&ms=400,350';
|
|
107 |
$occurrenceQuery .= '&l=v%3Aatbi%2Ce_w_0';
|
|
108 |
$occurrenceQuery .= '&legend=0'; //TODO add to cdm service?
|
|
109 |
|
|
110 |
$out .= ' occurrenceQuery="'.$occurrenceQuery.'"';
|
|
111 |
}
|
|
112 |
if($distributionQuery){
|
|
113 |
$out .= ' distributionQuery="'.$distributionQuery.'"';
|
|
114 |
}
|
|
115 |
if($legendFormatQuery){
|
|
116 |
$out .= ' legendFormatQuery="'.$legendFormatQuery.'"';
|
|
117 |
}
|
|
118 |
$out .= '></div></div>';
|
|
119 |
|
|
120 |
// showing map caption
|
|
121 |
if($map_caption){
|
|
122 |
$out .= '<div class="distribution_map_caption">' . $map_caption . '</div>' . '<br />'; //FIXME: replace <br> by according css style
|
|
123 |
$out .= '</div>';
|
|
124 |
}
|
|
125 |
return $out;
|
| 126 |
126 |
}
|
| 127 |
127 |
|
| 128 |
128 |
/* ====================== hook implementations ====================== */
|
| ... | ... | |
| 135 |
135 |
* @return array An array of valid permissions for the portfolio module
|
| 136 |
136 |
*/
|
| 137 |
137 |
function cdm_dataportal_perm() {
|
| 138 |
|
return array(
|
| 139 |
|
'administer cdm_dataportal',
|
|
138 |
return array(
|
|
139 |
'administer cdm_dataportal',
|
| 140 |
140 |
'cdm_dataportal view notes',
|
| 141 |
|
//TODO which else permission are required? -> check the WP6 requirements document
|
| 142 |
|
);
|
|
141 |
//TODO which else permission are required? -> check the WP6 requirements document
|
|
142 |
);
|
| 143 |
143 |
}
|
| 144 |
144 |
|
| 145 |
145 |
|
| ... | ... | |
| 147 |
147 |
* Implementation of hook_menu()
|
| 148 |
148 |
*/
|
| 149 |
149 |
function cdm_dataportal_menu($may_cache) {
|
| 150 |
|
$items = array();
|
|
150 |
$items = array();
|
| 151 |
151 |
|
| 152 |
|
cdm_dataportal_menu_admin($may_cache, $items);
|
| 153 |
|
cdm_dataportal_menu_help($may_cache, $items);
|
|
152 |
cdm_dataportal_menu_admin($may_cache, $items);
|
|
153 |
cdm_dataportal_menu_help($may_cache, $items);
|
| 154 |
154 |
|
| 155 |
|
if ($may_cache) {
|
|
155 |
if ($may_cache) {
|
| 156 |
156 |
|
| 157 |
|
$items[] = array(
|
| 158 |
|
'path' => 'cdm_dataportal/names',
|
| 159 |
|
'callback' => 'cdm_dataportal_view_names',
|
| 160 |
|
'access' => true,
|
| 161 |
|
'type' => MENU_CALLBACK,
|
| 162 |
|
);
|
| 163 |
|
// optional callback arguments: page
|
|
157 |
$items[] = array(
|
|
158 |
'path' => 'cdm_dataportal/names',
|
|
159 |
'callback' => 'cdm_dataportal_view_names',
|
|
160 |
'access' => true,
|
|
161 |
'type' => MENU_CALLBACK,
|
|
162 |
);
|
|
163 |
// optional callback arguments: page
|
| 164 |
164 |
|
| 165 |
|
$items[] = array(
|
|
165 |
$items[] = array(
|
| 166 |
166 |
'path' => 'cdm_dataportal/taxon',
|
| 167 |
167 |
'callback' => 'cdm_dataportal_taxon_page_view',
|
| 168 |
168 |
'access' => true,
|
| 169 |
169 |
'type' => MENU_CALLBACK,
|
| 170 |
|
// expected callback arguments: uuid
|
| 171 |
|
);
|
|
170 |
// expected callback arguments: uuid
|
|
171 |
);
|
| 172 |
172 |
|
| 173 |
|
$items[] = array(
|
|
173 |
$items[] = array(
|
| 174 |
174 |
'path' => 'cdm_dataportal/name',
|
| 175 |
175 |
'callback' => 'cdm_dataportal_name_page_view',
|
| 176 |
176 |
'access' => true,
|
| 177 |
177 |
'type' => MENU_CALLBACK,
|
| 178 |
|
// expected callback arguments: uuid
|
| 179 |
|
);
|
|
178 |
// expected callback arguments: uuid
|
|
179 |
);
|
| 180 |
180 |
|
| 181 |
|
$items[] = array(
|
|
181 |
$items[] = array(
|
| 182 |
182 |
'path' => 'cdm_dataportal/reference',
|
| 183 |
183 |
'callback' => 'cdm_dataportal_view_reference',
|
| 184 |
184 |
'access' => true,
|
| 185 |
185 |
'type' => MENU_CALLBACK,
|
| 186 |
|
// expected callback arguments: uuid
|
| 187 |
|
);
|
|
186 |
// expected callback arguments: uuid
|
|
187 |
);
|
| 188 |
188 |
|
| 189 |
|
$items[] = array(
|
|
189 |
$items[] = array(
|
| 190 |
190 |
'path' => 'cdm_dataportal/reference/list',
|
| 191 |
191 |
'callback' => 'cdm_dataportal_view_reference_list',
|
| 192 |
192 |
'access' => true,
|
| 193 |
193 |
'type' => MENU_CALLBACK,
|
| 194 |
|
// expected callback arguments: uuid
|
| 195 |
|
);
|
|
194 |
// expected callback arguments: uuid
|
|
195 |
);
|
| 196 |
196 |
|
| 197 |
|
$items[] = array(
|
|
197 |
$items[] = array(
|
| 198 |
198 |
'path' => 'cdm_dataportal/media',
|
| 199 |
199 |
'callback' => 'cdm_dataportal_view_media',
|
| 200 |
200 |
'access' => true,
|
| 201 |
201 |
'type' => MENU_CALLBACK,
|
| 202 |
|
// expected callback arguments: uuid, mediarepresentation_uuid, part_uuid or part#
|
| 203 |
|
);
|
|
202 |
// expected callback arguments: uuid, mediarepresentation_uuid, part_uuid or part#
|
|
203 |
);
|
| 204 |
204 |
|
| 205 |
|
$items[] = array(
|
|
205 |
$items[] = array(
|
| 206 |
206 |
'path' => 'cdm_dataportal/polytomousKey',
|
| 207 |
207 |
'callback' => 'cdm_dataportal_view_polytomousKey',
|
| 208 |
208 |
'access' => true,
|
| ... | ... | |
| 210 |
210 |
// expected callback arguments: polytomousKey->uuid
|
| 211 |
211 |
);
|
| 212 |
212 |
|
| 213 |
|
$items[] = array(
|
|
213 |
$items[] = array(
|
| 214 |
214 |
'path' => 'cdm_dataportal/search',
|
| 215 |
215 |
'callback' => 'cdm_dataportal_view_search_advanced',
|
| 216 |
216 |
'access' => true,
|
| 217 |
217 |
'type' => MENU_CALLBACK,
|
| 218 |
|
);
|
|
218 |
);
|
| 219 |
219 |
|
| 220 |
|
$items[] = array(
|
|
220 |
$items[] = array(
|
| 221 |
221 |
'path' => 'cdm_dataportal/search/taxon',
|
| 222 |
222 |
'callback' => 'cdm_dataportal_view_search_taxon',
|
| 223 |
223 |
'access' => true,
|
| 224 |
224 |
'type' => MENU_CALLBACK,
|
| 225 |
|
);
|
|
225 |
);
|
| 226 |
226 |
|
| 227 |
|
$items[] = array(
|
|
227 |
$items[] = array(
|
| 228 |
228 |
'path' => 'cdm/xml2json',
|
| 229 |
229 |
'callback' => 'cdm_view_xml2json',
|
| 230 |
230 |
'access' => true,
|
| 231 |
231 |
'type' => MENU_CALLBACK,
|
| 232 |
|
);
|
|
232 |
);
|
| 233 |
233 |
|
| 234 |
|
}elseif (arg(0)=='user' && ($uid=arg(1)) && is_numeric($uid)) {
|
| 235 |
|
//user configuration of cdm_dataportal
|
| 236 |
|
$items[] = array('path' => 'user/'.$uid.'/cdm_dataportal',
|
|
234 |
}elseif (arg(0)=='user' && ($uid=arg(1)) && is_numeric($uid)) {
|
|
235 |
//user configuration of cdm_dataportal
|
|
236 |
$items[] = array('path' => 'user/'.$uid.'/cdm_dataportal',
|
| 237 |
237 |
'title' => t('cdm_dataportal'),
|
| 238 |
238 |
'access' => TRUE,
|
| 239 |
239 |
'callback' => 'drupal_get_form',
|
| ... | ... | |
| 241 |
241 |
'type' => MENU_LOCAL_TASK,
|
| 242 |
242 |
'weight' => 10,
|
| 243 |
243 |
);
|
| 244 |
|
} else {
|
| 245 |
|
// may not cache
|
| 246 |
|
// --- local tasks for Taxon
|
| 247 |
|
$items[] = array(
|
|
244 |
} else {
|
|
245 |
// may not cache
|
|
246 |
// --- local tasks for Taxon
|
|
247 |
$items[] = array(
|
| 248 |
248 |
'path' => 'cdm_dataportal/name/'.arg(2),
|
| 249 |
|
//'callback' => 'cdm_dataportal_view_name',
|
| 250 |
|
'callback' => 'cdm_dataportal_name_page_view',
|
|
249 |
//'callback' => 'cdm_dataportal_view_name',
|
|
250 |
'callback' => 'cdm_dataportal_name_page_view',
|
| 251 |
251 |
'callback arguments' => array(arg(2), arg(3), arg(4)),
|
| 252 |
252 |
'access' => true,
|
| 253 |
253 |
'type' => MENU_CALLBACK,
|
| 254 |
|
);
|
|
254 |
);
|
| 255 |
255 |
|
| 256 |
|
if(variable_get('cdm_dataportal_taxonpage_tabs', 1)) {
|
|
256 |
if(variable_get('cdm_dataportal_taxonpage_tabs', 1)) {
|
| 257 |
257 |
|
| 258 |
|
$items[] = array(
|
|
258 |
$items[] = array(
|
| 259 |
259 |
'path' => 'cdm_dataportal/taxon/'.arg(2),
|
| 260 |
260 |
'title' => theme('cdm_taxonpage_tab', 'General'),
|
| 261 |
261 |
'callback' => 'cdm_dataportal_taxon_page_view',
|
| ... | ... | |
| 263 |
263 |
'type' => MENU_CALLBACK,
|
| 264 |
264 |
'weight' => 1,
|
| 265 |
265 |
'callback arguments' => array(arg(2), "description")
|
| 266 |
|
// expected callback arguments: name_uuid
|
| 267 |
|
);
|
|
266 |
// expected callback arguments: name_uuid
|
|
267 |
);
|
| 268 |
268 |
|
| 269 |
|
$items[] = array(
|
|
269 |
$items[] = array(
|
| 270 |
270 |
'path' => 'cdm_dataportal/taxon/'.arg(2).'/all',
|
| 271 |
271 |
'title' => theme('cdm_taxonpage_tab', 'General'),
|
| 272 |
272 |
'callback' => 'cdm_dataportal_taxon_page_view',
|
| ... | ... | |
| 274 |
274 |
'type' => MENU_CALLBACK,
|
| 275 |
275 |
'weight' => 2,
|
| 276 |
276 |
'callback arguments' => array(arg(2), "all")
|
| 277 |
|
// expected callback arguments: name_uuid
|
| 278 |
|
);
|
|
277 |
// expected callback arguments: name_uuid
|
|
278 |
);
|
| 279 |
279 |
|
| 280 |
|
$items[] = array(
|
|
280 |
$items[] = array(
|
| 281 |
281 |
'path' => 'cdm_dataportal/taxon/'.arg(2).'/description',
|
| 282 |
282 |
'title' => theme('cdm_taxonpage_tab', 'General'),
|
| 283 |
283 |
'callback' => 'cdm_dataportal_taxon_page_view',
|
| ... | ... | |
| 285 |
285 |
'type' => MENU_DEFAULT_LOCAL_TASK,
|
| 286 |
286 |
'weight' => 2,
|
| 287 |
287 |
'callback arguments' => array(arg(2), "description")
|
| 288 |
|
// expected callback arguments: name_uuid
|
| 289 |
|
);
|
|
288 |
// expected callback arguments: name_uuid
|
|
289 |
);
|
| 290 |
290 |
|
| 291 |
|
$items[] = array(
|
|
291 |
$items[] = array(
|
| 292 |
292 |
'path' => 'cdm_dataportal/taxon/'.arg(2).'/synonymy',
|
| 293 |
293 |
'title' => theme('cdm_taxonpage_tab', 'Synonymy'),
|
| 294 |
294 |
'callback' => 'cdm_dataportal_taxon_page_view',
|
| ... | ... | |
| 296 |
296 |
'type' => MENU_LOCAL_TASK,
|
| 297 |
297 |
'weight' => 4,
|
| 298 |
298 |
'callback arguments' => array(arg(2), "synonymy", arg(4))
|
| 299 |
|
// expected callback arguments: name_uuid
|
| 300 |
|
);
|
| 301 |
|
$items[] = array(
|
|
299 |
// expected callback arguments: name_uuid
|
|
300 |
);
|
|
301 |
$items[] = array(
|
| 302 |
302 |
'path' => 'cdm_dataportal/taxon/'.arg(2).'/images',
|
| 303 |
303 |
'title' => theme('cdm_taxonpage_tab', 'Images'),
|
| 304 |
304 |
'callback' => 'cdm_dataportal_taxon_page_view',
|
| ... | ... | |
| 306 |
306 |
'type' => MENU_LOCAL_TASK,
|
| 307 |
307 |
'weight' => 5,
|
| 308 |
308 |
'callback arguments' => array(arg(2), "images")
|
| 309 |
|
// expected callback arguments: name_uuid
|
| 310 |
|
);
|
| 311 |
|
|
| 312 |
|
$items[] = array(
|
| 313 |
|
'path' => 'cdm_dataportal/taxon/'.arg(2).'/specimens',
|
| 314 |
|
'title' => theme('cdm_taxonpage_tab', 'Specimens'),
|
| 315 |
|
'callback' => 'cdm_dataportal_taxon_page_view',
|
| 316 |
|
'access' => true,
|
| 317 |
|
'type' => MENU_LOCAL_TASK,
|
| 318 |
|
'weight' => 6,
|
| 319 |
|
'callback arguments' => array(arg(2), "specimens")
|
| 320 |
|
// expected callback arguments: name_uuid
|
| 321 |
|
);
|
| 322 |
|
|
| 323 |
|
$items[] = array(
|
|
309 |
// expected callback arguments: name_uuid
|
|
310 |
);
|
|
311 |
|
|
312 |
$items[] = array(
|
|
313 |
'path' => 'cdm_dataportal/taxon/'.arg(2).'/specimens',
|
|
314 |
'title' => theme('cdm_taxonpage_tab', 'Specimens'),
|
|
315 |
'callback' => 'cdm_dataportal_taxon_page_view',
|
|
316 |
'access' => true,
|
|
317 |
'type' => MENU_LOCAL_TASK,
|
|
318 |
'weight' => 6,
|
|
319 |
'callback arguments' => array(arg(2), "specimens")
|
|
320 |
// expected callback arguments: name_uuid
|
|
321 |
);
|
|
322 |
|
|
323 |
$items[] = array(
|
| 324 |
324 |
'path' => 'cdm_dataportal/taxon/'.arg(2).'/keys',
|
| 325 |
325 |
'title' => theme('cdm_taxonpage_tab', 'Keys'),
|
| 326 |
326 |
'callback' => 'cdm_dataportal_taxon_page_view',
|
| ... | ... | |
| 330 |
330 |
'callback arguments' => array(arg(2), "keys")
|
| 331 |
331 |
// expected callback arguments: name_uuid
|
| 332 |
332 |
);
|
| 333 |
|
}
|
| 334 |
|
}
|
|
333 |
}
|
|
334 |
}
|
| 335 |
335 |
|
| 336 |
|
drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/cdm_dataportal.css');
|
| 337 |
|
//drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/cdm_dataportal_print.css', 'print');
|
| 338 |
|
drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/cdm_dataportal_screen.css', 'screen');
|
|
336 |
drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/cdm_dataportal.css');
|
|
337 |
//drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/cdm_dataportal_print.css', 'print');
|
|
338 |
drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/cdm_dataportal_screen.css', 'screen');
|
| 339 |
339 |
|
| 340 |
|
return $items;
|
|
340 |
return $items;
|
| 341 |
341 |
|
| 342 |
342 |
}
|
| 343 |
343 |
/**
|
| ... | ... | |
| 345 |
345 |
*/
|
| 346 |
346 |
function cdm_dataportal_user_form() {
|
| 347 |
347 |
|
| 348 |
|
global $user;
|
|
348 |
global $user;
|
| 349 |
349 |
$checkbox_value = 'cdm_dataportal_' .$user->uid . '_default_tab_active';
|
| 350 |
350 |
|
| 351 |
|
$form['check'] = array
|
|
351 |
$form['check'] = array
|
| 352 |
352 |
(
|
| 353 |
353 |
'#type' => 'checkbox',
|
| 354 |
354 |
'#title' => t('Activate user default configuration'),
|
| ... | ... | |
| 356 |
356 |
'#description' => t('Check this if you want configure your own default tab from the below menu.')
|
| 357 |
357 |
);
|
| 358 |
358 |
|
| 359 |
|
$form['cdm_dataportal_user_form'] = array(
|
|
359 |
$form['cdm_dataportal_user_form'] = array(
|
| 360 |
360 |
'#type' => 'select',
|
| 361 |
361 |
'#title' => t('Default tab to display'),
|
| 362 |
|
'#default_value' => get_default_taxon_tab(true),
|
|
362 |
'#default_value' => get_default_taxon_tab(true),
|
| 363 |
363 |
'#options' => unserialize(CDM_DATAPORTAL_DEFAULT_TAXON_TAB),
|
| 364 |
364 |
'#description' => t('<p>Select the default tab to display when visiting a taxon page. Only available if Tabbed Taxon Page is enable.</p>
|
| 365 |
365 |
<strong>Note:</strong> After performing a search and clicking in any synonym, the taxon tab
|
| 366 |
366 |
to be renderized will be the synonymy of the accepted taxon and not the above selected tab.'),
|
| 367 |
|
);
|
|
367 |
);
|
| 368 |
368 |
|
| 369 |
|
$form['submit'] = array(
|
| 370 |
|
'#type' => 'submit',
|
| 371 |
|
'#value' => t('Submit')
|
| 372 |
|
);
|
|
369 |
$form['submit'] = array(
|
|
370 |
'#type' => 'submit',
|
|
371 |
'#value' => t('Submit')
|
|
372 |
);
|
| 373 |
373 |
|
| 374 |
|
return $form;
|
|
374 |
return $form;
|
| 375 |
375 |
}
|
| 376 |
376 |
|
| 377 |
377 |
/**
|
| ... | ... | |
| 380 |
380 |
* @param unknown_type $form_values
|
| 381 |
381 |
*/
|
| 382 |
382 |
function cdm_dataportal_user_form_submit($form, $form_values) {
|
| 383 |
|
global $user;
|
| 384 |
|
$msg_type = 'status';
|
| 385 |
|
$username = $user->name;
|
| 386 |
|
$variable_to_use = 'cdm_dataportal_' .$user->uid . '_default_tab';
|
| 387 |
|
|
| 388 |
|
//if is the right user the variables are setted
|
| 389 |
|
if (arg(0)=='user' && ($uid=arg(1)) && is_numeric($uid) && $user->uid==$uid){
|
| 390 |
|
$variable = unserialize(CDM_DATAPORTAL_DEFAULT_TAXON_TAB);
|
| 391 |
|
variable_set($variable_to_use . '_active', $form_values['check']);
|
| 392 |
|
variable_set($variable_to_use, $form_values['cdm_dataportal_user_form']);
|
| 393 |
|
if ($form_values['check']){
|
| 394 |
|
drupal_set_message('The user default tab will be used for the next taxon site visit.');
|
| 395 |
|
drupal_set_message('The user default tab have been changed to: '
|
|
383 |
global $user;
|
|
384 |
$msg_type = 'status';
|
|
385 |
$username = $user->name;
|
|
386 |
$variable_to_use = 'cdm_dataportal_' .$user->uid . '_default_tab';
|
|
387 |
|
|
388 |
//if is the right user the variables are setted
|
|
389 |
if (arg(0)=='user' && ($uid=arg(1)) && is_numeric($uid) && $user->uid==$uid){
|
|
390 |
$variable = unserialize(CDM_DATAPORTAL_DEFAULT_TAXON_TAB);
|
|
391 |
variable_set($variable_to_use . '_active', $form_values['check']);
|
|
392 |
variable_set($variable_to_use, $form_values['cdm_dataportal_user_form']);
|
|
393 |
if ($form_values['check']){
|
|
394 |
drupal_set_message('The user default tab will be used for the next taxon site visit.');
|
|
395 |
drupal_set_message('The user default tab have been changed to: '
|
| 396 |
396 |
. $variable[variable_get($variable_to_use, 0)]
|
| 397 |
397 |
. ' for the user ' . $username, $msg_type);
|
| 398 |
|
}else{
|
| 399 |
|
drupal_set_message('The user default tab wont be used for the next taxon site, check the box if you want to use the user default configuration.');
|
| 400 |
|
}
|
| 401 |
|
//problem with the user id => variables wont be saved
|
| 402 |
|
}else{
|
| 403 |
|
$msg_type = 'warning';
|
| 404 |
|
drupal_set_message('Default tab have not been saved due to user id problems', $msg_type);
|
| 405 |
|
}
|
|
398 |
}else{
|
|
399 |
drupal_set_message('The user default tab wont be used for the next taxon site, check the box if you want to use the user default configuration.');
|
|
400 |
}
|
|
401 |
//problem with the user id => variables wont be saved
|
|
402 |
}else{
|
|
403 |
$msg_type = 'warning';
|
|
404 |
drupal_set_message('Default tab have not been saved due to user id problems', $msg_type);
|
|
405 |
}
|
| 406 |
406 |
}
|
| 407 |
407 |
|
| 408 |
408 |
/**
|
| ... | ... | |
| 415 |
415 |
* @param int $delta
|
| 416 |
416 |
*/
|
| 417 |
417 |
function cdm_dataportal_block($op='list', $delta=0) {
|
| 418 |
|
// listing of blocks, such as on the admin/block page
|
| 419 |
|
if ($op == "list") {
|
| 420 |
|
//$block[0]["info"] = t("CDM DataPortal DevLinks");
|
| 421 |
|
// $block[1]["info"] = t("CDM DataPortal Credits");
|
| 422 |
|
$block[2]["info"] = t("CDM Search Taxa");
|
| 423 |
|
//$block[3]["info"] = t("CDM Filters");
|
| 424 |
|
$block[4]["info"] = t("CDM Dataportal Print");
|
| 425 |
|
$block["keys"]["info"] = t("CDM identification keys");
|
| 426 |
|
return $block;
|
| 427 |
|
}
|
| 428 |
|
else if ($op == 'view') {
|
| 429 |
|
switch($delta){
|
| 430 |
|
// case 1:
|
| 431 |
|
// $block['subject'] = t('Credits');
|
| 432 |
|
// $block['content'] = theme('cdm_credits');
|
| 433 |
|
// return $block;
|
| 434 |
|
case 2:
|
| 435 |
|
$block['subject'] = t('Search taxa');
|
| 436 |
|
$block['content'] = drupal_get_form('cdm_dataportal_search_taxon_form');
|
| 437 |
|
if (variable_get('cdm_dataportal_show_advanced_search', 1)){
|
| 438 |
|
$block['content'] .= '<div>'.l('Advanced Search', '/cdm_dataportal/search').'</div>';
|
| 439 |
|
}
|
| 440 |
|
return $block;
|
| 441 |
|
case 4:
|
| 442 |
|
$block['subject'] = t('<none>');
|
| 443 |
|
$block['content'] = theme('cdm_print_button');;
|
| 444 |
|
return $block;
|
| 445 |
|
case "keys":
|
| 446 |
|
$block['subject'] = t('Identification Keys');
|
|
418 |
// listing of blocks, such as on the admin/block page
|
|
419 |
if ($op == "list") {
|
|
420 |
//$block[0]["info"] = t("CDM DataPortal DevLinks");
|
|
421 |
// $block[1]["info"] = t("CDM DataPortal Credits");
|
|
422 |
$block[2]["info"] = t("CDM Search Taxa");
|
|
423 |
//$block[3]["info"] = t("CDM Filters");
|
|
424 |
$block[4]["info"] = t("CDM Dataportal Print");
|
|
425 |
$block["keys"]["info"] = t("CDM identification keys");
|
|
426 |
return $block;
|
|
427 |
}
|
|
428 |
else if ($op == 'view') {
|
|
429 |
switch($delta){
|
|
430 |
// case 1:
|
|
431 |
// $block['subject'] = t('Credits');
|
|
432 |
// $block['content'] = theme('cdm_credits');
|
|
433 |
// return $block;
|
|
434 |
case 2:
|
|
435 |
$block['subject'] = t('Search taxa');
|
|
436 |
$block['content'] = drupal_get_form('cdm_dataportal_search_taxon_form');
|
|
437 |
if (variable_get('cdm_dataportal_show_advanced_search', 1)){
|
|
438 |
$block['content'] .= '<div>'.l('Advanced Search', '/cdm_dataportal/search').'</div>';
|
|
439 |
}
|
|
440 |
return $block;
|
|
441 |
case 4:
|
|
442 |
$block['subject'] = t('<none>');
|
|
443 |
$block['content'] = theme('cdm_print_button');;
|
|
444 |
return $block;
|
|
445 |
case "keys":
|
|
446 |
$block['subject'] = t('Identification Keys');
|
| 447 |
447 |
$block['content'] = theme('cdm_block_IdentificationKeys');
|
| 448 |
448 |
return $block;
|
| 449 |
|
}
|
| 450 |
|
}
|
|
449 |
}
|
|
450 |
}
|
| 451 |
451 |
}
|
| 452 |
452 |
|
| 453 |
453 |
|
| ... | ... | |
| 472 |
472 |
|
| 473 |
473 |
function cdm_dataportal_search_taxon_form($advancedForm = false){
|
| 474 |
474 |
|
| 475 |
|
$preset_query = (isset($_SESSION['cdm']['search']['query']) ? $_SESSION['cdm']['search']['query'] : '');
|
| 476 |
|
$preset_doTaxa = (isset($_SESSION['cdm']['search']['doTaxa']) ? 1 : 0);
|
| 477 |
|
$preset_doSynonyms = (isset($_SESSION['cdm']['search']['doSynonyms']) ? 1 : 0);
|
| 478 |
|
$preset_doTaxaByCommonNames = (isset($_SESSION['cdm']['search']['doTaxaByCommonNames']) ? 1 : 0);
|
| 479 |
|
$tdwg_level_select = (isset($_SESSION['cdm']['search']['tdwg_level_select']) ? $_SESSION['cdm']['search']['tdwg_level_select'] : 2);
|
| 480 |
|
$selected_areas = (isset($_SESSION['cdm']['search']['area']) ? $_SESSION['cdm']['search']['area'] : false);
|
|
475 |
$preset_query = (isset($_SESSION['cdm']['search']['query']) ? $_SESSION['cdm']['search']['query'] : '');
|
|
476 |
$preset_doTaxa = (isset($_SESSION['cdm']['search']['doTaxa']) ? 1 : 0);
|
|
477 |
$preset_doSynonyms = (isset($_SESSION['cdm']['search']['doSynonyms']) ? 1 : 0);
|
|
478 |
$preset_doTaxaByCommonNames = (isset($_SESSION['cdm']['search']['doTaxaByCommonNames']) ? 1 : 0);
|
|
479 |
$tdwg_level_select = (isset($_SESSION['cdm']['search']['tdwg_level_select']) ? $_SESSION['cdm']['search']['tdwg_level_select'] : 2);
|
|
480 |
$selected_areas = (isset($_SESSION['cdm']['search']['area']) ? $_SESSION['cdm']['search']['area'] : false);
|
| 481 |
481 |
|
| 482 |
|
$url = 'cdm_dataportal/search/taxon';
|
| 483 |
|
$form['#method'] = 'get';
|
| 484 |
|
$form['#process'] = array('cdm_dataportal_search_process' => array());
|
| 485 |
|
$form['#action'] = url($url, NULL, NULL, true);
|
|
482 |
$url = 'cdm_dataportal/search/taxon';
|
|
483 |
$form['#method'] = 'get';
|
|
484 |
$form['#process'] = array('cdm_dataportal_search_process' => array());
|
|
485 |
$form['#action'] = url($url, NULL, NULL, true);
|
| 486 |
486 |
|
| 487 |
|
$form['query'] = array(
|
|
487 |
$form['query'] = array(
|
| 488 |
488 |
'#delta' => 0,
|
| 489 |
489 |
'#type' => 'textfield',
|
| 490 |
490 |
'#size' => 20,
|
| 491 |
491 |
'#attributes' => array('title' => t('Enter the name or part of a name you wish to search for. The asterisk character * can always be used as wildcard')),
|
| 492 |
492 |
'#value' => $preset_query,
|
| 493 |
|
);
|
|
493 |
);
|
| 494 |
494 |
|
| 495 |
|
$form['search'] = array(
|
|
495 |
$form['search'] = array(
|
| 496 |
496 |
'#delta' => 1,
|
| 497 |
497 |
'#tree' => true,
|
| 498 |
|
//'#type' => $advancedForm ? 'fieldset': 'hidden',
|
|
498 |
//'#type' => $advancedForm ? 'fieldset': 'hidden',
|
| 499 |
499 |
'#title' => t('Options')
|
| 500 |
|
);
|
|
500 |
);
|
| 501 |
501 |
|
| 502 |
|
$form['search']['tree'] = array(
|
|
502 |
$form['search']['tree'] = array(
|
| 503 |
503 |
'#delta' => -1,
|
| 504 |
504 |
'#type' => 'hidden',
|
| 505 |
505 |
'#value' => get_taxonomictree_uuid_selected()
|
| 506 |
|
);
|
|
506 |
);
|
| 507 |
507 |
|
| 508 |
508 |
|
| 509 |
|
// clean URL get forms breaks if we don't give it a 'q'.
|
| 510 |
|
if (!(bool)variable_get('clean_url', '0')) {
|
| 511 |
|
$form['search']['q'] = array(
|
|
509 |
// clean URL get forms breaks if we don't give it a 'q'.
|
|
510 |
if (!(bool)variable_get('clean_url', '0')) {
|
|
511 |
$form['search']['q'] = array(
|
| 512 |
512 |
'#delta' => -1,
|
| 513 |
513 |
'#type' => 'hidden',
|
| 514 |
514 |
'#value' => $url,
|
| 515 |
515 |
'#name' => 'q',
|
| 516 |
|
);
|
| 517 |
|
}
|
|
516 |
);
|
|
517 |
}
|
| 518 |
518 |
|
| 519 |
|
$form['search']['pageSize'] = array(
|
|
519 |
$form['search']['pageSize'] = array(
|
| 520 |
520 |
'#delta' => -1,
|
| 521 |
521 |
'#type' => 'hidden',
|
| 522 |
522 |
'#value' => variable_get('cdm_dataportal_search_items_on_page', 25)
|
| 523 |
|
);
|
|
523 |
);
|
| 524 |
524 |
|
| 525 |
|
$form['search']['pageNumber'] = array(
|
|
525 |
$form['search']['pageNumber'] = array(
|
| 526 |
526 |
'#delta' => -1,
|
| 527 |
527 |
'#type' => 'hidden',
|
| 528 |
528 |
'#value' => 0
|
| 529 |
529 |
);
|
| 530 |
530 |
|
| 531 |
|
if($advancedForm){
|
| 532 |
|
// general search parameters
|
| 533 |
|
$form['search']['doTaxa'] = array(
|
|
531 |
if($advancedForm){
|
|
532 |
// general search parameters
|
|
533 |
$form['search']['doTaxa'] = array(
|
| 534 |
534 |
'#delta' => 2,
|
| 535 |
535 |
'#type' => 'checkbox',
|
| 536 |
536 |
'#title' => t('Search for accepted taxa'),
|
| 537 |
537 |
'#value' => $preset_doTaxa
|
| 538 |
|
);
|
| 539 |
|
$form['search']['doSynonyms'] = array(
|
|
538 |
);
|
|
539 |
$form['search']['doSynonyms'] = array(
|
| 540 |
540 |
'#delta' => 3,
|
| 541 |
541 |
'#type' => 'checkbox',
|
| 542 |
542 |
'#title' => t('Search for synonyms'),
|
| 543 |
543 |
'#value' => $preset_doSynonyms
|
| 544 |
|
);
|
| 545 |
|
$form['search']['doTaxaByCommonNames'] = array(
|
|
544 |
);
|
|
545 |
$form['search']['doTaxaByCommonNames'] = array(
|
| 546 |
546 |
'#delta' => 4,
|
| 547 |
547 |
'#type' => 'checkbox',
|
| 548 |
548 |
'#title' => t('Search for common names'),
|
| 549 |
549 |
'#value' => $preset_doTaxaByCommonNames
|
| 550 |
|
);
|
|
550 |
);
|
| 551 |
551 |
|
| 552 |
|
// Geographic Range
|
| 553 |
|
$form['search']['geographic_range'] = array(
|
|
552 |
// Geographic Range
|
|
553 |
$form['search']['geographic_range'] = array(
|
| 554 |
554 |
'#type' => 'fieldset',
|
| 555 |
555 |
'#delta' => 5,
|
| 556 |
556 |
'#tree' => true,
|
| 557 |
557 |
'#title' => t('Geographic range'),
|
| 558 |
|
);
|
|
558 |
);
|
| 559 |
559 |
|
| 560 |
|
$form['search']['geographic_range']['tdwg_level_select'] = array(
|
|
560 |
$form['search']['geographic_range']['tdwg_level_select'] = array(
|
| 561 |
561 |
'#type' => 'radios',
|
| 562 |
562 |
'#title' => t('Select a TDWG distribution level and code'),
|
| 563 |
563 |
'#default_value' => $tdwg_level_select,
|
| 564 |
564 |
'#options' => array(
|
| 565 |
|
t('TDWG level-1, i.e. a continent'),
|
| 566 |
|
t('TDWG level-2'),
|
| 567 |
|
t('TDWG level-3, i.e. a country'),
|
| 568 |
|
t('TDWG level-4')
|
| 569 |
|
)
|
| 570 |
|
);
|
| 571 |
|
$tdwg[1] = cdm_ws_get(CDM_WS_TDWG_LEVEL, '1');
|
| 572 |
|
$tdwg[2] = cdm_ws_get(CDM_WS_TDWG_LEVEL, '2');
|
| 573 |
|
$tdwg[3] = cdm_ws_get(CDM_WS_TDWG_LEVEL, '3');
|
| 574 |
|
$tdwg[4] = cdm_ws_get(CDM_WS_TDWG_LEVEL, '4');
|
| 575 |
|
|
| 576 |
|
$tdwg_js = '';
|
| 577 |
|
foreach($tdwg as $key=>$tdwg_level){
|
| 578 |
|
$tdwgOptions = array();
|
| 579 |
|
$tdwgOptionsSelected = array();
|
| 580 |
|
foreach($tdwg_level as $area){
|
| 581 |
|
$representation = $area->representations[0];
|
| 582 |
|
$tdwgOptions[$representation->abbreviatedLabel] = $area->representation_L10n;
|
| 583 |
|
if(is_array($selected_areas) && in_array($representation->abbreviatedLabel, $selected_areas)){
|
| 584 |
|
$tdwgOptionsSelected[] = $representation->abbreviatedLabel; //$area->uuid;
|
| 585 |
|
}
|
| 586 |
|
}
|
| 587 |
|
asort($tdwgOptions);
|
| 588 |
|
$form['search']['geographic_range']['tdwg_level_'.$key] = array(
|
|
565 |
t('TDWG level-1, i.e. a continent'),
|
|
566 |
t('TDWG level-2'),
|
|
567 |
t('TDWG level-3, i.e. a country'),
|
|
568 |
t('TDWG level-4')
|
|
569 |
)
|
|
570 |
);
|
|
571 |
$tdwg[1] = cdm_ws_get(CDM_WS_TDWG_LEVEL, '1');
|
|
572 |
$tdwg[2] = cdm_ws_get(CDM_WS_TDWG_LEVEL, '2');
|
|
573 |
$tdwg[3] = cdm_ws_get(CDM_WS_TDWG_LEVEL, '3');
|
|
574 |
$tdwg[4] = cdm_ws_get(CDM_WS_TDWG_LEVEL, '4');
|
|
575 |
|
|
576 |
$tdwg_js = '';
|
|
577 |
foreach($tdwg as $key=>$tdwg_level){
|
|
578 |
$tdwgOptions = array();
|
|
579 |
$tdwgOptionsSelected = array();
|
|
580 |
foreach($tdwg_level as $area){
|
|
581 |
$representation = $area->representations[0];
|
|
582 |
$tdwgOptions[$representation->abbreviatedLabel] = $area->representation_L10n;
|
|
583 |
if(is_array($selected_areas) && in_array($representation->abbreviatedLabel, $selected_areas)){
|
|
584 |
$tdwgOptionsSelected[] = $representation->abbreviatedLabel; //$area->uuid;
|
|
585 |
}
|
|
586 |
}
|
|
587 |
asort($tdwgOptions);
|
|
588 |
$form['search']['geographic_range']['tdwg_level_'.$key] = array(
|
| 589 |
589 |
'#type' => 'select',
|
| 590 |
590 |
'#title' => t('TDWG level').' '.$key,
|
| 591 |
591 |
'#default_value' => $tdwgOptionsSelected,
|
| 592 |
592 |
'#multiple' => TRUE,
|
| 593 |
593 |
'#options' => $tdwgOptions
|
| 594 |
|
);
|
| 595 |
|
$tdwg_js .= "$('#edit-search-geographic-range-tdwg-level-$key').parent()".($tdwg_level_select + 1 == $key ? '.show()' : '.hide()'). ";\n";
|
| 596 |
|
}
|
|
594 |
);
|
|
595 |
$tdwg_js .= "$('#edit-search-geographic-range-tdwg-level-$key').parent()".($tdwg_level_select + 1 == $key ? '.show()' : '.hide()'). ";\n";
|
|
596 |
}
|
| 597 |
597 |
|
| 598 |
|
drupal_add_js(
|
|
598 |
drupal_add_js(
|
| 599 |
599 |
"$(document).ready(function(){
|
| 600 |
600 |
|
| 601 |
601 |
$(\"input[@name='search[geographic_range][tdwg_level_select]']\").change(
|
| ... | ... | |
| 618 |
618 |
});",
|
| 619 |
619 |
'inline');
|
| 620 |
620 |
|
| 621 |
|
} else {
|
| 622 |
|
$form['search']['doTaxa'] = array(
|
| 623 |
|
'#delta' => -2,
|
| 624 |
|
'#type' => 'hidden',
|
| 625 |
|
'#value' => 1
|
| 626 |
|
);
|
| 627 |
|
$form['search']['doSynonyms'] = array(
|
| 628 |
|
'#delta' => -3,
|
| 629 |
|
'#type' => 'hidden',
|
| 630 |
|
'#value' => 1
|
| 631 |
|
);
|
| 632 |
|
$form['search']['doTaxaByCommonNames'] = array(
|
| 633 |
|
'#delta' => -4,
|
| 634 |
|
'#type' => 'hidden',
|
| 635 |
|
'#value' => 0
|
| 636 |
|
);
|
| 637 |
|
}
|
| 638 |
|
|
| 639 |
|
$form['submit'] = array(
|
| 640 |
|
'#delta' => 9,
|
| 641 |
|
'#type' => 'submit',
|
| 642 |
|
'#name' => '',
|
| 643 |
|
'#value' => t('Search')
|
| 644 |
|
);
|
| 645 |
|
|
| 646 |
|
return $form;
|
|
621 |
} else {
|
|
622 |
$form['search']['doTaxa'] = array(
|
|
623 |
'#delta' => -2,
|
|
624 |
'#type' => 'hidden',
|
|
625 |
'#value' => 1
|
|
626 |
);
|
|
627 |
$form['search']['doSynonyms'] = array(
|
|
628 |
'#delta' => -3,
|
|
629 |
'#type' => 'hidden',
|
|
630 |
'#value' => 1
|
|
631 |
);
|
|
632 |
$form['search']['doTaxaByCommonNames'] = array(
|
|
633 |
'#delta' => -4,
|
|
634 |
'#type' => 'hidden',
|
|
635 |
'#value' => 0
|
|
636 |
);
|
|
637 |
}
|
|
638 |
|
|
639 |
$form['submit'] = array(
|
|
640 |
'#delta' => 9,
|
|
641 |
'#type' => 'submit',
|
|
642 |
'#name' => '',
|
|
643 |
'#value' => t('Search')
|
|
644 |
);
|
|
645 |
|
|
646 |
return $form;
|
| 647 |
647 |
}
|
| 648 |
648 |
|
| 649 |
649 |
function cdm_dataportal_search_taxon_form_advanced(){
|
| 650 |
|
return cdm_dataportal_search_taxon_form(true);
|
|
650 |
return cdm_dataportal_search_taxon_form(true);
|
| 651 |
651 |
}
|
| 652 |
652 |
|
| 653 |
653 |
function cdm_taxonomictree_selector(){
|
| 654 |
|
_add_js_treeselector();
|
|
654 |
_add_js_treeselector();
|
| 655 |
655 |
|
| 656 |
|
$out = drupal_get_form('cdm_taxonomictree_selector_form');
|
|
656 |
$out = drupal_get_form('cdm_taxonomictree_selector_form');
|
| 657 |
657 |
|
| 658 |
|
return $out;
|
|
658 |
return $out;
|
| 659 |
659 |
}
|
| 660 |
660 |
|
| 661 |
661 |
|
| 662 |
662 |
function cdm_taxonomictree_selector_form(){
|
| 663 |
663 |
|
| 664 |
|
$url = url('cdm_api/setvalue/session', null);
|
| 665 |
|
$form['#action'] = $url;
|
|
664 |
$url = url('cdm_api/setvalue/session', null);
|
|
665 |
$form['#action'] = $url;
|
| 666 |
666 |
|
| 667 |
|
$form['var'] = array(
|
|
667 |
$form['var'] = array(
|
| 668 |
668 |
'#delta' => -3,
|
| 669 |
669 |
'#type' => 'hidden',
|
| 670 |
670 |
'#value' => '[cdm][taxonomictree_uuid]'
|
| 671 |
671 |
);
|
| 672 |
672 |
|
| 673 |
673 |
$form['destination'] = array(
|
| 674 |
|
'#delta' => -3,
|
| 675 |
|
'#type' => 'hidden',
|
| 676 |
|
'#value' => substr(drupal_get_destination(), strlen('destination='))
|
|
674 |
'#delta' => -3,
|
|
675 |
'#type' => 'hidden',
|
|
676 |
'#value' => substr(drupal_get_destination(), strlen('destination='))
|
| 677 |
677 |
);
|
| 678 |
678 |
|
| 679 |
679 |
$form['val'] = array(
|
| ... | ... | |
| 695 |
695 |
* @return unknown_type
|
| 696 |
696 |
*/
|
| 697 |
697 |
function cdm_dataportal_search_process($form) {
|
| 698 |
|
unset($form['form_id']);
|
| 699 |
|
unset($form['form_token']);
|
| 700 |
|
return $form;
|
|
698 |
unset($form['form_id']);
|
|
699 |
unset($form['form_token']);
|
|
700 |
return $form;
|
| 701 |
701 |
}
|
| 702 |
702 |
|
| 703 |
703 |
/**
|
| ... | ... | |
| 707 |
707 |
function cdm_dataportal_search_form_request(){
|
| 708 |
708 |
|
| 709 |
709 |
|
| 710 |
|
$form_params = array();
|
| 711 |
|
array_deep_copy($_REQUEST['search'], $form_params);
|
| 712 |
|
$form_params['query'] = trim($_REQUEST['query']);
|
|
710 |
$form_params = array();
|
|
711 |
array_deep_copy($_REQUEST['search'], $form_params);
|
|
712 |
$form_params['query'] = trim($_REQUEST['query']);
|
| 713 |
713 |
|
| 714 |
|
// split of geographic range
|
| 715 |
|
if(isset($_REQUEST['search']['geographic_range'])){
|
| 716 |
|
$geographicRange = $_REQUEST['search']['geographic_range'];
|
| 717 |
|
// remove
|
| 718 |
|
unset($form_params['geographic_range']);
|
| 719 |
|
}
|
|
714 |
// split of geographic range
|
|
715 |
if(isset($_REQUEST['search']['geographic_range'])){
|
|
716 |
$geographicRange = $_REQUEST['search']['geographic_range'];
|
|
717 |
// remove
|
|
718 |
unset($form_params['geographic_range']);
|
|
719 |
}
|
| 720 |
720 |
|
| 721 |
|
// add geographic range
|
| 722 |
|
if($geographicRange){
|
| 723 |
|
$form_params['tdwg_level_select'] = $geographicRange['tdwg_level_select'];
|
| 724 |
|
for($i = 1; $i < 5; $i++){
|
| 725 |
|
if(isset($geographicRange['tdwg_level_'.$i])){
|
| 726 |
|
$form_params['area'] = $geographicRange['tdwg_level_'.$i];
|
| 727 |
|
}
|
| 728 |
|
}
|
| 729 |
|
}
|
|
721 |
// add geographic range
|
|
722 |
if($geographicRange){
|
|
723 |
$form_params['tdwg_level_select'] = $geographicRange['tdwg_level_select'];
|
|
724 |
for($i = 1; $i < 5; $i++){
|
|
725 |
if(isset($geographicRange['tdwg_level_'.$i])){
|
|
726 |
$form_params['area'] = $geographicRange['tdwg_level_'.$i];
|
|
727 |
}
|
|
728 |
}
|
|
729 |
}
|
| 730 |
730 |
|
| 731 |
|
// store in session
|
| 732 |
|
$_SESSION['cdm']['search'] = $form_params;
|
|
731 |
// store in session
|
|
732 |
$_SESSION['cdm']['search'] = $form_params;
|
| 733 |
733 |
|
| 734 |
|
return $form_params;
|
|
734 |
return $form_params;
|
| 735 |
735 |
}
|
| 736 |
736 |
|
| 737 |
737 |
|
| ... | ... | |
| 751 |
751 |
|
| 752 |
752 |
function cdm_dataportal_form_alter($form_id, &$form) {
|
| 753 |
753 |
|
| 754 |
|
static $comment_node_disabled = 0;
|
| 755 |
|
static $comment_node_read_only = 1;
|
| 756 |
|
static $comment_node_read_write = 2;
|
|
754 |
static $comment_node_disabled = 0;
|
|
755 |
static $comment_node_read_only = 1;
|
|
756 |
static $comment_node_read_write = 2;
|
| 757 |
757 |
|
| 758 |
758 |
|
| 759 |
|
if ($form_id == 'node_type_form'
|
| 760 |
|
&& isset($form['identity']['type'])
|
| 761 |
|
&& array_key_exists($form['#node_type']->type, cdm_get_nodetypes())
|
| 762 |
|
) {
|
| 763 |
|
$form['workflow']['comment'] = array(
|
|
759 |
if ($form_id == 'node_type_form'
|
|
760 |
&& isset($form['identity']['type'])
|
|
761 |
&& array_key_exists($form['#node_type']->type, cdm_get_nodetypes())
|
|
762 |
) {
|
|
763 |
$form['workflow']['comment'] = array(
|
| 764 |
764 |
'#type' => 'radios',
|
| 765 |
765 |
'#title' => t('Default comment setting'),
|
| 766 |
766 |
'#default_value' => variable_get('comment_'. $form['#node_type']->type, $comment_node_disabled),
|
| 767 |
767 |
'#options' => array(t('Disabled'), t('Read only'), t('Read/Write')),
|
| 768 |
768 |
'#description' => t('Users with the <em>administer comments</em> permission will be able to override this setting.'),
|
| 769 |
|
);
|
| 770 |
|
}
|
|
769 |
);
|
|
770 |
}
|
| 771 |
771 |
}
|
| 772 |
772 |
|
| 773 |
773 |
|
| 774 |
774 |
|
| 775 |
775 |
function cdm_dataportal_create_gallery_settings_form($form_name, $form_tittle, $collapsed, $form_description = ''){
|
| 776 |
776 |
//TODO move into settings.php
|
| 777 |
|
$form[$form_name] = array(
|
|
777 |
$form[$form_name] = array(
|
| 778 |
778 |
'#type' => 'fieldset',
|
| 779 |
779 |
'#title' => t($form_tittle),
|
| 780 |
780 |
'#collapsible' => TRUE,
|
| 781 |
781 |
'#collapsed' => $collapsed,
|
| 782 |
782 |
'#tree' => true,
|
| 783 |
|
'#description' => t($form_description),
|
| 784 |
|
);
|
| 785 |
|
|
| 786 |
|
$default_values = unserialize(CDM_DATAPORTAL_GALLERY_SETTINGS);
|
| 787 |
|
$gallery_settings = variable_get($form_name, $default_values);
|
| 788 |
|
//$test = variable_get('cdm_dataportal_search_items_on_page', CDM_DATAPORTAL_SEARCH_ITEMS_ON_PAGE);
|
| 789 |
|
|
| 790 |
|
if($form_name == CDM_DATAPORTAL_SEARCH_GALLERY_NAME){
|
| 791 |
|
/* TODO: why cdm_dataportal_search_items_on_page does not save the value on $test???
|
| 792 |
|
$form[$form_name]['cdm_dataportal_search_items_on_page'] = array(
|
| 793 |
|
'#type' => 'textfield',
|
| 794 |
|
'#title' => t('Search Page Size'),
|
| 795 |
|
'#default_value' => $test,
|
| 796 |
|
'#description' => t('Number of Names to display per page in search results.')
|
| 797 |
|
);
|
| 798 |
|
*/
|
| 799 |
|
$form[$form_name]['cdm_dataportal_show_taxon_thumbnails'] = array(
|
|
783 |
'#description' => t($form_description),
|
|
784 |
);
|
|
785 |
|
|
786 |
$default_values = unserialize(CDM_DATAPORTAL_GALLERY_SETTINGS);
|
|
787 |
$gallery_settings = variable_get($form_name, $default_values);
|
|
788 |
//$test = variable_get('cdm_dataportal_search_items_on_page', CDM_DATAPORTAL_SEARCH_ITEMS_ON_PAGE);
|
|
789 |
|
|
790 |
if($form_name == CDM_DATAPORTAL_SEARCH_GALLERY_NAME){
|
|
791 |
/* TODO: why cdm_dataportal_search_items_on_page does not save the value on $test???
|
|
792 |
$form[$form_name]['cdm_dataportal_search_items_on_page'] = array(
|
|
793 |
'#type' => 'textfield',
|
|
794 |
'#title' => t('Search Page Size'),
|
|
795 |
'#default_value' => $test,
|
|
796 |
'#description' => t('Number of Names to display per page in search results.')
|
|
797 |
);
|
|
798 |
*/
|
|
799 |
$form[$form_name]['cdm_dataportal_show_taxon_thumbnails'] = array(
|
| 800 |
800 |
'#type' => 'checkbox',
|
| 801 |
801 |
'#title' => t('Show media thumbnails for accepted taxa'),
|
| 802 |
802 |
'#default_value' => $gallery_settings['cdm_dataportal_show_taxon_thumbnails'],
|
| 803 |
|
);
|
|
803 |
);
|
| 804 |
804 |
|
| 805 |
|
$form[$form_name]['cdm_dataportal_show_synonym_thumbnails'] = array(
|
|
805 |
$form[$form_name]['cdm_dataportal_show_synonym_thumbnails'] = array(
|
| 806 |
806 |
'#type' => 'checkbox',
|
| 807 |
807 |
'#title' => t('Show media thumbnails for synonyms'),
|
| 808 |
808 |
'#default_value' => $gallery_settings['cdm_dataportal_show_synonym_thumbnails'],
|
| 809 |
809 |
'#description' => t('')
|
| 810 |
|
);
|
| 811 |
|
}
|
|
810 |
);
|
|
811 |
}
|
| 812 |
812 |
|
| 813 |
|
//$showCaption = variable_get('cdm_dataportal_findtaxa_show_thumbnail_captions', 0);
|
| 814 |
|
$form[$form_name]['cdm_dataportal_show_thumbnail_captions'] = array(
|
|
813 |
//$showCaption = variable_get('cdm_dataportal_findtaxa_show_thumbnail_captions', 0);
|
|
814 |
$form[$form_name]['cdm_dataportal_show_thumbnail_captions'] = array(
|
| 815 |
815 |
'#type' => 'checkbox',
|
| 816 |
816 |
'#title' => t('Show captions under thumbnails'),
|
| 817 |
817 |
'#default_value' => $gallery_settings['cdm_dataportal_show_thumbnail_captions'],
|
| 818 |
818 |
'#description' => t('')
|
| 819 |
|
);
|
|
819 |
);
|
| 820 |
820 |
|
| 821 |
|
$form[$form_name]['cdm_dataportal_media_maxextend'] = array(
|
|
821 |
$form[$form_name]['cdm_dataportal_media_maxextend'] = array(
|
| 822 |
822 |
'#type' => 'textfield',
|
| 823 |
823 |
'#title' => t('Thumbnail size'),
|
| 824 |
824 |
'#default_value' => $gallery_settings['cdm_dataportal_media_maxextend'],
|
| 825 |
825 |
'#description' => t('Select the size of each individual thumbnail.')
|
| 826 |
|
);
|
|
826 |
);
|
| 827 |
827 |
|
| 828 |
|
if($form_name != CDM_DATAPORTAL_MEDIA_GALLERY_NAME){
|
| 829 |
|
$form[$form_name]['cdm_dataportal_media_cols'] = array(
|
|
828 |
if($form_name != CDM_DATAPORTAL_MEDIA_GALLERY_NAME){
|
|
829 |
$form[$form_name]['cdm_dataportal_media_cols'] = array(
|
| 830 |
830 |
'#type' => 'textfield',
|
| 831 |
831 |
'#title' => t('Number of columns'),
|
| 832 |
832 |
'#default_value' => $gallery_settings['cdm_dataportal_media_cols'],
|
| 833 |
833 |
'#description' => t('Group the thumbnails in columns: select how many columns should the gallery display.')
|
| 834 |
|
);
|
| 835 |
|
}
|
|
834 |
);
|
|
835 |
}
|
| 836 |
836 |
|
| 837 |
|
if($form_name == CDM_DATAPORTAL_SEARCH_GALLERY_NAME){
|
| 838 |
|
$form[$form_name]['cdm_dataportal_media_maxRows'] = array(
|
|
837 |
if($form_name == CDM_DATAPORTAL_SEARCH_GALLERY_NAME){
|
|
838 |
$form[$form_name]['cdm_dataportal_media_maxRows'] = array(
|
| 839 |
839 |
'#type' => 'textfield',
|
| 840 |
840 |
'#title' => t('Maximum number of rows'),
|
| 841 |
841 |
'#default_value' => $gallery_settings['cdm_dataportal_media_maxRows'],
|
| 842 |
842 |
'#description' => t('You can group the thumbnails in rows, select in how many rows should be the thumbnails grouped.<br>
|
| 843 |
843 |
<b>Note:</b> If you want an unlimited number of rows please set to 0')
|
| 844 |
|
);
|
| 845 |
|
}
|
|
844 |
);
|
|
845 |
}
|
| 846 |
846 |
|
| 847 |
|
return $form;
|
|
847 |
return $form;
|
| 848 |
848 |
}
|
| 849 |
849 |
|
| 850 |
850 |
|
| ... | ... | |
| 857 |
857 |
*/
|
| 858 |
858 |
function cdm_dataportal_view_names($beginsWith = 'A', $page = 1, $onlyAccepted = false ){
|
| 859 |
859 |
|
| 860 |
|
$request_params = array(
|
|
860 |
$request_params = array(
|
| 861 |
861 |
'q' => $beginsWith,
|
| 862 |
|
//'sec' = '',
|
| 863 |
|
//'higherTaxa' => getFiters(),
|
| 864 |
|
// 'matchAnywhere' => false, // default is false
|
|
862 |
//'sec' = '',
|
|
863 |
//'higherTaxa' => getFiters(),
|
|
864 |
// 'matchAnywhere' => false, // default is false
|
| 865 |
865 |
'page' => $page,
|
| 866 |
866 |
'onlyAccepted' => $onlyAccepted,
|
| 867 |
867 |
'pagesize' => 20 /*$_SESSION['cdm']['namelist_pagesize'] */);
|
| 868 |
868 |
|
| 869 |
|
$taxonPager = cdm_ws_find(CDM_WS_PORTAL_TAXON_FIND, $request_params);
|
| 870 |
|
/*
|
| 871 |
|
* FIXME the filter for accepted names will be a form element, thus this widget
|
| 872 |
|
* should be generated via form api preferably as block
|
| 873 |
|
*/
|
| 874 |
|
//$out = theme('cdm_dataportal_widget_filter_accepted', $onlyAccepted);
|
| 875 |
|
//$out .= theme('cdm_dataportal_widget_names_list', $names, $page);
|
| 876 |
|
$out .= theme('cdm_listof_taxa', $taxonPager);
|
| 877 |
|
return $out;
|
|
869 |
$taxonPager = cdm_ws_find(CDM_WS_PORTAL_TAXON_FIND, $request_params);
|
|
870 |
/*
|
|
871 |
* FIXME the filter for accepted names will be a form element, thus this widget
|
|
872 |
* should be generated via form api preferably as block
|
|
873 |
*/
|
|
874 |
//$out = theme('cdm_dataportal_widget_filter_accepted', $onlyAccepted);
|
|
875 |
//$out .= theme('cdm_dataportal_widget_names_list', $names, $page);
|
|
876 |
$out .= theme('cdm_listof_taxa', $taxonPager);
|
|
877 |
return $out;
|
| 878 |
878 |
}
|
| 879 |
879 |
|
| 880 |
880 |
function cdm_dataportal_view_reference($uuid, $arg2 = null){
|
| 881 |
|
$reference = cdm_ws_get(CDM_WS_REFERENCE, $uuid);
|
| 882 |
|
return theme('cdm_reference_page', $reference);
|
|
881 |
$reference = cdm_ws_get(CDM_WS_REFERENCE, $uuid);
|
|
882 |
return theme('cdm_reference_page', $reference);
|
| 883 |
883 |
}
|
| 884 |
884 |
|
| 885 |
885 |
function cdm_dataportal_view_reference_list($pageNumber){
|
| 886 |
|
$referencePager = cdm_ws_page(CDM_WS_REFERENCE, variable_get('cdm_dataportal_search_items_on_page', CDM_DATAPORTAL_SEARCH_ITEMS_ON_PAGE), $pageNumber);
|
| 887 |
|
return theme('cdm_reference_pager', $referencePager, 'cdm_dataportal/reference/list/');
|
|
886 |
$referencePager = cdm_ws_page(CDM_WS_REFERENCE, variable_get('cdm_dataportal_search_items_on_page', CDM_DATAPORTAL_SEARCH_ITEMS_ON_PAGE), $pageNumber);
|
|
887 |
return theme('cdm_reference_pager', $referencePager, 'cdm_dataportal/reference/list/');
|
| 888 |
888 |
}
|
| 889 |
889 |
|
| 890 |
890 |
function cdm_dataportal_view_media($mediaUuid, $mediarepresentation_uuid = false, $part = 0){
|
| 891 |
|
$media = cdm_ws_get(CDM_WS_PORTAL_MEDIA, $mediaUuid);
|
| 892 |
|
return theme('cdm_media_page', $media, $mediarepresentation_uuid, $part);
|
|
891 |
$media = cdm_ws_get(CDM_WS_PORTAL_MEDIA, $mediaUuid);
|
|
892 |
return theme('cdm_media_page', $media, $mediarepresentation_uuid, $part);
|
| 893 |
893 |
}
|
| 894 |
894 |
|
| 895 |
895 |
function _load_taxonBase(&$taxonBase){
|
| 896 |
|
if(isset($taxonBase->uuid)){
|
| 897 |
|
$taxonBase->name = cdm_ws_get(CDM_WS_TAXON, array($taxonBase->uuid, "name"));
|
| 898 |
|
$taxonBase->name->taggedName = cdm_ws_get(CDM_WS_NAME, array($taxonBase->name->uuid, "taggedName"));
|
| 899 |
|
$taxonBase->name->nomenclaturalReference = cdm_ws_get(CDM_WS_NAME, array($taxonBase->name->uuid, "nomenclaturalReference"));
|
| 900 |
|
}
|
|
896 |
if(isset($taxonBase->uuid)){
|
|
897 |
$taxonBase->name = cdm_ws_get(CDM_WS_TAXON, array($taxonBase->uuid, "name"));
|
|
898 |
$taxonBase->name->taggedName = cdm_ws_get(CDM_WS_NAME, array($taxonBase->name->uuid, "taggedName"));
|
|
899 |
$taxonBase->name->nomenclaturalReference = cdm_ws_get(CDM_WS_NAME, array($taxonBase->name->uuid, "nomenclaturalReference"));
|
|
900 |
}
|
| 901 |
901 |
}
|
| 902 |
902 |
|
| 903 |
903 |
/**
|
| ... | ... | |
| 927 |
927 |
*/
|
| 928 |
928 |
function _load_polytomousKeySubGraph(&$polytomousKeyNode){
|
| 929 |
929 |
|
| 930 |
|
if(!$polytomousKeyNode){
|
| 931 |
|
return;
|
| 932 |
|
}
|
| 933 |
|
if($polytomousKeyNode->class != "PolytomousKeyNode"){
|
| 934 |
|
drupal_set_message("_load_polytomousKeySubGraph() invalid type given.", "error");
|
| 935 |
|
return;
|
| 936 |
|
}
|
|
930 |
if(!$polytomousKeyNode){
|
|
931 |
return;
|
|
932 |
}
|
|
933 |
if($polytomousKeyNode->class != "PolytomousKeyNode"){
|
|
934 |
drupal_set_message("_load_polytomousKeySubGraph() invalid type given.", "error");
|
|
935 |
return;
|
|
936 |
}
|
| 937 |
937 |
if(!is_uuid($polytomousKeyNode->uuid)){
|
| 938 |
938 |
drupal_set_message("_load_polytomousKeySubGraph() invalid type given.", "error");
|
| 939 |
939 |
return;
|
| 940 |
940 |
}
|
| 941 |
941 |
|
| 942 |
|
$polytomousKeyNode = cdm_ws_get(CDM_WS_POLYTOMOUSKEY_NODE, $polytomousKeyNode->uuid);
|
|
942 |
$polytomousKeyNode = cdm_ws_get(CDM_WS_POLYTOMOUSKEY_NODE, $polytomousKeyNode->uuid);
|
| 943 |
943 |
|
| 944 |
944 |
if(!$polytomousKeyNode){
|
| 945 |
|
//drupal_set_message("_load_polytomousKeyChildNodes() : could not load polytomousKeyNode", "error");
|
| 946 |
|
return;
|
|
945 |
//drupal_set_message("_load_polytomousKeyChildNodes() : could not load polytomousKeyNode", "error");
|
|
946 |
return;
|
| 947 |
947 |
}
|
| 948 |
948 |
|
| 949 |
949 |
// load children
|
| ... | ... | |
| 992 |
992 |
* @return unknown_type
|
| 993 |
993 |
*/
|
| 994 |
994 |
function cdm_dataportal_taxon_page_view($uuid, $chapter = 'all', $synonym_uuid = null){
|
| 995 |
|
// display the page for the taxon defined by $uuid
|
| 996 |
|
set_last_taxon_page_tab(arg(3));
|
| 997 |
|
$taxonpage = cdm_dataportal_taxon_view($uuid, $chapter, $synonym_uuid);
|
| 998 |
|
return cdm_node_show(NODETYPE_TAXON, $uuid, $taxonpage->title , $taxonpage->content);
|
|
995 |
// display the page for the taxon defined by $uuid
|
|
996 |
set_last_taxon_page_tab(arg(3));
|
|
997 |
$taxonpage = cdm_dataportal_taxon_view($uuid, $chapter, $synonym_uuid);
|
|
998 |
return cdm_node_show(NODETYPE_TAXON, $uuid, $taxonpage->title , $taxonpage->content);
|
| 999 |
999 |
}
|
| 1000 |
1000 |
|
| 1001 |
1001 |
/**
|
| ... | ... | |
| 1005 |
1005 |
* @return unknown_type
|
| 1006 |
1006 |
*/
|
| 1007 |
1007 |
function cdm_dataportal_taxon_view($uuid, $chapter = 'all', $synonym_uuid = null){
|
| 1008 |
|
$taxon = cdm_ws_get(CDM_WS_PORTAL_TAXON, $uuid);
|
| 1009 |
|
if(!$taxon){
|
| 1010 |
|
drupal_set_title(t('Taxon does not exist'));
|
| 1011 |
|
return false;
|
| 1012 |
|
}
|
| 1013 |
|
|
| 1014 |
|
$taxonpage->title = theme('cdm_taxon_page_title', $taxon, $uuid, $synonym_uuid);
|
| 1015 |
|
|
| 1016 |
|
// check if the taxon id contained in the currently selected tree
|
| 1017 |
|
$taxon_in_current_tree = taxon_in_current_tree($uuid);
|
| 1018 |
|
$taxon_nodes = cdm_ws_get(CDM_WS_PORTAL_TAXON_TAXONNODES, $uuid);
|
| 1019 |
|
if(!$taxon_in_current_tree){
|
| 1020 |
|
if(count($taxon_nodes) == 0){
|
| 1021 |
|
drupal_set_message('This concept of the taxon '.theme('cdm_taxonName', $taxon->name).' is not contained any classification.'
|
| 1022 |
|
,'warning');
|
| 1023 |
|
} else {
|
| 1024 |
|
$trees = '';
|
| 1025 |
|
foreach($taxon_nodes as $node){
|
| 1026 |
|
$trees .= ($trees?', ':'').'<strong>'.$node->classification->titleCache.'</strong>';
|
| 1027 |
|
|
| 1028 |
|
}
|
| 1029 |
|
drupal_set_message('This concept of the taxon '.theme('cdm_taxonName', $taxon->name).' is not contained in the currently chosen classification, but in '
|
| 1030 |
|
.(count($taxon_nodes) > 1? ' one of these: ' : ' this one: ') . $trees
|
| 1031 |
|
, 'warning');
|
| 1032 |
|
}
|
| 1033 |
|
}
|
| 1034 |
|
|
| 1035 |
|
// render the taxon page
|
| 1036 |
|
$taxonpage->content = theme('cdm_taxon_page', $taxon, $chapter);
|
| 1037 |
|
|
| 1038 |
|
return $taxonpage;
|
|
1008 |
$taxon = cdm_ws_get(CDM_WS_PORTAL_TAXON, $uuid);
|
|
1009 |
if(!$taxon){
|
|
1010 |
drupal_set_title(t('Taxon does not exist'));
|
|
1011 |
return false;
|
|
1012 |
}
|
|
1013 |
|
|
1014 |
$taxonpage->title = theme('cdm_taxon_page_title', $taxon, $uuid, $synonym_uuid);
|
|
1015 |
|
|
1016 |
// check if the taxon id contained in the currently selected tree
|
|
1017 |
$taxon_in_current_tree = taxon_in_current_tree($uuid);
|
|
1018 |
$taxon_nodes = cdm_ws_get(CDM_WS_PORTAL_TAXON_TAXONNODES, $uuid);
|
|
1019 |
if(!$taxon_in_current_tree){
|
|
1020 |
if(count($taxon_nodes) == 0){
|
|
1021 |
drupal_set_message('This concept of the taxon '.theme('cdm_taxonName', $taxon->name).' is not contained any classification.'
|
|
1022 |
,'warning');
|
|
1023 |
} else {
|
|
1024 |
$trees = '';
|
|
1025 |
foreach($taxon_nodes as $node){
|
|
1026 |
$trees .= ($trees?', ':'').'<strong>'.$node->classification->titleCache.'</strong>';
|
|
1027 |
|
|
1028 |
}
|
|
1029 |
drupal_set_message('This concept of the taxon '.theme('cdm_taxonName', $taxon->name).' is not contained in the currently chosen classification, but in '
|
|
1030 |
.(count($taxon_nodes) > 1? ' one of these: ' : ' this one: ') . $trees
|
|
1031 |
, 'warning');
|
|
1032 |
}
|
|
1033 |
}
|
|
1034 |
|
|
1035 |
// render the taxon page
|
|
1036 |
$taxonpage->content = theme('cdm_taxon_page', $taxon, $chapter);
|
|
1037 |
|
|
1038 |
return $taxonpage;
|
| 1039 |
1039 |
}
|
| 1040 |
1040 |
|
| 1041 |
1041 |
/**
|
| ... | ... | |
| 1046 |
1046 |
* @return The formatted name page as node
|
| 1047 |
1047 |
*/
|
| 1048 |
1048 |
function cdm_dataportal_name_page_view($taxon_name_uuid, $taxon_to_hide_uuid, $synonym_uuid = null){
|
| 1049 |
|
$taxonname_page = cdm_dataportal_name_view($taxon_name_uuid, $taxon_to_hide_uuid, $synonym_uuid);
|
| 1050 |
|
return cdm_node_show(NODETYPE_NAME, $taxon_name_uuid, $taxonname_page->title , $taxonname_page->content);
|
|
1049 |
$taxonname_page = cdm_dataportal_name_view($taxon_name_uuid, $taxon_to_hide_uuid, $synonym_uuid);
|
|
1050 |
return cdm_node_show(NODETYPE_NAME, $taxon_name_uuid, $taxonname_page->title , $taxonname_page->content);
|
| 1051 |
1051 |
}
|
| 1052 |
1052 |
|
| 1053 |
1053 |
/**
|
| ... | ... | |
| 1057 |
1057 |
* @return the object with the page content and title
|
| 1058 |
1058 |
*/
|
| 1059 |
1059 |
function cdm_dataportal_name_view($taxon_name_uuid, $taxon_to_hide_uuid, $synonym_uuid = null){
|
| 1060 |
|
//getting the full taxonname object from the server
|
| 1061 |
|
$taxon_name = cdm_ws_get(CDM_WS_NAME, array($taxon_name_uuid));
|
| 1062 |
|
if(!$taxon_name){
|
| 1063 |
|
drupal_set_title(t('Taxon name does not exist'));
|
| 1064 |
|
return false;
|
| 1065 |
|
}
|
| 1066 |
|
//searching for all the taxa connected with the taxon name on the tree in used
|
| 1067 |
|
$name_cache = cdm_ws_get(CDM_WS_NAME_NAMECAHE, array($taxon_name_uuid));
|
| 1068 |
|
$request_params = array();
|
| 1069 |
|
$request_params['query'] = $name_cache;
|
| 1070 |
|
$request_params['tree'] = get_taxonomictree_uuid_selected();
|
| 1071 |
|
$request_params['doTaxa'] = 1;
|
| 1072 |
|
$request_params['doSynonyms'] = 1;
|
| 1073 |
|
$request_params['doTaxaByCommonNames'] = 0;
|
| 1074 |
|
$request_params['matchMode'] = "EXACT";
|
| 1075 |
|
$taxon_pager = cdm_ws_get(CDM_WS_PORTAL_TAXON_FIND, null, queryString($request_params));
|
| 1076 |
|
|
| 1077 |
|
//removing the name where we come from and
|
| 1078 |
|
foreach($taxon_pager->records as $k=>&$taxon){
|
| 1079 |
|
if($taxon->uuid == $taxon_to_hide_uuid){
|
| 1080 |
|
unset($taxon_pager->records[$k]);
|
| 1081 |
|
}
|
| 1082 |
|
}
|
| 1083 |
|
//show the taxa list or go to the singular taxon
|
| 1084 |
|
if (sizeof($taxon_pager->records) == 1){ //sigle taxon case
|
| 1085 |
|
reset($taxon_pager->records);
|
| 1086 |
|
$first_key = key($taxon_pager->records);
|
| 1087 |
|
if($taxon_pager->records[$first_key]->class != "Taxon"){
|
| 1088 |
|
$taxon = cdm_ws_get(CDM_WS_PORTAL_TAXON_ACCEPTED, array($taxon_pager->records[$first_key]->uuid, get_taxonomictree_uuid_selected()));
|
| 1089 |
|
if($synonym_uuid){
|
| 1090 |
|
drupal_goto('cdm_dataportal/taxon/' . $taxon[0]->uuid . '/synonymy', 'highlite=' . $synonym_uuid);
|
| 1091 |
|
}else{
|
| 1092 |
|
drupal_goto('cdm_dataportal/taxon/' . $taxon[0]->uuid);
|
| 1093 |
|
}
|
| 1094 |
|
}else{
|
| 1095 |
|
if($synonym_uuid){
|
| 1096 |
|
drupal_goto('cdm_dataportal/taxon/' . $taxon_pager->records[$first_key]->uuid . '/synonymy',
|
|
1060 |
//getting the full taxonname object from the server
|
|
1061 |
$taxon_name = cdm_ws_get(CDM_WS_NAME, array($taxon_name_uuid));
|
|
1062 |
if(!$taxon_name){
|
|
1063 |
drupal_set_title(t('Taxon name does not exist'));
|
|
1064 |
return false;
|
|
1065 |
}
|
|
1066 |
//searching for all the taxa connected with the taxon name on the tree in used
|
|
1067 |
$name_cache = cdm_ws_get(CDM_WS_NAME_NAMECAHE, array($taxon_name_uuid));
|
|
1068 |
$request_params = array();
|
|
1069 |
$request_params['query'] = $name_cache;
|
|
1070 |
$request_params['tree'] = get_taxonomictree_uuid_selected();
|
|
1071 |
$request_params['doTaxa'] = 1;
|
|
1072 |
$request_params['doSynonyms'] = 1;
|
|
1073 |
$request_params['doTaxaByCommonNames'] = 0;
|
|
1074 |
$request_params['matchMode'] = "EXACT";
|
|
1075 |
$taxon_pager = cdm_ws_get(CDM_WS_PORTAL_TAXON_FIND, null, queryString($request_params));
|
|
1076 |
|
|
1077 |
//removing the name where we come from and
|
|
1078 |
foreach($taxon_pager->records as $k=>&$taxon){
|
|
1079 |
if($taxon->uuid == $taxon_to_hide_uuid){
|
|
1080 |
unset($taxon_pager->records[$k]);
|
|
1081 |
}
|
|
1082 |
}
|
|
1083 |
//show the taxa list or go to the singular taxon
|
|
1084 |
if (sizeof($taxon_pager->records) == 1){ //sigle taxon case
|
|
1085 |
reset($taxon_pager->records);
|
|
1086 |
$first_key = key($taxon_pager->records);
|
|
1087 |
if($taxon_pager->records[$first_key]->class != "Taxon"){
|
|
1088 |
$taxon = cdm_ws_get(CDM_WS_PORTAL_TAXON_ACCEPTED, array($taxon_pager->records[$first_key]->uuid, get_taxonomictree_uuid_selected()));
|
|
1089 |
if($synonym_uuid){
|
|
1090 |
drupal_goto('cdm_dataportal/taxon/' . $taxon[0]->uuid . '/synonymy', 'highlite=' . $synonym_uuid);
|
|
1091 |
}else{
|
|
1092 |
drupal_goto('cdm_dataportal/taxon/' . $taxon[0]->uuid);
|
|
1093 |
}
|
|
1094 |
}else{
|
|
1095 |
if($synonym_uuid){
|
|
1096 |
drupal_goto('cdm_dataportal/taxon/' . $taxon_pager->records[$first_key]->uuid . '/synonymy',
|
| 1097 |
1097 |
'highlite=' . $synonym_uuid);
|
| 1098 |
|
}else{
|
| 1099 |
|
drupal_goto('cdm_dataportal/taxon/' . $taxon_pager->records[$first_key]->uuid);
|
| 1100 |
|
}
|
| 1101 |
|
//drupal_goto('cdm_dataportal/taxon/' . $taxon_pager->records[$first_key]->uuid);
|
| 1102 |
|
}
|
| 1103 |
|
}else{ //more than one taxa case
|
| 1104 |
|
$taxon_name_page->title = theme('cdm_name_page_title', $taxon_name);
|
| 1105 |
|
if($taxon_pager->records){
|
| 1106 |
|
$taxon_name_page->content = theme_cdm_list_of_taxa($taxon_pager->records, false);
|
| 1107 |
|
}else{
|
| 1108 |
|
$taxon_name_page->content = 'This name has no taxa';
|
| 1109 |
|
}
|
| 1110 |
|
return $taxon_name_page;
|
| 1111 |
|
}
|
|
1098 |
}else{
|
|
1099 |
drupal_goto('cdm_dataportal/taxon/' . $taxon_pager->records[$first_key]->uuid);
|
|
1100 |
}
|
|
1101 |
//drupal_goto('cdm_dataportal/taxon/' . $taxon_pager->records[$first_key]->uuid);
|
|
1102 |
}
|
|
1103 |
}else{ //more than one taxa case
|
|
1104 |
$taxon_name_page->title = theme('cdm_name_page_title', $taxon_name);
|
|
1105 |
if($taxon_pager->records){
|
|
1106 |
$taxon_name_page->content = theme_cdm_list_of_taxa($taxon_pager->records, false);
|
|
1107 |
}else{
|
|
1108 |
$taxon_name_page->content = 'This name has no taxa';
|
|
1109 |
}
|
|
1110 |
return $taxon_name_page;
|
|
1111 |
}
|
| 1112 |
1112 |
}
|
| 1113 |
1113 |
|
| 1114 |
1114 |
function cdm_dataportal_view_search_advanced(){
|
| 1115 |
1115 |
|
| 1116 |
|
drupal_set_title(t('Advanced search'));
|
|
1116 |
drupal_set_title(t('Advanced search'));
|
| 1117 |
1117 |
|
| 1118 |
|
$searchForm = cdm_dataportal_search_taxon_form(true);
|
|
1118 |
$searchForm = cdm_dataportal_search_taxon_form(true);
|
| 1119 |
1119 |
|
| 1120 |
|
return drupal_get_form('cdm_dataportal_search_taxon_form_advanced');
|
|
1120 |
return drupal_get_form('cdm_dataportal_search_taxon_form_advanced');
|
| 1121 |
1121 |
|
| 1122 |
1122 |
}
|
| 1123 |
1123 |
|
| ... | ... | |
| 1131 |
1131 |
*/
|
| 1132 |
1132 |
function cdm_dataportal_view_search_taxon(){
|
| 1133 |
1133 |
|
| 1134 |
|
$_SESSION['cdm']['last_search'] = $_SERVER['REQUEST_URI'];
|
|
1134 |
$_SESSION['cdm']['last_search'] = $_SERVER['REQUEST_URI'];
|
| 1135 |
1135 |
|
| 1136 |
|
$request_params = cdm_dataportal_search_form_request();
|
| 1137 |
|
$taxonPager = cdm_ws_get(CDM_WS_PORTAL_TAXON_FIND, null, queryString($request_params));
|
|
1136 |
$request_params = cdm_dataportal_search_form_request();
|
|
1137 |
$taxonPager = cdm_ws_get(CDM_WS_PORTAL_TAXON_FIND, null, queryString($request_params));
|
| 1138 |
1138 |
|
| 1139 |
|
$search_params = $_REQUEST;
|
| 1140 |
|
unset($search_params['q']);
|
| 1141 |
|
return theme('cdm_search_results', $taxonPager, 'cdm_dataportal/search/taxon', $search_params);
|
|
1139 |
$search_params = $_REQUEST;
|
|
1140 |
unset($search_params['q']);
|
|
1141 |
return theme('cdm_search_results', $taxonPager, 'cdm_dataportal/search/taxon', $search_params);
|
| 1142 |
1142 |
}
|
| 1143 |
1143 |
|
| 1144 |
1144 |
|
| 1145 |
1145 |
function cdm_view_xml2json(){
|
| 1146 |
|
$file = arg(2);
|
| 1147 |
|
$datastr = get_content(variable_get('cdm_webservice_url', '').$file);
|
| 1148 |
|
return xml2json::transformXmlStringToJson($datastr);
|
|
1146 |
$file = arg(2);
|
|
1147 |
$datastr = get_content(variable_get('cdm_webservice_url', '').$file);
|
|
1148 |
return xml2json::transformXmlStringToJson($datastr);
|
| 1149 |
1149 |
}
|
| 1150 |
1150 |
|
| 1151 |
1151 |
/* ====================== other functions ====================== */
|
| ... | ... | |
| 1158 |
1158 |
* @return the URL
|
| 1159 |
1159 |
*/
|
| 1160 |
1160 |
function path_to_taxon($uuid, $no_tab = false){
|
| 1161 |
|
$tab = get_default_taxon_tab();
|
| 1162 |
|
$values = unserialize(CDM_DATAPORTAL_DEFAULT_TAXON_TAB);
|
| 1163 |
|
|
| 1164 |
|
if(!$uuid) return false;
|
| 1165 |
|
|
| 1166 |
|
if (!$tab){
|
fixing #2532 (Don't show file name for images if descritpion is given.)