Revision 886f6760
Added by Andreas Kohlbecker about 3 years ago
| modules/cdm_dataportal/includes/occurrences_new.inc | ||
|---|---|---|
| 77 | 77 |
$root_items = []; |
| 78 | 78 |
//we need one more item to contain the items of one level (fieldunit, derivate data etc.) |
| 79 | 79 |
foreach ($root_unit_dtos as &$sob_dto) {
|
| 80 |
$field_unit_dto_render_array = compose_cdm_specimen_or_observation_dto($sob_dto); |
|
| 80 |
$field_unit_dto_render_array = compose_cdm_specimen_or_observation_dto_details_grid($sob_dto);
|
|
| 81 | 81 |
$root_item = [ |
| 82 | 82 |
'#prefix' => '<div class="derived-unit-tree">', |
| 83 | 83 |
'#suffix' => '</div>', |
| ... | ... | |
| 148 | 148 |
$item['class'] = ['derived-unit-item ', html_class_attribute_ref($sob_dto)]; |
| 149 | 149 |
// data" element of the array is used as the contents of the list item |
| 150 | 150 |
$item['data'] = []; |
| 151 |
$units_render_array = compose_cdm_specimen_or_observation_dto($sob_dto); |
|
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$units_render_array = compose_cdm_specimen_or_observation_dto_details_grid($sob_dto);
|
|
| 152 | 152 |
$item['data'] = '<div class="unit-header"><div class="unit-label">' . $sob_dto->label . '</div></div>' |
| 153 | 153 |
. '<div class="unit-content">' . drupal_render($units_render_array) . '</div>'; |
| 154 | 154 |
if (isset($sob_dto->derivatives) && sizeof($sob_dto->derivatives) > 0) {
|
| ... | ... | |
| 163 | 163 |
} |
| 164 | 164 |
|
| 165 | 165 |
/** |
| 166 |
* Compose an render array from a CDM SpecimenOrObservationDTO, without |
|
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* subordinate derivatives. |
|
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* Compose grid of details tabled for a CDM SpecimenOrObservationDTO |
|
| 168 | 167 |
* |
| 169 | 168 |
* The resulting render array will contain separate DOM block level elements |
| 170 | 169 |
* with header line for the various kind of information like, location, |
| 171 | 170 |
* gathering, specimen/observation, DNA, etc. |
| 172 | 171 |
* |
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* For showing the derivation hierarchy see methods like |
|
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* derived_units_sub_tree() |
|
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* |
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* Subordinate derivatives will not be included. For showing the derivation |
|
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* hierarchy see methods like derived_units_sub_tree() |
|
| 175 | 175 |
* |
| 176 | 176 |
* compose_hook() implementation |
| 177 | 177 |
* |
| ... | ... | |
| 191 | 191 |
* |
| 192 | 192 |
* @ingroup compose |
| 193 | 193 |
*/ |
| 194 |
function compose_cdm_specimen_or_observation_dto($sob_dto, $compact_mode = FALSE, &$derivatives = NULL) {
|
|
| 194 |
function compose_cdm_specimen_or_observation_dto_details_grid($sob_dto, $compact_mode = FALSE, &$derivatives = NULL) {
|
|
| 195 | 195 |
//TODO !!!! add derivation event information like method, etc |
| 196 | 196 |
$render_array = []; |
| 197 | 197 |
if (!$sob_dto) {
|
| ... | ... | |
| 221 | 221 |
|
| 222 | 222 |
return $render_array; |
| 223 | 223 |
} |
| 224 |
/** |
|
| 225 |
* Data rows with details for a SpecimenOrObservationDTO to be used in a table |
|
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* @param object $sob_dto |
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* the CDM SpecimenOrObservationDTO |
|
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* @param bool $compact_mode |
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* Currently unused, |
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* |
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* @return array |
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* The data rows |
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*/ |
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function sob_dto_details_rows($sob_dto, $compact_mode = FALSE) {
|
|
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|
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$table_row_data = []; |
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|
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if (isset_not_empty($sob_dto->recordBase)) {
|
|
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$label = cdm_term_representation($sob_dto->recordBase); |
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if($label == 'Dna Sample'){
|
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$label == 'DNA Sample'; |
|
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} |
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$table_row_data[0] = cdm_sob_dto_table_row( |
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cdm_occurrence_field_name_label('recordBase'),
|
|
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$label); |
|
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} |
|
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if (isset_not_empty($sob_dto->kindOfUnit)) {
|
|
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$table_row_data[] = cdm_sob_dto_table_row( |
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cdm_occurrence_field_name_label('kindOfUnit'),
|
|
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cdm_term_representation($sob_dto->kindOfUnit)); |
|
| 251 |
} |
|
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if (isset_not_empty($sob_dto->preferredStableUri)) {
|
|
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$table_row_data[] = cdm_sob_dto_table_row( |
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cdm_occurrence_field_name_label('preferredStableUri'),
|
|
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cdm_external_uri($sob_dto->preferredStableUri, false)); |
|
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} |
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if (isset_not_empty($sob_dto->sex)) {
|
|
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$table_row_data[] = cdm_sob_dto_table_row( |
|
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cdm_occurrence_field_name_label('sex'),
|
|
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cdm_term_representation($sob_dto->sex)); |
|
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} |
|
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if (isset_not_empty($sob_dto->lifeStage)) {
|
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$table_row_data[] = cdm_sob_dto_table_row( |
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cdm_occurrence_field_name_label('lifeStage'),
|
|
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cdm_term_representation($sob_dto->lifeStage)); |
|
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} |
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|
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return $table_row_data; |
|
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} |
|
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|
|
| 224 | 271 |
|
| 225 | 272 |
/** |
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* Compose an render array from a CDM FieldUnitDTO, without subordinate |
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* derivatives. |
|
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* Compose a table of details for a FieldUnitDTO. |
|
| 228 | 274 |
* |
| 229 | 275 |
* The resulting DOM block level element will have a header line and details. |
| 230 | 276 |
* |
| 231 |
* For showing the derivation hierarchy see methods like |
|
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* derived_units_sub_tree() |
|
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* |
|
| 234 | 277 |
* compose_hook() implementation |
| 235 | 278 |
* |
| 236 | 279 |
* @param object $fu_dto |
| 237 | 280 |
* the CDM FieldUnitDTO |
| 238 |
* the render array for. |
|
| 239 | 281 |
* @param bool $compact_mode |
| 240 | 282 |
* Currently unused, |
| 241 | 283 |
* |
| ... | ... | |
| 246 | 288 |
*/ |
| 247 | 289 |
function compose_cdm_field_unit_dto_details($fu_dto, $compact_mode = FALSE) {
|
| 248 | 290 |
|
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$table_row_data = []; |
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if (isset_not_empty($fu_dto->sex)) {
|
|
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$table_row_data[] = cdm_sob_dto_table_row(cdm_occurrence_field_name_label('sex'), cdm_term_representation($fu_dto->sex));
|
|
| 252 |
} |
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if (isset_not_empty($fu_dto->lifeStage)) {
|
|
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$table_row_data[] = cdm_sob_dto_table_row(cdm_occurrence_field_name_label('lifeStage'), cdm_term_representation($fu_dto->lifeStage));
|
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} |
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if (isset_not_empty($fu_dto->kindOfUnit)) {
|
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$table_row_data[] = cdm_sob_dto_table_row(cdm_occurrence_field_name_label('kindOfUnit'), cdm_term_representation($fu_dto->kindOfUnit));
|
|
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} |
|
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$table_row_data = sob_dto_details_rows($fu_dto, $compact_mode); |
|
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|
|
| 259 | 293 |
if (isset_not_empty($fu_dto->individualCount)) {
|
| 260 | 294 |
$table_row_data[] = cdm_sob_dto_table_row(cdm_occurrence_field_name_label('individualCount'), $fu_dto->individualCount);
|
| 261 | 295 |
} |
| ... | ... | |
| 275 | 309 |
return cdm_sob_dto_table(t("Field unit"), $table_row_data, $fu_dto, 2);
|
| 276 | 310 |
} |
| 277 | 311 |
|
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/** |
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* Compose a table of details for a DerivedUnitDTO. |
|
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* |
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* The resulting DOM block level element will have a header line and details. |
|
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* |
|
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* compose_hook() implementation |
|
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* |
|
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* @param object $du_dto |
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* the CDM DerivedUnitDTO |
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* @param bool $compact_mode |
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* Currently unused, |
|
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* |
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* @return array |
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* The render array for the DerivedUnitDTO |
|
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* |
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* @ingroup compose |
|
| 328 |
*/ |
|
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function compose_cdm_derived_unit_dto_details($du_dto, $compact_mode = FALSE) {
|
|
| 330 |
|
|
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$table_row_data = sob_dto_details_rows($du_dto, $compact_mode); |
|
| 332 |
|
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| 333 |
if (isset_not_empty($du_dto->characterData)) {
|
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$table_row_data[] = cdm_sob_dto_table_row( |
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cdm_occurrence_field_name_label('characterData'),
|
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| 336 |
icon_link(path_to_specimen($du_dto->uuid), '', FALSE), false); |
|
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} |
|
| 338 |
|
|
| 339 |
return cdm_sob_dto_table(t("Field unit"), $table_row_data, $du_dto, 2);
|
|
| 340 |
} |
|
| 341 |
|
|
| 278 | 342 |
/** |
| 279 | 343 |
* Compose an render array from a CDM GatheringDTO. |
| 280 | 344 |
* |
| ... | ... | |
| 430 | 494 |
*/ |
| 431 | 495 |
function compose_cdm_derived_unit_dto_storage_details($sob_dto, $compact_mode = FALSE) {
|
| 432 | 496 |
|
| 433 |
$table_row_data = [];
|
|
| 497 |
$table_row_data = sob_dto_details_rows($sob_dto, $compact_mode);
|
|
| 434 | 498 |
|
| 499 |
if (isset($sob_dto->accessionNumber)) {
|
|
| 500 |
$table_row_data[] = cdm_sob_dto_table_row( |
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| 501 |
cdm_occurrence_field_name_label('accessionNumber'),
|
|
| 502 |
$sob_dto->accessionNumber); |
|
| 503 |
} |
|
| 435 | 504 |
if (isset($sob_dto->collection)) {
|
| 436 | 505 |
$table_row_data[] = cdm_sob_dto_table_row( |
| 437 | 506 |
cdm_occurrence_field_name_label('collection'),
|
| ... | ... | |
| 443 | 512 |
cdm_occurrence_field_name_label('storedUnder'),
|
| 444 | 513 |
render_taxon_or_name($taxon_name, path_to_name($taxon_name->uuid))); |
| 445 | 514 |
} |
| 446 |
if (isset($sob_dto->storedUnder)) {
|
|
| 447 |
$taxon_name = cdm_ws_get(CDM_WS_PORTAL_NAME, array($sob_dto->storedUnder->uuid)); |
|
| 448 |
$table_row_data[] = cdm_sob_dto_table_row( |
|
| 449 |
cdm_occurrence_field_name_label('storedUnder'),
|
|
| 450 |
render_taxon_or_name($taxon_name, path_to_name($taxon_name->uuid))); |
|
| 451 |
} |
|
| 452 | 515 |
return cdm_sob_dto_table(t('Storage'), $table_row_data, $sob_dto, 1);
|
| 453 | 516 |
} |
| 454 | 517 |
|
Also available in: Unified diff
ref #7599 ref #6866 specimen details tables additional data for field units and derived units