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6657531f
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Andreas Kohlbecker
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<?php
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/**
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* @file
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* Page theming functions.
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*
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* @copyright
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* (C) 2007-2012 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this module are subject to the Mozilla
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* Public License Version 1.1.
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* @see http://www.mozilla.org/MPL/MPL-1.1.html
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*/
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/**
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* Returns HTML for the default title of a taxon page.
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* * The returned title is a formatted taxon name.
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*
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* @param array $variables
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* An associative array containing:
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* - taxon: The taxon name being formatted for the title.
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* - uuid: UUID for the taxon.
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*
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* @ingroup themeable
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*/
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function theme_cdm_taxon_page_title($variables) {
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$taxon = $variables['taxon'];
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$uuid = $variables['uuid'];
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RenderHints::pushToRenderStack('taxon_page_title');
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$referenceUri = '';
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$out = '';
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if (isset($taxon->name->nomenclaturalReference)) {
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$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid));
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}
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$out .= theme('cdm_taxonName', array(
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'taxonName' => $taxon->name,
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'nameLink' => NULL,
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'refenceLink' => $referenceUri,
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'show_annotations' => FALSE,
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));
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RenderHints::popFromRenderStack();
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return '<span class="' . $taxon->class . '">' . $out . '</span>';
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}
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/**
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* Returns HTML for the default title for a name page.
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*
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* The returned title is a formatted name.
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*
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* @param array $variables
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* An associative array containing:
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* - taxon_name: The taxon name object.
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*
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* @ingroup themeable
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*/
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function theme_cdm_name_page_title($variables) {
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$taxon_name = $variables['taxon_name'];
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RenderHints::pushToRenderStack('taxon_page_title');
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if (isset($taxon_name->nomenclaturalReference)) {
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$referenceUri = url(path_to_reference($taxon_name->nomenclaturalReference->uuid));
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}
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$out = '<span class="' . $taxon_name->class . '">' . theme('cdm_taxonName', array(
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'taxonName' => $taxon_name,
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'nameLink' => NULL,
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'refenceLink' => $referenceUri,
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'show_annotations' => FALSE,
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)) . '</span>';
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RenderHints::popFromRenderStack();
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return $out;
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}
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/**
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* Returns HTML for a taxon page.
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*
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* A wrapper function that groups available information to show by default,
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* when a taxon page is requested by the browser.
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* Individual themeing has to decide what this page should include (see methods
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* beneath) and what information should go into tabs or should not be shown
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* at all.
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*
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* It is headed by the name of the accepted taxon without author and reference.
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*
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* @param array $variables
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* An associative array containing:
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* - taxon: The taxon object for which to theme the page.
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* - page_part: Name of the part to display, valid values are:
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* 'description', 'images', 'synonymy', 'all'.
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*
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* @ingroup themeable
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*/
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function theme_cdm_taxon_page($variables) {
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$taxon = $variables['taxon'];
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$page_part = $variables['page_part'];
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global $theme;
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$tabsToDisplay = variable_get('cdm_taxonpage_tabs_visibility', unserialize(TAXONPAGE_VISIBILITY_OPTIONS_DEFAULT));
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$page_part = variable_get('cdm_dataportal_taxonpage_tabs', 1) ? $page_part : 'all';
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$hideTabs = array();
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// --- GET Images --- //
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$mediaQueryParameters = array(
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"type" => "ImageFile",
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);
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$selectShowMedia = variable_get('cdm_dataportal_show_media', 0);
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if ($selectShowMedia == 0) {
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$media = cdm_ws_get(CDM_WS_PORTAL_TAXON_MEDIA, array(
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$taxon->uuid,
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), queryString($mediaQueryParameters));
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}
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else {
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$media = cdm_ws_get(CDM_WS_PORTAL_TAXON_SUBTREE_MEDIA, array(
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$taxon->uuid,
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), queryString($mediaQueryParameters));
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}
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if (!isset($media[0]) || ($tabsToDisplay["Images"] == '0')) {
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$hideTabs[] = theme('cdm_taxonpage_tab', array('tabname' => 'Images'));
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}
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// HideImage flag depending on administative preset.
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$hideImages = FALSE;
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if (variable_get('image_hide_rank', '0') != '0') {
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$rankCompare = rank_compare($taxon->name->rank->uuid, variable_get('image_hide_rank', '-99'));
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$hideImages = ($rankCompare > -1);
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}
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// --- GET specimensOrObservations --- //
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7a2a14b3
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Andreas Kohlbecker
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$specimensOrObservations = cdm_ws_get(CDM_WS_TAXON, array( $taxon->uuid, 'specimensOrObservations'));
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6657531f
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Andreas Kohlbecker
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$specimensOrObservationsCount = is_array($specimensOrObservations) ? count($specimensOrObservations) : 0;
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if ($specimensOrObservationsCount == 0 || ($tabsToDisplay["Specimens"] == '0')) {
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$hideTabs[] = theme('cdm_taxonpage_tab', array('tabname' => 'Specimens'));
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}
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// --- GET polytomousKeys --- //
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$polytomousKeysPager = cdm_ws_get(CDM_WS_POLYTOMOUSKEY, NULL, "findByTaxonomicScope=$taxon->uuid");
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$identificationKeyCount = 0;
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if ($polytomousKeysPager) {
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$identificationKeyCount += $polytomousKeysPager->count;
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}
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if ($identificationKeyCount == 0 || ($tabsToDisplay["Keys"] == '0')) {
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$hideTabs[] = theme('cdm_taxonpage_tab', array('tabname' => 'Keys'));
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}
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if ($tabsToDisplay["Synonymy"] == '0') {
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$hideTabs[] = theme('cdm_taxonpage_tab', array('tabname' => 'Synonymy'));
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}
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// -------------------------------------------- //
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// Hide tabs.
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$tabhide_js = '';
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foreach ($hideTabs as $tabText) {
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$tabhide_js .= "jQuery('.tabs.primary').children('li').children('a:contains(\"$tabText\")').hide();\n";
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}
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drupal_add_js("
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jQuery(document).ready(function(){
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$tabhide_js
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});", array('type' => 'inline'));
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$out = '';
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$out .= theme('cdm_back_to_search_result_button');
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// var_dump(variable_get('cdm_dataportal_display_is_accepted_for',
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// CDM_DATAPORTAL_DISPLAY_IS_ACCEPTED_FOR));
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if (variable_get('cdm_dataportal_display_is_accepted_for', CDM_DATAPORTAL_DISPLAY_IS_ACCEPTED_FOR)) {
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$out .= theme('cdm_acceptedFor', 'page_general');
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}
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// --- PAGE PART: DESCRIPTION --- //
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if ($page_part == 'description' || $page_part == 'all') {
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$markerTypesEmpty = array();
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$markerTypesEmpty['markerTypes'] = '';
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// Retrieve all descriptions for the taxon.
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$taxonDescriptions = cdm_ws_get(CDM_WS_PORTAL_TAXON_DESCRIPTIONS, $taxon->uuid, queryString($markerTypesEmpty));
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$nonStructuredDescriptions = array();
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if ($taxonDescriptions != NULL) {
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foreach ($taxonDescriptions as $taxonDescription) {
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// Check if structured description.
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$hasStructuredData = cdm_ws_get(CDM_WS_DESCRIPTION_HAS_STRUCTRURED_DATA, $taxonDescription->uuid);
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if (isset($hasStructuredData->Boolean)) {
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$hasStructuredData = $hasStructuredData->Boolean == 'TRUE';
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}
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if ($hasStructuredData) {
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$structured_description_featuretree_uuid = variable_get(CDM_DATAPORTAL_STRUCTURED_DESCRIPTION_FEATURETREE_UUID, FALSE);
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if($structured_description_featuretree_uuid) {
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// if a feature tree for natural language generation has been defined use it,
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// otherwise natural language generation is skipped
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$naturallanguage_textData = cdm_ws_get(CDM_WS_DESCRIPTION_NATURALLANGUAGE_DESCRIPTION, array(
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$taxonDescription->uuid,
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$structured_description_featuretree_uuid,
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));
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if (!isset($naturallanguage_textData)) {
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drupal_set_message(
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t(
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"The 'FeatureTree' for the generation of natural language representations is not configured correctly,"
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." please select a 'FeatureTree' in the !settings",
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array(
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'!settings' => l(t('CDM Dataportal Settings'), 'admin/config/cdm_dataportal/layout/taxon'))
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),
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'warning');
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} else {
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$taxonDescription->elements = NULL;
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$taxonDescription->elements = array(
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$naturallanguage_textData,
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);
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}
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}
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}
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$nonStructuredDescriptions[] = $taxonDescription;
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}
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// Release memory.
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$taxonDescriptions = NULL;
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}
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$mergedTrees = cdm_ws_descriptions_by_featuretree(get_profile_featureTree(), $nonStructuredDescriptions, variable_get('cdm_dataportal_descriptions_separated', FALSE));
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$out .= '<div id="general">';
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$out .= theme('cdm_taxon_page_profile', array(
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'taxon' => $taxon,
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'mergedTrees' => $mergedTrees,
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'media' => $media,
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'hideImages' => $hideImages,
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));
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$out .= '</div>';
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}
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// --- PAGE PART: IMAGES --- //
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if ((!$hideImages && $page_part == 'images' || $page_part == 'all')) {
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$out .= '<div id="images">';
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if ($page_part == 'all') {
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$out .= '<h2>' . t('Images') . '</h2>';
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}
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// Get the image gallery as configured by the admin.
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$taxon_image_gallery = call_user_func_array('taxon_image_gallery_' . variable_get('image_gallery_viewer', 'default'), array(
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$taxon,
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$media,
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));
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$out .= $taxon_image_gallery;
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$out .= '</div>';
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}
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// --- PAGE PART: SYNONYMY --- //
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if (($page_part == 'synonymy' || $page_part == 'all')) {
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$out .= '<div id="synonymy">';
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if ($page_part == 'all') {
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$out .= '<h2>' . t('Synonymy') . '</h2>';
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}
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$addAcceptedTaxon = variable_get('cdm_dataportal_nomref_in_title', CDM_DATAPORTAL_NOMREF_IN_TITLE);
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$out .= theme('cdm_taxon_page_synonymy', array('taxon' => $taxon, 'addAcceptedTaxon' => $addAcceptedTaxon));
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$out .= '</div>';
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}
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// --- PAGE PART: SPECIMENS --- //
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if ($specimensOrObservationsCount > 0 && ($page_part == 'specimens' || $page_part == 'all')) {
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$out .= '<div id="specimens">';
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if ($page_part == 'all') {
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$out .= '<h2>' . t('Specimens') . '</h2>';
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}
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$out .= theme('cdm_taxon_page_specimens', array('taxon' => $taxon));
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$out .= '</div>';
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}
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// --- PAGE PART: KEYS --- //
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if ($identificationKeyCount > 0 && ($page_part == 'keys' || $page_part == 'all')) {
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$out .= '<div id="keys">';
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if ($page_part == 'all') {
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$out .= '<h2>' . t('Keys') . '</h2>';
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}
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$out .= theme('cdm_block_IdentificationKeys', array('taxonUuid' => $taxon->uuid));
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$out .= '</div>';
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}
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return $out;
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}
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/**
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* Returns HTML containing descriptive data and preferred picture.
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*
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* Outputs all descriptive data and shows the preferred picture of the
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* accepted taxon.
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*
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* @param array $variables
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* An associative array containing:
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* - taxon
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* - mergedTrees
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* - media:
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* - hideImages
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*
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* @ingroup themeable
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*/
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function theme_cdm_taxon_page_profile($variables) {
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$taxon = $variables['taxon'];
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$mergedTrees = $variables['mergedTrees'];
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$media = $variables['media'];
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$hideImages = $variables['hideImages'];
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$out = '';
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if (variable_get('cdm_dataportal_show_default_image', FALSE) && !$hideImages) {
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// Preferred image hardcoded for testing.
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310 |
5003e934
|
Andreas Kohlbecker
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$defaultRepresentationPart = new stdClass();
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311 |
6657531f
|
Andreas Kohlbecker
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$defaultRepresentationPart->width = 184;
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$defaultRepresentationPart->height = 144;
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$defaultRepresentationPart->uri = drupal_get_path('theme', 'palmweb_2') . '/images/no_picture.png';
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// Preferred image size 184px × 144.
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$imageMaxExtend = 184;
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317 |
347d2c07
|
Andreas Kohlbecker
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$out .= '<div id="taxonProfileImage">' . theme('cdm_preferredImage', array(
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318 |
6657531f
|
Andreas Kohlbecker
|
'media' => $media,
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'defaultRepresentationPart' => $defaultRepresentationPart,
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'imageMaxExtend' => $imageMaxExtend,
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)) . '</div>';
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}
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// Description TOC.
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325 |
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$out .= theme('cdm_featureTreeTOCs', array('mergedTrees' => $mergedTrees));
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// Description.
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328 |
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$out .= theme('cdm_featureTrees', array('mergedTrees' => $mergedTrees, 'taxon' => $taxon));
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return $out;
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|
|
}
|
332 |
|
|
|
333 |
|
|
/**
|
334 |
|
|
* @todo Please document this function.
|
335 |
|
|
* @see http://drupal.org/node/1354
|
336 |
|
|
*/
|
337 |
|
|
function theme_cdm_taxon_page_specimens($variables) {
|
338 |
|
|
$out = '';
|
339 |
|
|
$taxon = $variables['taxon'];
|
340 |
|
|
RenderHints::pushToRenderStack('taxon_page_specimens');
|
341 |
|
|
|
342 |
|
|
$specimensOrObservations = cdm_ws_get(CDM_WS_TAXON, array(
|
343 |
|
|
$taxon->uuid,
|
344 |
7a2a14b3
|
Andreas Kohlbecker
|
'specimensOrObservations',
|
345 |
6657531f
|
Andreas Kohlbecker
|
));
|
346 |
|
|
|
347 |
|
|
// Collect media (fieldObjectMedia, derivedUnitMedia) and add as fields.
|
348 |
|
|
foreach ($specimensOrObservations as &$occurrence) {
|
349 |
|
|
$occurrence->_fieldObjectMedia = cdm_ws_get(CDM_WS_DERIVEDUNIT_FACADE, array(
|
350 |
|
|
$occurrence->uuid,
|
351 |
|
|
'fieldObjectMedia',
|
352 |
|
|
));
|
353 |
|
|
$occurrence->_derivedUnitMedia = cdm_ws_get(CDM_WS_DERIVEDUNIT_FACADE, array(
|
354 |
|
|
$occurrence->uuid,
|
355 |
|
|
'derivedUnitMedia',
|
356 |
|
|
));
|
357 |
|
|
/*
|
358 |
|
|
$derivedUnitFacde = cdm_ws_get(CDM_WS_DERIVEDUNIT_FACADE,
|
359 |
|
|
array($descriptionElement->associatedSpecimenOrObservation->uuid) );
|
360 |
|
|
$descriptionElement->_titleCache = $derivedUnitFacde->titleCache;
|
361 |
|
|
*/
|
362 |
|
|
}
|
363 |
|
|
|
364 |
|
|
if (count($specimensOrObservations) > 0) {
|
365 |
|
|
$occurrenceQuery = cdm_ws_get(CDM_WS_GEOSERVICE_OCCURRENCEMAP, $taxon->uuid);
|
366 |
|
|
|
367 |
|
|
if( isset($occurrenceQuery->String) ) {
|
368 |
|
|
// os=&od=&legend=0&recalculate=false&image=false
|
369 |
|
|
$occurrenceQuery = $occurrenceQuery->String;
|
370 |
|
|
|
371 |
7a2a14b3
|
Andreas Kohlbecker
|
$legendFormatQueryStr = null;
|
372 |
6657531f
|
Andreas Kohlbecker
|
if (variable_get('cdm_dataportal_map_openlayers', 1)) {
|
373 |
|
|
$out .= get_openlayers_map(variable_get('cdm_dataportal_geoservice_display_width', FALSE), variable_get('cdm_dataportal_geoservice_bounding_box', FALSE), $occurrenceQuery, NULL,
|
374 |
7a2a14b3
|
Andreas Kohlbecker
|
$legendFormatQueryStr, variable_get('cdm_dataportal_geoservice_map_caption', ''));
|
375 |
6657531f
|
Andreas Kohlbecker
|
}
|
376 |
|
|
else {
|
377 |
|
|
// get_image_map($width, $occurrenceQuery = FALSE, $distributionQuery = FALSE, $legendFormatQuery = FALSE, $map_caption = FALSE )
|
378 |
|
|
$out .= get_image_map(variable_get('cdm_dataportal_geoservice_display_width', FALSE), variable_get('cdm_dataportal_geoservice_bounding_box', FALSE), $occurrenceQuery, NULL,
|
379 |
7a2a14b3
|
Andreas Kohlbecker
|
$legendFormatQueryStr, variable_get('cdm_dataportal_geoservice_map_caption', ''));
|
380 |
6657531f
|
Andreas Kohlbecker
|
}
|
381 |
|
|
}
|
382 |
|
|
}
|
383 |
|
|
$out_specimenList = '';
|
384 |
|
|
if ($specimensOrObservations) {
|
385 |
|
|
$out_specimenList = '<table class="specimens">';
|
386 |
|
|
$i = 1;
|
387 |
|
|
foreach ($specimensOrObservations as $specimensOrObservation) {
|
388 |
|
|
$i++;
|
389 |
|
|
|
390 |
|
|
$mediaList = array();
|
391 |
|
|
if (is_array($specimensOrObservation->_fieldObjectMedia)) {
|
392 |
|
|
$mediaList = array_merge($mediaList, $specimensOrObservation->_fieldObjectMedia);
|
393 |
|
|
}
|
394 |
|
|
if (is_array($specimensOrObservation->_derivedUnitMedia)) {
|
395 |
|
|
$mediaList = array_merge($mediaList, $specimensOrObservation->_derivedUnitMedia);
|
396 |
|
|
}
|
397 |
|
|
|
398 |
|
|
// --- Render the title cache.
|
399 |
|
|
$out_row = '<tr class="descriptionElement descriptionElement_IndividualsAssociation ' . ($i % 2 ? 'odd' : 'even') . '">';
|
400 |
7a2a14b3
|
Andreas Kohlbecker
|
|
401 |
6657531f
|
Andreas Kohlbecker
|
if ($specimensOrObservation->class != 'FieldObservation') {
|
402 |
7a2a14b3
|
Andreas Kohlbecker
|
// details are loaded on request via the cdm_dynabox by AJAX
|
403 |
|
|
$derived_unit_ws_request = cdm_compose_url('portal/' . CDM_WS_DERIVEDUNIT_FACADE, array( $specimensOrObservation->uuid));
|
404 |
|
|
$label_html = cdm_dynabox(
|
405 |
|
|
$specimensOrObservation->titleCache,
|
406 |
|
|
$derived_unit_ws_request,
|
407 |
|
|
'cdm_derivedUnitFacade',
|
408 |
|
|
'Click for details',
|
409 |
|
|
array('div','div')
|
410 |
|
|
);
|
411 |
6657531f
|
Andreas Kohlbecker
|
}
|
412 |
|
|
else {
|
413 |
|
|
$label_html = $specimensOrObservation->titleCache;
|
414 |
|
|
}
|
415 |
|
|
$out_row .= '<td>' . $label_html . '</td>';
|
416 |
|
|
|
417 |
|
|
// --- Render associated media.
|
418 |
7a2a14b3
|
Andreas Kohlbecker
|
$gallery_html = '';
|
419 |
6657531f
|
Andreas Kohlbecker
|
if (count($mediaList) > 0) {
|
420 |
|
|
$gallery_settings = getGallerySettings(CDM_DATAPORTAL_SPECIMEN_GALLERY_NAME);
|
421 |
|
|
$gallery_name = $specimensOrObservation->uuid;
|
422 |
|
|
$captionElements = array(
|
423 |
|
|
'#uri' => t('open media'),
|
424 |
|
|
);
|
425 |
|
|
|
426 |
|
|
$gallery_html = theme('cdm_media_gallerie', array(
|
427 |
|
|
'mediaList' => $mediaList,
|
428 |
|
|
'galleryName' => $gallery_name,
|
429 |
|
|
'maxExtend' => $gallery_settings['cdm_dataportal_media_maxextend'],
|
430 |
|
|
'cols' => $gallery_settings['cdm_dataportal_media_cols'],
|
431 |
7a2a14b3
|
Andreas Kohlbecker
|
'maxRows' => isset($gallery_settings['cdm_dataportal_media_maxRows']) ? isset($gallery_settings['cdm_dataportal_media_maxRows']) : null,
|
432 |
6657531f
|
Andreas Kohlbecker
|
'captionElements' => $captionElements,
|
433 |
|
|
'mediaLinkType' => 'LIGHTBOX',
|
434 |
|
|
'alternativeMediaUri' => NULL,
|
435 |
|
|
'galleryLinkUri' => NULL,
|
436 |
|
|
));
|
437 |
|
|
}
|
438 |
|
|
$out_row .= '<td>' . $gallery_html . '</td></tr>';
|
439 |
|
|
$out_specimenList .= $out_row;
|
440 |
|
|
}
|
441 |
|
|
$out_specimenList .= '</table>';
|
442 |
|
|
}
|
443 |
|
|
|
444 |
|
|
$out .= $out_specimenList;
|
445 |
|
|
|
446 |
|
|
RenderHints::popFromRenderStack();
|
447 |
|
|
return $out;
|
448 |
|
|
}
|
449 |
|
|
|
450 |
|
|
/**
|
451 |
|
|
* Returns HTML containing the synonymy for the accepted taxon.
|
452 |
|
|
*
|
453 |
|
|
* Shows the whole synonymy for the accepted taxon.
|
454 |
|
|
* The synonymy list is headed by the complete scientific name
|
455 |
|
|
* of the accepted taxon with nomenclatural reference.
|
456 |
|
|
*
|
457 |
|
|
* @param array $variables
|
458 |
|
|
* An associative array containing:
|
459 |
|
|
* - taxon
|
460 |
|
|
* - addAcceptedTaxon
|
461 |
|
|
*
|
462 |
|
|
* @ingroup themeable
|
463 |
|
|
*/
|
464 |
|
|
function theme_cdm_taxon_page_synonymy($variables) {
|
465 |
|
|
$taxon = $variables['taxon'];
|
466 |
|
|
$addAcceptedTaxon = $variables['addAcceptedTaxon'];
|
467 |
|
|
RenderHints::pushToRenderStack('taxon_page_synonymy');
|
468 |
|
|
$synomymie = cdm_ws_get(CDM_WS_PORTAL_TAXON_SYNONYMY, $taxon->uuid);
|
469 |
|
|
$skip = array(
|
470 |
|
|
UUID_BASIONYM,
|
471 |
|
|
);
|
472 |
|
|
$out = '';
|
473 |
|
|
|
474 |
|
|
// Render accepted taxon.
|
475 |
|
|
$referenceUri = '';
|
476 |
|
|
if ($addAcceptedTaxon) {
|
477 |
|
|
if (isset($taxon->name->nomenclaturalReference)) {
|
478 |
|
|
$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid));
|
479 |
|
|
}
|
480 |
|
|
|
481 |
|
|
$accepted_name = '<span class="accepted-name">';
|
482 |
|
|
$accepted_name .= theme('cdm_taxonName', array(
|
483 |
|
|
'taxonName' => $taxon->name,
|
484 |
|
|
'nameLink' => NULL,
|
485 |
|
|
'refenceLink' => $referenceUri,
|
486 |
|
|
));
|
487 |
|
|
$accepted_name .= '</span>';
|
488 |
|
|
|
489 |
|
|
$special_annotations_array = array();
|
490 |
|
|
$special_annotations_array[] = $taxon->name;
|
491 |
|
|
$special_annotations_array[] = $taxon;
|
492 |
|
|
$accepted_name .= theme('cdm_annotations_as_footnotekeys', array('cdmBase_list' => $special_annotations_array, 'footnote_list_key' => RenderHints::getRenderPath() . '-annotations'));
|
493 |
|
|
RenderHints::setFootnoteListKey(RenderHints::getRenderPath() . '-annotations');
|
494 |
|
|
}
|
495 |
|
|
|
496 |
|
|
// Render homotypic synonymy group.
|
497 |
|
|
$hasHomotypicSynonyms = isset($synomymie->homotypicSynonymsByHomotypicGroup[0]->name->uuid);
|
498 |
|
|
|
499 |
|
|
if (!empty($accepted_name)) {
|
500 |
|
|
$out .= $accepted_name;
|
501 |
|
|
}
|
502 |
|
|
|
503 |
|
|
if (!$hasHomotypicSynonyms) {
|
504 |
|
|
// Show typeDesignations even if the homotypic synonymy group is empty.
|
505 |
|
|
$typeDesignations = cdm_ws_get(CDM_WS_PORTAL_TAXON_NAMETYPEDESIGNATIONS, $taxon->uuid);
|
506 |
|
|
if ($typeDesignations) {
|
507 |
|
|
$out .= theme('cdm_typedesignations', array('typeDesignations' => $typeDesignations));
|
508 |
|
|
}
|
509 |
|
|
if (!empty($typeDesignations) || !empty($accepted_name)) {
|
510 |
|
|
// Add empty list for coherent layout.
|
511 |
|
|
$out .= '<ul class="homotypicSynonyms"></ul>';
|
512 |
|
|
}
|
513 |
|
|
}
|
514 |
|
|
else {
|
515 |
|
|
// Render the homotypicSynonymyGroup including the type information.
|
516 |
|
|
$out .= theme('cdm_homotypicSynonymyGroup', array('synonymList' => $synomymie->homotypicSynonymsByHomotypicGroup, 'accepted_taxon_uuid' => $taxon->uuid));
|
517 |
|
|
}
|
518 |
|
|
|
519 |
|
|
// Render accepted taxon heterotypic synonymy groups.
|
520 |
|
|
if ($synomymie->heterotypicSynonymyGroups) {
|
521 |
|
|
foreach ($synomymie->heterotypicSynonymyGroups as $homotypicalGroup) {
|
522 |
|
|
$out .= theme('cdm_heterotypicSynonymyGroup', array('homotypicalGroup' => $homotypicalGroup));
|
523 |
|
|
}
|
524 |
|
|
}
|
525 |
|
|
// Render taxon relationships.
|
526 |
|
|
if (variable_get(CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS, CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS_DEFAULT)) {
|
527 |
|
|
$taxonRelationships = cdm_ws_get(CDM_WS_PORTAL_TAXON_RELATIONS, $taxon->uuid);
|
528 |
|
|
$out .= theme('cdm_taxonRelationships', array('taxonRelationships' => $taxonRelationships, 'focusedTaxon' => $taxon));
|
529 |
|
|
}
|
530 |
|
|
// Render name relationships.
|
531 |
|
|
$name_rels_to_show = variable_get('name_relationships_to_show', NULL);
|
532 |
|
|
$skip = array();
|
533 |
|
|
if ($name_rels_to_show) {
|
534 |
|
|
foreach ($name_rels_to_show as $key => $value) {
|
535 |
|
|
if ($value === 0) {
|
536 |
|
|
$skip[] = $key;
|
537 |
|
|
}
|
538 |
|
|
}
|
539 |
|
|
if (sizeof($name_rels_to_show) != sizeof($skip)) {
|
540 |
|
|
$nameRelationships = cdm_ws_get(CDM_WS_PORTAL_TAXON_TO_NAMERELATIONS, $taxon->uuid);
|
541 |
|
|
$out .= theme('cdm_nameRelationships', array('nameRelationships' => $nameRelationships, 'skipTypes' => $skip));
|
542 |
|
|
}
|
543 |
|
|
}
|
544 |
|
|
|
545 |
|
|
// Render the annontations text for the accepted taxa.
|
546 |
|
|
if ($addAcceptedTaxon) {
|
547 |
|
|
$out .= theme('cdm_footnotes', array('footnoteListKey' => RenderHints::getRenderPath() . '-annotations', 'enclosingTag' => 'li'));
|
548 |
|
|
}
|
549 |
|
|
RenderHints::popFromRenderStack();
|
550 |
|
|
|
551 |
|
|
return $out;
|
552 |
|
|
}
|
553 |
|
|
|
554 |
|
|
/**
|
555 |
|
|
* TODO Implementation of Hook taxon_image_gallery()
|
556 |
|
|
*
|
557 |
|
|
* @param unknown_type $taxon
|
558 |
|
|
* @param unknown_type $media
|
559 |
|
|
*
|
560 |
|
|
* @return unknown_type
|
561 |
|
|
*/
|
562 |
|
|
function taxon_image_gallery_default($taxon, $media) {
|
563 |
|
|
$hasImages = isset($media[0]);
|
564 |
|
|
|
565 |
|
|
if ($hasImages) {
|
566 |
|
|
|
567 |
|
|
$maxExtend = 150;
|
568 |
|
|
$cols = 3;
|
569 |
|
|
$maxRows = FALSE;
|
570 |
|
|
$alternativeMediaUri = NULL;
|
571 |
|
|
/* Comment @WA: was in D5:
|
572 |
|
|
$captionElements = array(
|
573 |
|
|
'title',
|
574 |
|
|
'rights',
|
575 |
|
|
'#uri' => t('open Image'),
|
576 |
|
|
);
|
577 |
|
|
*/
|
578 |
|
|
$captionElements = array(
|
579 |
|
|
'title',
|
580 |
|
|
'description',
|
581 |
|
|
'artist',
|
582 |
|
|
'location',
|
583 |
|
|
'rights',
|
584 |
|
|
'#uri' => t('open Image'),
|
585 |
|
|
);
|
586 |
|
|
$gallery_name = $taxon->uuid;
|
587 |
|
|
$mediaLinkType = 'LIGHTBOX';
|
588 |
|
|
|
589 |
|
|
// $gallery_settings = getGallerySettings(CDM_DATAPORTAL_MEDIA_GALLERY_NAME);
|
590 |
|
|
|
591 |
|
|
$gallery_settings = getGallerySettings(CDM_DATAPORTAL_TAXON_MEDIA_GALLERY_NAME_TAB);
|
592 |
|
|
|
593 |
|
|
$out = '<div class="image-gallerie">';
|
594 |
|
|
$out .= theme('cdm_media_gallerie', array(
|
595 |
|
|
'mediaList' => $media,
|
596 |
|
|
'galleryName' => $gallery_name,
|
597 |
|
|
'maxExtend' => $gallery_settings['cdm_dataportal_media_maxextend'],
|
598 |
|
|
'cols' => $gallery_settings['cdm_dataportal_media_cols'],
|
599 |
|
|
'maxRows' => 0, // Ignore maxrows settings.
|
600 |
|
|
'captionElements' => $captionElements,
|
601 |
|
|
'mediaLinkType' => $mediaLinkType,
|
602 |
|
|
'alternativeMediaUri' => NULL,
|
603 |
|
|
'galleryLinkUri' => NULL,
|
604 |
|
|
'showCaption' => $gallery_settings['cdm_dataportal_show_thumbnail_captions'],
|
605 |
|
|
));
|
606 |
|
|
$out .= '</div>';
|
607 |
|
|
}
|
608 |
|
|
else {
|
609 |
|
|
$out = 'No images available.';
|
610 |
|
|
}
|
611 |
|
|
return $out;
|
612 |
|
|
}
|
613 |
|
|
|
614 |
|
|
/**
|
615 |
|
|
* TODO Implementation of Hook taxon_image_gallery()
|
616 |
|
|
*
|
617 |
|
|
* @param unknown_type $taxon
|
618 |
|
|
* @param unknown_type $media
|
619 |
|
|
*
|
620 |
|
|
* @return unknown_type
|
621 |
|
|
*/
|
622 |
|
|
function taxon_image_gallery_fsi($taxon, $media) {
|
623 |
|
|
$flashLink = isset($media[0]);
|
624 |
|
|
|
625 |
|
|
if ($flashLink) {
|
626 |
|
|
|
627 |
|
|
if (module_exists("fsi_gallery")) {
|
628 |
|
|
$out = theme("fsi_gallery", array('taxon' => $taxon, 'media' => $media));
|
629 |
|
|
}
|
630 |
|
|
else {
|
631 |
|
|
$message = t('In order to use the FSI gallery you must enable the according ') . l(t("module"), "admin/modules");
|
632 |
|
|
drupal_set_message($message, "error");
|
633 |
|
|
$out = '<h3>' . $message . '</h3>';
|
634 |
|
|
}
|
635 |
|
|
}
|
636 |
|
|
else {
|
637 |
|
|
$out = 'No images available.';
|
638 |
|
|
}
|
639 |
|
|
return $out;
|
640 |
|
|
}
|
641 |
|
|
|
642 |
|
|
/**
|
643 |
|
|
* Returns HTML for a single reference page.
|
644 |
|
|
*
|
645 |
|
|
* Renders a page with all data on a single reference.
|
646 |
|
|
*
|
647 |
|
|
* @param array $variables
|
648 |
|
|
* An associative array containing:
|
649 |
|
|
* - reference: Object.
|
650 |
|
|
*
|
651 |
|
|
* @ingroup themeable
|
652 |
|
|
*/
|
653 |
|
|
function theme_cdm_reference_page($variables) {
|
654 |
|
|
$reference = $variables['reference'];
|
655 |
|
|
|
656 |
|
|
$out = '';
|
657 |
|
|
|
658 |
|
|
if (isset($reference->titleCache)) {
|
659 |
|
|
drupal_set_title($reference->titleCache, PASS_THROUGH);
|
660 |
|
|
}
|
661 |
|
|
|
662 |
|
|
$field_order = array(
|
663 |
|
|
"title",
|
664 |
|
|
// "titleCache",
|
665 |
|
|
// "citation",
|
666 |
|
|
"authorTeam",
|
667 |
|
|
"editor",
|
668 |
|
|
"publisher",
|
669 |
|
|
"placePublished",
|
670 |
|
|
"datePublished",
|
671 |
|
|
"year",
|
672 |
|
|
"edition",// Class Book.
|
673 |
|
|
"volume",// Class Article.
|
674 |
|
|
"seriesPart",
|
675 |
|
|
"inReference",
|
676 |
|
|
"nomRefBase", // Class BookSection, Book, Article.
|
677 |
|
|
"pages",// Class Article.
|
678 |
|
|
"series",// Class Article, PrintSeries.
|
679 |
|
|
"school",// Class Thesis.
|
680 |
|
|
"institution",// Class Report.
|
681 |
|
|
"organization",// Class Proceedings.
|
682 |
|
|
"nextVersion",
|
683 |
|
|
"previousVersion",
|
684 |
|
|
"isbn",// Class Book.
|
685 |
|
|
"issn",// Class Journal.
|
686 |
|
|
"uri",
|
687 |
|
|
);
|
688 |
|
|
|
689 |
|
|
$header = array(
|
690 |
|
|
t('Field'),
|
691 |
|
|
t('Value'),
|
692 |
|
|
);
|
693 |
|
|
$table_rows = array();
|
694 |
|
|
|
695 |
|
|
if (!isset($reference->authorTeam)) {
|
696 |
|
|
$authorTeam = cdm_ws_get(CDM_WS_REFERENCE_AUTHORTEAM, $reference->uuid);
|
697 |
|
|
$reference->authorTeam = isset($authorTeam->titleCache) ? $authorTeam->titleCache : '';
|
698 |
|
|
}
|
699 |
|
|
|
700 |
|
|
if (!isset($reference->inReference)) {
|
701 |
|
|
$reference->inReference = cdm_ws_get(CDM_WS_REFERENCE, array(
|
702 |
|
|
$reference->uuid,
|
703 |
|
|
"inReference",
|
704 |
|
|
));
|
705 |
|
|
}
|
706 |
|
|
|
707 |
|
|
foreach ($field_order as $fieldname) {
|
708 |
|
|
|
709 |
|
|
if (isset($reference->$fieldname)) {
|
710 |
|
|
|
711 |
|
|
if ($fieldname == "datePublished") {
|
712 |
|
|
$period = $reference->$fieldname;
|
713 |
|
|
$datePublished = timePeriodToString($period);
|
714 |
|
|
if (isset($datePublished) && $datePublished != '') {
|
715 |
|
|
$table_rows[] = array(
|
716 |
|
|
t(ucfirst(strtolower($fieldname))),
|
717 |
|
|
$datePublished,
|
718 |
|
|
);
|
719 |
|
|
}
|
720 |
|
|
// $datePublished = array(t(ucfirst(strtolower($fieldname))),
|
721 |
|
|
// $datePublished);
|
722 |
|
|
}
|
723 |
|
|
elseif (is_object($reference->$fieldname)) {
|
724 |
|
|
if ($fieldname == "authorTeam") {
|
725 |
|
|
$dump = $reference->$fieldname;
|
726 |
|
|
$teammembers = "teamMembers";
|
727 |
|
|
$team = $dump->$teammembers;
|
728 |
|
|
$nameArray = array();
|
729 |
|
|
|
730 |
|
|
foreach ($team as $member) {
|
731 |
|
|
if (strlen($member->lastname) > 0) {
|
732 |
|
|
$nname = $member->lastname;
|
733 |
|
|
$name = $nname;
|
734 |
|
|
if (strlen($member->firstname) > 0) {
|
735 |
|
|
$vname = $member->firstname;
|
736 |
|
|
$name = $vname . " " . $nname;
|
737 |
|
|
}
|
738 |
|
|
$nameArray[] = $name;
|
739 |
|
|
}
|
740 |
|
|
else {
|
741 |
|
|
if (strlen($member->titleCache) > 0) {
|
742 |
|
|
$nameArray[] = $member->titleCache;
|
743 |
|
|
}
|
744 |
|
|
}
|
745 |
|
|
}
|
746 |
|
|
$value = join($nameArray, ", ");
|
747 |
|
|
}
|
748 |
|
|
elseif ($fieldname == "inReference") {
|
749 |
|
|
$type = $reference->$fieldname->type;
|
750 |
|
|
$value = l($reference->$fieldname->titleCache, path_to_reference($reference->$fieldname->uuid));
|
751 |
|
|
switch ($type) {
|
752 |
|
|
case "Book":
|
753 |
|
|
$fieldname = "in book";
|
754 |
|
|
break;
|
755 |
|
|
case "Journal":
|
756 |
|
|
$fieldname = "in journal";
|
757 |
|
|
break;
|
758 |
|
|
case "Proceedings":
|
759 |
|
|
$fieldname = "in proceedings";
|
760 |
|
|
break;
|
761 |
|
|
}
|
762 |
|
|
}
|
763 |
|
|
else {
|
764 |
|
|
$value = $reference->$fieldname->titleCache;
|
765 |
|
|
}
|
766 |
|
|
if (isset($value) && $value != '') {
|
767 |
|
|
$table_rows[] = array(
|
768 |
|
|
t(ucfirst(strtolower($fieldname))),
|
769 |
|
|
$value,
|
770 |
|
|
);
|
771 |
|
|
}
|
772 |
|
|
}
|
773 |
|
|
else {
|
774 |
|
|
if (isset($reference->$fieldname) && $reference->$fieldname != '') {
|
775 |
|
|
$table_rows[] = array(
|
776 |
|
|
t(ucfirst(strtolower($fieldname))),
|
777 |
|
|
$reference->$fieldname,
|
778 |
|
|
);
|
779 |
|
|
}
|
780 |
|
|
}
|
781 |
|
|
}
|
782 |
|
|
}
|
783 |
|
|
|
784 |
|
|
$out = theme_table(array(
|
785 |
|
|
'header' => array(),
|
786 |
|
|
'rows' => $table_rows,
|
787 |
|
|
'attributes' => array(),
|
788 |
|
|
'caption' => NULL,
|
789 |
|
|
'colgroups' => NULL,
|
790 |
|
|
'sticky' => NULL,
|
791 |
|
|
'empty' => NULL,
|
792 |
|
|
));
|
793 |
|
|
|
794 |
|
|
// Annotations below the table.
|
795 |
|
|
$annotations = cdm_ws_getAnnotationsFor($reference);
|
796 |
|
|
$out .= theme("cdm_annotations", array('annotations' => $annotations));
|
797 |
|
|
|
798 |
|
|
return $out;
|
799 |
|
|
}
|
800 |
|
|
|
801 |
|
|
/**
|
802 |
|
|
* @todo Please document this function.
|
803 |
|
|
* @see http://drupal.org/node/1354
|
804 |
|
|
*/
|
805 |
|
|
function theme_cdm_media_page($variables) {
|
806 |
|
|
$media = $variables['media'];
|
807 |
|
|
$mediarepresentation_uuid = $variables['mediarepresentation_uuid'];
|
808 |
|
|
$partId = $variables['partId'];
|
809 |
|
|
$out = '';
|
810 |
|
|
// Determine which reprresentation and which part to show.
|
811 |
|
|
$representationIdx = 0;
|
812 |
|
|
if ($mediarepresentation_uuid) {
|
813 |
|
|
$i = 0;
|
814 |
|
|
foreach ($media->representations as $representation) {
|
815 |
|
|
if ($representation->uuid == $mediarepresentation_uuid) {
|
816 |
|
|
$representationIdx = $i;
|
817 |
|
|
}
|
818 |
|
|
$i++;
|
819 |
|
|
}
|
820 |
|
|
}
|
821 |
|
|
else {
|
822 |
|
|
$mediarepresentation_uuid = $media->representations[0]->uuid;
|
823 |
|
|
}
|
824 |
|
|
|
825 |
|
|
$partIdx = 0;
|
826 |
|
|
if (!is_numeric($partId)) {
|
827 |
|
|
// Assuming it is an uuid.
|
828 |
|
|
$i = 0;
|
829 |
|
|
foreach ($media->representations[$representationIdx]->parts as $part) {
|
830 |
|
|
if ($part->uuid == $partId) {
|
831 |
|
|
$partIdx = $i;
|
832 |
|
|
}
|
833 |
|
|
$i++;
|
834 |
|
|
}
|
835 |
|
|
}
|
836 |
|
|
else {
|
837 |
|
|
// Assuming it is an index.
|
838 |
|
|
$partIdx = $partId;
|
839 |
|
|
}
|
840 |
|
|
|
841 |
|
|
$media_metadata = cdm_read_media_metadata($media);
|
842 |
|
|
// $title = $media->titleCache;
|
843 |
|
|
$title = $media_metadata['title'];
|
844 |
|
|
|
845 |
|
|
$imageMaxExtend = variable_get('image-page-maxextend', 400);
|
846 |
|
|
|
847 |
|
|
if (!$title) {
|
848 |
|
|
$title = 'Media ' . $media->uuid . '';
|
849 |
|
|
}
|
850 |
|
|
|
851 |
|
|
drupal_set_title($title, PASS_THROUGH);
|
852 |
|
|
|
853 |
|
|
$out .= '<div class="media cdm_media_viewer_image">';
|
854 |
|
|
|
855 |
|
|
$out .= theme('cdm_back_to_image_gallery_button', array());
|
856 |
|
|
$out .= '<div class="viewer">';
|
857 |
|
|
$out .= theme('cdm_openlayers_image', array('mediaRepresentationPart' => $media->representations[$representationIdx]->parts[$partIdx], 'maxExtend' => $imageMaxExtend));
|
858 |
|
|
$out .= '</div>';
|
859 |
|
|
|
860 |
|
|
// General media metadata.
|
861 |
|
|
/*
|
862 |
|
|
$media_metadata = cdm_ws_get(CDM_WS_MEDIA_METADATA, array($media->uuid));
|
863 |
|
|
vardump("PRINTING MEDIA METADATA");
|
864 |
|
|
vardump($media_metadata);
|
865 |
|
|
vardump("PRINTING MEDIA");
|
866 |
|
|
vardump($media);
|
867 |
|
|
*/
|
868 |
|
|
$metadataToPrint = theme('cdm_media_caption', array('media' => $media));
|
869 |
|
|
$out .= $metadataToPrint;
|
870 |
|
|
|
871 |
|
|
// Tabs for the different representations.
|
872 |
|
|
// ul.secondary
|
873 |
|
|
$out .= '<ul class="primary">';
|
874 |
|
|
foreach ($media->representations as $representation) {
|
875 |
|
|
$out .= '<li>' . l($media->representations[$representationIdx]->mimeType, path_to_media($media->uuid, $mediarepresentation_uuid, $partIdx)) . '</li>';
|
876 |
|
|
}
|
877 |
|
|
$out .= '</ul>';
|
878 |
|
|
|
879 |
|
|
// Representation(-part) specific metadata.
|
880 |
|
|
$thumbnailMaxExtend = 100;
|
881 |
|
|
$out .= '<table>';
|
882 |
|
|
$i = 0;
|
883 |
|
|
foreach ($media->representations[$representationIdx]->parts as $part) {
|
884 |
|
|
$out .= '<tr><th>' . t('Part') . ' ' . ($i + 1) . '</th><td>';
|
885 |
|
|
switch ($part->class) {
|
886 |
|
|
case 'ImageFile':
|
887 |
|
|
$out .= $part->width . ' x ' . $part->height . ' - ' . $part->size . 'k';
|
888 |
|
|
break;
|
889 |
|
|
case 'AudioFile':
|
890 |
|
|
case 'MovieFile':
|
891 |
|
|
$out .= t('Duration') . ': ' . $part->duration . 's - ' . $part->size . 'k';
|
892 |
|
|
break;
|
893 |
|
|
default:
|
894 |
|
|
$out .= $part->size . 'k';
|
895 |
|
|
}
|
896 |
|
|
|
897 |
|
|
$out .= '</td><td><a href="' . url(path_to_media($media->uuid, $mediarepresentation_uuid, $i)) . '">' . theme('cdm_media_gallerie_image', array('mediaRepresentationPart' => $part, 'maxExtend' => $thumbnailMaxExtend, 'addPassePartout' => TRUE));
|
898 |
|
|
$i++;
|
899 |
|
|
}
|
900 |
|
|
$out .= '</table>';
|
901 |
|
|
$out .= '</div>';
|
902 |
|
|
|
903 |
|
|
return $out;
|
904 |
|
|
}
|
905 |
|
|
|
906 |
|
|
/**
|
907 |
|
|
* @todo Please document this function.
|
908 |
|
|
* @see http://drupal.org/node/1354
|
909 |
|
|
*/
|
910 |
|
|
function theme_cdm_polytomousKey_page($variables) {
|
911 |
|
|
$polytomousKey = $variables['polytomousKey'];
|
912 |
|
|
drupal_set_title($polytomousKey->titleCache, PASS_THROUGH);
|
913 |
|
|
|
914 |
|
|
$out = theme("cdm_IdentificationKey", array(
|
915 |
|
|
'identificationKey' => $polytomousKey,
|
916 |
|
|
'doLinkToKeyPage' => FALSE,
|
917 |
|
|
'showIdentificationKeyTitle' => FALSE,
|
918 |
|
|
));
|
919 |
|
|
|
920 |
|
|
// Key nodes in linked style.
|
921 |
|
|
$out .= theme('cdm_polytomousKey', array('polytomousKey' => $polytomousKey));
|
922 |
|
|
/*
|
923 |
|
|
FIXME implement node type for keys !!! (wrapping the content in the
|
924 |
|
|
cdm_dataportal.node becomes obsolete then).
|
925 |
|
|
*/
|
926 |
|
|
return '<div id="cdm_dataportal.node">' . $out . '</div>';
|
927 |
|
|
}
|
928 |
|
|
|
929 |
|
|
/**
|
930 |
|
|
* Returns HTML for taxon page tabs.
|
931 |
|
|
*
|
932 |
|
|
* Allows theming of the taxon page tabs.
|
933 |
|
|
*
|
934 |
|
|
* @param array $variables
|
935 |
|
|
* An associative array containing:
|
936 |
|
|
* - tabname
|
937 |
|
|
*
|
938 |
|
|
* @ingroup themeable
|
939 |
|
|
*/
|
940 |
|
|
function theme_cdm_taxonpage_tab($variables) {
|
941 |
|
|
$tabname = $variables['tabname'];
|
942 |
|
|
// TODO replace by using translations or theme the menue tabs itself instead?
|
943 |
|
|
switch ($tabname) {
|
944 |
|
|
default:
|
945 |
|
|
return t($tabname);
|
946 |
|
|
}
|
947 |
|
|
}
|