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Revision 70842e94

Added by Andreas Kohlbecker about 3 years ago

ref #7599 ref #6866 derivation tree optionally without content usable for specimen page

View differences:

modules/cdm_dataportal/cdm_api/webservice_uris.php
151 151 
define('CDM_WS_KML_TAXON_OCCURRENCE', 'kml/taxonOccurrencesFor/$0');
152 152 

  		




  153
  153
  
    
define('CDM_WS_OCCURRENCE', 'occurrence');


  		




  154
  
  
    
define('CDM_WS_OCCURRENCE_FILEUNIT_DTO', 'occurrence/$0/fieldUnitDTO');


  		




  
  154
  
    
define('CDM_WS_OCCURRENCE_FIELD_UNIT_DTOS', 'occurrence/$0/fieldUnitDTOs');


  		




  155
  155
  
    
define('CDM_WS_PORTAL_OCCURRENCE', 'portal/occurrence');


  		




  156
  156
  
    
define('CDM_WS_PORTAL_OCCURRENCE_AS_DTO', 'portal/occurrence/$0/asDTO');


  		




  157
  157
  
    
define('CDM_WS_OCCURRENCE_ACCESSION_NUMBER', 'occurrence/byGeneticAccessionNumber');


  		












  

    
      modules/cdm_dataportal/cdm_dataportal.module
    
  





  448
  448
  
    
  );


  		




  449
  449
  
    
}


  		




  450
  450
  
    

  		




  
  451
  
    
function _add_js_derivation_tree_focus_unit($unit_uuid){


  		




  
  452
  
    
  drupal_add_js('jQuery(document).ready(function() {


  		




  
  453
  
    
      jQuery( ".derived-unit-tree > .uuid\\\\:' . $unit_uuid . ' > .unit-header, .derived-unit-sub-tree > .uuid\\\\:' . $unit_uuid . ' > .unit-header" )


  		




  
  454
  
    
         .css(\'font-weight\', \'bold\')


  		




  
  455
  
    
        .find(".page-link").hide();


  		




  
  456
  
    
    });',


  		




  
  457
  
    
    array('type' => 'inline')


  		




  
  458
  
    
  );


  		




  
  459
  
    
}


  		




  
  460
  
    

  		




  451
  461
  
    
  /**


  		




  452
  462
  
    
   * Provides the markup for an font awesome icon.


  		




  453
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   *


  		












  

    
      modules/cdm_dataportal/includes/occurrences_new.inc
    
  





  33
  33
  
    
 * @see CDM_SPECIMEN_LIST_VIEW_MODE_OPTION_DERIVATE_TREE


  		




  34
  34
  
    
 *


  		




  35
  35
  
    
 */


  		




  36
  
  
    
function compose_specimen_table_top_down_new(array $root_unit_dtos) {


  		




  
  36
  
    
function compose_specimen_table_top_down_new(array $root_unit_dtos, $with_details = true, $focused_unit_uuid = null) {


  		




  37
  37
  
    

  		




  38
  
  
    
  $derivation_tree = derived_units_tree($root_unit_dtos);


  		




  
  38
  
    
  $derivation_tree = derived_units_tree($root_unit_dtos, $with_details);


  		




  39
  39
  
    

  		




  40
  40
  
    
  $render_array = [];


  		




  41
  41
  
    
  $render_array['derived-unit-tree'] = $derivation_tree;


  		




  42
  42
  
    

  		




  43
  43
  
    
  _add_js_derivation_tree('.derived-unit-tree');


  		




  
  44
  
    
  if(is_uuid($focused_unit_uuid)){


  		




  
  45
  
    
    _add_js_derivation_tree_focus_unit($focused_unit_uuid);


  		




  
  46
  
    
  }


  		




  44
  47
  
    

  		




  45
  48
  
    
  return $render_array;


  		




  46
  49
  
    
}


  		




  ......




  57
  60
  
    
 *    An array which can be used in render arrays to be passed to the


  		




  58
  61
  
    
 * theme_table() and theme_list().


  		




  59
  62
  
    
 */


  		




  60
  
  
    
function derived_units_tree(array $root_unit_dtos) {


  		




  
  63
  
    
function derived_units_tree(array $root_unit_dtos, $with_details = true) {


  		




  61
  64
  
    

  		




  62
  65
  
    
  RenderHints::pushToRenderStack('derived-unit-tree');


  		




  63
  66
  
    
  RenderHints::setFootnoteListKey('derived-unit-tree');


  		




  ......




  65
  68
  
    
  $root_items = [];


  		




  66
  69
  
    
  //we need one more item to contain the items of one level (fieldunit, derivate data etc.)


  		




  67
  70
  
    
  foreach ($root_unit_dtos as &$sob_dto) {


  		




  68
  
  
    
    $field_unit_dto_render_array = compose_cdm_specimen_or_observation_dto_details_grid($sob_dto);


  		




  
  71
  
    

  		




  
  72
  
    
    $content_wrapper_markup = '';


  		




  
  73
  
    
    if($with_details){


  		




  
  74
  
    
      $field_unit_dto_render_array = compose_cdm_specimen_or_observation_dto_details_grid($sob_dto);


  		




  
  75
  
    
      $content_wrapper_markup = '<div class="unit-content-wrapper">' // allows to apply the borders between .derived-unit-tree-root and .unit-content


  		




  
  76
  
    
        . '<div class="unit-content">' . drupal_render($field_unit_dto_render_array) . '</div>'


  		




  
  77
  
    
        . '</div>';


  		




  
  78
  
    
    }


  		




  69
  79
  
    
    $root_item = [


  		




  70
  80
  
    
      '#prefix' => '<div class="derived-unit-tree">',


  		




  71
  81
  
    
      '#suffix' => '</div>',


  		




  ......




  79
  89
  
    
      'div-container' => [


  		




  80
  90
  
    
        'root-item-and-sub-tree' => [


  		




  81
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          markup_to_render_array(derived_units_tree_node_header($sob_dto)


  		




  82
  
  
    
            . '<div class="unit-content-wrapper">' // allows to apply the borders between .derived-unit-tree-root and .unit-content


  		




  83
  
  
    
            . '<div class="unit-content">' . drupal_render($field_unit_dto_render_array) . '</div>'


  		




  84
  
  
    
            . '</div>'),


  		




  
  92
  
    
            . $content_wrapper_markup),


  		




  85
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        ],


  		




  86
  94
  
    
      ],


  		




  87
  95
  
    

  		




  ......




  89
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    if (isset($sob_dto->derivatives) && sizeof($sob_dto->derivatives) > 0) {


  		




  90
  98
  
    
      usort($sob_dto->derivatives, 'compare_specimen_or_observation_dtos');


  		




  91
  99
  
    
      // children are displayed in a nested list.


  		




  92
  
  
    
      $root_item['div-container']['root-item-and-sub-tree'][] = derived_units_sub_tree($sob_dto->derivatives);


  		




  
  100
  
    
      $root_item['div-container']['root-item-and-sub-tree'][] = derived_units_sub_tree($sob_dto->derivatives, $with_details);


  		




  93
  101
  
    
    }


  		




  94
  102
  
    
    $root_items[] = $root_item;


  		




  95
  103
  
    
  }


  		




  ......




  105
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 *


  		




  106
  114
  
    
 * @return array


  		




  107
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 */


  		




  108
  
  
    
function derived_units_sub_tree(array $unit_dtos) {


  		




  
  116
  
    
function derived_units_sub_tree(array $unit_dtos, $with_details = true) {


  		




  109
  117
  
    

  		




  110
  
  
    
  $list_items = derived_units_as_list_items($unit_dtos);


  		




  
  118
  
    
  $list_items = derived_units_as_list_items($unit_dtos, $with_details);


  		




  111
  119
  
    

  		




  112
  120
  
    
  $derivation_tree = [


  		




  113
  121
  
    
    '#theme' => 'item_list',


  		




  ......




  131
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 *    An array which can be used in render arrays to be passed to the


  		




  132
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 * theme_table() and theme_list().


  		




  133
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 */


  		




  134
  
  
    
function derived_units_as_list_items(array $root_unit_dtos) {


  		




  
  142
  
    
function derived_units_as_list_items(array $root_unit_dtos, $with_details = true) {


  		




  135
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  136
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  $list_items = [];


  		




  137
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  //we need one more item to contain the items of one level (fieldunit, derivate data etc.)


  		




  ......




  140
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    $item['class'] = ['derived-unit-item ', html_class_attribute_ref($sob_dto)];


  		




  141
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    // data" element of the array is used as the contents of the list item


  		




  142
  150
  
    
    $item['data'] = [];


  		




  143
  
  
    
    $units_render_array = compose_cdm_specimen_or_observation_dto_details_grid($sob_dto);


  		




  
  151
  
    
    $unit_content_markup = '';


  		




  
  152
  
    
    if($with_details){


  		




  
  153
  
    
      $units_render_array = compose_cdm_specimen_or_observation_dto_details_grid($sob_dto);


  		




  
  154
  
    
      $unit_content_markup = '<div class="unit-content derived-unit-details-grid">' . drupal_render($units_render_array) . '</div>';


  		




  
  155
  
    
    }


  		




  144
  156
  
    
    $item['data'] = derived_units_tree_node_header($sob_dto)


  		




  145
  
  
    
      . '<div class="unit-content derived-unit-details-grid">' . drupal_render($units_render_array) . '</div>';


  		




  
  157
  
    
      . $unit_content_markup;


  		




  146
  158
  
    
    if (isset($sob_dto->derivatives) && sizeof($sob_dto->derivatives) > 0) {


  		




  147
  159
  
    
      usort($sob_dto->derivatives, 'compare_specimen_or_observation_dtos');


  		




  148
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      // children are displayed in a nested list.


  		




  149
  
  
    
      $item['children'] = derived_units_as_list_items($sob_dto->derivatives);


  		




  
  161
  
    
      $item['children'] = derived_units_as_list_items($sob_dto->derivatives, $with_details);


  		




  150
  162
  
    
    }


  		




  151
  163
  
    
    $list_items[] = $item;


  		




  152
  164
  
    
  }


  		




  ......




  791
  803
  
    

  		




  792
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    RenderHints::setFootnoteListKey($sob_dto->type . '-' . $sob_dto->uuid);


  		




  793
  805
  
    

  		




  794
  
  
    
    $render_array['sob_details_grid'] = compose_cdm_specimen_or_observation_dto_details_grid($sob_dto);


  		




  
  806
  
    
    $render_array['sob_details_grid'] = [


  		




  
  807
  
    
      '#type' => 'container',


  		




  
  808
  
    
      '#attributes' => [


  		




  
  809
  
    
        'class' => 'derived-unit-details-grid'


  		




  
  810
  
    
      ],


  		




  
  811
  
    
      'children' => compose_cdm_specimen_or_observation_dto_details_grid($sob_dto)


  		




  
  812
  
    
    ];;


  		




  
  813
  
    

  		




  
  814
  
    
    $derivation_tree_roots = cdm_ws_get(CDM_WS_OCCURRENCE_FIELD_UNIT_DTOS, [$sob_dto->uuid]);


  		




  
  815
  
    
    $render_array['derivation_tree_header'] = markup_to_render_array("<h3>Derivation tree</h3>");


  		




  
  816
  
    
    $render_array['derivation_tree'] = compose_specimen_table_top_down_new($derivation_tree_roots, false, $sob_dto->uuid);


  		




  795
  817
  
    

  		




  796
  818
  
    
      /* TODO


  		




  797
  819
  
    
      case 'definition':


  		












  

    
      modules/cdm_dataportal/includes/pages.inc
    
  





  1112
  1112
  
    
{


  		




  1113
  1113
  
    
  drupal_set_title($sob_dto->label);


  		




  1114
  1114
  
    
  RenderHints::pushToRenderStack('specimen_page');


  		




  1115
  
  
    

  		




  1116
  
  
    
  $specimen_render_array = compose_cdm_specimen_or_observation_new($sob_dto);


  		




  1117
  
  
    
  $render_array['specimen_or_observation_detail'] = [


  		




  1118
  
  
    
    '#type' => 'container',


  		




  1119
  
  
    
    '#attributes' => [


  		




  1120
  
  
    
      'class' => 'derived-unit-details-grid'


  		




  1121
  
  
    
    ],


  		




  1122
  
  
    
    'children' => $specimen_render_array


  		




  1123
  
  
    
    ];


  		




  1124
  
  
    

  		




  
  1115
  
    
  $render_array = compose_cdm_specimen_or_observation_new($sob_dto);


  		




  1125
  1116
  
    
  RenderHints::popFromRenderStack();


  		




  1126
  1117
  
    
  return $render_array;


  		




  1127
  1118
  
    
}


  		












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