Revision 6eaec849
implement blast search table for the result
| modules/cdm_dataportal/includes/occurrences.inc | ||
|---|---|---|
| 41 | 41 |
)); |
| 42 | 42 |
$gallery_settings = getGallerySettings(CDM_DATAPORTAL_SPECIMEN_GALLERY_NAME); |
| 43 | 43 |
$captionElements = array( |
| 44 |
'title', |
|
| 44 | 45 |
'#uri' => t('open media'),
|
| 45 | 46 |
); |
| 46 | 47 |
if (isset($specimen->fieldObjectMediaDTO) ) {
|
| ... | ... | |
| 260 | 261 |
} |
| 261 | 262 |
} |
| 262 | 263 |
|
| 264 |
|
|
| 265 |
|
|
| 263 | 266 |
$gallery_html = compose_cdm_media_gallerie(array( |
| 264 | 267 |
'mediaList' => $images, |
| 265 | 268 |
'galleryName' => $galleryName, |
| ... | ... | |
| 268 | 271 |
'maxRows' => isset($gallery_settings['cdm_dataportal_media_maxRows']) ? isset($gallery_settings['cdm_dataportal_media_maxRows']) : null, |
| 269 | 272 |
'captionElements' => $captionElements, |
| 270 | 273 |
'mediaLinkType' => 'LIGHTBOX', |
| 271 |
'alternativeMediaUri' => $alternativeMediaUris, |
|
| 274 |
// 'alternativeMediaUri' => $alternativeMediaUris, |
|
| 275 |
'alternativeMediaUri' => NULL, |
|
| 272 | 276 |
'galleryLinkUri' => NULL, |
| 273 | 277 |
)); |
| 274 | 278 |
} |
| ... | ... | |
| 462 | 466 |
$taxon_name = ''; |
| 463 | 467 |
$name_link = ''; |
| 464 | 468 |
if ($determinationEvent->taxonName) {
|
| 465 |
$taxon_name = $determinationEvent->taxonName; |
|
| 466 |
} else if ($determinationEvent->taxon) {
|
|
| 467 |
$taxon_name = cdm_ws_get(CDM_WS_TAXON . '/$0/name', $determinationEvent->taxon->uuid); |
|
| 468 |
$name_link = path_to_taxon($determinationEvent->taxon->uuid); |
|
| 469 |
$taxon_name = cdm_ws_get(CDM_WS_NAME, $determinationEvent->taxonName->uuid); |
|
| 470 |
$taxon_name->taggedName = cdm_ws_get(CDM_WS_NAME, array($determinationEvent->taxonName->uuid, "taggedName")); |
|
| 471 |
$name_link = path_to_name($determinationEvent->taxonName->uuid); |
|
| 472 |
}else if ($determinationEvent->taxon) {
|
|
| 473 |
$taxon_name = cdm_ws_get(CDM_WS_TAXON . '/$0/name', $determinationEvent->taxon->uuid); |
|
| 474 |
$name_link = path_to_taxon($determinationEvent->taxon->uuid); |
|
| 469 | 475 |
} |
| 470 | 476 |
if ($taxon_name) {
|
| 471 | 477 |
$taxon_html = render_taxon_or_name($taxon_name, $name_link); |
| ... | ... | |
| 1033 | 1039 |
} |
| 1034 | 1040 |
} |
| 1035 | 1041 |
|
| 1036 |
$title = $type_label . ': ' . $specimen_or_observation->titleCache; |
|
| 1042 |
if (isset($typeDesignation)){
|
|
| 1043 |
$title = $type_label . ' for: ' . $typeDesignation->typifiedNames; |
|
| 1044 |
}else{
|
|
| 1045 |
$title = $type_label; |
|
| 1046 |
} |
|
| 1047 |
|
|
| 1037 | 1048 |
$items['data'] = $title; |
| 1038 | 1049 |
|
| 1039 | 1050 |
$groups = array(); |
| ... | ... | |
| 1074 | 1085 |
|
| 1075 | 1086 |
case 'listOfMedia': |
| 1076 | 1087 |
$gallery_settings = getGallerySettings(CDM_DATAPORTAL_SPECIMEN_GALLERY_NAME); |
| 1088 |
|
|
| 1077 | 1089 |
$captionElements = array( |
| 1090 |
'title', |
|
| 1078 | 1091 |
'#uri' => t('open media'),
|
| 1079 | 1092 |
); |
| 1080 | 1093 |
$gallery_html = compose_cdm_media_gallerie(array( |
| ... | ... | |
| 1087 | 1100 |
'mediaLinkType' => 'LIGHTBOX', |
| 1088 | 1101 |
'alternativeMediaUri' => NULL, |
| 1089 | 1102 |
'galleryLinkUri' => NULL, |
| 1103 |
'showCaption' => true |
|
| 1090 | 1104 |
)); |
| 1091 | 1105 |
|
| 1092 | 1106 |
//@_description_list_group_add($groups, cdm_occurrence_field_name_label($field), $gallery_html); |
| ... | ... | |
| 1232 | 1246 |
return $output; |
| 1233 | 1247 |
} |
| 1234 | 1248 |
|
| 1249 |
function compose_table_of_blast_result(array $data){
|
|
| 1250 |
|
|
| 1251 |
foreach ($data as $row_data){
|
|
| 1252 |
$pathToSpecimen = path_to_specimen_by_accession_number($row_data['id']); |
|
| 1253 |
$specimenPageLink = l($row_data['id'], $pathToSpecimen, array('attributes' => array('target' => '_blank')));
|
|
| 1254 |
|
|
| 1255 |
$rows[] = array( |
|
| 1256 |
'data' => array( |
|
| 1257 |
array( |
|
| 1258 |
'data' => $row_data['def'], |
|
| 1259 |
), |
|
| 1260 |
array( |
|
| 1261 |
'data' => $specimenPageLink, |
|
| 1262 |
), |
|
| 1263 |
array( |
|
| 1264 |
'data' => $row_data['hsp_align_length'], |
|
| 1265 |
), |
|
| 1266 |
// array( |
|
| 1267 |
// 'data' => $row_data['midline'], |
|
| 1268 |
// ), |
|
| 1269 |
array( |
|
| 1270 |
'data' => $row_data['hsp_evalue'], |
|
| 1271 |
) |
|
| 1272 |
) |
|
| 1273 |
); |
|
| 1274 |
} |
|
| 1275 |
$tableId = "blast_result_table"; |
|
| 1276 |
$blast_result_table = array( |
|
| 1277 |
"#theme" => "table", |
|
| 1278 |
"#weight" => 2, |
|
| 1279 |
"#header" => array( |
|
| 1280 |
"Name", "id", "Align Length", "e Value"), |
|
| 1281 |
"#rows" => $rows, |
|
| 1282 |
"#attributes" => array( |
|
| 1283 |
"id" => $tableId, |
|
| 1284 |
"border" => 2 |
|
| 1285 |
) |
|
| 1286 |
); |
|
| 1287 |
|
|
| 1288 |
drupal_add_js_rowToggle("#".$tableId);
|
|
| 1289 |
|
|
| 1290 |
$render_array['content'] = $blast_result_table; |
|
| 1291 |
$out = drupal_render($render_array); |
|
| 1292 |
//$blast_result_page-> content = drupal_render($render_array); |
|
| 1293 |
return $out; |
|
| 1294 |
} |
|
| 1295 |
|
|
| 1296 |
|
|
| 1297 |
|
|
Also available in: Unified diff
