Revision 6eaec849
Added by Katja Luther almost 5 years ago
| modules/cdm_dataportal/cdm_dataportal.module | ||
|---|---|---|
| 431 | 431 |
); |
| 432 | 432 |
|
| 433 | 433 |
$items['cdm_dataportal/occurrence'] = array( |
| 434 |
'page callback' => 'cdm_dataportal_specimen_page_view', |
|
| 435 |
'access arguments' => array('access cdm content'),
|
|
| 436 |
'type' => MENU_CALLBACK, |
|
| 437 |
// Expected callback arguments: uuid. |
|
| 438 |
); |
|
| 434 |
'page callback' => 'cdm_dataportal_specimen_page_view',
|
|
| 435 |
'access arguments' => array('access cdm content'),
|
|
| 436 |
'type' => MENU_CALLBACK,
|
|
| 437 |
// Expected callback arguments: uuid.
|
|
| 438 |
);
|
|
| 439 | 439 |
|
| 440 |
$items['cdm_dataportal/specimen/accession_number'] = array( |
|
| 441 |
'page callback' => 'cdm_dataportal_specimen_by_accession_number_page_view', |
|
| 442 |
'access arguments' => array('access cdm content'),
|
|
| 443 |
'type' => MENU_CALLBACK, |
|
| 444 |
// Expected callback arguments: accession number. |
|
| 445 |
); |
|
| 440 | 446 |
$items['cdm_dataportal/named_area'] = array( |
| 441 | 447 |
'page callback' => 'cdm_dataportal_named_area_page_view', |
| 442 | 448 |
'access arguments' => array('access cdm content'),
|
| ... | ... | |
| 499 | 505 |
'access arguments' => array('access cdm content'),
|
| 500 | 506 |
'type' => MENU_DEFAULT_LOCAL_TASK, |
| 501 | 507 |
); |
| 502 |
|
|
| 508 |
if (variable_get(CDM_BLAST)) {
|
|
| 503 | 509 |
$items['cdm_dataportal/search/blast'] = array( |
| 504 | 510 |
'title' => 'Blast', // will be passed through t() |
| 505 | 511 |
'page callback' => 'cdm_dataportal_view_search_blast', |
| 506 | 512 |
'access arguments' => array('access cdm content'),
|
| 507 | 513 |
'type' => MENU_DEFAULT_LOCAL_TASK, |
| 508 | 514 |
); |
| 509 |
|
|
| 515 |
} |
|
| 510 | 516 |
$items['cdm_dataportal/search/taxon_by_description'] = array( |
| 511 | 517 |
'title' => 'By content category', // will be passed through t() |
| 512 | 518 |
'page callback' => 'cdm_dataportal_view_search_taxon_by_description', |
| ... | ... | |
| 815 | 821 |
|
| 816 | 822 |
if (variable_get('cdm_dataportal_show_advanced_search', 1)) {
|
| 817 | 823 |
$block['content'] .= '<div>' . l(t('Advanced Search'), 'cdm_dataportal/search') . '</div>';
|
| 818 |
// $block['content'] .= '<div>' . l(t('Blast Search'), 'cdm_dataportal/search/blast') . '</div>';
|
|
| 824 |
} |
|
| 825 |
if (variable_get(CDM_BLAST)){
|
|
| 826 |
$block['content'] .= '<div>' . l(t('Blast Search'), 'cdm_dataportal/search/blast') . '</div>';
|
|
| 819 | 827 |
} |
| 820 | 828 |
return $block; |
| 821 | 829 |
case '4': |
| ... | ... | |
| 1588 | 1596 |
|
| 1589 | 1597 |
return $taxonpage; |
| 1590 | 1598 |
} |
| 1599 |
function cdm_dataportal_specimen_by_accession_number_page_view($accession_number) |
|
| 1600 |
{
|
|
| 1601 |
if (isset($accession_number)) {
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|
| 1602 |
$specimen_or_observation = cdm_ws_get(CDM_WS_OCCURRENCE_ACCESSION_NUMBER, null, 'accessionNumber=' . $accession_number); |
|
| 1603 |
|
|
| 1604 |
if (isset($specimen_or_observation) && $specimen_or_observation){
|
|
| 1605 |
cdm_dataportal_specimen_page_view($specimen_or_observation->uuid, $specimen_or_observation); |
|
| 1606 |
} |
|
| 1591 | 1607 |
|
| 1608 |
} |
|
| 1609 |
} |
|
| 1592 | 1610 |
/** |
| 1593 | 1611 |
* Creates a specimen page view. |
| 1594 | 1612 |
* @param string $uuid the UUID of the specimen |
| ... | ... | |
| 2085 | 2103 |
} |
| 2086 | 2104 |
} |
| 2087 | 2105 |
|
| 2106 |
function path_to_specimen_by_accession_number($accession_number) {
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|
| 2107 |
|
|
| 2108 |
if (!$accession_number) {
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| 2109 |
return FALSE; |
|
| 2110 |
} |
|
| 2111 |
else {
|
|
| 2112 |
return 'cdm_dataportal/specimen/accession_number/' . $accession_number; |
|
| 2113 |
} |
|
| 2114 |
} |
|
| 2115 |
|
|
| 2088 | 2116 |
function path_to_named_area($uuid) {
|
| 2089 | 2117 |
|
| 2090 | 2118 |
if (!$uuid) {
|
Also available in: Unified diff
implement blast search table for the result