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<?php
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/**
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* @file
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* Bibliography Theming functions.
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*
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* @copyright
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* (C) 2007-2012 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this module are subject to the Mozilla
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* Public License Version 1.1.
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* @see http://www.mozilla.org/MPL/MPL-1.1.html
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*/
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/**
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* Returns html for a bibliography.
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*
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* Used in the Palmae portal.
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*
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* @param array $variables
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* An associative array containing:
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* - descriptionElementsBibliography: the elements to theme for bibliography.
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*
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* @ingroup themeable
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*/
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function theme_cdm_descriptionElementBibliography($variables) {
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$descriptionElementsBibliography = $variables['descriptionElementsBibliography'];
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$listOfReferences = array ();
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// $useDescriptions = cdm_ws_get()
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$markerTypes['markerTypes'] = UUID_MARKERTYPE_USE;
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$useDescriptions = cdm_ws_get(CDM_WS_PORTAL_TAXON_DESCRIPTIONS, substr(strrchr($_GET["q"], '/'), 1), queryString($markerTypes));
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// = substr(strrchr($_GET["q"], '/'), 1);
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// $descout = print_r($useDescriptions);
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foreach ($descriptionElementsBibliography as $descriptionElementsBiblio) {
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foreach ($descriptionElementsBiblio as $descriptionElementBiblio) {
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if (isset($descriptionElementBiblio->sources) && is_array($descriptionElementBiblio->sources)) {
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foreach ($descriptionElementBiblio->sources as $source) {
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$isAlreadySelected = FALSE;
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if (empty($listOfReferences)) {
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$listOfReferences[] = $source;
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}
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else {
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foreach ($listOfReferences as $selectedReference) {
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if (isset($selectedReference->citation->uuid) && isset($source->citation->uuid) && $selectedReference->citation->uuid == $source->citation->uuid) {
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$isAlreadySelected = TRUE;
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}
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}
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// Add the source in the list of reference/ This is to remove
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// duplicates from the Bibliography section.
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if (!$isAlreadySelected) {
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$listOfReferences[] = $source;
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}
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}
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}
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}
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}
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}
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if (!empty($useDescriptions) && is_array($useDescriptions)) {
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foreach ($useDescriptions as $useDescription) {
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if (is_array($useDescription->sources)) {
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foreach ($useDescription->sources as $source) {
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$isAlreadySelected = FALSE;
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if (empty($listOfReferences)) {
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$listOfReferences[] = $source;
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}
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else {
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foreach ($listOfReferences as $selectedReference) {
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if ($selectedReference->citation->uuid == $source->citation->uuid) {
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$isAlreadySelected = TRUE;
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}
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}
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if (!$isAlreadySelected) {
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$listOfReferences[] = $source;
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}
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}
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}
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}
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}
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}
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// Call the reference formatting function, it will do the heavy lifting.
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$out = formatReference_for_Bibliography($listOfReferences);
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return $out;
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}
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/**
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* Formats a reference.
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* Comment @WA @todo use ' instead of " where possible.
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*
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* Used by theme_cdm_descriptionElementBibliography.
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*/
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function formatReference_for_Bibliography($references) {
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$out = '<div id="block-cdm_dataportal-feature-discussion"><a name="bibliography"> </a><H2>Bibliography</H2><div class="content"> <ul class="description">';
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$outTemp = array ();
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foreach ($references as $reference) {
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$referenceString = '';
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$reference_type = isset($reference->citation->type) ? $reference->citation->type : '';
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switch ($reference_type) {
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case "Journal":
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$referenceString .= "<li class=\"descriptionText DescriptionElement\">";
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$numberOfTeamMembers = count($reference->citation->authorTeam->teamMembers);
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$currentRecord = 1;
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if (!empty($reference->citation->authorTeam->teamMembers)) {
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foreach ($reference->citation->authorTeam->teamMembers as $teamMember) {
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if (!empty($teamMember->lastname) && !empty($teamMember->firstname)) {
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if ($currentRecord == 1) {
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$referenceString .= $teamMember->lastname . ", " . $teamMember->firstname;
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}
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elseif ($numberOfTeamMembers != $currentRecord) {
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$referenceString .= " , " . $teamMember->lastname . ", " . $teamMember->firstname;
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}
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else {
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$referenceString .= " & " . $teamMember->lastname . ", " . $teamMember->firstname;
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? ' ' : ". ");
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}
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$currentRecord += 1;
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}
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else {
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if ($numberOfTeamMembers != $currentRecord) {
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$referenceString .= $teamMember->titleCache . " & ";
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}
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else {
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$referenceString .= $teamMember->titleCache;
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? ' ' : ". ");
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}
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$currentRecord += 1;
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}
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}
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}
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else {
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$referenceString .= $reference->citation->authorTeam->titleCache;
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? " " : ". ");
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}
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/*
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else {
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$referenceString .= $teamMember->lastname . ", " . $teamMember->firstname . " ";
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}
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*/
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if (!empty($reference->citation->datePublished->start)) {
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$referenceString .= substr($reference->citation->datePublished->start, 0, 4);
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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}
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$referenceString .= $reference->citation->title . ". " . $reference->citation->publisher;
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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$referenceString .= "</li>";
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break;
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case "Article":
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$referenceString .= "<li class=\"descriptionText DescriptionElement\">";
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$numberOfTeamMembers = 0;
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if(!empty($reference->citation->authorTeam->teamMembers)) {
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$numberOfTeamMembers = count($reference->citation->authorTeam->teamMembers);
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}
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$currentRecord = 1;
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if (!empty($reference->citation->authorTeam->teamMembers)) {
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foreach ($reference->citation->authorTeam->teamMembers as $teamMember) {
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if (!empty($teamMember->lastname) && !empty($teamMember->firstname)) {
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if ($currentRecord == 1) {
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$referenceString .= $teamMember->lastname . ", " . $teamMember->firstname;
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}
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elseif ($numberOfTeamMembers != $currentRecord) {
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$referenceString .= " , " . $teamMember->lastname . ", " . $teamMember->firstname;
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}
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else {
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$referenceString .= " & " . $teamMember->lastname . ", " . $teamMember->firstname;
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? ' ' : ". ");
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}
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$currentRecord += 1;
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}
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else {
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if ($numberOfTeamMembers != $currentRecord) {
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$referenceString .= $teamMember->titleCache . " & ";
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}
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else {
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$referenceString .= $teamMember->titleCache;
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? ' ' : ". ");
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}
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$currentRecord += 1;
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}
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}
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}
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else {
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$referenceString .= $reference->citation->authorTeam->titleCache;
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? " " : ". ");
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}
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/*
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else {
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$referenceString .= $teamMember->lastname . ", " . $teamMember->firstname . " ";
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}
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*/
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if (!empty($reference->citation->datePublished->start)) {
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$referenceString .= substr($reference->citation->datePublished->start, 0, 4);
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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}
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if (!empty($reference->citation->title)) {
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$referenceString .= $reference->citation->title . ". ";
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}
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if (!empty($reference->citation->publisher)) {
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$referenceString .= $reference->citation->publisher;
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}
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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$referenceString .= "</li>";
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break;
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case "Book":
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$referenceString .= "<li class=\"descriptionText DescriptionElement\">";
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if (!empty($reference->citation->authorTeam->teamMembers)) {
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$numberOfTeamMembers = count($reference->citation->authorTeam->teamMembers);
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}
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$currentRecord = 1;
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$isCitationTitleCache = FALSE;
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if (!empty($reference->citation->authorTeam->teamMembers) && $reference->citation->authorTeam->titleCache != "-empty team-") {
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foreach ($reference->citation->authorTeam->teamMembers as $teamMember) {
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if (!empty($teamMember->lastname) && !empty($teamMember->firstname)) {
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if ($numberOfTeamMembers != $currentRecord) {
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$referenceString .= $teamMember->lastname . ", " . $teamMember->firstname . " & ";
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}
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else {
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$referenceString .= $teamMember->lastname . ", " . $teamMember->firstname;
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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}
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$currentRecord += 1;
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}
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else {
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if ($numberOfTeamMembers != $currentRecord) {
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$referenceString .= $teamMember->titleCache . " & ";
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}
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else {
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$referenceString .= $teamMember->titleCache;
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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}
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$currentRecord += 1;
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}
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}
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}
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elseif ($reference->citation->authorTeam->titleCache != "-empty team-") {
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$referenceString .= $reference->citation->authorTeam->titleCache;
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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}
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else {
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244
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$isCitationTitleCache = TRUE;
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$referenceString .= $reference->citation->titleCache;
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}
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247
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if (!empty($reference->citation->datePublished->start)) {
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$referenceString .= substr($reference->citation->datePublished->start, 0, 4);
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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250
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}
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251
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if ($isCitationTitleCache == FALSE && !empty($reference->citation->title)) {
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252
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$referenceString .= $reference->citation->title;
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253
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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254
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}
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255
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if (!empty($reference->citation->publisher)) {
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256
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$referenceString .= $reference->citation->publisher;
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257
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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258
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}
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259
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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260
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$referenceString .= "</li>";
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261
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break;
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262
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263
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case "BookSection":
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264
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$referenceString .= "<li class=\"descriptionText DescriptionElement\">";
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265
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$numberOfTeamMembers = count($reference->citation->authorTeam->teamMembers);
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266
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$currentRecord = 1;
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267
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if (!empty($reference->citation->authorTeam->teamMembers)) {
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268
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foreach ($reference->citation->authorTeam->teamMembers as $teamMember) {
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269
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if (!empty($teamMember->lastname) && !empty($teamMember->firstname)) {
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270
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if ($numberOfTeamMembers != $currentRecord) {
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271
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$referenceString .= $teamMember->lastname . ", " . $teamMember->firstname . " & ";
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272
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}
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273
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else {
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274
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$referenceString .= $teamMember->lastname . ", " . $teamMember->firstname;
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275
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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|
276
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}
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|
277
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$currentRecord += 1;
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|
278
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}
|
|
279
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else {
|
|
280
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if ($numberOfTeamMembers != $currentRecord) {
|
|
281
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$referenceString .= $teamMember->titleCache . " & ";
|
|
282
|
}
|
|
283
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else {
|
|
284
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$referenceString .= $teamMember->titleCache;
|
|
285
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
|
|
286
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}
|
|
287
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$currentRecord += 1;
|
|
288
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}
|
|
289
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}
|
|
290
|
}
|
|
291
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$referenceString .= substr($reference->citation->inReference->datePublished->start, 0, 4) . ". " . $reference->citation->title . ". " . "Pages " . $reference->citation->pages . ". In ";
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292
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$numberOfTeamMembersInReference = count($reference->citation->inReference->authorTeam->teamMembers);
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293
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$currentRecordinReference = 1;
|
|
294
|
if (!empty($reference->citation->inReference->authorTeam->teamMembers)) {
|
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295
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foreach ($reference->citation->inReference->authorTeam->teamMembers as $teamMember) {
|
|
296
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if (!empty($teamMember->lastname) && !empty($teamMember->firstname)) {
|
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297
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if ($numberOfTeamMembers != $currentRecord) {
|
|
298
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$referenceString .= $teamMember->lastname . ", " . $teamMember->firstname . " & ";
|
|
299
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}
|
|
300
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else {
|
|
301
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$referenceString .= $teamMember->lastname . ", " . $teamMember->firstname;
|
|
302
|
$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
|
|
303
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}
|
|
304
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$currentRecord += 1;
|
|
305
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}
|
|
306
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else {
|
|
307
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if ($numberOfTeamMembers != $currentRecord) {
|
|
308
|
$referenceString .= $teamMember->titleCache . " & ";
|
|
309
|
}
|
|
310
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else {
|
|
311
|
$referenceString .= $teamMember->titleCache;
|
|
312
|
$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
|
|
313
|
}
|
|
314
|
$currentRecord += 1;
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|
315
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}
|
|
316
|
}
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|
317
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}
|
|
318
|
|
|
319
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$referenceString .= $reference->citation->inReference->title . ". " . $reference->citation->inReference->publisher . ". " . $reference->citation->inReference->placePublished;
|
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320
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$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? "" : ". ");
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321
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$referenceString .= "</li>";
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|
322
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break;
|
|
323
|
|
|
324
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case "WebPage":
|
|
325
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$referenceString .= "<li class=\"descriptionText DescriptionElement\">" . $reference->citation->titleCache . "</li>";
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326
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break;
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|
327
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|
|
328
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case "Generic":
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|
329
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$referenceString .= "<li class=\"descriptionText DescriptionElement\">";
|
|
330
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$currentRecord = 1;
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|
331
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if (!empty($reference->citation->authorTeam->teamMembers)) {
|
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332
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$numberOfTeamMembers = count($reference->citation->authorTeam->teamMembers);
|
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333
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foreach ($reference->citation->authorTeam->teamMembers as $teamMember) {
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334
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if (!empty($teamMember->lastname) && !empty($teamMember->firstname)) {
|
|
335
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if ($currentRecord == 1) {
|
|
336
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$referenceString .= $teamMember->lastname . ", " . $teamMember->firstname;
|
|
337
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}
|
|
338
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elseif ($numberOfTeamMembers != $currentRecord) {
|
|
339
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$referenceString .= " , " . $teamMember->lastname . ", " . $teamMember->firstname;
|
|
340
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}
|
|
341
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else {
|
|
342
|
$referenceString .= " & " . $teamMember->lastname . ", " . $teamMember->firstname;
|
|
343
|
$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? ' ' : ". ");
|
|
344
|
}
|
|
345
|
$currentRecord += 1;
|
|
346
|
}
|
|
347
|
else {
|
|
348
|
if ($numberOfTeamMembers != $currentRecord) {
|
|
349
|
$referenceString .= $teamMember->titleCache . " & ";
|
|
350
|
}
|
|
351
|
else {
|
|
352
|
$referenceString .= $teamMember->titleCache;
|
|
353
|
$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? ' ' : ". ");
|
|
354
|
}
|
|
355
|
$currentRecord += 1;
|
|
356
|
}
|
|
357
|
}
|
|
358
|
}
|
|
359
|
elseif (!empty($reference->citation->authorTeam->titleCache)) {
|
|
360
|
$referenceString .= $reference->citation->authorTeam->titleCache;
|
|
361
|
$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? " " : ". ");
|
|
362
|
}
|
|
363
|
else {
|
|
364
|
$referenceString .= $reference->citation->titleCache;
|
|
365
|
$referenceString .= ((str_endsWith($out, ".") || str_endsWith($out, ". ")) ? " " : ". ");
|
|
366
|
}
|
|
367
|
/*
|
|
368
|
else {
|
|
369
|
$referenceString .= $teamMember->lastname . ", " . $teamMember->firstname . " ";
|
|
370
|
}
|
|
371
|
*/
|
|
372
|
if (!empty($reference->citation->datePublished->start)) {
|
|
373
|
$referenceString .= substr($reference->citation->datePublished->start, 0, 4);
|
|
374
|
$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? " " : ". ");
|
|
375
|
}
|
|
376
|
$referenceString .= $reference->citation->title . ". " . (isset($reference->citation->publisher) ? $reference->citation->publisher : '');
|
|
377
|
$referenceString .= ((str_endsWith($referenceString, ".") || str_endsWith($referenceString, ". ")) ? " " : ". ");
|
|
378
|
$referenceString .= ((str_endsWith($referenceString, ".")) ? " " : "");
|
|
379
|
$referenceString .= "</li>";
|
|
380
|
break;
|
|
381
|
|
|
382
|
default:
|
|
383
|
/*
|
|
384
|
$author_team = cdm_ws_get(CDM_WS_REFERENCE_AUTHORTEAM, $reference->citation->uuid);
|
|
385
|
|
|
386
|
if(!empty($author_team->titleCache)) {
|
|
387
|
$referenceString.= print_r($reference->citation);
|
|
388
|
$referenceString .= '<li class="descriptionText DescriptionElement">' . "<b>" . $reference->citation->title . ":" . "</b>" . $author_team->titleCache . '</li>';
|
|
389
|
}
|
|
390
|
else {
|
|
391
|
$referenceString .= '<li class="descriptionText DescriptionElement">' ."<b>" . $reference->citation->titleCache . "</b>" . '</li>';
|
|
392
|
}
|
|
393
|
if ($referenceCitation){
|
|
394
|
$sourceRefs = $referenceCitation;
|
|
395
|
// $referenceString .= "[titleccache] " . $descriptionElementBiblio->feature->titleCache . "[/titlecache]";
|
|
396
|
// $referenceString .= "[Class] " . $descriptionElementBiblio->class . "[/class]";
|
|
397
|
// $referenceString .= "[sourceref]" . $sourceRefs . "[/sourceRef]";
|
|
398
|
}
|
|
399
|
*/
|
|
400
|
break;
|
|
401
|
}
|
|
402
|
$outTemp[] = $referenceString;
|
|
403
|
}
|
|
404
|
sort($outTemp);
|
|
405
|
foreach ($outTemp as $refString) {
|
|
406
|
$out .= $refString;
|
|
407
|
}
|
|
408
|
|
|
409
|
$out .= "</ul></div></div>";
|
|
410
|
return $out;
|
|
411
|
}
|