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<?php
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// $Id$
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/**
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* Overrides of generic themeing functions in cdm_datportal.theme.php
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*/
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/**
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* The description page is supposed to be the front page for a taxon.
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*
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* @param TaxonTO $taxonTO
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* @return
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*/
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function garland_cichorieae_cdm_taxon_page_profile($taxon, $mergedTrees, $media, $hideImages = false){
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RenderHints::pushToRenderStack('taxon_page_description');
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// description TOC
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$out = theme('cdm_featureTreeTOCs', $mergedTrees);
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// preferred image
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// 2 lines hard coded for testing
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if( variable_get('cdm_dataportal_show_default_image', false) && !$hideImages){
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//$defaultPreferredImage = drupal_get_path('theme', 'garland_cichorieae').'/images/nopic_400x300.jpg';
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$defaultRepresentationPart = false;
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$defaultRepresentationPart->width = 400;
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$defaultRepresentationPart->height = 300;
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$defaultRepresentationPart->uri = drupal_get_path('theme', 'garland_cichorieae').'/images/nopic_400x300_4x3cm.jpg';
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$imageUriParams = '&width=400&height=300&quality=95&format=jpeg';
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$imageMaxExtend = 400;
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$out .= '<div id="taxonProfileImage">'.theme('cdm_preferredImage', $media, $defaultRepresentationPart, $imageMaxExtend, $imageUriParams).'</div>';
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}
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// description
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$out .= theme('cdm_featureTrees', $mergedTrees, $taxon);
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RenderHints::popFromRenderStack();
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return $out;
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}
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/*
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function garland_cichorieae_cdm_descriptionElementTextData($element){
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$description = str_replace("\n", "<br/>", $element->multilanguageText_L10n->text);
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$referenceCitation = '';
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$sourceRefs = '';
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if($element->reference){
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// disabling references for cichorieae description Elements because they all have faulty references
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$referenceCitation = '; '.theme('cdm_fullreference', $element->reference, TRUE);
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}
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//return '<p class="descriptionText">' . $description . $referenceCitation.'</p>';
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foreach($element->sources as $source){
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$referenceCitation = theme('cdm_DescriptionElementSource', $source);
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if($description && strlen($description) > 0 && $referenceCitation ){
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$sourceRefs .= ' ('.$referenceCitation.')' ;
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/*
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* TODO: why does not belongs this code to the cichorieae theme ??
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*
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}else if ($referenceCitation){
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$sourceRefs = $referenceCitation;
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}
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}
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return '<p class="descriptionText">' . $description . $sourceRefs . '</p>';
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}
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*/
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function garland_cichorieae_cdm_descriptionElementTextData($element, $asListElement, $feature_uuid){
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$description = str_replace("\n", "<br/>", $element->multilanguageText_L10n->text);
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$sourceRefs = '';
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$result = array();
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$res_author;
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$res_date;
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$no_links = false;
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$default_theme = variable_get('theme_default', 'garland_cichorieae');
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if (($default_theme == 'flora_malesiana' || $default_theme == 'flore_afrique_centrale')
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&& $element->feature->titleCache == 'Citation'){
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$asListElement = true;
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}elseif ($element->feature->uuid == UUID_CHROMOSOMES_NUMBERS){
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$asListElement = true;
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}else{
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$asListElement = false;
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}
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//printing annotations footnotes
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$annotation_fkeys = theme('cdm_annotations_as_footnotekeys', $element, $feature_uuid);
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if ($feature_uuid == UUID_NAME_USAGE || $feature_uuid == UUID_CHROMOSOMES){
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$no_links = true;
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}
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if(is_array($element->sources)){
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foreach($element->sources as $source){
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//initialize some variables
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if ($feature_uuid == UUID_NAME_USAGE){
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$referenceCitation = cdm_ws_get(CDM_WS_NOMENCLATURAL_REFERENCE_CITATION,
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array($source->citation->uuid),
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"microReference=".urlencode($source->citationMicroReference));
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$referenceCitation = $referenceCitation->String;
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}else{
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$referenceCitation = theme('cdm_DescriptionElementSource',
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$source,
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($no_links) ? false : true);
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}
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if($description && strlen($description) > 0 && $referenceCitation ){
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$sourceRefs .= ' ('.$referenceCitation.')' ;
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}else if ($referenceCitation){
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$sourceRefs = $referenceCitation;
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}
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//generate the output
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if(strlen($sourceRefs) > 0){
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$sourceRefs = '<span class="sources">' . $sourceRefs . '</span>';
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}
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if ($source->nameUsedInSource->uuid && ($feature_uuid != UUID_NAME_USAGE)){
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//do a link to name page
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$name_used_in_source_link_to_show = l($source->nameUsedInSource->titleCache,
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path_to_name($source->nameUsedInSource->uuid),
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array(), NULL, NULL, FALSE ,TRUE);
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}else if ($source->nameUsedInSource->uuid && ($feature_uuid == UUID_NAME_USAGE)){
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//do not do link for NAME USAGE feature
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$name_used_in_source_link_to_show = $source->nameUsedInSource->titleCache;
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}else if (strlen($source->nameUsedInSource->originalNameString) > 0){
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//show a text without link
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$name_used_in_source_link_to_show = $source->nameUsedInSource->originalNameString;
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}
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if($asListElement && ($feature_uuid == UUID_NAME_USAGE)){
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$out = '<li class="descriptionText">' . $name_used_in_source_link_to_show;
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//adding ":" if necesary
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if ($name_used_in_source_link_to_show && ($description || $sourceRefs)){
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$out .= ': ';
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}
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$out .= $description . $sourceRefs .theme('cdm_annotations_as_footnotekeys', $element, $feature_uuid) . $annotation_fkeys . '</li>';
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}else if ($asListElement){
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$out = '<li class="descriptionText">' . $name_used_in_source_link_to_show;
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//adding ":" if necesary
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if ($name_used_in_source_link_to_show && ($description || $sourceRefs)){
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$out .= ': ';
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}
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$out .= $description . $sourceRefs . theme('cdm_annotations_as_footnotekeys', $element, $feature_uuid) . $annotation_fkeys . '</li>';
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//special handling for flora malesiana TODO: possible better way to implement this case?
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}else{
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if ($name_used_in_source_link_to_show){
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$name_used_in_source_link_to_show = ' (name in source: '. $name_used_in_source_link_to_show . ')';
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}
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$out = '<span class="'. html_class_atttibute_ref($element) . '"> '. $description . $sourceRefs . $name_used_in_source_link_to_show . $annotation_fkeys. '</span>';
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}
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}
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}
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//if no sources, print the description
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if(!isset($out)) {
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$out = '<span class="'. html_class_atttibute_ref($element) . '"> ' . $description . $annotation_fkeys. '</span>';
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}
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/*
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if ($feature_uuid == UUID_NAME_USAGE){
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foreach($element->sources as $source){
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$referenceCitation = cdm_ws_get(CDM_WS_NOMENCLATURAL_REFERENCE_CITATION,
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array($source->citation->uuid),
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"microReference=".urlencode($source->citationMicroReference));
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$referenceCitation = $referenceCitation->String;
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if($description && strlen($description) > 0 && $referenceCitation ){
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$sourceRefs .= ' ('.$referenceCitation.')' ;
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}else if ($referenceCitation){
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$sourceRefs = $referenceCitation;
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}
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}
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}else{
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foreach($element->sources as $source){
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$referenceCitation = theme('cdm_DescriptionElementSource',
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$source,
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($feature_uuid == UUID_NAME_USAGE) ? false : true);
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if($description && strlen($description) > 0 && $referenceCitation ){
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$sourceRefs .= ' ('.$referenceCitation.')' ;
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}else if ($referenceCitation){
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$sourceRefs = $referenceCitation;
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}
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}
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}
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if(strlen($sourceRefs) > 0){
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$sourceRefs = '<span class="sources">' . $sourceRefs . '</span>';
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}
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if ($source->nameUsedInSource->uuid && ($feature_uuid != UUID_NAME_USAGE)){
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//do a link to name page
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$name_used_in_source_link_to_show = l($source->nameUsedInSource->titleCache,
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path_to_name($source->nameUsedInSource->uuid),
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array(), NULL, NULL, FALSE ,TRUE);
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}else if ($source->nameUsedInSource->uuid && ($feature_uuid == UUID_NAME_USAGE)){
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//do not do link for NAME USAGE feature
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$name_used_in_source_link_to_show = $source->nameUsedInSource->titleCache;
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}else if (strlen($source->nameUsedInSource->originalNameString) > 0){
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//show a text without link
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$name_used_in_source_link_to_show = $source->nameUsedInSource->originalNameString;
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}
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if($asListElement && ($feature_uuid == UUID_NAME_USAGE)){
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$out = '<li class="descriptionText">' . $name_used_in_source_link_to_show;
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//adding ":" if necesary
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if ($name_used_in_source_link_to_show && ($description || $sourceRefs)){
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$out .= ': ';
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}
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$out .= $description . $sourceRefs . theme('cdm_annotations_as_footnotekeys', $element) . '</li>';
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}else if ($asListElement){
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$out = '<li class="descriptionText">' . $name_used_in_source_link_to_show;
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//adding ":" if necesary
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if ($name_used_in_source_link_to_show && ($description || $sourceRefs)){
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$out .= ': ';
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}
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$out .= $description . $sourceRefs . theme('cdm_annotations_as_footnotekeys', $element) . '</li>';
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//special handling for flora malesiana TODO: possible better way to implement this case?
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}else{
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if ($name_used_in_source_link_to_show){
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$name_used_in_source_link_to_show = ' (name in source: '. $name_used_in_source_link_to_show . ')';
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}
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$out = $description . $sourceRefs . $name_used_in_source_link_to_show;
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$out .= theme('cdm_annotations_as_footnotekeys', $element);
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}
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*/
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// add annotations as footnote key
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//$out .= theme('cdm_annotations_as_footnotekeys', $element); move above
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return $out;
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}
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/**
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* @overrides theme_cdm_taggedtext2html in order to replace t.infr and t.infgen. with '[unranked]'
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*/
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function garland_cichorieae_cdm_taggedtext2html(array &$taggedtxt, $tag = 'span', $glue = ' ', $skiptags = array()){
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$out = '';
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$i = 0;
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foreach($taggedtxt as $tt){
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if(!in_array($tt->type, $skiptags) && strlen($tt->text) > 0){
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$out .= (strlen($out) > 0 && ++$i < count($taggedtxt)? $glue : '').'<'.$tag.' class="'.$tt->type.'">';
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if($tt->type == "rank" && ($tt->text == "t.infr." || $tt->text == "t.infgen.")){
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$out .= t('[unranked]');
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}else{
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$out .= t($tt->text);
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}
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$out .= '</'.$tag.'>';
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}
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}
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return $out;
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}
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function garland_cichorieae_cdm_descriptionElementArray($elementArray, $feature, $glue = '', $sortArray = false, $enclosingHtml = 'ul'){
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$enclosingHtml = 'div';
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$out = '<'.$enclosingHtml.' class="description" id="'.$feature->representation_L10n.'">';
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if($sortArray) sort($elementArray);
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$out .= join($elementArray, $glue);
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$out .= '</'.$enclosingHtml.'>';
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return $out;
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}
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/**
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* all reference links switched of
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*/
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function garland_cichorieae_cdm_nomenclaturalReferenceSTO($referenceSTO, $doLink = FALSE, $cssClass = '', $separator = '<br />' , $enclosingTag = 'li'){
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$doLink = FALSE;
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if(isset($referenceSTO->microReference)){
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// it is a ReferenceTO
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$nomref_citation = theme('cdm_fullreference', $referenceSTO);
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} else {
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// it is ReferenceSTO
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$nomref_citation = $referenceSTO->fullCitation;
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}
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$is_IN_reference = str_beginsWith($nomref_citation, 'in');
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284
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if($doLink){
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$nomref_citation = l($nomref_citation, "/cdm_dataportal/reference/".$referenceSTO->uuid, array(), NULL, NULL, FALSE, TRUE);
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}
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if(!empty($nomref_citation)){
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$nomref_citation = ($is_IN_reference ? ' ':', ') . $nomref_citation;
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}
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return $nomref_citation;
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}
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297
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/***** GARLAND OVERRIDES ******/
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/**
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* Sets the body-tag class attribute.
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*
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* Adds 'sidebar-left', 'sidebar-right' or 'sidebars' classes as needed.
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*/
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function phptemplate_body_class($sidebar_left, $sidebar_right) {
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if ($sidebar_left != '' && $sidebar_right != '') {
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$class = 'sidebars';
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}
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else {
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if ($sidebar_left != '') {
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$class = 'sidebar-left';
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}
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if ($sidebar_right != '') {
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$class = 'sidebar-right';
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}
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}
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if (isset($class)) {
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print ' class="'. $class .'"';
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}
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}
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321
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/**
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* Return a themed breadcrumb trail.
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*
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* @param $breadcrumb
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* An array containing the breadcrumb links.
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* @return a string containing the breadcrumb output.
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*/
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function phptemplate_breadcrumb($breadcrumb) {
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if (!empty($breadcrumb)) {
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return '<div class="breadcrumb">'. implode(' › ', $breadcrumb) .'</div>';
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}
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}
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/**
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336
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* Allow themable wrapping of all comments.
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*/
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function phptemplate_comment_wrapper($content, $type = null) {
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static $node_type;
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340
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if (isset($type)) $node_type = $type;
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342
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if (!$content || $node_type == 'forum') {
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return '<div id="comments">'. $content . '</div>';
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|
344
|
}
|
|
345
|
else {
|
|
346
|
return '<div id="comments"><h2 class="comments">'. t('Comments') .'</h2>'. $content .'</div>';
|
|
347
|
}
|
|
348
|
}
|
|
349
|
|
|
350
|
/**
|
|
351
|
* Override or insert PHPTemplate variables into the templates.
|
|
352
|
*/
|
|
353
|
function _phptemplate_variables($hook, $vars) {
|
|
354
|
if ($hook == 'page') {
|
|
355
|
|
|
356
|
if ($secondary = menu_secondary_local_tasks()) {
|
|
357
|
$output = '<span class="clear"></span>';
|
|
358
|
$output .= "<ul class=\"tabs secondary\">\n". $secondary ."</ul>\n";
|
|
359
|
$vars['tabs2'] = $output;
|
|
360
|
}
|
|
361
|
|
|
362
|
// Hook into color.module
|
|
363
|
if (module_exists('color')) {
|
|
364
|
_color_page_alter($vars);
|
|
365
|
}
|
|
366
|
return $vars;
|
|
367
|
}
|
|
368
|
return array();
|
|
369
|
}
|
|
370
|
|
|
371
|
/**
|
|
372
|
* Returns the rendered local tasks. The default implementation renders
|
|
373
|
* them as tabs.
|
|
374
|
*
|
|
375
|
* @ingroup themeable
|
|
376
|
*/
|
|
377
|
function phptemplate_menu_local_tasks() {
|
|
378
|
$output = '';
|
|
379
|
|
|
380
|
if ($primary = menu_primary_local_tasks()) {
|
|
381
|
$output .= "<ul class=\"tabs primary\">\n". $primary ."</ul>\n";
|
|
382
|
}
|
|
383
|
|
|
384
|
return $output;
|
|
385
|
}
|
|
386
|
|
|
387
|
function garland_cichorieae_get_partDefinition($nameType){
|
|
388
|
if($nameType == 'BotanicalName'){
|
|
389
|
return array(
|
|
390
|
'namePart' => array(
|
|
391
|
'name' => true
|
|
392
|
),
|
|
393
|
'nameAuthorPart' => array(
|
|
394
|
'name' => true,
|
|
395
|
'authors' => true
|
|
396
|
),
|
|
397
|
'referencePart' => array(
|
|
398
|
'reference' => true,
|
|
399
|
'microreference' => true,
|
|
400
|
),
|
|
401
|
'statusPart' => array(
|
|
402
|
'status' => true,
|
|
403
|
),
|
|
404
|
'descriptionPart' => array(
|
|
405
|
'description' => true,
|
|
406
|
),
|
|
407
|
);
|
|
408
|
}
|
|
409
|
return false;
|
|
410
|
}
|
|
411
|
|
|
412
|
function garland_cichorieae_get_nameRenderTemplate($renderPath){
|
|
413
|
|
|
414
|
switch($renderPath) {
|
|
415
|
case 'taxon_page_title':
|
|
416
|
case 'polytomousKey':
|
|
417
|
$template = array(
|
|
418
|
'namePart' => array('#uri'=>true)
|
|
419
|
);
|
|
420
|
break;
|
|
421
|
case 'taxon_page_synonymy':
|
|
422
|
case 'related_taxon':
|
|
423
|
$template = array(
|
|
424
|
'nameAuthorPart' => array('#uri'=>true),
|
|
425
|
'referencePart' => true,
|
|
426
|
'statusPart' => true,
|
|
427
|
'descriptionPart' => true
|
|
428
|
);
|
|
429
|
break;
|
|
430
|
case 'acceptedFor':
|
|
431
|
$template = array(
|
|
432
|
'nameAuthorPart' => array('#uri'=>true),
|
|
433
|
'referencePart' => true
|
|
434
|
);
|
|
435
|
break;
|
|
436
|
case 'typedesignations':
|
|
437
|
case 'list_of_taxa':
|
|
438
|
case '#DEFAULT':
|
|
439
|
$template = array(
|
|
440
|
'nameAuthorPart' => array('#uri'=>true),
|
|
441
|
'referencePart' => true
|
|
442
|
);
|
|
443
|
}
|
|
444
|
return $template;
|
|
445
|
}
|
|
446
|
|
|
447
|
/**
|
|
448
|
* theme specific mods:
|
|
449
|
* $captionElements = array('title', '#uri'=>t('open Image'));
|
|
450
|
* $mediaLinkType:
|
|
451
|
* "NORMAL": link to the image page or to the $alternativeMediaUri if it is defined
|
|
452
|
* instead of
|
|
453
|
* "LIGHTBOX": open the link in a light box,
|
|
454
|
* TODO expose those in admin section, by adding 'em to gallery_settings see http://dev.e-taxonomy.eu/trac/ticket/2494
|
|
455
|
*/
|
|
456
|
function garland_cichorieae_cdm_taxon_list_thumbnails($taxon){
|
|
457
|
|
|
458
|
|
|
459
|
$gallery_settings = getGallerySettings(CDM_DATAPORTAL_SEARCH_GALLERY_NAME);
|
|
460
|
|
|
461
|
$mediaLinkType = 'NORMAL';
|
|
462
|
$showCaption = $gallery_settings['cdm_dataportal_show_thumbnail_captions'];
|
|
463
|
if($showCaption){
|
|
464
|
$captionElements = array('title', '#uri'=>t('open Image'));
|
|
465
|
}
|
|
466
|
|
|
467
|
$gallery_name = $taxon->uuid;
|
|
468
|
|
|
469
|
$mediaQueryParameters = array("type"=>"ImageFile");
|
|
470
|
$galleryLinkUri = path_to_taxon($taxon->uuid).'/images';
|
|
471
|
|
|
472
|
// cdm_dataportal_show_media = ???? TODO
|
|
473
|
$selectShowMedia = variable_get('cdm_dataportal_show_media', 0);
|
|
474
|
if ($selectShowMedia == 0){
|
|
475
|
$mediaList = cdm_ws_get(CDM_WS_PORTAL_TAXON_MEDIA, array($taxon->uuid), queryString( $mediaQueryParameters ));
|
|
476
|
}else{
|
|
477
|
$mediaList = cdm_ws_get(CDM_WS_PORTAL_TAXON_SUBTREE_MEDIA, array($taxon->uuid), queryString( $mediaQueryParameters ));
|
|
478
|
}
|
|
479
|
|
|
480
|
$out .= theme('cdm_media_gallerie', $mediaList, $gallery_name,
|
|
481
|
$gallery_settings['cdm_dataportal_media_maxextend'],
|
|
482
|
$gallery_settings['cdm_dataportal_media_cols'],
|
|
483
|
$gallery_settings['cdm_dataportal_media_maxRows'],
|
|
484
|
$captionElements, $mediaLinkType, $galleryLinkUri, null);
|
|
485
|
|
|
486
|
return $out;
|
|
487
|
}
|
|
488
|
|
|
489
|
function garland_cichorieae_cdm_feature_name($feature_name){
|
|
490
|
switch($feature_name){
|
|
491
|
case "Protologue": return t("Original Publication");
|
|
492
|
default: return t(ucfirst($feature_name));
|
|
493
|
}
|
|
494
|
}
|
|
495
|
|
|
496
|
/* ======================== Special functions for subtheme handling ================ */
|
|
497
|
|
|
498
|
function sub_theme() {
|
|
499
|
global $user, $custom_theme;
|
|
500
|
|
|
501
|
// Only select the user selected theme if it is available in the
|
|
502
|
// list of enabled themes.
|
|
503
|
$theme = $user->theme && $themes[$user->theme]->status ? $user->theme : variable_get('theme_default', 'garland');
|
|
504
|
|
|
505
|
// Allow modules to override the present theme... only select custom theme
|
|
506
|
// if it is available in the list of installed themes.
|
|
507
|
$theme = $custom_theme && $themes[$custom_theme] ? $custom_theme : $theme;
|
|
508
|
|
|
509
|
return $theme;
|
|
510
|
}
|
|
511
|
|
|
512
|
|
|
513
|
/**
|
|
514
|
* Return the path to the currently selected sub theme.
|
|
515
|
*/
|
|
516
|
function path_to_sub_theme() {
|
|
517
|
$themes = list_themes();
|
|
518
|
$theme = sub_theme();
|
|
519
|
return dirname($themes[$theme]->filename);
|
|
520
|
}
|