Revision 54e498e3
Added by Andreas Kohlbecker over 11 years ago
| modules/cdm_dataportal/cdm_api/cdm_api.module | ||
|---|---|---|
| 1103 | 1103 |
$secref_cache = array(); |
| 1104 | 1104 |
} |
| 1105 | 1105 |
|
| 1106 |
/** |
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| 1107 |
* Validates if the given string is a uuid. |
|
| 1108 |
* |
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| 1109 |
* @param unknown_type $str |
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| 1110 |
*/ |
|
| 1106 | 1111 |
function is_uuid($str){
|
| 1107 | 1112 |
return is_string($str) && strlen($str) == 36 && strpos($str, '-'); |
| 1108 | 1113 |
} |
| 1109 | 1114 |
|
| 1115 |
/** |
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| 1116 |
* Checks if the given $object is a valid cdm entity. An object is consirered |
|
| 1117 |
* cdm entity if it has a string field $object->class with at least 3 characters and |
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| 1118 |
* if it has a valid uuid in $object->uuid. |
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| 1119 |
* |
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| 1120 |
* @author a.kohlbecker |
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| 1121 |
* @param unknown_type $object |
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| 1122 |
*/ |
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| 1123 |
function is_cdm_entity($object){
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| 1124 |
return is_string($object->class) && strlen($object->class) > 2 && is_string($object->uuid) && is_uuid($object->uuid); |
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| 1125 |
} |
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| 1126 |
|
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| 1110 | 1127 |
function _cdm_api_secref_cache_add($secUuidsStr){
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| 1111 | 1128 |
global $secref_cache; |
| 1112 | 1129 |
$ref = cdm_ws_get(CDM_WS_REFERENCE, $secUuidsStr); |
| ... | ... | |
| 1121 | 1138 |
$secref_cache[$ref->uuid] = $ref; |
| 1122 | 1139 |
} |
| 1123 | 1140 |
|
| 1141 |
/** |
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* Checks if the given $uri starts with the cdm webservice url stored in the |
|
| 1143 |
* Drupal variable 'cdm_webservice_url'. The 'cdm_webservice_url' can be set in the |
|
| 1144 |
* admins section of the portal. |
|
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* |
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* @param $uri the URI to test |
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*/ |
|
| 1124 | 1148 |
function _is_cdm_ws_uri($uri){
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| 1125 | 1149 |
return str_beginsWith($uri, variable_get('cdm_webservice_url', '#EMPTY#'));
|
| 1126 | 1150 |
} |
| modules/cdm_dataportal/cdm_dataportal.module | ||
|---|---|---|
| 1228 | 1228 |
return $result->Integer; |
| 1229 | 1229 |
} |
| 1230 | 1230 |
|
| 1231 |
/** |
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| 1232 |
* Composes an HTML element class attribute value composed of |
|
| 1233 |
* the shortname of the cdm class and the uuid of the entity. |
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* This class attribute should be used whereever an cdm-entity is rendered. |
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* |
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* These according class selectors in css must be escaped, eg: |
|
| 1237 |
* .cdm\:TextData |
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| 1238 |
* |
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| 1239 |
* @param $cdmEntity |
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| 1240 |
*/ |
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| 1241 |
function html_class_atttibute_ref($cdmEntity){
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| 1242 |
|
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| 1243 |
if(is_cdm_entity($cdmEntity)) {
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| 1244 |
return "cdm:".$cdmEntity->class." uuid:".$cdmEntity->uuid; |
|
| 1245 |
} |
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| 1246 |
} |
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| 1247 |
|
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| 1231 | 1248 |
function theme_cdm_uri_to_synonym($synonymUuid, $acceptedUuid, $pagePart = null){
|
| 1232 | 1249 |
$acceptedPath = path_to_taxon($acceptedUuid, true); |
| 1233 | 1250 |
return url($acceptedPath.($pagePart ? '/'.$pagePart : ''), 'highlite='.$synonymUuid.'&acceptedFor='.$synonymUuid, $synonymUuid); |
| modules/cdm_dataportal/theme/cdm_dataportal.descriptions.theme | ||
|---|---|---|
| 105 | 105 |
if($node->feature->uuid != UUID_IMAGE) {
|
| 106 | 106 |
|
| 107 | 107 |
$block->delta = generalizeString($featureRepresentation); |
| 108 |
$block->subject = '<span class="feature.uuid:'.$node->feature->uuid.'">' . theme('cdm_feature_name', $featureRepresentation) . '</span>';
|
|
| 108 |
$block->subject = '<span class="'. html_class_atttibute_ref($node->feature) . '">' . theme('cdm_feature_name', $featureRepresentation) . '</span>';
|
|
| 109 | 109 |
$block->module = "cdm_dataportal-feature"; |
| 110 | 110 |
$block->content = ''; |
| 111 | 111 |
|
| themes/garland_cichorieae/styleOverride.css | ||
|---|---|---|
| 396 | 396 |
margin-left: 45px; |
| 397 | 397 |
background-image: none; |
| 398 | 398 |
} |
| 399 |
|
|
| 400 |
|
|
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#block-cdm_dataportal-feature-credits span.cdm\:TextData {
|
|
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display: block; |
|
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} |
|
| themes/garland_cichorieae/template.php | ||
|---|---|---|
| 87 | 87 |
$asListElement = false; |
| 88 | 88 |
} |
| 89 | 89 |
|
| 90 |
//printing annotations footnotes |
|
| 91 |
$annotation_fkeys = theme('cdm_annotations_as_footnotekeys', $element, $feature_uuid);
|
|
| 92 |
|
|
| 90 | 93 |
if ($feature_uuid == UUID_NAME_USAGE || $feature_uuid == UUID_CHROMOSOMES){
|
| 91 | 94 |
$no_links = true; |
| 92 | 95 |
} |
| ... | ... | |
| 132 | 135 |
if ($name_used_in_source_link_to_show && ($description || $sourceRefs)){
|
| 133 | 136 |
$out .= ': '; |
| 134 | 137 |
} |
| 135 |
$out .= $description . $sourceRefs .theme('cdm_annotations_as_footnotekeys', $element, $feature_uuid) . '</li>';
|
|
| 138 |
$out .= $description . $sourceRefs .theme('cdm_annotations_as_footnotekeys', $element, $feature_uuid) . $annotation_fkeys . '</li>';
|
|
| 136 | 139 |
}else if ($asListElement){
|
| 137 | 140 |
$out = '<li class="descriptionText">' . $name_used_in_source_link_to_show; |
| 138 | 141 |
//adding ":" if necesary |
| 139 | 142 |
if ($name_used_in_source_link_to_show && ($description || $sourceRefs)){
|
| 140 | 143 |
$out .= ': '; |
| 141 | 144 |
} |
| 142 |
$out .= $description . $sourceRefs . theme('cdm_annotations_as_footnotekeys', $element, $feature_uuid) . '</li>';
|
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| 145 |
$out .= $description . $sourceRefs . theme('cdm_annotations_as_footnotekeys', $element, $feature_uuid) . $annotation_fkeys . '</li>';
|
|
| 143 | 146 |
//special handling for flora malesiana TODO: possible better way to implement this case? |
| 144 | 147 |
}else{
|
| 145 | 148 |
if ($name_used_in_source_link_to_show){
|
| 146 | 149 |
$name_used_in_source_link_to_show = ' (name in source: '. $name_used_in_source_link_to_show . ')'; |
| 147 | 150 |
} |
| 148 |
$out = $description . $sourceRefs . $name_used_in_source_link_to_show;
|
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| 151 |
$out = '<span class="'. html_class_atttibute_ref($element) . '"> '. $description . $sourceRefs . $name_used_in_source_link_to_show . $annotation_fkeys. '</span>';
|
|
| 149 | 152 |
} |
| 150 | 153 |
} |
| 151 | 154 |
} |
| 152 | 155 |
|
| 153 | 156 |
//if no sources, print the description |
| 154 | 157 |
if(!isset($out)) {
|
| 155 |
$out = $description;
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| 158 |
$out = '<span class="'. html_class_atttibute_ref($element) . '"> ' . $description . $annotation_fkeys. '</span>';
|
|
| 156 | 159 |
} |
| 157 |
//printing annotations footnotes |
|
| 158 |
$out .= theme('cdm_annotations_as_footnotekeys', $element, $feature_uuid);
|
|
| 160 |
|
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| 159 | 161 |
/* |
| 160 | 162 |
if ($feature_uuid == UUID_NAME_USAGE){
|
| 161 | 163 |
foreach($element->sources as $source){
|
Also available in: Unified diff
fixing #2568 (CICHORIEAE: Multiple Citation enties should be shown in separate lines)