EDIT

#!/bin/bash

# -- options

while [[ "$#" -gt 0 ]]; do

    case $1 in

        -h|--help) print_help=1;;

        --mailto) MAILTO="$2"; shift ;;

        --deactivate-install) deactivate_install=1 ;;

        --multi-site) multisite=1 ;;

        --site-url) site_url=$2; shift ;;

        *) echo "Unknown parameter passed: $1"; exit 1 ;;

    esac

    shift

done

if [[ -n "$site_url" ]]; then

    unset multisite

fi 

if [[ -z "${site_url}${multisite}" ]]; then

    print_help="1"

fi

# -- help

if [[ "$print_help" == "1" ]]; then

cat << "EOF"

Upadates all composer dependencies including the drupal core code as well as modules.

Prior starting the upgrade process a backup of the drupal-cdm-dataportal installation 

is created in $HOME/drupal-cdm-dataportal-backups/.

Some files in ./web/ which may be modified for specific setups are preserved during the 

update process:

 * web/.haccess*

 * web/robots*.txt

 * all symbolic links except for web/polyfills as this is managed through composer.  

USAGE: update-dependencies.sh [--deactivate-install] [--multi-site] [--mailto <ADDRESS>]

  --deactivate-install :  The install.php will be hidden by appending '.off' to the filename

  -h, --help:  Print this help text    

  --mailto <ADDRESS>:  send a email to the ADDRESS with a log of the update process

  --multi-site:  Do a multi-site update. Requires dataportals-drush. See https://dev.e-taxonomy.eu/svn/trunk/server-scripts/dataportal-admin/

  --site-url:  The site url to be used with drush. This option disables the --multi-site option

EOF

	exit 0

fi

# -- tests

if [[ -z "$(grep 'cybertaxonomy.org/drupal-7-dataportal' composer.json)"  ]]; then

    echo "ERROR: This script must be executed in the root of the drupal-7-cdm-dataportal folder"

    exit -1

fi

# -- requirements

COMPOSER=$(which composer)

if [[ -z "$COMPOSER" ]]; then

    # try local composer

    if [[ -x ./composer ]]; then

        COMPOSER=./composer

    else

        echo "composer not found. Please see https://github.com/cybertaxonomy/cdm-dataportal#preparation"

        exit -1

    fi

fi

# -- backups before any modification

TMP=$(mktemp -d)

echo "creating full backup ..."

backups_folder=$HOME/drupal-cdm-dataportal-backups

mkdir -p $backups_folder

archive_file=$backups_folder/drupal-cdm-dataportal-backup-$(date +%F_%T).tar.gz

tar -czf $archive_file ./

echo "backup archive created at "$(readlink -f $archive_file)

echo "back up of settings and config files to ${TMP} ..."

# backup modified files

cp -a web/.htaccess* ${TMP}/

# .htaccess.dist is provided by the drupal/drupal package und must not be in the backup

rm -f ${TMP}/.htaccess.dist

cp -a web/robots*.txt ${TMP}/

# preserve all symlinks

find web/ -maxdepth 1 -type l -exec cp -a {} ${TMP}/ \;

# -- setup 

if [[ "$multisite" == "1" ]]; then

    DRUSH=$(which dataportals-drush) 

else 

    DRUSH=./vendor/drush/drush/drush

    if [[ ! -e $DRUSH ]]; then 

        echo "Need to install dependencies first ..."

        $COMPOSER install --no-dev --ansi

    fi

fi 

DRUSH=$DRUSH" -r $(pwd)/web/" 

if [[ -n "$site_url" ]]; then

    DRUSH=$DRUSH" -l $site_url"

fi

echo "setting dataportals in update mode ..."

# set all portals into maintenance mode

$DRUSH vset -y maintenance_mode 1

# turn clean urls off since .htaccess will be overwritten during the update

$DRUSH vset clean_url -y 0

# turn off cdm_debug_mode in all sites

$DRUSH vset -y cdm_debug_mode 0

yes y | $DRUSH updatedb

# run all database updates

echo "-------------------------------------------------------------------"

echo "Updating dependencies ..."

$COMPOSER update --no-dev --ansi | tee ${TMP}/composer.log

echo "-------------------------------------------------------------------"

echo "restoring settings and config files from temp backup ..."

# restore original settings and files and disable maintenance mode

rm -f .htaccess.dist

cp web/.htaccess web/.htaccess.dist

cp -a ${TMP}/.htaccess* web/

cp -a ${TMP}/robots*.txt web/

find ${TMP} -maxdepth 1 -type l -exec cp -a {} web/ \;

if (( deactivate_install == 1 )); then

    # hide the install.php 

    rm -f web/install.php.off

    mv web/install.php web/install.php.off 

fi 

echo "-------------------------------------------------------------------"

echo "Applying pending database updates ..."

yes y | $DRUSH updatedb

echo "-------------------------------------------------------------------"

echo "dataportal back to production mode ..."

$DRUSH vset clean_url -y 1

$DRUSH vset -y maintenance_mode 0

echo "-------------------------------------------------------------------"

if [[ -n "$MAILTO" ]]; then

    echo "sending email to $MAILTO ..."

    cat ${TMP}/composer.log | mail -s "(`hostname`): cdm-dataportal dependencies update" $MAILTO

    echo "-------------------------------------------------------------------"

fi

echo "DONE"