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<?php
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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See http://www.mozilla.org/MPL/MPL-1.1.html for the full license terms.
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*/
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function theme_cdm_search_results($pager, $path, $parameters){
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$showThumbnails = $_SESSION['pageoptions']['searchtaxa']['showThumbnails'];
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if( !is_numeric($showThumbnails)){
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$showThumbnails = 1;
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}
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$setSessionUri = url('cdm_api/setvalue/session', "var=[pageoption][searchtaxa][showThumbnails]&val=");
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drupal_add_js('$(document).ready(function() {
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// init
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if('.$showThumbnails.' == 1){
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$(\'.media_gallery\').show(20);
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} else {
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$(\'.media_gallery\').hide(20);
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}
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// add change hander
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$(\'#showThumbnails\').change(
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function(event){
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var state = 0;
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if($(this).is(\':checked\')){
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$(\'.media_gallery\').show(20);
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state = 1;
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} else {
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$(\'.media_gallery\').hide(20);
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}
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// store state in session variable
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var uri = \''.$setSessionUri.'\' + state;
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jQuery.get(uri);
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});
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});', "inline");
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drupal_set_title(t('Search results'));
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$out = ''; //l('Advanced Search', '/cdm_dataportal/search');
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$out = '<div class="page_options"><form name="pageoptions"><input id="showThumbnails" type="checkbox" name="showThumbnails" '.($showThumbnails == 1? 'checked="checked"': '').'> '.t('Show Thumbnails').'</form></div>';
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if(count($pager->records) > 0){
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$out .= '<div id="search_results">';
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$out .= theme('cdm_list_of_taxa', $pager->records);
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$out .= '</div>';
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$out .= theme('cdm_pager', $pager, $path, $parameters);
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} else {
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$out = '<h4 class="error">Sorry, no matching entries found.</h4>';
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}
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return $out;
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}
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/**
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* renders misapplied names and invalid designations.
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* Both relation types are currently treated the same!
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*
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* @param unknown_type $taxonRelationships
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* @return unknown
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*/
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function theme_cdm_taxonRelationships($taxonRelationships){
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if(!$taxonRelationships){
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return;
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}
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RenderHints::pushToRenderStack('taxonRelationships');
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$footnoteListKey = 'taxonRelationships';
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RenderHints::setFootnoteListKey($footnoteListKey);
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$misapplied = array();
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$joinedAuthorTeams = array();
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$taxon_relationship_types = variable_get(CDM_TAXON_RELATIONSHIP_TYPES, unserialize(CDM_TAXON_RELATIONSHIP_TYPES_DEFAULT));
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// aggregate misapplied names having the same fullname:
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foreach($taxonRelationships as $taxonRelation){
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if( in_array($taxonRelation->type->uuid, $taxon_relationship_types)) {
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if( $taxonRelation->type->uuid == UUID_MISAPPLIED_NAME_FOR || $taxonRelation->type->uuid == UUID_INVALID_DESIGNATION_FOR ){
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$name = $taxonRelation->fromTaxon->name->titleCache;
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$author_team = cdm_ws_get(CDM_WS_REFERENCE_AUTHORTEAM, $taxonRelation->fromTaxon->sec->uuid);
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$authorteam = $author_team->titleCache;
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if(!isset($misapplied[$name])){
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$misapplied[$name]['out'] =
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'<span class="misapplied">'
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.theme('cdm_related_taxon',$taxonRelation->fromTaxon, UUID_MISAPPLIED_NAME_FOR).
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'</span>';
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}
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// collect all authors for this fullname
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if(isset($authorteam)){
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$misapplied[$name]['authorteam'][$authorteam] = '';
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$joinedAuthorTeams[$authorteam] = 'sensu '.theme('cdm_reference', $taxonRelation->fromTaxon->sec);
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}
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} else {
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// all relationsship types but misapplied_name_for invalid_designation_for
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$taxonRelationshipsLines[] = theme('cdm_related_taxon',$taxonRelation->fromTaxon, $taxonRelation->type->uuid, $taxonRelation->type, true);
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}
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}
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}
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// sort the joinedAuthorTeams and create footnotes and footnotekeys
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ksort($joinedAuthorTeams);
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foreach($joinedAuthorTeams as $authorteam=>$sensuCitation){
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$footnoteKey = FootnoteManager::addNewFootnote($footnoteListKey, $sensuCitation);
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$joinedAuthorTeams[$authorteam] = '<span class="sensu">sensu '.$authorteam. theme('cdm_footnote_key', $footnoteKey).'</span>';
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}
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// generate output
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if(is_array($misapplied) && count($misapplied) >0 ){
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$out .= '<ul class="misapplied">';
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foreach($misapplied as $misapplied_name){
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$out .= '<li class="synonym">'.$misapplied_name['out'] . " ";
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if(isset($misapplied_name['authorteam'])){
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// fill authors with the renderedFootnoteKey and sorting 'em
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foreach($misapplied_name['authorteam'] as $authorteam=>&$renderedFootnoteKey) {
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$renderedFootnoteKey = $joinedAuthorTeams[$authorteam];
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}
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ksort($misapplied_name['authorteam']);
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$out .= join('; ', $misapplied_name['authorteam']);
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}
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$out .= '</li>';
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}
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$out .= '</ul>';
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}
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if(is_array($taxonRelationshipsLines) && count($taxonRelationshipsLines) >0 ){
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$out .= '<ul class="taxonRelationships">';
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foreach($taxonRelationshipsLines as $taxonRelationshipLine){
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$out .= '<li class="synonym">'. $taxonRelationshipLine . '</li>';
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}
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$out .= '</ul>';
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}
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$tr_footnotes = theme('cdm_footnotes', $footnoteListKey, 'li');
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$tr_footnotes_exploded = explode('sensu', $tr_footnotes);
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$tr_footnotes_aux = '';
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foreach ($tr_footnotes_exploded as $element){
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$tr_footnotes_aux .= $element;
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}
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$out .= '<ul>' . $tr_footnotes_aux . '</ul>';
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//$out .= '</ul>';
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RenderHints::popFromRenderStack();
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return $out;
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}
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function theme_cdm_acceptedFor(){
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RenderHints::pushToRenderStack('acceptedFor');
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$out = '';
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if(isset($_REQUEST['acceptedFor'])){
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$synonym = cdm_ws_get(CDM_WS_PORTAL_TAXON, $_REQUEST['acceptedFor']);
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if($synonym){
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$out .= '<span class="acceptedFor">';
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$out .= t('is accepted for ');
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if(isset($synonym->name->nomenclaturalReference)){
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$referenceUri = url(path_to_reference($synonym->name->nomenclaturalReference->uuid));
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}
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$out .= theme('cdm_taxonName', $synonym->name, null, $referenceUri);
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$out .= theme('cdm_annotations_as_footnotekeys', $synonym);
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$out .= '</span>';
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}
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}
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RenderHints::popFromRenderStack();
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return $out;
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}
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function theme_cdm_list_of_taxa($records, $showMedia = false){
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RenderHints::pushToRenderStack('list_of_taxa');
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$form_name = 'search_gallery';
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//$default_values = unserialize(CDM_DATAPORTAL_GALLERY_SETTINGS);
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//$gallery_settings = variable_get($form_name, $default_values);
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$gallery_settings = getGallerySettings(CDM_DATAPORTAL_SEARCH_GALLERY_NAME);
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$showMedia_taxa = $gallery_settings['cdm_dataportal_show_taxon_thumbnails'];
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$showMedia_synonyms = $gallery_settings['cdm_dataportal_show_synonym_thumbnails'];
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//$showMedia_taxa = variable_get('cdm_dataportal_findtaxa_show_taxon_thumbnails', 1);
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//$showMedia_synonyms = variable_get('cdm_dataportal_findtaxa_show_synonym_thumbnails', 0);
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$classification_uuid = get_taxonomictree_uuid_selected();
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// .. well, for sure not as performant as before, but better than nothing.
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$synonym_uuids = array();
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foreach($records as $taxon){
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if($taxon->class != "Taxon"){
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if(!array_key_exists($taxon->uuid, $synonym_uuids)){
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$synonym_uuids[$taxon->uuid] = $taxon->uuid;
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}
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}
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}
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// batch service not jet implemented:
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// $table_of_accepted = cdm_ws_property(CDM_WS_PORTAL_TAXON_ACCEPTED, join(',', $synonym_uuids));
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// thus ...
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$table_of_accepted = array();
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foreach($synonym_uuids as $synUuid){
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$table_of_accepted[$synUuid] = cdm_ws_get(CDM_WS_PORTAL_TAXON_ACCEPTED, array($synUuid, $classification_uuid));
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}
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$out = '<ul class="cdm_names" style="background-image: none;">';
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foreach($records as $taxon){
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// its a Taxon
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if($taxon->class == "Taxon"){
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$taxonUri = url(path_to_taxon($taxon->uuid));
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if(isset($taxon->name->nomenclaturalReference)){
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$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid));
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}
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$out .= '<li class="Taxon">'.theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri);
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$out .= theme('cdm_annotations_as_footnotekeys', $taxon);
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if($showMedia_taxa){
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$out .= theme('cdm_taxon_list_thumbnails', $taxon);
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}
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$out .= '</li>';
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} else {
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// its a synonym
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$uuid = $taxon->uuid;
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$acceptedTaxa = $table_of_accepted[$uuid];
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if(count($acceptedTaxa) == 1){
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$acceptedTaxon = $acceptedTaxa[0];
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$taxonUri = theme('cdm_uri_to_synonym', $taxon->uuid, $acceptedTaxon->uuid, 'synonymy');
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if(isset($acceptedTaxon->name->nomenclaturalReference)){
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$referenceUri = url(path_to_reference($acceptedTaxon->name->nomenclaturalReference->uuid));
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}
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$out .= '<li class="Synonym">'.theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri);
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$out .= theme('cdm_annotations_as_footnotekeys', $taxon);
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if($showMedia_synonyms){
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$out .= theme('cdm_taxon_list_thumbnails', $acceptedTaxon);
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}
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$out .= '</li>';
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} else {
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//TODO avoid using Ajax in the cdm_dynabox .... why?
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//TODO add media
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$out .= cdm_dynabox(
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theme('cdm_taxonName', $taxon->name, null, null, false),
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cdm_compose_url(CDM_WS_PORTAL_TAXON_ACCEPTED, array($taxon->uuid, $classification_uuid)),
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'cdm_list_of_taxa',
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'Click for accepted taxon');
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}
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}
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}
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$out .= '</ul>';
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RenderHints::popFromRenderStack();
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return $out;
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}
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function theme_cdm_related_taxon($taxon, $reltype_uuid = false, $taxonRelationType = null, $doLinkTaxon = false){
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static $relsign_homo = '≡';
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static $relsign_hetero = '=';
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static $relsign_invalid = '–';
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$name_prefix = '';
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$name_postfix = '';
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$skiptags = array();
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if(isset($taxonRelationType->representation_L10n_abbreviatedLabel)){
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$relsign = $taxonRelationType->representation_L10n_abbreviatedLabel;
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}
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$reltype_representation = '';
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if(isset($taxonRelationType->representation_L10n)){
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$reltype_representation = $taxonRelationType->representation_L10n;
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}
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if(!$relsign) {
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$relsign = '';
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switch ($reltype_uuid){
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case UUID_HETEROTYPIC_SYNONYM_OF:
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case UUID_SYNONYM_OF:
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$relsign = $relsign_hetero;
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break;
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case UUID_HOMOTYPIC_SYNONYM_OF:
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$relsign = $relsign_homo;
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break;
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case UUID_MISAPPLIED_NAME_FOR:
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case UUID_INVALID_DESIGNATION_FOR:
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$skiptags[] = 'authors';
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$relsign = $relsign_invalid;
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$name_prefix = '"';
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$name_postfix = '"';
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break;
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default :
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$relsign = $relsign_invalid;
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}
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317
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}
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318
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/*
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319
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* names with status invalid or nudum are to be displayed with the $relsign_invalid,
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* these names appear at the end of all names in their homotypic group
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321
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* (ordered correctly by the java cdm_lib)
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*/
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323
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if ( is_array($taxon->name->status)) {
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foreach($taxon->name->status as $status){
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if ($status->type->uuid == UUID_NOMENCLATURALSTATUS_TYPE_INVALID || $status->type->uuid == UUID_NOMENCLATURALSTATUS_TYPE_NUDUM){
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$relsign = $relsign_invalid;
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}
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}
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}
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330
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331
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// now rendering starts ..
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332
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RenderHints::pushToRenderStack('related_taxon');
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334
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335
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if($taxon->name->nomenclaturalReference){
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$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid));
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}
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338
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if($doLinkTaxon){
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$taxonUri = url(path_to_taxon($taxon->uuid));
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}
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341
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//printing the taxonName and the handling the special case of annotations
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$nameHtml = theme('cdm_taxonName', $taxon->name, $taxonUri, $referenceUri, true, false, $skiptags);
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343
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$special_annotations_array = array();
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344
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$special_annotations_array[] = $taxon->name;
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345
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$special_annotations_array[] = $taxon;
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$nameHtml .= theme('cdm_annotations_as_footnotekeys', $special_annotations_array);
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|
347
|
|
|
348
|
//later homonym or trated as later homonym AND bloking names
|
|
349
|
$from_name_relations = cdm_ws_get(CDM_WS_PORTAL_TAXON_FROM_NAMERELATIONS, $taxon->uuid);
|
|
350
|
$to_name_relations = cdm_ws_get(CDM_WS_PORTAL_TAXON_TO_NAMERELATIONS, $taxon->uuid);
|
|
351
|
//first the FROM RELS
|
|
352
|
if ($from_name_relations){
|
|
353
|
foreach($from_name_relations as $element){
|
|
354
|
switch ($element->type->representation_L10n){
|
|
355
|
case 'later homonym for':
|
|
356
|
if(isset($name_relations_html)){
|
|
357
|
$name_relations_html .= ' nec ' . l($element->toName->titleCache . ' ' . substr($element->toName->nomenclaturalReference->datePublished->start, 0, 4),
|
|
358
|
'cdm_dataportal/name/' . $element->toName->uuid . '/' . $taxon->uuid . '/' . $element->toName->taxonBases[0]->uuid);
|
|
359
|
}else{
|
|
360
|
$name_relations_html = ' non ' . l($element->toName->titleCache . ' ' . substr($element->toName->nomenclaturalReference->datePublished->start, 0, 4),
|
|
361
|
'cdm_dataportal/name/' . $element->toName->uuid . '/' . $taxon->uuid . '/' . $element->toName->taxonBases[0]->uuid)
|
|
362
|
. ' ' . $element->toName->datePublished->start;
|
|
363
|
}
|
|
364
|
break;
|
|
365
|
case 'treated as later homonym for':
|
|
366
|
if(isset($name_relations_html)){
|
|
367
|
$name_relations_html = ' nec ' . l($element->toName->titleCache . ' ' . substr($element->toName->nomenclaturalReference->datePublished->start, 0, 4),
|
|
368
|
'cdm_dataportal/name/' . $element->toName->uuid);
|
|
369
|
}else{
|
|
370
|
$name_relations_html = ' non ' . l($element->toName->titleCache . ' ' . substr($element->toName->nomenclaturalReference->datePublished->start, 0, 4),
|
|
371
|
'cdm_dataportal/name/' . $element->toName->uuid);
|
|
372
|
}
|
|
373
|
break;
|
|
374
|
}
|
|
375
|
}
|
|
376
|
//second the TO RELS
|
|
377
|
if ($to_name_relations){
|
|
378
|
foreach($to_name_relations as $element){
|
|
379
|
switch ($element->type->representation_L10n){
|
|
380
|
case 'blocking name for':
|
|
381
|
if(isset($name_relations_html) ){
|
|
382
|
$name_relations_html .= ' nec ' . l($element->fromName->titleCache . ' ' . substr($element->fromName->nomenclaturalReference->datePublished->start, 0, 4),
|
|
383
|
'cdm_dataportal/name/' . $element->fromName->uuid . '/' . $taxon->uuid . '/' . $element->fromName->taxonBases[0]->uuid);
|
|
384
|
}else{
|
|
385
|
$name_relations_html = ' non ' . l($element->fromName->titleCache . ' ' . substr($element->fromName->nomenclaturalReference->datePublished->start, 0, 4),
|
|
386
|
'cdm_dataportal/name/' . $element->fromName->uuid . '/' . $taxon->uuid . '/' . $element->fromName->taxonBases[0]->uuid)
|
|
387
|
. ' ' . $element->fromName->datePublished->start;
|
|
388
|
}
|
|
389
|
break;
|
|
390
|
}
|
|
391
|
}
|
|
392
|
}
|
|
393
|
//rels output
|
|
394
|
if(isset($name_relations_html)){
|
|
395
|
$name_relations_html = '['. $name_relations_html .']';
|
|
396
|
}
|
|
397
|
}
|
|
398
|
//geneal output
|
|
399
|
$out = '<span class="relation_sign" title="' . $reltype_representation . '">'.$relsign.'</span>'.$name_prefix . $nameHtml . $name_postfix . $name_relations_html;
|
|
400
|
$out = uuid_anchor($taxon->uuid, $out);
|
|
401
|
|
|
402
|
RenderHints::popFromRenderStack();
|
|
403
|
|
|
404
|
return $out;
|
|
405
|
}
|
|
406
|
|
|
407
|
/**
|
|
408
|
*/
|
|
409
|
function theme_cdm_taxon_list_thumbnails($taxon){
|
|
410
|
|
|
411
|
|
|
412
|
$gallery_settings = getGallerySettings(CDM_DATAPORTAL_SEARCH_GALLERY_NAME);
|
|
413
|
$showCaption = $gallery_settings['cdm_dataportal_show_thumbnail_captions'];
|
|
414
|
|
|
415
|
if($showCaption){
|
|
416
|
$captionElements = array('title', 'rights');
|
|
417
|
}
|
|
418
|
|
|
419
|
$gallery_name = $taxon->uuid;
|
|
420
|
|
|
421
|
$mediaQueryParameters = array("type"=>"ImageFile");
|
|
422
|
$galleryLinkUri = path_to_taxon($taxon->uuid).'/images';
|
|
423
|
|
|
424
|
// cdm_dataportal_show_media = ???? TODO
|
|
425
|
$selectShowMedia = variable_get('cdm_dataportal_show_media', 0);
|
|
426
|
if ($selectShowMedia == 0){
|
|
427
|
$mediaList = cdm_ws_get(CDM_WS_PORTAL_TAXON_MEDIA, array($taxon->uuid), queryString( $mediaQueryParameters ));
|
|
428
|
}else{
|
|
429
|
$mediaList = cdm_ws_get(CDM_WS_PORTAL_TAXON_SUBTREE_MEDIA, array($taxon->uuid), queryString( $mediaQueryParameters ));
|
|
430
|
}
|
|
431
|
|
|
432
|
$out .= theme('cdm_media_gallerie', $mediaList, $gallery_name ,
|
|
433
|
$gallery_settings['cdm_dataportal_media_maxextend'],
|
|
434
|
$gallery_settings['cdm_dataportal_media_cols'],
|
|
435
|
$gallery_settings['cdm_dataportal_media_maxRows'],
|
|
436
|
$captionElements, 'LIGHTBOX', null, $galleryLinkUri);
|
|
437
|
|
|
438
|
return $out;
|
|
439
|
}
|
|
440
|
|
|
441
|
|