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6657531f
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Andreas Kohlbecker
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<?php
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/**
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* @file
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* Description theming functions.
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*
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* @copyright
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* (C) 2007-2012 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this module are subject to the Mozilla
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* Public License Version 1.1.
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* @see http://www.mozilla.org/MPL/MPL-1.1.html
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*/
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/**
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0c432a94
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Andreas Kohlbecker
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* Theme function to alter the feature representation.
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*
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* It is highly qeutionalbe if this function should be completely removed.
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* If a feature needs a different representation this should be edited directly
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* in the cdm data but it shoud not be tweeked like this in the portal.
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*
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* Used in:
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* - theme_cdm_feature_nodesTOC()
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* - theme_cdm_feature_nodes()
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* - theme_cdm_media_mime_application()
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* - theme_cdm_media_mime_text()
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*
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* TODO delete this function? (a.kohlbecker feb 2013)
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*
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6657531f
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Andreas Kohlbecker
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*/
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function theme_cdm_feature_name($variables) {
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$feature_name = $variables['feature_name'];
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0c432a94
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Andreas Kohlbecker
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return t($feature_name);
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6657531f
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Andreas Kohlbecker
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}
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/**
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28c5c87a
|
Andreas Kohlbecker
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* Returns a set of feature blocks for a taxon profile from the $mergedFeatureNodes of a given $taxon.
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6657531f
|
Andreas Kohlbecker
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*
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28c5c87a
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Andreas Kohlbecker
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* The taxon profile consists of drupal block elements, one for the description elements
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* of a specific feature. The structure is defined by specific FeatureTree.
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* The chosen FeatureTree is merged with the list of description elements prior to using this method.
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6657531f
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Andreas Kohlbecker
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*
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* The merged nodes can be obtained by making use of the
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* function cdm_ws_descriptions_by_featuretree().
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*
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37252893
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Andreas Kohlbecker
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* @see cdm_ws_descriptions_by_featuretree()
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*
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28c5c87a
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Andreas Kohlbecker
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* @param $mergedFeatureNodes
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| 51 |
6657531f
|
Andreas Kohlbecker
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*
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28c5c87a
|
Andreas Kohlbecker
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* @param $taxon
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*
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* @return array
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9aff46e4
|
Andreas Kohlbecker
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* A Drupal render array containing feature blocks and the table of content
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28c5c87a
|
Andreas Kohlbecker
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*
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* @ingroup compose
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6657531f
|
Andreas Kohlbecker
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*/
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28c5c87a
|
Andreas Kohlbecker
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function compose_cdm_feature_nodes($mergedFeatureNodes, $taxon) {
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6657531f
|
Andreas Kohlbecker
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9aff46e4
|
Andreas Kohlbecker
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$block_list = array();
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6657531f
|
Andreas Kohlbecker
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RenderHints::pushToRenderStack('feature_nodes');
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| 64 |
235fc94b
|
Andreas Kohlbecker
|
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6657531f
|
Andreas Kohlbecker
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$gallery_settings = getGallerySettings(CDM_DATAPORTAL_DESCRIPTION_GALLERY_NAME);
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28c5c87a
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Andreas Kohlbecker
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// Create a drupal block for each feature
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6657531f
|
Andreas Kohlbecker
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foreach ($mergedFeatureNodes as $node) {
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28c5c87a
|
Andreas Kohlbecker
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if ((isset($node->descriptionElements['#type']) ||
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has_feature_node_description_elements($node)) && $node->feature->uuid != UUID_IMAGE) { // skip empty or supressed features
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6657531f
|
Andreas Kohlbecker
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28c5c87a
|
Andreas Kohlbecker
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$feature_name = cdm_term_representation($node->feature, 'Unnamed Feature');
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6657531f
|
Andreas Kohlbecker
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f19f47fa
|
Andreas Kohlbecker
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$block = feature_block($feature_name, $node->feature);
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6f5c7f2a
|
Andreas Kohlbecker
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$block->content = array();
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159cd9bb
|
Andreas Kohlbecker
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$block_content_is_empty = TRUE;
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6f5c7f2a
|
Andreas Kohlbecker
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$block_content_weight = 0;
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6657531f
|
Andreas Kohlbecker
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f19f47fa
|
Andreas Kohlbecker
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/*
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* Content/DISTRIBUTION.
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*/
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6657531f
|
Andreas Kohlbecker
|
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28c5c87a
|
Andreas Kohlbecker
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if ($node->feature->uuid == UUID_DISTRIBUTION) {
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$block = compose_feature_block_distribution($taxon, $node->descriptionElements, $node->feature);
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159cd9bb
|
Andreas Kohlbecker
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$block_content_is_empty = FALSE;
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f19f47fa
|
Andreas Kohlbecker
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}
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/*
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* Content/COMMON_NAME.
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*/
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6f5c7f2a
|
Andreas Kohlbecker
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else if ($node->feature->uuid == UUID_COMMON_NAME) {
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28c5c87a
|
Andreas Kohlbecker
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$common_names_render_array = compose_cdm_common_names($node->descriptionElements, $node->feature);
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6f5c7f2a
|
Andreas Kohlbecker
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$block->content[] = $common_names_render_array;
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9aff46e4
|
Andreas Kohlbecker
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$block_content_is_empty = FALSE;
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}
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else if ($node->feature->uuid == UUID_USE_RECORD) {
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$block_uses_content_html = theme('cdm_block_Uses', array('taxonUuid' => $taxon->uuid));
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$block->content[] = markup_to_render_array($block_uses_content_html);
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$block_content_is_empty = FALSE;
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f19f47fa
|
Andreas Kohlbecker
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}
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/*
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* Content/ALL OTHER FEATURES.
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*/
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else {
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| 107 |
28c5c87a
|
Andreas Kohlbecker
|
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$media_list = array();
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$out_child_elements = '';
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f19f47fa
|
Andreas Kohlbecker
|
if (isset($node->descriptionElements)) {
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$taxon_uuid = NULL;
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if(isset($taxon) ) {
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$taxon_uuid = $taxon->uuid;
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6657531f
|
Andreas Kohlbecker
|
}
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| 116 |
159cd9bb
|
Andreas Kohlbecker
|
$elements_render_array = compose_cdm_descriptionElements($node->descriptionElements, $node->feature, $taxon_uuid);
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$block_content_is_empty = empty($elements_render_array);
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$block->content[] = $elements_render_array;
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f19f47fa
|
Andreas Kohlbecker
|
}
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| 120 |
0c432a94
|
Andreas Kohlbecker
|
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28c5c87a
|
Andreas Kohlbecker
|
// Content/ALL OTHER FEATURES/Subordinate Features
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// subordinate features are printed inline in one floating text,
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6f5c7f2a
|
Andreas Kohlbecker
|
// it is expected hat subordinate features can "contain" TextData,
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28c5c87a
|
Andreas Kohlbecker
|
// Qualitative- and Qualitative- DescriptioneElements
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if (isset($node->childNodes[0])) {
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| 126 |
f19f47fa
|
Andreas Kohlbecker
|
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// TODO support more than one level of children.
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6f5c7f2a
|
Andreas Kohlbecker
|
// can this be solved by recursively calling this function?
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f19f47fa
|
Andreas Kohlbecker
|
// @see http://dev.e-taxonomy.eu/trac/ticket/2393
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$text = '';
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foreach ($node->childNodes as $child) {
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if (isset($child->descriptionElements) && is_array($child->descriptionElements)) {
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foreach ($child->descriptionElements as $element) {
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| 135 |
8db340ef
|
Andreas Kohlbecker
|
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| 136 |
6f5c7f2a
|
Andreas Kohlbecker
|
//TODO it woud be better if we could use compose_cdm_descriptionElements() directly instead of the below stuff
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f19f47fa
|
Andreas Kohlbecker
|
if (is_array($element->media)) {
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// Append media of supordinate elements to list of main
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// feature.
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$media_list = array_merge($media_list, $element->media);
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| 142 |
6657531f
|
Andreas Kohlbecker
|
}
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| 143 |
f19f47fa
|
Andreas Kohlbecker
|
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switch ($element->class) {
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case 'TextData':
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| 146 |
6f5c7f2a
|
Andreas Kohlbecker
|
// FIXME use theme_cdm_descriptionElementTextData()
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| 147 |
f19f47fa
|
Andreas Kohlbecker
|
$out_child_elements = str_replace("\n", "<br/>", $element->multilanguageText_L10n->text);
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$out_child_elements = str_replace($child->feature->titleCache, '<em>' . $child->feature->representation_L10n . '</em>', $out_child_elements);
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break;
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case 'CategoricalData':
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$out_child_elements = '<em>' . $child->feature->representation_L10n . '</em> '
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. theme('cdm_descriptionElement_CategoricalData', array('element' => $element));
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break;
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case 'QuantitativeData':
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$out_child_elements = '<em>' . $child->feature->representation_L10n . '</em> '
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. theme('cdm_descriptionElement_QuantitativeData', array('element' => $element));
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}
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6657531f
|
Andreas Kohlbecker
|
}
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f19f47fa
|
Andreas Kohlbecker
|
$text .= " " . $out_child_elements;
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$out_child_elements = '';
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| 163 |
6657531f
|
Andreas Kohlbecker
|
}
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}
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| 165 |
159cd9bb
|
Andreas Kohlbecker
|
$block_content_is_empty = $block_content_is_empty && empty($text);
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| 166 |
6f5c7f2a
|
Andreas Kohlbecker
|
$block->content[] = markup_to_render_array($text);
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| 167 |
159cd9bb
|
Andreas Kohlbecker
|
$block_content_is_empty = $block_content_is_empty && empty($media_list);
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| 168 |
6f5c7f2a
|
Andreas Kohlbecker
|
$block->content[] = compose_feature_media_gallery($node, $media_list, $gallery_settings);
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| 169 |
28c5c87a
|
Andreas Kohlbecker
|
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| 171 |
6f5c7f2a
|
Andreas Kohlbecker
|
}
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/*
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* Footnotes for the feature block
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*/
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$block->content[] = markup_to_render_array(theme('cdm_footnotes', array('footnoteListKey' => $node->feature->uuid)));
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$block->content[] = markup_to_render_array(theme('cdm_annotation_footnotes', array('footnoteListKey' => $node->feature->uuid)));
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| 177 |
159cd9bb
|
Andreas Kohlbecker
|
} // END all other features
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| 178 |
f19f47fa
|
Andreas Kohlbecker
|
|
| 179 |
159cd9bb
|
Andreas Kohlbecker
|
if(!$block_content_is_empty){ // skip empty block content
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| 180 |
9aff46e4
|
Andreas Kohlbecker
|
$block_list[] = $block;
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| 181 |
dd1c109a
|
Andreas Kohlbecker
|
cdm_toc_list_add_item(cdm_term_representation($node->feature), $node->feature->uuid);
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| 182 |
159cd9bb
|
Andreas Kohlbecker
|
} // END: skip empty block content
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| 183 |
28c5c87a
|
Andreas Kohlbecker
|
} // END: skip empty or supressed features
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| 184 |
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} // END: creating a block per feature
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| 185 |
9aff46e4
|
Andreas Kohlbecker
|
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| 186 |
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drupal_alter('cdm_feature_node_blocks', $block_list, $taxon);
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| 188 |
6657531f
|
Andreas Kohlbecker
|
RenderHints::popFromRenderStack();
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| 189 |
28c5c87a
|
Andreas Kohlbecker
|
|
| 190 |
9aff46e4
|
Andreas Kohlbecker
|
return _block_get_renderable_array($block_list);
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| 191 |
6657531f
|
Andreas Kohlbecker
|
}
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| 193 |
28c5c87a
|
Andreas Kohlbecker
|
/**
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| 194 |
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* @param $node
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| 195 |
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* @param $media_list
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| 196 |
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* @param $gallery_settings
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* @return array
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*/
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function compose_feature_media_gallery($node, $media_list, $gallery_settings) {
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if (isset($node->descriptionElements)) {
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$media_list = array_merge($media_list, cdm_dataportal_media_from_descriptionElements($node->descriptionElements));
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| 202 |
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}
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| 203 |
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$captionElements = array('title', 'rights');
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$gallery = '';
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| 205 |
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if (isset($gallery_settings['cdm_dataportal_media_maxextend']) && isset($gallery_settings['cdm_dataportal_media_cols'])) {
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| 206 |
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$gallery = theme('cdm_media_gallerie', array(
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| 207 |
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'mediaList' => $media_list,
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| 208 |
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'galleryName' => CDM_DATAPORTAL_DESCRIPTION_GALLERY_NAME . '_' . $node->feature->uuid,
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| 209 |
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'maxExtend' => $gallery_settings['cdm_dataportal_media_maxextend'],
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'cols' => $gallery_settings['cdm_dataportal_media_cols'],
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| 211 |
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'captionElements' => $captionElements,
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));
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| 213 |
0c7d3099
|
Andreas Kohlbecker
|
return markup_to_render_array($gallery);
|
| 214 |
28c5c87a
|
Andreas Kohlbecker
|
}
|
| 215 |
0c7d3099
|
Andreas Kohlbecker
|
return markup_to_render_array($gallery);
|
| 216 |
28c5c87a
|
Andreas Kohlbecker
|
}
|
| 217 |
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| 218 |
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/**
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| 219 |
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* @param $taxon
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| 220 |
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* @param $descriptionElements
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| 221 |
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* an associative array with two elements:
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| 222 |
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* - '#type': must be 'DTO'
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| 223 |
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* - 'DistributionInfoDTO': a CDM DistributionInfoDTO object as returned by the DistributionInfo web service
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| 224 |
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* @param $feature
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| 225 |
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*
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| 226 |
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* @ingroup compose
|
| 227 |
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*/
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| 228 |
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function compose_feature_block_distribution($taxon, $descriptionElements, $feature) {
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| 229 |
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$text_data_glue = '';
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| 230 |
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$text_data_sortOutArray = FALSE;
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| 231 |
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$text_data_enclosingTag = 'ul';
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| 232 |
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$text_data_out_array = array();
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| 233 |
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| 234 |
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$distributionElements = NULL;
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| 235 |
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$distribution_info_dto = NULL;
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| 236 |
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$distribution_sortOutArray = FALSE;
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| 237 |
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| 238 |
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if (variable_get('distribution_sort', 'NO_SORT') != 'NO_SORT') {
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| 239 |
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$distribution_glue = '';
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| 240 |
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$distribution_enclosingTag = 'dl';
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| 241 |
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} else {
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| 242 |
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$distribution_glue = '';
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| 243 |
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$distribution_enclosingTag = 'ul';
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| 244 |
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}
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| 245 |
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| 246 |
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if (!isset($descriptionElements['#type']) || !$descriptionElements['#type'] == 'DTO') {
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| 247 |
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// skip the DISTRIBUTION section if there is no DTO type element
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| 248 |
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return array(); // FIXME is it ok to return an empty array?
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| 249 |
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}
|
| 250 |
f19f47fa
|
Andreas Kohlbecker
|
|
| 251 |
28c5c87a
|
Andreas Kohlbecker
|
$block = feature_block(
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| 252 |
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cdm_term_representation($feature, 'Unnamed Feature'),
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| 253 |
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$feature
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| 254 |
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);
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| 255 |
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| 256 |
22f5e82d
|
Andreas Kohlbecker
|
// $$descriptionElements['TextData'] is added to to the feature node in merged_taxon_feature_tree()
|
| 257 |
28c5c87a
|
Andreas Kohlbecker
|
if (isset($descriptionElements['TextData'])) {
|
| 258 |
|
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// --- TextData
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| 259 |
|
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foreach ($descriptionElements['TextData'] as $text_data_element) {
|
| 260 |
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$asListElement = FALSE;
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| 261 |
159cd9bb
|
Andreas Kohlbecker
|
$text_data_render_array = compose_cdm_descriptionElementTextData($text_data_element, $asListElement, $text_data_element->feature->uuid);
|
| 262 |
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$repr = drupal_render($text_data_render_array);
|
| 263 |
f19f47fa
|
Andreas Kohlbecker
|
|
| 264 |
159cd9bb
|
Andreas Kohlbecker
|
if (!array_search($repr, $text_data_out_array)) { // de-duplication !!
|
| 265 |
28c5c87a
|
Andreas Kohlbecker
|
$text_data_out_array[] = $repr;
|
| 266 |
c367b0ab
|
Andreas Kohlbecker
|
// TODO HINT: sorting in compose_cdm_feature_block_elements will
|
| 267 |
28c5c87a
|
Andreas Kohlbecker
|
// not work since this array contains html attributes with uuids
|
| 268 |
159cd9bb
|
Andreas Kohlbecker
|
// and what is about cases like the bibliography where
|
| 269 |
|
|
// any content can be prefixed with some foot-note anchors?
|
| 270 |
28c5c87a
|
Andreas Kohlbecker
|
$text_data_sortOutArray = TRUE;
|
| 271 |
|
|
$text_data_glue = '<br/> ';
|
| 272 |
|
|
$text_data_enclosingTag = 'p';
|
| 273 |
|
|
}
|
| 274 |
|
|
}
|
| 275 |
|
|
}
|
| 276 |
|
|
|
| 277 |
|
|
|
| 278 |
|
|
if ($text_data_out_array && variable_get(DISTRIBUTION_TEXTDATA_DISPLAY_ON_TOP, 0)) {
|
| 279 |
6f5c7f2a
|
Andreas Kohlbecker
|
$block->content[] = compose_cdm_feature_block_elements(
|
| 280 |
c367b0ab
|
Andreas Kohlbecker
|
$text_data_out_array,
|
| 281 |
|
|
$feature,
|
| 282 |
|
|
$text_data_glue,
|
| 283 |
|
|
$text_data_sortOutArray,
|
| 284 |
|
|
$text_data_enclosingTag
|
| 285 |
|
|
);
|
| 286 |
28c5c87a
|
Andreas Kohlbecker
|
}
|
| 287 |
|
|
|
| 288 |
|
|
// --- Distribution map
|
| 289 |
|
|
$distribution_map_query_parameters = NULL;
|
| 290 |
|
|
if (isset($descriptionElements['DistributionInfoDTO'])) {
|
| 291 |
|
|
$distribution_map_query_parameters = $descriptionElements['DistributionInfoDTO']->mapUriParams;
|
| 292 |
|
|
}
|
| 293 |
|
|
$map_render_element = compose_distribution_map($taxon, $distribution_map_query_parameters);
|
| 294 |
6f5c7f2a
|
Andreas Kohlbecker
|
$block->content[] = $map_render_element;
|
| 295 |
28c5c87a
|
Andreas Kohlbecker
|
|
| 296 |
|
|
// --- tree or list
|
| 297 |
|
|
$dto_out_array = array();
|
| 298 |
|
|
if (isset($descriptionElements['DistributionInfoDTO'])) {
|
| 299 |
|
|
$distribution_info_dto = $descriptionElements['DistributionInfoDTO'];
|
| 300 |
|
|
|
| 301 |
|
|
// --- tree
|
| 302 |
|
|
if (is_object($distribution_info_dto->tree)) {
|
| 303 |
|
|
$dto_out_array[] = theme('cdm_description_ordered_distributions', array('distribution_tree' => $distribution_info_dto->tree));
|
| 304 |
|
|
}
|
| 305 |
|
|
|
| 306 |
|
|
// --- sorted element list
|
| 307 |
|
|
if (is_array($distribution_info_dto->elements) && count($distribution_info_dto->elements) > 0) {
|
| 308 |
|
|
foreach ($distribution_info_dto->elements as $descriptionElement) {
|
| 309 |
|
|
if (is_object($descriptionElement->area)) {
|
| 310 |
|
|
$sortKey = $descriptionElement->area->representation_L10n;
|
| 311 |
|
|
$distributionElements[$sortKey] = $descriptionElement;
|
| 312 |
|
|
}
|
| 313 |
|
|
}
|
| 314 |
|
|
ksort($distributionElements);
|
| 315 |
44d445c0
|
Andreas Kohlbecker
|
$distribution_element_render_array = compose_cdm_descriptionElement_Distribution($distributionElements);
|
| 316 |
|
|
$dto_out_array[] = drupal_render($distribution_element_render_array);
|
| 317 |
28c5c87a
|
Andreas Kohlbecker
|
|
| 318 |
|
|
}
|
| 319 |
|
|
//
|
| 320 |
6f5c7f2a
|
Andreas Kohlbecker
|
$block->content[] = compose_cdm_feature_block_elements(
|
| 321 |
c367b0ab
|
Andreas Kohlbecker
|
$dto_out_array,
|
| 322 |
|
|
$feature,
|
| 323 |
|
|
$distribution_glue,
|
| 324 |
|
|
$distribution_sortOutArray,
|
| 325 |
|
|
$distribution_enclosingTag
|
| 326 |
|
|
);
|
| 327 |
28c5c87a
|
Andreas Kohlbecker
|
}
|
| 328 |
|
|
|
| 329 |
|
|
// --- TextData at the bottom
|
| 330 |
|
|
if ($text_data_out_array && !variable_get(DISTRIBUTION_TEXTDATA_DISPLAY_ON_TOP, 0)) {
|
| 331 |
6f5c7f2a
|
Andreas Kohlbecker
|
$block->content[] = compose_cdm_feature_block_elements(
|
| 332 |
c367b0ab
|
Andreas Kohlbecker
|
$text_data_out_array,
|
| 333 |
|
|
$feature,
|
| 334 |
|
|
$text_data_glue,
|
| 335 |
|
|
$text_data_sortOutArray,
|
| 336 |
|
|
$text_data_enclosingTag
|
| 337 |
|
|
);
|
| 338 |
28c5c87a
|
Andreas Kohlbecker
|
}
|
| 339 |
|
|
|
| 340 |
6f5c7f2a
|
Andreas Kohlbecker
|
$block->content[] = markup_to_render_array(theme('cdm_footnotes', array('footnoteListKey' => UUID_DISTRIBUTION)));
|
| 341 |
|
|
$block->content[] = markup_to_render_array(theme('cdm_annotation_footnotes', array('footnoteListKey' => UUID_DISTRIBUTION)));
|
| 342 |
28c5c87a
|
Andreas Kohlbecker
|
|
| 343 |
|
|
return $block;
|
| 344 |
|
|
}
|
| 345 |
|
|
|
| 346 |
|
|
|
| 347 |
|
|
/**
|
| 348 |
6657531f
|
Andreas Kohlbecker
|
* @todo Please document this function.
|
| 349 |
|
|
* @see http://drupal.org/node/1354
|
| 350 |
|
|
*/
|
| 351 |
|
|
function theme_FeatureTree_hierarchy($variables) {
|
| 352 |
|
|
|
| 353 |
|
|
$FeatureTreeUuid = $variables['FeatureTreeUuid'];
|
| 354 |
|
|
if (!is_uuid($FeatureTreeUuid)) {
|
| 355 |
|
|
return;
|
| 356 |
|
|
}
|
| 357 |
|
|
|
| 358 |
|
|
$out = '';
|
| 359 |
|
|
$featureTree = cdm_ws_get(CDM_WS_FEATURETREE, array(
|
| 360 |
|
|
$FeatureTreeUuid,
|
| 361 |
|
|
));
|
| 362 |
|
|
|
| 363 |
|
|
if (isset($featureTree) && isset($featureTree->root)) {
|
| 364 |
|
|
$out = '<ul class="' . $featureTree->class . '">';
|
| 365 |
|
|
$out .= theme('FeatureTree_hierarchy_children', array('node' => $featureTree->root));
|
| 366 |
|
|
$out .= '</ul>';
|
| 367 |
|
|
}
|
| 368 |
|
|
return $out;
|
| 369 |
|
|
}
|
| 370 |
|
|
|
| 371 |
|
|
/**
|
| 372 |
|
|
* @todo Please document this function.
|
| 373 |
|
|
* @see http://drupal.org/node/1354
|
| 374 |
|
|
*/
|
| 375 |
|
|
function theme_FeatureTree_hierarchy_children($variables) {
|
| 376 |
|
|
|
| 377 |
|
|
$node = $variables['node'];
|
| 378 |
|
|
$out = '';
|
| 379 |
fae36a2a
|
Andreas Kohlbecker
|
if (isset($node->childNodes)) {
|
| 380 |
6657531f
|
Andreas Kohlbecker
|
|
| 381 |
fae36a2a
|
Andreas Kohlbecker
|
foreach ($node->childNodes as $childNode) {
|
| 382 |
6657531f
|
Andreas Kohlbecker
|
$out .= '<li>' . check_plain($childNode->feature->representation_L10n);
|
| 383 |
fae36a2a
|
Andreas Kohlbecker
|
if (isset($childNode->childNodes) && count($childNode->childNodes) > 0) {
|
| 384 |
6657531f
|
Andreas Kohlbecker
|
$out .= '<ul>' . theme('FeatureTree_hierarchy_children', array('node' => $childNode)) . '</ul>';
|
| 385 |
|
|
}
|
| 386 |
|
|
$out .= '</li>';
|
| 387 |
|
|
}
|
| 388 |
|
|
}
|
| 389 |
|
|
return $out;
|
| 390 |
|
|
}
|
| 391 |
|
|
|
| 392 |
|
|
/**
|
| 393 |
c367b0ab
|
Andreas Kohlbecker
|
* Returns HTML for the texts in a description $elements.
|
| 394 |
6657531f
|
Andreas Kohlbecker
|
*
|
| 395 |
c367b0ab
|
Andreas Kohlbecker
|
* Joins the texts in $elements and encloses with a HTML tag.
|
| 396 |
6657531f
|
Andreas Kohlbecker
|
*
|
| 397 |
c367b0ab
|
Andreas Kohlbecker
|
* @param $elements
|
| 398 |
|
|
* @param feature:
|
| 399 |
|
|
* The feature to which the elements given in $elements are belonging to.
|
| 400 |
|
|
* @param glue:
|
| 401 |
|
|
* Defaults to empty string.
|
| 402 |
|
|
* @param $sort
|
| 403 |
|
|
* Boolean Whether to sort the $elements alphabetically, default is FALSE
|
| 404 |
|
|
* @param $enclosing_tag
|
| 405 |
6657531f
|
Andreas Kohlbecker
|
*
|
| 406 |
c367b0ab
|
Andreas Kohlbecker
|
* @ingroup compose
|
| 407 |
6657531f
|
Andreas Kohlbecker
|
*/
|
| 408 |
c367b0ab
|
Andreas Kohlbecker
|
function compose_cdm_feature_block_elements($elements, $feature, $glue = '', $sort = FALSE, $enclosing_tag = 'ul') {
|
| 409 |
|
|
|
| 410 |
22f5e82d
|
Andreas Kohlbecker
|
$feature_block_settings = get_feature_block_settings($feature->uuid);
|
| 411 |
c367b0ab
|
Andreas Kohlbecker
|
if($feature_block_settings['as_list']){
|
| 412 |
|
|
$enclosing_tag = $feature_block_settings['as_list'];
|
| 413 |
|
|
}
|
| 414 |
28c5c87a
|
Andreas Kohlbecker
|
|
| 415 |
c367b0ab
|
Andreas Kohlbecker
|
$out = '<' . $enclosing_tag . ' class="feature-block-elements" id="' . $feature->representation_L10n . '">';
|
| 416 |
6657531f
|
Andreas Kohlbecker
|
|
| 417 |
c367b0ab
|
Andreas Kohlbecker
|
if ($sort) {
|
| 418 |
|
|
sort($elements);
|
| 419 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 420 |
|
|
|
| 421 |
c367b0ab
|
Andreas Kohlbecker
|
//TODO it would be nice if any element would get "feature-block-element" as additional class attribute
|
| 422 |
|
|
// this will become possible once all $elemets are real Drupal render arrays
|
| 423 |
44d445c0
|
Andreas Kohlbecker
|
$out .= join($glue, $elements) ;
|
| 424 |
6657531f
|
Andreas Kohlbecker
|
|
| 425 |
c367b0ab
|
Andreas Kohlbecker
|
$out .= '</' . $enclosing_tag . '>';
|
| 426 |
6f5c7f2a
|
Andreas Kohlbecker
|
return markup_to_render_array($out);
|
| 427 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 428 |
|
|
|
| 429 |
|
|
|
| 430 |
|
|
/**
|
| 431 |
ac8bfc49
|
Andreas Kohlbecker
|
* Theme function to render CDM DescriptionElements of the type CategoricalData.
|
| 432 |
|
|
*
|
| 433 |
|
|
* @param array $variables
|
| 434 |
|
|
* An associative array containing:
|
| 435 |
|
|
* - element: the CategoricalData element
|
| 436 |
|
|
* @return a html representation of the given CategoricalData element
|
| 437 |
|
|
*
|
| 438 |
|
|
* @ingroup themeable
|
| 439 |
2ba0f3bd
|
Andreas Kohlbecker
|
*/
|
| 440 |
6657531f
|
Andreas Kohlbecker
|
function theme_cdm_descriptionElement_CategoricalData($variables) {
|
| 441 |
|
|
$element = $variables['element'];
|
| 442 |
e9bc1326
|
Andreas Kohlbecker
|
|
| 443 |
6657531f
|
Andreas Kohlbecker
|
$state_data_strings = array();
|
| 444 |
acf3a2e7
|
Andreas Kohlbecker
|
if (isset($element->stateData)) {
|
| 445 |
|
|
foreach ($element->stateData as $stateData) {
|
| 446 |
3445600f
|
Andreas Kohlbecker
|
|
| 447 |
e9bc1326
|
Andreas Kohlbecker
|
$state = NULL;
|
| 448 |
3445600f
|
Andreas Kohlbecker
|
|
| 449 |
e9bc1326
|
Andreas Kohlbecker
|
if(isset($stateData->state)){
|
| 450 |
6657531f
|
Andreas Kohlbecker
|
$state = cdm_term_representation($stateData->state);
|
| 451 |
e9bc1326
|
Andreas Kohlbecker
|
}
|
| 452 |
6657531f
|
Andreas Kohlbecker
|
|
| 453 |
e9bc1326
|
Andreas Kohlbecker
|
if (isset($stateData->modifyingText_L10n)) {
|
| 454 |
3445600f
|
Andreas Kohlbecker
|
$state = ' ' . $stateData->modifyingText_L10n;
|
| 455 |
e9bc1326
|
Andreas Kohlbecker
|
}
|
| 456 |
6657531f
|
Andreas Kohlbecker
|
|
| 457 |
3445600f
|
Andreas Kohlbecker
|
$modifiers_strings = cdm_modifers_representations($stateData);
|
| 458 |
6657531f
|
Andreas Kohlbecker
|
|
| 459 |
3445600f
|
Andreas Kohlbecker
|
$state_data_strings[] = $state . ($modifiers_strings ? ' ' . $modifiers_strings : '');
|
| 460 |
|
|
|
| 461 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 462 |
|
|
}
|
| 463 |
acf3a2e7
|
Andreas Kohlbecker
|
|
| 464 |
|
|
$footnote_key_list_str = cdm_create_description_element_footnotes($element);
|
| 465 |
|
|
|
| 466 |
f19f47fa
|
Andreas Kohlbecker
|
$out = '<span class="' . html_class_attribute_ref($element) . '">' . implode(', ', $state_data_strings) . '</span>';
|
| 467 |
acf3a2e7
|
Andreas Kohlbecker
|
return $out . $footnote_key_list_str;
|
| 468 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 469 |
|
|
|
| 470 |
ac8bfc49
|
Andreas Kohlbecker
|
/**
|
| 471 |
|
|
* Theme function to render CDM DescriptionElements of the type QuantitativeData.
|
| 472 |
|
|
*
|
| 473 |
|
|
* @param array $variables
|
| 474 |
|
|
* An associative array containing:
|
| 475 |
|
|
* - element: the QuantitativeData element
|
| 476 |
|
|
* @return a html representation of the given QuantitativeData element
|
| 477 |
|
|
*
|
| 478 |
|
|
* @ingroup themeable
|
| 479 |
|
|
*/
|
| 480 |
3445600f
|
Andreas Kohlbecker
|
function theme_cdm_descriptionElement_QuantitativeData($variables) {
|
| 481 |
|
|
/*
|
| 482 |
|
|
* - statisticalValues
|
| 483 |
|
|
* - value
|
| 484 |
|
|
* - modifiers
|
| 485 |
|
|
* - type
|
| 486 |
|
|
* - unit->representation_L10n
|
| 487 |
|
|
* - modifyingText
|
| 488 |
|
|
* - modifiers
|
| 489 |
|
|
* - sources
|
| 490 |
|
|
*/
|
| 491 |
|
|
$element = $variables['element'];
|
| 492 |
|
|
|
| 493 |
|
|
$out = '';
|
| 494 |
|
|
|
| 495 |
|
|
$type_representation = NULL;
|
| 496 |
|
|
$modifiers_strings = array();
|
| 497 |
|
|
|
| 498 |
|
|
|
| 499 |
|
|
if (isset($element->statisticalValues)) {
|
| 500 |
|
|
$value_array = array();
|
| 501 |
|
|
foreach ($element->statisticalValues as $val) {
|
| 502 |
|
|
if (isset($val->value)) {
|
| 503 |
|
|
$value_array[] = $val->value;
|
| 504 |
|
|
}
|
| 505 |
|
|
}
|
| 506 |
|
|
|
| 507 |
|
|
$out .= implode($value_array, ', ');
|
| 508 |
|
|
}
|
| 509 |
|
|
|
| 510 |
f19f47fa
|
Andreas Kohlbecker
|
if (isset($element->unit)) {
|
| 511 |
|
|
$out .= ' '. cdm_term_representation($element->unit);
|
| 512 |
3445600f
|
Andreas Kohlbecker
|
}
|
| 513 |
|
|
|
| 514 |
|
|
if (isset($element->statisticalValues->modifyingText_L10n)) {
|
| 515 |
|
|
$out .= ' ' . $element->statisticalValues->modifyingText_L10n;
|
| 516 |
|
|
}
|
| 517 |
28c5c87a
|
Andreas Kohlbecker
|
$modifiers_strings = cdm_modifers_representations($element->statisticalValues);
|
| 518 |
|
|
$out .= ($modifiers_strings ? ' ' . cdm_modifers_representations($element->statisticalValues) : '');
|
| 519 |
3445600f
|
Andreas Kohlbecker
|
|
| 520 |
1f11e206
|
Andreas Kohlbecker
|
$footnote_key_list_str = cdm_create_description_element_footnotes($element);
|
| 521 |
3445600f
|
Andreas Kohlbecker
|
|
| 522 |
1f11e206
|
Andreas Kohlbecker
|
return $out . $footnote_key_list_str;
|
| 523 |
3445600f
|
Andreas Kohlbecker
|
|
| 524 |
|
|
}
|
| 525 |
|
|
|
| 526 |
2ba0f3bd
|
Andreas Kohlbecker
|
/**
|
| 527 |
|
|
* Theme function to render CDM DescriptionElements of the type IndividualsAssociations.
|
| 528 |
|
|
*
|
| 529 |
ac8bfc49
|
Andreas Kohlbecker
|
* @param array $variables
|
| 530 |
|
|
* An associative array containing:
|
| 531 |
|
|
* - element: the IndividualsAssociations element
|
| 532 |
|
|
* @return html representation of the given IndividualsAssociations element
|
| 533 |
|
|
*
|
| 534 |
|
|
* @ingroup themeable
|
| 535 |
2ba0f3bd
|
Andreas Kohlbecker
|
*/
|
| 536 |
|
|
function theme_cdm_descriptionElement_IndividualsAssociation($variables) {
|
| 537 |
|
|
|
| 538 |
|
|
$element = $variables['element'];
|
| 539 |
|
|
|
| 540 |
|
|
$out = '';
|
| 541 |
|
|
|
| 542 |
|
|
$render_array = compose_cdm_specimenOrObservation($element->associatedSpecimenOrObservation);
|
| 543 |
|
|
|
| 544 |
|
|
if (isset($element->description_L10n)) {
|
| 545 |
|
|
$out .= ' ' . $element->description_L10n;
|
| 546 |
|
|
}
|
| 547 |
|
|
|
| 548 |
|
|
$out .= drupal_render($render_array);
|
| 549 |
1f11e206
|
Andreas Kohlbecker
|
|
| 550 |
|
|
$footnote_key_list_str = cdm_create_description_element_footnotes($element);
|
| 551 |
|
|
|
| 552 |
|
|
return $out . $footnote_key_list_str;
|
| 553 |
2ba0f3bd
|
Andreas Kohlbecker
|
|
| 554 |
|
|
|
| 555 |
|
|
}
|
| 556 |
|
|
|
| 557 |
|
|
/**
|
| 558 |
|
|
* Theme function to render CDM DescriptionElements of the type TaxonInteraction.
|
| 559 |
|
|
*
|
| 560 |
ac8bfc49
|
Andreas Kohlbecker
|
* @param array $variables
|
| 561 |
|
|
* An associative array containing:
|
| 562 |
|
|
* - element: the TaxonInteraction element
|
| 563 |
|
|
* @return html representation of the given TaxonInteraction element
|
| 564 |
|
|
*
|
| 565 |
|
|
* @ingroup themeable
|
| 566 |
2ba0f3bd
|
Andreas Kohlbecker
|
*/
|
| 567 |
|
|
function theme_cdm_descriptionElement_TaxonInteraction($variables) {
|
| 568 |
|
|
|
| 569 |
|
|
$element = $variables['element'];
|
| 570 |
|
|
|
| 571 |
|
|
$out = '';
|
| 572 |
|
|
|
| 573 |
|
|
if (isset($element->description_L10n)) {
|
| 574 |
|
|
$out .= ' ' . $element->description_L10n;
|
| 575 |
|
|
}
|
| 576 |
|
|
|
| 577 |
|
|
if(isset($element->taxon2)){
|
| 578 |
|
|
$out = theme('cdm_taxonName',
|
| 579 |
|
|
array(
|
| 580 |
5b3557f9
|
Andreas Kohlbecker
|
'taxonName' => $element->taxon2->name,
|
| 581 |
05e1b851
|
Andreas Kohlbecker
|
'nameLink' => url(path_to_taxon($element->taxon2->uuid))
|
| 582 |
2ba0f3bd
|
Andreas Kohlbecker
|
)
|
| 583 |
|
|
);
|
| 584 |
|
|
}
|
| 585 |
|
|
|
| 586 |
1f11e206
|
Andreas Kohlbecker
|
$footnote_key_list_str = cdm_create_description_element_footnotes($element);
|
| 587 |
|
|
|
| 588 |
|
|
return $out . $footnote_key_list_str;
|
| 589 |
2ba0f3bd
|
Andreas Kohlbecker
|
|
| 590 |
|
|
|
| 591 |
|
|
}
|
| 592 |
|
|
|
| 593 |
6657531f
|
Andreas Kohlbecker
|
/**
|
| 594 |
44d445c0
|
Andreas Kohlbecker
|
* Composes a drupal render array for CDM TextData description elements.
|
| 595 |
6657531f
|
Andreas Kohlbecker
|
*
|
| 596 |
159cd9bb
|
Andreas Kohlbecker
|
* @param $element
|
| 597 |
|
|
* The CDM TextData description element which contains the textual information.
|
| 598 |
|
|
* @param $asListElement
|
| 599 |
|
|
* A boolean which determines whether the citations should
|
| 600 |
6657531f
|
Andreas Kohlbecker
|
* be rendered as a list or not.
|
| 601 |
159cd9bb
|
Andreas Kohlbecker
|
* TODO remove and replace $asListElement by $feature_block_settings['as_list']
|
| 602 |
|
|
* @param $feature_uuid
|
| 603 |
6657531f
|
Andreas Kohlbecker
|
*
|
| 604 |
159cd9bb
|
Andreas Kohlbecker
|
* @return array
|
| 605 |
|
|
* A drupal render array with the following elements being used:
|
| 606 |
|
|
* - #tag: either 'div', 'li', ...
|
| 607 |
|
|
* ⁻ #attributes: class attributes
|
| 608 |
|
|
* - #value_prefix: (optionally) contains footnote anchors
|
| 609 |
|
|
* - #value: contains the textual content
|
| 610 |
|
|
* - #value_suffix: (optionally) contains footnote keys
|
| 611 |
|
|
*
|
| 612 |
|
|
* @ingroup compose
|
| 613 |
6657531f
|
Andreas Kohlbecker
|
*/
|
| 614 |
159cd9bb
|
Andreas Kohlbecker
|
function compose_cdm_descriptionElementTextData($element, $asListElement, $feature_uuid) {
|
| 615 |
235fc94b
|
Andreas Kohlbecker
|
|
| 616 |
6f5c7f2a
|
Andreas Kohlbecker
|
$footnote_list_key_suggestion = $feature_uuid;
|
| 617 |
22f5e82d
|
Andreas Kohlbecker
|
|
| 618 |
|
|
// FIXME $feature_block_settings should be passed as parameter!!!!!
|
| 619 |
|
|
$feature_block_settings = get_feature_block_settings($feature_uuid);
|
| 620 |
f3a04cfa
|
Andreas Kohlbecker
|
$do_references_inline = $feature_block_settings['sources_as_content'];
|
| 621 |
22f5e82d
|
Andreas Kohlbecker
|
|
| 622 |
|
|
// FIXME remove this hack ---------------------------
|
| 623 |
|
|
$default_theme = variable_get('theme_default', NULL);
|
| 624 |
|
|
if($default_theme == 'garland_cichorieae' || $default_theme == 'cyprus'
|
| 625 |
|
|
|| $default_theme == 'flore_afrique_centrale' || $default_theme == 'flora_malesiana' || $default_theme == 'flore_gabon' ){
|
| 626 |
|
|
$asListElement = $feature_block_settings['as_list'] == 'ul';
|
| 627 |
|
|
}
|
| 628 |
|
|
// --------------------------------------------------
|
| 629 |
235fc94b
|
Andreas Kohlbecker
|
|
| 630 |
159cd9bb
|
Andreas Kohlbecker
|
$render_array = array(
|
| 631 |
|
|
'#type' => 'html_tag',
|
| 632 |
|
|
'#tag' => $asListElement ? 'li' : 'span',
|
| 633 |
|
|
'#attributes' => array(
|
| 634 |
|
|
'class' => 'DescriptionElement DescriptionElement-' . $element->class . '
|
| 635 |
|
|
' . html_class_attribute_ref($element)
|
| 636 |
|
|
),
|
| 637 |
|
|
'#value' => '',
|
| 638 |
|
|
'#value_suffix' => NULL
|
| 639 |
|
|
);
|
| 640 |
|
|
|
| 641 |
44d445c0
|
Andreas Kohlbecker
|
$element_text = '';
|
| 642 |
6657531f
|
Andreas Kohlbecker
|
if (isset($element->multilanguageText_L10n->text)) {
|
| 643 |
44d445c0
|
Andreas Kohlbecker
|
// TODO replacement of \n by <br> should be configurable
|
| 644 |
|
|
$element_text = str_replace("\n", "<br/>", $element->multilanguageText_L10n->text);
|
| 645 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 646 |
28c5c87a
|
Andreas Kohlbecker
|
|
| 647 |
44d445c0
|
Andreas Kohlbecker
|
$annotations_and_sources = handle_annotations_and_sources($element, $do_references_inline, $feature_block_settings, $element_text, $footnote_list_key_suggestion);
|
| 648 |
b5854b72
|
Andreas Kohlbecker
|
|
| 649 |
44d445c0
|
Andreas Kohlbecker
|
$names_used_in_source_markup = '';
|
| 650 |
|
|
if (!empty($annotations_and_sources['names_used_in_source']) && empty($element_text)) {
|
| 651 |
|
|
// $element_text == NULL usually occurs only in the case of CITATIONS!!!
|
| 652 |
|
|
$names_used_in_source_markup = join(', ', $annotations_and_sources['names_used_in_source']) . ': ';
|
| 653 |
|
|
}
|
| 654 |
22f5e82d
|
Andreas Kohlbecker
|
|
| 655 |
44d445c0
|
Andreas Kohlbecker
|
$source_references_markup = '';
|
| 656 |
|
|
if(!empty($annotations_and_sources['source_references'])){
|
| 657 |
|
|
$source_references_markup = '<span class="sources">'. join(' ', $annotations_and_sources['source_references']) . '<span>';
|
| 658 |
|
|
}
|
| 659 |
6657531f
|
Andreas Kohlbecker
|
|
| 660 |
44d445c0
|
Andreas Kohlbecker
|
$render_array['#value'] = $names_used_in_source_markup . $element_text . $source_references_markup;
|
| 661 |
|
|
$render_array['#value-suffix'] = $annotations_and_sources['foot_note_keys'];
|
| 662 |
22f5e82d
|
Andreas Kohlbecker
|
|
| 663 |
44d445c0
|
Andreas Kohlbecker
|
return $render_array;
|
| 664 |
|
|
}
|
| 665 |
22f5e82d
|
Andreas Kohlbecker
|
|
| 666 |
44d445c0
|
Andreas Kohlbecker
|
/**
|
| 667 |
|
|
* @param $element
|
| 668 |
|
|
* @param $do_references_inline
|
| 669 |
|
|
* @param $feature_block_settings
|
| 670 |
|
|
* @param $element_text
|
| 671 |
|
|
* @param $footnote_list_key_suggestion
|
| 672 |
|
|
* @return array
|
| 673 |
|
|
* an associative array with the following elements:
|
| 674 |
|
|
* - foot_note_keys: all footnote keys as markup
|
| 675 |
|
|
* - source_references: an array of the source references citations
|
| 676 |
|
|
* - names used in source: an associative array of the names in source,
|
| 677 |
|
|
* the name in source string are deduplicated
|
| 678 |
|
|
* !!!NOTE!!!!: this field will most probably be removed soon (TODO)
|
| 679 |
|
|
*
|
| 680 |
|
|
*
|
| 681 |
|
|
*/
|
| 682 |
|
|
function handle_annotations_and_sources($element, $do_references_inline, $feature_block_settings, $element_text, $footnote_list_key_suggestion) {
|
| 683 |
|
|
$annotations_and_sources = array(
|
| 684 |
|
|
'foot_note_keys' => NULL,
|
| 685 |
|
|
'source_references' => array(),
|
| 686 |
|
|
'names_used_in_source' => array()
|
| 687 |
6f5c7f2a
|
Andreas Kohlbecker
|
);
|
| 688 |
6657531f
|
Andreas Kohlbecker
|
|
| 689 |
44d445c0
|
Andreas Kohlbecker
|
if ($do_references_inline) {
|
| 690 |
|
|
foreach ($element->sources as $source) {
|
| 691 |
f3a04cfa
|
Andreas Kohlbecker
|
|
| 692 |
44d445c0
|
Andreas Kohlbecker
|
$referenceCitation = theme('cdm_OriginalSource',
|
| 693 |
|
|
array(
|
| 694 |
|
|
'source' => $source,
|
| 695 |
|
|
'doLink' => $feature_block_settings['link_to_reference']
|
| 696 |
|
|
)
|
| 697 |
|
|
);
|
| 698 |
6657531f
|
Andreas Kohlbecker
|
|
| 699 |
44d445c0
|
Andreas Kohlbecker
|
if ($referenceCitation) {
|
| 700 |
|
|
if (empty($element_text)) {
|
| 701 |
|
|
$annotations_and_sources['source_references'][] = $referenceCitation;
|
| 702 |
|
|
}
|
| 703 |
|
|
else {
|
| 704 |
|
|
$annotations_and_sources['source_references'][] = ' (' . $referenceCitation . ')';
|
| 705 |
|
|
}
|
| 706 |
|
|
}
|
| 707 |
6f5c7f2a
|
Andreas Kohlbecker
|
|
| 708 |
44d445c0
|
Andreas Kohlbecker
|
if (isset($source->nameUsedInSource->uuid) && isset($source->nameUsedInSource->titleCache)) {
|
| 709 |
|
|
// it is a DescriptionElementSource
|
| 710 |
|
|
if ($feature_block_settings['link_to_name_used_in_source']) {
|
| 711 |
|
|
// using the titleCache as key to avoid duplicate entries
|
| 712 |
|
|
$annotations_and_sources['names_used_in_source'][$source->nameUsedInSource->titleCache] = l(
|
| 713 |
|
|
$source->nameUsedInSource->titleCache,
|
| 714 |
|
|
path_to_name($source->nameUsedInSource->uuid),
|
| 715 |
|
|
array(
|
| 716 |
|
|
'attributes' => array(),
|
| 717 |
|
|
'absolute' => TRUE,
|
| 718 |
|
|
'html' => TRUE,
|
| 719 |
|
|
));
|
| 720 |
|
|
}
|
| 721 |
|
|
else {
|
| 722 |
|
|
// using the titleCache as key to avoid duplicate entries
|
| 723 |
|
|
$annotations_and_sources['names_used_in_source'][$source->nameUsedInSource->titleCache] = $source->nameUsedInSource->titleCache;
|
| 724 |
|
|
}
|
| 725 |
|
|
}
|
| 726 |
|
|
else if (isset($source->originalNameString) && !empty($source->originalNameString)) {
|
| 727 |
|
|
// the name used in source can not be expressed as valid taxon name,
|
| 728 |
|
|
// so the editor has chosen to put the freetext name into ReferencedEntityBase.originalNameString
|
| 729 |
|
|
// field
|
| 730 |
|
|
// using the originalNameString as key to avoid duplicate entries
|
| 731 |
|
|
$annotations_and_sources['names_used_in_source'][$source->originalNameString] = $source->originalNameString;
|
| 732 |
|
|
}
|
| 733 |
|
|
} // END of loop over sources
|
| 734 |
|
|
|
| 735 |
|
|
// annotations footnotes separate.
|
| 736 |
|
|
$annotations_and_sources['foot_note_keys'] = theme('cdm_annotations_as_footnotekeys',
|
| 737 |
|
|
array(
|
| 738 |
|
|
'cdmBase_list' => $element,
|
| 739 |
|
|
'footnote_list_key' => $footnote_list_key_suggestion,
|
| 740 |
|
|
)
|
| 741 |
|
|
);
|
| 742 |
|
|
|
| 743 |
|
|
} // END of references inline
|
| 744 |
|
|
|
| 745 |
|
|
if (!$do_references_inline || $feature_block_settings['sources_as_content_to_bibliography']) {
|
| 746 |
|
|
$annotations_and_sources['foot_note_keys'] = cdm_create_description_element_footnotes($element, ',', $footnote_list_key_suggestion);
|
| 747 |
|
|
return $annotations_and_sources;
|
| 748 |
6f5c7f2a
|
Andreas Kohlbecker
|
}
|
| 749 |
44d445c0
|
Andreas Kohlbecker
|
return $annotations_and_sources;
|
| 750 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 751 |
092744e1
|
Andreas Kohlbecker
|
|
| 752 |
44d445c0
|
Andreas Kohlbecker
|
/**
|
| 753 |
28c5c87a
|
Andreas Kohlbecker
|
* Composes block of common names for the given DescriptionElements $elements which must be of the feature CommonName
|
| 754 |
|
|
*
|
| 755 |
|
|
* @parameter $elements
|
| 756 |
|
|
* an array of CDM DescriptionElements either of type CommonName or TextData
|
| 757 |
|
|
* @parameter $feature
|
| 758 |
|
|
* the common feature of all $elements, must be CommonName
|
| 759 |
|
|
*
|
| 760 |
|
|
* @return
|
| 761 |
|
|
* A drupal render array
|
| 762 |
|
|
*
|
| 763 |
|
|
* @ingroup compose
|
| 764 |
6657531f
|
Andreas Kohlbecker
|
*/
|
| 765 |
6f5c7f2a
|
Andreas Kohlbecker
|
function compose_cdm_common_names($elements, $feature, $weight = FALSE) {
|
| 766 |
28c5c87a
|
Andreas Kohlbecker
|
|
| 767 |
6657531f
|
Andreas Kohlbecker
|
$common_name_out = '';
|
| 768 |
28c5c87a
|
Andreas Kohlbecker
|
$common_name_feature_elements = array();
|
| 769 |
6657531f
|
Andreas Kohlbecker
|
$textData_commonNames = array();
|
| 770 |
|
|
|
| 771 |
28c5c87a
|
Andreas Kohlbecker
|
$footnote_key_suggestion = 'common-names-feature-block';
|
| 772 |
|
|
|
| 773 |
6657531f
|
Andreas Kohlbecker
|
if (is_array($elements)) {
|
| 774 |
|
|
foreach ($elements as $element) {
|
| 775 |
28c5c87a
|
Andreas Kohlbecker
|
|
| 776 |
6657531f
|
Andreas Kohlbecker
|
if ($element->class == 'CommonTaxonName') {
|
| 777 |
20143e0d
|
Andreas Kohlbecker
|
|
| 778 |
|
|
// common name without a language or area, should not happen but is possible
|
| 779 |
|
|
$language_area_key = '';
|
| 780 |
6657531f
|
Andreas Kohlbecker
|
if (isset($element->language->representation_L10n)) {
|
| 781 |
20143e0d
|
Andreas Kohlbecker
|
$language_area_key .= '<b>' . $element->language->representation_L10n . '</b>';
|
| 782 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 783 |
20143e0d
|
Andreas Kohlbecker
|
if(isset($element->area->titleCache) && strlen($element->area->titleCache) > 0){
|
| 784 |
|
|
$language_area_key .= ($language_area_key ? ' ' : '') . '(' . $element->area->titleCache . ')';
|
| 785 |
ae0a5060
|
Andreas Kohlbecker
|
}
|
| 786 |
20143e0d
|
Andreas Kohlbecker
|
|
| 787 |
ae0a5060
|
Andreas Kohlbecker
|
if(isset($common_names[$language_area_key][$element->name])) {
|
| 788 |
|
|
// same name already exists for language and areae combination, se we merge the description elements
|
| 789 |
|
|
cdm_merge_description_elements($common_names[$language_area_key][$element->name], $element);
|
| 790 |
|
|
} else{
|
| 791 |
|
|
// otherwise add as new entry
|
| 792 |
|
|
$common_names[$language_area_key][$element->name] = $element;
|
| 793 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 794 |
20143e0d
|
Andreas Kohlbecker
|
|
| 795 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 796 |
|
|
elseif ($element->class == 'TextData') {
|
| 797 |
|
|
$textData_commonNames[] = $element;
|
| 798 |
|
|
}
|
| 799 |
|
|
}
|
| 800 |
|
|
}
|
| 801 |
|
|
// Handling common names.
|
| 802 |
|
|
if (isset($common_names) && count($common_names) > 0) {
|
| 803 |
|
|
// Sorting the array based on the key (language, + area if set).
|
| 804 |
|
|
// Comment @WA there are common names without a language, so this sorting
|
| 805 |
|
|
// can give strange results.
|
| 806 |
|
|
ksort($common_names);
|
| 807 |
|
|
|
| 808 |
28c5c87a
|
Andreas Kohlbecker
|
// loop over set of elements per language area
|
| 809 |
|
|
foreach ($common_names as $language_area_key => $elements) {
|
| 810 |
ae0a5060
|
Andreas Kohlbecker
|
ksort($elements); // sort names alphabetically
|
| 811 |
28c5c87a
|
Andreas Kohlbecker
|
$per_language_area_out = array();
|
| 812 |
|
|
// loop over set of individual elements
|
| 813 |
6657531f
|
Andreas Kohlbecker
|
foreach ($elements as $element) {
|
| 814 |
|
|
if ($element->name) {
|
| 815 |
28c5c87a
|
Andreas Kohlbecker
|
$per_language_area_out[] = '<span class="' . html_class_attribute_ref($element) . '">'
|
| 816 |
|
|
. $element->name . cdm_create_description_element_footnotes($element, ',', $footnote_key_suggestion) . '</span>';
|
| 817 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 818 |
28c5c87a
|
Andreas Kohlbecker
|
} // End of loop over set of individual elements
|
| 819 |
c367b0ab
|
Andreas Kohlbecker
|
$common_name_feature_elements[] = ($language_area_key ? $language_area_key . ': ' : '' ) . join(', ', $per_language_area_out);
|
| 820 |
28c5c87a
|
Andreas Kohlbecker
|
} // End of loop over set of elements per language area
|
| 821 |
|
|
|
| 822 |
|
|
|
| 823 |
6f5c7f2a
|
Andreas Kohlbecker
|
$common_name_feature_elements_render_array = compose_cdm_feature_block_elements(
|
| 824 |
|
|
$common_name_feature_elements,
|
| 825 |
|
|
$feature,
|
| 826 |
|
|
'; ',
|
| 827 |
|
|
FALSE,
|
| 828 |
|
|
'div'
|
| 829 |
c367b0ab
|
Andreas Kohlbecker
|
);
|
| 830 |
6f5c7f2a
|
Andreas Kohlbecker
|
$common_name_out .= $common_name_feature_elements_render_array['#markup'];
|
| 831 |
28c5c87a
|
Andreas Kohlbecker
|
|
| 832 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 833 |
28c5c87a
|
Andreas Kohlbecker
|
|
| 834 |
6657531f
|
Andreas Kohlbecker
|
// Handling commons names as text data.
|
| 835 |
28c5c87a
|
Andreas Kohlbecker
|
$text_data_out = array();
|
| 836 |
|
|
|
| 837 |
6657531f
|
Andreas Kohlbecker
|
foreach ($textData_commonNames as $text_data_element) {
|
| 838 |
28c5c87a
|
Andreas Kohlbecker
|
/* footnotes are not handled correctly in theme_cdm_descriptionElementTextData,
|
| 839 |
|
|
need to set 'common-names-feature-block' as $footnote_key_suggestion */
|
| 840 |
|
|
RenderHints::setFootnoteListKey($footnote_key_suggestion);
|
| 841 |
159cd9bb
|
Andreas Kohlbecker
|
$text_data_render_array = compose_cdm_descriptionElementTextData($text_data_element, TRUE, $text_data_element->feature->uuid);
|
| 842 |
|
|
$text_data_out[] = drupal_render($text_data_render_array);
|
| 843 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 844 |
|
|
|
| 845 |
c367b0ab
|
Andreas Kohlbecker
|
$common_name_out_text_data = compose_cdm_feature_block_elements(
|
| 846 |
|
|
$text_data_out,
|
| 847 |
|
|
$feature
|
| 848 |
28c5c87a
|
Andreas Kohlbecker
|
);
|
| 849 |
6657531f
|
Andreas Kohlbecker
|
|
| 850 |
28c5c87a
|
Andreas Kohlbecker
|
|
| 851 |
|
|
$footnotes = theme('cdm_footnotes', array('footnoteListKey' => $footnote_key_suggestion)); // FIXME is this needed at all?
|
| 852 |
|
|
$footnotes .= theme('cdm_annotation_footnotes', array('footnoteListKey' => $footnote_key_suggestion));
|
| 853 |
|
|
|
| 854 |
|
|
return markup_to_render_array(
|
| 855 |
|
|
'<div class="common_names_as_common_names">' . $common_name_out . '</div>'
|
| 856 |
6f5c7f2a
|
Andreas Kohlbecker
|
.'<div class="common_names_as_text_data">' . $common_name_out_text_data['#markup'] . '</div>'
|
| 857 |
|
|
.$footnotes,
|
| 858 |
|
|
$weight
|
| 859 |
28c5c87a
|
Andreas Kohlbecker
|
);
|
| 860 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 861 |
|
|
|
| 862 |
|
|
/**
|
| 863 |
|
|
* Return HTML for a list of description elements.
|
| 864 |
|
|
*
|
| 865 |
|
|
* Usually these are of a specific feature type.
|
| 866 |
|
|
*
|
| 867 |
6f5c7f2a
|
Andreas Kohlbecker
|
* @param $descriptionElements
|
| 868 |
|
|
* array of descriptionElements which belong to the same feature.
|
| 869 |
|
|
* These descriptions elements of a Description must be ordered by the chosen feature tree by
|
| 870 |
|
|
* calling the function _mergeFeatureTreeDescriptions().
|
| 871 |
|
|
* @see _mergeFeatureTreeDescriptions()
|
| 872 |
159cd9bb
|
Andreas Kohlbecker
|
*
|
| 873 |
|
|
* @param $feature_uuid
|
| 874 |
|
|
*
|
| 875 |
|
|
* @return
|
| 876 |
|
|
* A drupal render array for the $descriptionElements, may be an empty array if the textual content was empty.
|
| 877 |
|
|
* Footnote key or anchors are not considered to be textual content.
|
| 878 |
6657531f
|
Andreas Kohlbecker
|
*
|
| 879 |
6f5c7f2a
|
Andreas Kohlbecker
|
* @ingroup compose
|
| 880 |
6657531f
|
Andreas Kohlbecker
|
*/
|
| 881 |
fa782b11
|
Andreas Kohlbecker
|
function compose_cdm_descriptionElements($descriptionElements, $feature) {
|
| 882 |
235fc94b
|
Andreas Kohlbecker
|
|
| 883 |
159cd9bb
|
Andreas Kohlbecker
|
$render_array = array();
|
| 884 |
|
|
$elements_out_array = array();
|
| 885 |
6f5c7f2a
|
Andreas Kohlbecker
|
$distribution_tree = null;
|
| 886 |
6657531f
|
Andreas Kohlbecker
|
|
| 887 |
159cd9bb
|
Andreas Kohlbecker
|
/*
|
| 888 |
|
|
* $feature_block_has_content will be set true if at least one of the
|
| 889 |
|
|
* $descriptionElements contains some text which makes up some content
|
| 890 |
|
|
* for the feature block. Footnote keys are not considered
|
| 891 |
|
|
* to be content in this sense.
|
| 892 |
|
|
*/
|
| 893 |
|
|
$feature_block_has_content = false;
|
| 894 |
|
|
|
| 895 |
6657531f
|
Andreas Kohlbecker
|
/*
|
| 896 |
092744e1
|
Andreas Kohlbecker
|
$userDefined = mixed_variable_get(LAYOUT_SETTING_PREFIX . $feature_uuid, FEATURE_TREE_LAYOUT_DEFAULTS);
|
| 897 |
bfb2b81a
|
Andreas Kohlbecker
|
if(variable_get('distribution_sort',
|
| 898 |
|
|
'NO_SORT') != 'NO_SORT'){
|
| 899 |
|
|
$glue = '';
|
| 900 |
|
|
$enclosingTag = 'dl';
|
| 901 |
|
|
$entryEnclosingTag = NULL;
|
| 902 |
|
|
} else if($userDefined &&
|
| 903 |
|
|
$userDefined['enabled']){
|
| 904 |
|
|
$glue = $userDefined['glue'];
|
| 905 |
|
|
$enclosingTag = $userDefined['enclosingTag'];
|
| 906 |
|
|
$entryEnclosingTag = $userDefined['entryEnclosingTag'];
|
| 907 |
|
|
} else { // TODO remove once LAYOUT_SETTING_PREFIX-{uuid} setting are configured to work for all portals(selenium test still missing!!!)
|
| 908 |
|
|
$glue = ''; $enclosingTag = 'ul';
|
| 909 |
|
|
$entryEnclosingTag = NULL ;
|
| 910 |
|
|
}
|
| 911 |
6657531f
|
Andreas Kohlbecker
|
*/
|
| 912 |
|
|
|
| 913 |
|
|
RenderHints::pushToRenderStack('cdm_descriptionElements');
|
| 914 |
|
|
|
| 915 |
2fc97419
|
Andreas Kohlbecker
|
if (is_array($descriptionElements)) {
|
| 916 |
092744e1
|
Andreas Kohlbecker
|
// --- normal description element arrays
|
| 917 |
6657531f
|
Andreas Kohlbecker
|
foreach ($descriptionElements as $descriptionElement) {
|
| 918 |
|
|
|
| 919 |
|
|
// --- IMAGE_SOURCES --- //
|
| 920 |
092744e1
|
Andreas Kohlbecker
|
if ($descriptionElement->feature->uuid == UUID_IMAGE_SOURCES) {
|
| 921 |
6657531f
|
Andreas Kohlbecker
|
$image_sources[] = $descriptionElement;
|
| 922 |
|
|
}
|
| 923 |
|
|
// --- USE TEXTDATA --- //
|
| 924 |
|
|
elseif ($descriptionElement->feature->uuid == UUID_USE) {
|
| 925 |
|
|
// Do nothing to avoid rendering.
|
| 926 |
|
|
} else {
|
| 927 |
|
|
/* decide based on the description element class
|
| 928 |
22f5e82d
|
Andreas Kohlbecker
|
*
|
| 929 |
|
|
* Features handled here:
|
| 930 |
|
|
* all except DISTRIBUTION, COMMON_NAME, USES, IMAGES,
|
| 931 |
|
|
*
|
| 932 |
6657531f
|
Andreas Kohlbecker
|
*
|
| 933 |
f3a04cfa
|
Andreas Kohlbecker
|
* TODO provide api_hook as extension point for this?
|
| 934 |
6657531f
|
Andreas Kohlbecker
|
*/
|
| 935 |
f3a04cfa
|
Andreas Kohlbecker
|
$feature_block_settings = get_feature_block_settings($descriptionElement->feature->uuid);
|
| 936 |
|
|
$asListElement = $feature_block_settings['as_list'] == 'ul';
|
| 937 |
6657531f
|
Andreas Kohlbecker
|
switch ($descriptionElement->class) {
|
| 938 |
|
|
case 'TextData':
|
| 939 |
159cd9bb
|
Andreas Kohlbecker
|
$text_data_render_array = compose_cdm_descriptionElementTextData($descriptionElement, $asListElement, $descriptionElement->feature->uuid);
|
| 940 |
|
|
$feature_block_has_content = $feature_block_has_content || !empty($text_data_render_array['#value']);
|
| 941 |
|
|
$elements_out_array[] = drupal_render($text_data_render_array);
|
| 942 |
6657531f
|
Andreas Kohlbecker
|
break;
|
| 943 |
|
|
case 'CategoricalData':
|
| 944 |
159cd9bb
|
Andreas Kohlbecker
|
$feature_block_has_content = true;
|
| 945 |
|
|
$elements_out_array[] = theme('cdm_descriptionElement_CategoricalData', array('element' => $descriptionElement));
|
| 946 |
6657531f
|
Andreas Kohlbecker
|
break;
|
| 947 |
f19f47fa
|
Andreas Kohlbecker
|
case 'QuantitativeData':
|
| 948 |
159cd9bb
|
Andreas Kohlbecker
|
$feature_block_has_content = true;
|
| 949 |
|
|
$elements_out_array[] = theme('cdm_descriptionElement_QuantitativeData', array('element' => $descriptionElement));
|
| 950 |
3445600f
|
Andreas Kohlbecker
|
break;
|
| 951 |
2ba0f3bd
|
Andreas Kohlbecker
|
case 'IndividualsAssociation':
|
| 952 |
159cd9bb
|
Andreas Kohlbecker
|
$feature_block_has_content = true;
|
| 953 |
|
|
$elements_out_array[] = theme('cdm_descriptionElement_IndividualsAssociation', array('element' => $descriptionElement));
|
| 954 |
2ba0f3bd
|
Andreas Kohlbecker
|
break;
|
| 955 |
|
|
case 'TaxonInteraction':
|
| 956 |
159cd9bb
|
Andreas Kohlbecker
|
$feature_block_has_content = true;
|
| 957 |
|
|
$elements_out_array[] = theme('cdm_descriptionElement_TaxonInteraction', array('element' => $descriptionElement));
|
| 958 |
2ba0f3bd
|
Andreas Kohlbecker
|
break;
|
| 959 |
3445600f
|
Andreas Kohlbecker
|
case 'Uses':
|
| 960 |
29809fe3
|
Andreas Kohlbecker
|
/* IGNORE Uses classes, these are handled completely in theme_cdm_UseDescription */
|
| 961 |
6657531f
|
Andreas Kohlbecker
|
break;
|
| 962 |
|
|
default:
|
| 963 |
159cd9bb
|
Andreas Kohlbecker
|
$feature_block_has_content = true;
|
| 964 |
|
|
$elements_out_array[] = '<li>No method for rendering unknown description class: ' . $descriptionElement->class . '</li>';
|
| 965 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 966 |
|
|
}
|
| 967 |
092744e1
|
Andreas Kohlbecker
|
} // --- END loop over normal description element arrays
|
| 968 |
6657531f
|
Andreas Kohlbecker
|
|
| 969 |
c367b0ab
|
Andreas Kohlbecker
|
// If feature = CITATION sort the list of sources.
|
| 970 |
092744e1
|
Andreas Kohlbecker
|
// This is ONLY for FLORA MALESIANA and FLORE d'AFRIQUE CENTRALE.
|
| 971 |
c367b0ab
|
Andreas Kohlbecker
|
if ($descriptionElement->feature->uuid == UUID_CITATION) {
|
| 972 |
159cd9bb
|
Andreas Kohlbecker
|
sort($elements_out_array);
|
| 973 |
092744e1
|
Andreas Kohlbecker
|
}
|
| 974 |
6657531f
|
Andreas Kohlbecker
|
|
| 975 |
092744e1
|
Andreas Kohlbecker
|
if (isset($image_sources)) {
|
| 976 |
159cd9bb
|
Andreas Kohlbecker
|
$elements_out_array[] = theme('cdm_description_element_image_source', array('image_sources' => $image_sources, 'asListElement' => TRUE));
|
| 977 |
092744e1
|
Andreas Kohlbecker
|
}
|
| 978 |
|
|
} // END normal description element arrays
|
| 979 |
6657531f
|
Andreas Kohlbecker
|
|
| 980 |
159cd9bb
|
Andreas Kohlbecker
|
if($feature_block_has_content){
|
| 981 |
|
|
$render_array = compose_cdm_feature_block_elements(
|
| 982 |
|
|
$elements_out_array,
|
| 983 |
|
|
$feature
|
| 984 |
|
|
);
|
| 985 |
|
|
}
|
| 986 |
6657531f
|
Andreas Kohlbecker
|
|
| 987 |
|
|
RenderHints::popFromRenderStack();
|
| 988 |
6f5c7f2a
|
Andreas Kohlbecker
|
return $render_array;
|
| 989 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 990 |
|
|
|
| 991 |
|
|
/**
|
| 992 |
|
|
* @todo Please document this function.
|
| 993 |
|
|
* @see http://drupal.org/node/1354
|
| 994 |
|
|
*/
|
| 995 |
|
|
function compare_image_sources($a, $b) {
|
| 996 |
|
|
if ($a->multilanguageText_L10n->text == $b->multilanguageText_L10n->text) {
|
| 997 |
|
|
return 0;
|
| 998 |
|
|
}
|
| 999 |
|
|
return ($a->multilanguageText_L10n->text < $b->multilanguageText_L10n->text) ? -1 : 1;
|
| 1000 |
|
|
}
|
| 1001 |
|
|
|
| 1002 |
|
|
/**
|
| 1003 |
|
|
* @todo Please document this function.
|
| 1004 |
|
|
* @see http://drupal.org/node/1354
|
| 1005 |
|
|
*/
|
| 1006 |
|
|
function theme_cdm_description_element_image_source($variables) {
|
| 1007 |
|
|
$image_sources = $variables['image_sources'];
|
| 1008 |
|
|
$asListElement = $variables['asListElement'];
|
| 1009 |
|
|
$out = '';
|
| 1010 |
|
|
$separator = ',';
|
| 1011 |
|
|
RenderHints::pushToRenderStack('descriptionElementImageSource');
|
| 1012 |
|
|
RenderHints::setFootnoteListKey(UUID_IMAGE_SOURCES);
|
| 1013 |
|
|
|
| 1014 |
|
|
// Sorting the image sources.
|
| 1015 |
|
|
usort($image_sources, "compare_image_sources");
|
| 1016 |
|
|
// Generate the footnotes.
|
| 1017 |
|
|
foreach ($image_sources as $image_source) {
|
| 1018 |
|
|
$footNoteKeys = cdm_annotations_as_footnotekeys($image_source);
|
| 1019 |
|
|
foreach ($image_source->sources as $source) {
|
| 1020 |
|
|
if (_is_original_source_type($source)) {
|
| 1021 |
f19f47fa
|
Andreas Kohlbecker
|
$fn_key = FootnoteManager::addNewFootnote(original_source_footnote_list_key(), theme('cdm_OriginalSource', array(
|
| 1022 |
1b04a204
|
Andreas Kohlbecker
|
'source' => $source,
|
| 1023 |
6657531f
|
Andreas Kohlbecker
|
'doLink' => FALSE,
|
| 1024 |
|
|
)));
|
| 1025 |
|
|
// Ensure uniqueness of the footnote keys.
|
| 1026 |
|
|
cdm_add_footnote_to_array($footNoteKeys, $fn_key);
|
| 1027 |
|
|
}
|
| 1028 |
|
|
}
|
| 1029 |
|
|
// Sort and render footnote keys.
|
| 1030 |
1f11e206
|
Andreas Kohlbecker
|
$footnote_key_list_str = '';
|
| 1031 |
6657531f
|
Andreas Kohlbecker
|
asort($footNoteKeys);
|
| 1032 |
|
|
foreach ($footNoteKeys as $footNoteKey) {
|
| 1033 |
1f11e206
|
Andreas Kohlbecker
|
$footnote_key_list_str .= theme('cdm_footnote_key', array('footnoteKey' => $footNoteKey, 'separator' => ($footnote_key_list_str ? $separator : '')));
|
| 1034 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 1035 |
|
|
// Return value!
|
| 1036 |
1f11e206
|
Andreas Kohlbecker
|
$out .= '<span class="descriptionElement descriptionElement-' . $image_source->uuid . '">' . $image_source->multilanguageText_L10n->text . $footnote_key_list_str . '; </span>';
|
| 1037 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 1038 |
|
|
|
| 1039 |
|
|
RenderHints::popFromRenderStack();
|
| 1040 |
|
|
return $out;
|
| 1041 |
|
|
}
|
| 1042 |
|
|
|
| 1043 |
|
|
/**
|
| 1044 |
44d445c0
|
Andreas Kohlbecker
|
* Composes the render array for a CDM Distribution element
|
| 1045 |
|
|
*
|
| 1046 |
|
|
* @param $descriptionElements
|
| 1047 |
|
|
* The CDM Distribution element
|
| 1048 |
|
|
* @param $enclosingTag
|
| 1049 |
|
|
* The html tag to be use for the enclosing element
|
| 1050 |
|
|
*
|
| 1051 |
|
|
* @return array
|
| 1052 |
|
|
* A Drupal render array
|
| 1053 |
|
|
*
|
| 1054 |
|
|
* @ingroup compose
|
| 1055 |
6657531f
|
Andreas Kohlbecker
|
*/
|
| 1056 |
44d445c0
|
Andreas Kohlbecker
|
function compose_cdm_descriptionElement_Distribution($descriptionElements, $enclosingTag = "span"){
|
| 1057 |
6657531f
|
Andreas Kohlbecker
|
|
| 1058 |
|
|
$out = '';
|
| 1059 |
|
|
RenderHints::pushToRenderStack('descriptionElementDistribution');
|
| 1060 |
|
|
RenderHints::setFootnoteListKey(UUID_DISTRIBUTION);
|
| 1061 |
|
|
|
| 1062 |
|
|
foreach ($descriptionElements as $descriptionElement) {
|
| 1063 |
1f11e206
|
Andreas Kohlbecker
|
$footnote_key_list_str = cdm_create_description_element_footnotes($descriptionElement);
|
| 1064 |
6657531f
|
Andreas Kohlbecker
|
|
| 1065 |
1f11e206
|
Andreas Kohlbecker
|
$out .= '<' . $enclosingTag . ' class="descriptionElement descriptionElement-' . $descriptionElement->uuid . '">'
|
| 1066 |
|
|
. $descriptionElement->area->representation_L10n . $footnote_key_list_str
|
| 1067 |
|
|
. ' </' . $enclosingTag . '>';
|
| 1068 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 1069 |
|
|
|
| 1070 |
|
|
RenderHints::popFromRenderStack();
|
| 1071 |
44d445c0
|
Andreas Kohlbecker
|
return markup_to_render_array($out);
|
| 1072 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 1073 |
|
|
|
| 1074 |
1f11e206
|
Andreas Kohlbecker
|
|
| 1075 |
6657531f
|
Andreas Kohlbecker
|
/**
|
| 1076 |
|
|
* Compare two different footnotes objects.
|
| 1077 |
|
|
*
|
| 1078 |
|
|
* The comparison is based on the footnote key. The one which is
|
| 1079 |
|
|
* displayed as footnote number.
|
| 1080 |
|
|
*
|
| 1081 |
|
|
* @param mixed $a
|
| 1082 |
|
|
* Footnote object $a.
|
| 1083 |
|
|
* @param mixed $b
|
| 1084 |
|
|
* Footnote object $b.
|
| 1085 |
|
|
*/
|
| 1086 |
|
|
function footnotes_key_compare($a, $b) {
|
| 1087 |
|
|
$res = 0;
|
| 1088 |
|
|
if (empty($a) || empty($b)) {
|
| 1089 |
|
|
return $res;
|
| 1090 |
|
|
}
|
| 1091 |
|
|
if ($a->keyStr < $b->keyStr) {
|
| 1092 |
|
|
$res = -1;
|
| 1093 |
|
|
}
|
| 1094 |
|
|
elseif ($a->keyStr > $b->keyStr) {
|
| 1095 |
|
|
$res = 1;
|
| 1096 |
|
|
}
|
| 1097 |
|
|
return $res;
|
| 1098 |
|
|
}
|
| 1099 |
|
|
|
| 1100 |
|
|
/**
|
| 1101 |
|
|
* @todo Please document this function.
|
| 1102 |
|
|
* @see http://drupal.org/node/1354
|
| 1103 |
|
|
*/
|
| 1104 |
|
|
function theme_cdm_description_ordered_distributions($variables) {
|
| 1105 |
bfb2b81a
|
Andreas Kohlbecker
|
|
| 1106 |
092744e1
|
Andreas Kohlbecker
|
$distribution_tree = $variables['distribution_tree'];
|
| 1107 |
bfb2b81a
|
Andreas Kohlbecker
|
|
| 1108 |
6657531f
|
Andreas Kohlbecker
|
// Returning NULL if there are no description elements.
|
| 1109 |
092744e1
|
Andreas Kohlbecker
|
if ($distribution_tree == null) {
|
| 1110 |
bfb2b81a
|
Andreas Kohlbecker
|
return NULL;
|
| 1111 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 1112 |
bfb2b81a
|
Andreas Kohlbecker
|
|
| 1113 |
6657531f
|
Andreas Kohlbecker
|
// Initialization of some variables.
|
| 1114 |
|
|
$out = '';
|
| 1115 |
|
|
$separator = ',';
|
| 1116 |
|
|
RenderHints::pushToRenderStack('descriptionElementDistribution');
|
| 1117 |
|
|
RenderHints::setFootnoteListKey(UUID_DISTRIBUTION);
|
| 1118 |
bfb2b81a
|
Andreas Kohlbecker
|
|
| 1119 |
092744e1
|
Andreas Kohlbecker
|
$ordered_areas = $distribution_tree;
|
| 1120 |
6657531f
|
Andreas Kohlbecker
|
if (isset($ordered_areas->rootElement->children)) {
|
| 1121 |
|
|
$ordered_areas = $ordered_areas->rootElement->children;
|
| 1122 |
|
|
}
|
| 1123 |
|
|
|
| 1124 |
|
|
// Printing the distributions.
|
| 1125 |
|
|
if (is_array($ordered_areas) && count($ordered_areas) > 0) {
|
| 1126 |
|
|
foreach ($ordered_areas as $element_level1) {
|
| 1127 |
|
|
// Level1.
|
| 1128 |
85b65ccc
|
Andreas Kohlbecker
|
$out .= '<dt>' . $element_level1->nodeId->representation_L10n . ':</dt> ';
|
| 1129 |
6657531f
|
Andreas Kohlbecker
|
$out .= '<dd>';
|
| 1130 |
|
|
|
| 1131 |
|
|
// Level3.
|
| 1132 |
|
|
foreach ($element_level1->children as $element_level3) {
|
| 1133 |
85b65ccc
|
Andreas Kohlbecker
|
$text_l3 = $element_level3->nodeId->representation_L10n;
|
| 1134 |
6657531f
|
Andreas Kohlbecker
|
$fnKeysLevel3Str = '';
|
| 1135 |
|
|
$fnKeysLevel3 = cdm_annotations_as_footnotekeys($element_level3->data);
|
| 1136 |
85b65ccc
|
Andreas Kohlbecker
|
if (isset($element_level3->data[0])) {
|
| 1137 |
|
|
foreach ($element_level3->data as $description_level3){
|
| 1138 |
|
|
foreach ($description_level3->sources as $source) {
|
| 1139 |
|
|
if (_is_original_source_type($source)) {
|
| 1140 |
bdd7d687
|
Andreas Kohlbecker
|
$fn_key3 = FootnoteManager::addNewFootnote(
|
| 1141 |
|
|
original_source_footnote_list_key(),
|
| 1142 |
|
|
theme('cdm_OriginalSource', array('source' => $source, 'doLink' => FALSE)
|
| 1143 |
|
|
));
|
| 1144 |
85b65ccc
|
Andreas Kohlbecker
|
cdm_add_footnote_to_array($fnKeysLevel3, $fn_key3);
|
| 1145 |
|
|
}
|
| 1146 |
|
|
}
|
| 1147 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 1148 |
|
|
}
|
| 1149 |
|
|
// Level4.
|
| 1150 |
|
|
$l4_regions = array();
|
| 1151 |
|
|
foreach ($element_level3->children as $element_level4) {
|
| 1152 |
85b65ccc
|
Andreas Kohlbecker
|
if (isset($element_level4->data[0])) {
|
| 1153 |
|
|
$text_l4 = $element_level4->nodeId->representation_L10n;
|
| 1154 |
|
|
$l4_regions[$element_level3->nodeId->representation_L10n] = array();
|
| 1155 |
6657531f
|
Andreas Kohlbecker
|
$fnKeysLevel4Str = '';
|
| 1156 |
85b65ccc
|
Andreas Kohlbecker
|
foreach($element_level4->data as $description_level4) {
|
| 1157 |
|
|
$fnKeysLevel4 = cdm_annotations_as_footnotekeys($description_level4);
|
| 1158 |
|
|
foreach ($description_level4->sources as $source) {
|
| 1159 |
|
|
if (_is_original_source_type($source)) {
|
| 1160 |
|
|
$fn_key4 = FootnoteManager::addNewFootnote(
|
| 1161 |
f19f47fa
|
Andreas Kohlbecker
|
original_source_footnote_list_key(),
|
| 1162 |
85b65ccc
|
Andreas Kohlbecker
|
theme('cdm_OriginalSource', array('source' => $source, 'doLink' => FALSE)));
|
| 1163 |
|
|
cdm_add_footnote_to_array($fnKeysLevel4, $fn_key4);
|
| 1164 |
|
|
}
|
| 1165 |
|
|
}
|
| 1166 |
|
|
usort($fnKeysLevel4, "footnotes_key_compare");
|
| 1167 |
|
|
if(!isset( $l4_regions[$text_l4])){
|
| 1168 |
|
|
$l4_regions[$text_l4] = $fnKeysLevel4;
|
| 1169 |
|
|
} else {
|
| 1170 |
|
|
$l4_regions[$text_l4] = array_merge($l4_regions[$text_l4], $fnKeysLevel4);
|
| 1171 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 1172 |
|
|
}
|
| 1173 |
|
|
}
|
| 1174 |
|
|
}// Level4.
|
| 1175 |
|
|
// Managing level3 and level4 for generating the right output.
|
| 1176 |
|
|
usort($fnKeysLevel3, "footnotes_key_compare");
|
| 1177 |
|
|
foreach ($fnKeysLevel3 as $key3) {
|
| 1178 |
|
|
foreach ($l4_regions as $key4 => $value4) {
|
| 1179 |
|
|
cdm_add_footnote_to_array($l4_regions[$key4], $key3);
|
| 1180 |
|
|
}
|
| 1181 |
|
|
}
|
| 1182 |
85b65ccc
|
Andreas Kohlbecker
|
if ($element_level3->numberOfChildren == 1 && $text_l3 == $element_level3->children[0]->nodeId->representation_L10n) {
|
| 1183 |
6657531f
|
Andreas Kohlbecker
|
// var_dump($element_level3->children[0]->data->area->representation_L10n);
|
| 1184 |
|
|
$fnStr = '';
|
| 1185 |
|
|
$region = array_pop($l4_regions);
|
| 1186 |
|
|
foreach ($region as $key) {
|
| 1187 |
|
|
$fnStr .= theme('cdm_footnote_key', array('footnoteKey' => $key, 'separator' => ($fnStr ? $separator : '')));
|
| 1188 |
|
|
}
|
| 1189 |
|
|
$out .= "$text_l3 $fnStr; ";
|
| 1190 |
|
|
// Removing whitespaces when &fnStr is empty.
|
| 1191 |
|
|
if (substr($out, -3) == ' ; ') {
|
| 1192 |
|
|
$out = substr($out, 0, -3) . '; ';
|
| 1193 |
|
|
}
|
| 1194 |
85b65ccc
|
Andreas Kohlbecker
|
} else {
|
| 1195 |
6657531f
|
Andreas Kohlbecker
|
$fnKeysLevel3Str = '';
|
| 1196 |
|
|
foreach ($fnKeysLevel3 as $key) {
|
| 1197 |
|
|
$fnKeysLevel3Str .= theme('cdm_footnote_key', array('footnoteKey' => $key, 'separator' => ($fnKeysLevel3Str ? $separator : '')));
|
| 1198 |
|
|
}
|
| 1199 |
|
|
$text_l4_aux = '';
|
| 1200 |
|
|
foreach ($l4_regions as $key => $value) {
|
| 1201 |
|
|
$fnKeysLevel4Str = '';
|
| 1202 |
|
|
if (is_array($l4_regions[$key])) {
|
| 1203 |
85b65ccc
|
Andreas Kohlbecker
|
foreach ($l4_regions[$key] as $fnkey) {
|
| 1204 |
6657531f
|
Andreas Kohlbecker
|
$fnKeysLevel4Str .= theme('cdm_footnote_key', array('footnoteKey' => $fnkey, 'separator' => ($fnKeysLevel4Str ? $separator : '')));
|
| 1205 |
|
|
}
|
| 1206 |
|
|
}
|
| 1207 |
|
|
// if ($key != $text_l3 || sizeof($l4_regions > 1)){
|
| 1208 |
|
|
if ($key != $text_l3) {
|
| 1209 |
|
|
$text_l4_aux .= "$key $fnKeysLevel4Str, ";
|
| 1210 |
|
|
}
|
| 1211 |
|
|
}
|
| 1212 |
|
|
$text_l4_aux = substr($text_l4_aux, 0, -2);
|
| 1213 |
|
|
|
| 1214 |
|
|
if (strlen($text_l4_aux) > 0) {
|
| 1215 |
|
|
$out .= "$text_l3 $fnKeysLevel3Str ($text_l4_aux); ";
|
| 1216 |
|
|
}
|
| 1217 |
|
|
else {
|
| 1218 |
|
|
$out .= "$text_l3 $fnKeysLevel3Str; ";
|
| 1219 |
|
|
}
|
| 1220 |
|
|
}
|
| 1221 |
|
|
}// Level3.
|
| 1222 |
|
|
$out = substr($out, 0, -2);
|
| 1223 |
|
|
$out .= '.</dd>';
|
| 1224 |
|
|
}// Level1.
|
| 1225 |
|
|
}
|
| 1226 |
|
|
RenderHints::popFromRenderStack();
|
| 1227 |
|
|
return $out;
|
| 1228 |
|
|
}
|
| 1229 |
1b04a204
|
Andreas Kohlbecker
|
|
| 1230 |
6657531f
|
Andreas Kohlbecker
|
/**
|
| 1231 |
|
|
* Returns a list of a specific type of IdentificationKeys.
|
| 1232 |
|
|
*
|
| 1233 |
|
|
* The list can be restricteded by a taxon.
|
| 1234 |
|
|
*
|
| 1235 |
|
|
* @param string $type
|
| 1236 |
|
|
* The simple name of the cdm class implementing the interface
|
| 1237 |
|
|
* IdentificationKey, valid values are:
|
| 1238 |
|
|
* PolytomousKey, MediaKey, MultiAccessKey.
|
| 1239 |
|
|
* @param string $taxonUuid
|
| 1240 |
|
|
* If given this parameter restrict the listed keys to those which have
|
| 1241 |
|
|
* the taxon identified be this uuid in scope.
|
| 1242 |
|
|
*
|
| 1243 |
|
|
* @return array
|
| 1244 |
|
|
* List with identification keys.
|
| 1245 |
|
|
*/
|
| 1246 |
|
|
function _list_IdentificationKeys($type, $taxonUuid = NULL, $pageSize = NULL, $pageNumber = NULL) {
|
| 1247 |
|
|
if (!$type) {
|
| 1248 |
|
|
drupal_set_message(t('Type parameter is missing'), 'error');
|
| 1249 |
|
|
return;
|
| 1250 |
|
|
}
|
| 1251 |
|
|
$cdm_ws_pasepath = NULL;
|
| 1252 |
|
|
switch ($type) {
|
| 1253 |
|
|
case "PolytomousKey":
|
| 1254 |
|
|
$cdm_ws_pasepath = CDM_WS_POLYTOMOUSKEY;
|
| 1255 |
|
|
break;
|
| 1256 |
|
|
|
| 1257 |
|
|
case "MediaKey":
|
| 1258 |
|
|
$cdm_ws_pasepath = CDM_WS_MEDIAKEY;
|
| 1259 |
|
|
break;
|
| 1260 |
|
|
|
| 1261 |
|
|
case "MultiAccessKey":
|
| 1262 |
|
|
$cdm_ws_pasepath = CDM_WS_MULTIACCESSKEY;
|
| 1263 |
|
|
break;
|
| 1264 |
|
|
|
| 1265 |
|
|
}
|
| 1266 |
|
|
|
| 1267 |
|
|
if (!$cdm_ws_pasepath) {
|
| 1268 |
|
|
drupal_set_message(t('Type parameter is not valid: ') . $type, 'error');
|
| 1269 |
|
|
}
|
| 1270 |
|
|
|
| 1271 |
|
|
$queryParameters = '';
|
| 1272 |
|
|
if (is_numeric($pageSize)) {
|
| 1273 |
|
|
$queryParameters = "pageSize=" . $pageSize;
|
| 1274 |
|
|
}
|
| 1275 |
|
|
else {
|
| 1276 |
|
|
$queryParameters = "pageSize=0";
|
| 1277 |
|
|
}
|
| 1278 |
|
|
|
| 1279 |
|
|
if (is_numeric($pageNumber)) {
|
| 1280 |
|
|
$queryParameters = "pageNumber=" . $pageNumber;
|
| 1281 |
|
|
}
|
| 1282 |
|
|
else {
|
| 1283 |
|
|
$queryParameters = "pageNumber=0";
|
| 1284 |
|
|
}
|
| 1285 |
|
|
$queryParameters = NULL;
|
| 1286 |
|
|
if ($taxonUuid) {
|
| 1287 |
|
|
$queryParameters = "findByTaxonomicScope=$taxonUuid";
|
| 1288 |
|
|
}
|
| 1289 |
|
|
$pager = cdm_ws_get($cdm_ws_pasepath, NULL, $queryParameters);
|
| 1290 |
|
|
|
| 1291 |
|
|
if (!$pager || $pager->count == 0) {
|
| 1292 |
|
|
return array();
|
| 1293 |
|
|
}
|
| 1294 |
|
|
return $pager->records;
|
| 1295 |
|
|
}
|
| 1296 |
|
|
|
| 1297 |
|
|
/**
|
| 1298 |
|
|
* @todo Please document this function.
|
| 1299 |
|
|
* @see http://drupal.org/node/1354
|
| 1300 |
|
|
*/
|
| 1301 |
|
|
function theme_cdm_IdentificationKey($variables) {
|
| 1302 |
|
|
$out = '';
|
| 1303 |
|
|
$identificationKey = $variables['identificationKey'];
|
| 1304 |
|
|
$doLinkToKeyPage = $variables['doLinkToKeyPage'];
|
| 1305 |
|
|
$showIdentificationKeyTitle = $variables['showIdentificationKeyTitle'];
|
| 1306 |
|
|
$parentRenderPath = RenderHints::getRenderPath();
|
| 1307 |
|
|
RenderHints::pushToRenderStack("IdentificationKey");
|
| 1308 |
|
|
|
| 1309 |
|
|
if ($showIdentificationKeyTitle) {
|
| 1310 |
|
|
if ($doLinkToKeyPage) {
|
| 1311 |
|
|
$out = l($identificationKey->titleCache, path_to_key($identificationKey->class, $identificationKey->uuid));
|
| 1312 |
|
|
}
|
| 1313 |
|
|
else {
|
| 1314 |
|
|
$out = $identificationKey->titleCache;
|
| 1315 |
|
|
}
|
| 1316 |
|
|
}
|
| 1317 |
|
|
if (isset($identificationKey->sources) && is_array($identificationKey->sources)) {
|
| 1318 |
c2486c6b
|
Andreas Kohlbecker
|
// order and display sources.
|
| 1319 |
|
|
$sources = oder_sources($identificationKey->sources, TRUE);
|
| 1320 |
29809fe3
|
Andreas Kohlbecker
|
$out .= '<div class="sources">';
|
| 1321 |
c2486c6b
|
Andreas Kohlbecker
|
$out .= implode('', $sources);
|
| 1322 |
6657531f
|
Andreas Kohlbecker
|
$out .= '</div>';
|
| 1323 |
|
|
}
|
| 1324 |
|
|
// Display annotations.
|
| 1325 |
|
|
$out .= theme('cdm_annotations', array('annotations' => cdm_ws_getAnnotationsFor($identificationKey), 'enclosingTag' => 'div'));
|
| 1326 |
|
|
RenderHints::popFromRenderStack();
|
| 1327 |
|
|
return $out;
|
| 1328 |
|
|
}
|
| 1329 |
|
|
|
| 1330 |
|
|
/**
|
| 1331 |
|
|
* @todo Please document this function.
|
| 1332 |
|
|
* @see http://drupal.org/node/1354
|
| 1333 |
|
|
*/
|
| 1334 |
|
|
function theme_cdm_polytomousKey($variables) {
|
| 1335 |
|
|
$polytomousKey = $variables['polytomousKey'];
|
| 1336 |
|
|
|
| 1337 |
|
|
// TODO settings needed.
|
| 1338 |
|
|
// @see http://en.wikipedia.org/wiki/Single_access_key#Presentation_styles
|
| 1339 |
|
|
// @see http://dev.e-taxonomy.eu/trac/ticket/2152
|
| 1340 |
|
|
$keyStyle = "linkedStyle";
|
| 1341 |
|
|
|
| 1342 |
|
|
RenderHints::pushToRenderStack("polytomousKey");
|
| 1343 |
|
|
// Key nodes in linked style.
|
| 1344 |
|
|
$out = '<table class="polytomousKey polytomousKey_' . $keyStyle . '">';
|
| 1345 |
|
|
$out .= theme('cdm_polytomousKey_' . $keyStyle . '_subgraph', array('polytomousKeyNode' => $polytomousKey->root));
|
| 1346 |
|
|
$out .= '</table>';
|
| 1347 |
|
|
RenderHints::popFromRenderStack();
|
| 1348 |
|
|
return $out;
|
| 1349 |
|
|
}
|
| 1350 |
|
|
|
| 1351 |
|
|
/**
|
| 1352 |
|
|
* @todo Please document this function.
|
| 1353 |
|
|
* @see http://drupal.org/node/1354
|
| 1354 |
|
|
*/
|
| 1355 |
|
|
function theme_cdm_polytomousKey_linkedStyle_subgraph($variables) {
|
| 1356 |
|
|
$polytomousKeyNode = $variables['polytomousKeyNode'];
|
| 1357 |
|
|
static $statementCountCharacter = '\'';
|
| 1358 |
|
|
$out = "";
|
| 1359 |
|
|
|
| 1360 |
|
|
if (is_array($polytomousKeyNode->children)) {
|
| 1361 |
|
|
$childIndex = 0;
|
| 1362 |
|
|
|
| 1363 |
|
|
// Render edges of the current node.
|
| 1364 |
|
|
foreach ($polytomousKeyNode->children as &$child) {
|
| 1365 |
|
|
|
| 1366 |
|
|
if (!isset($child->statement) && isset($child->taxon->uuid)) {
|
| 1367 |
|
|
// Skip node with empty statements (see below for explanation: "Special
|
| 1368 |
|
|
// case").
|
| 1369 |
|
|
// this skipping here happens always in the next deeper level of iteration
|
| 1370 |
|
|
// the check below is node on the level above
|
| 1371 |
|
|
continue;
|
| 1372 |
|
|
}
|
| 1373 |
|
|
|
| 1374 |
|
|
/*
|
| 1375 |
|
|
* Special case: Child nodes with empty statements but taxa as leaf are to
|
| 1376 |
|
|
* treated as if all those taxa where direct children of the source node.
|
| 1377 |
|
|
*/
|
| 1378 |
|
|
$islinkToManyTaxa = !isset($child->children[0]->statement) && isset($child->children[0]->taxon->uuid);
|
| 1379 |
|
|
$islinkToTaxon = isset($child->taxon->uuid);
|
| 1380 |
|
|
$islinkToSubKey = isset($child->subkey->uuid);
|
| 1381 |
|
|
$islinkToOtherNode = isset($child->otherNode);
|
| 1382 |
|
|
// Either NULL or 0.
|
| 1383 |
|
|
$islinkToNode = $child->nodeNumber && !$islinkToManyTaxa && !$islinkToOtherNode;
|
| 1384 |
32dccd76
|
Andreas Kohlbecker
|
$hasQuestion = !empty($polytomousKeyNode->question->label_l10n);
|
| 1385 |
6657531f
|
Andreas Kohlbecker
|
$hasFeature = isset($polytomousKeyNode->feature);
|
| 1386 |
|
|
|
| 1387 |
|
|
// $indentEdge = $hasQuestion && $childIndex > 0;
|
| 1388 |
|
|
// Question.
|
| 1389 |
|
|
if ($hasQuestion && $childIndex == 0) {
|
| 1390 |
|
|
// Place question, as extra table row.
|
| 1391 |
|
|
$out .= '<tr class="question new_section">';
|
| 1392 |
|
|
$out .= '<td class="nodeNumber">' . uuid_anchor($polytomousKeyNode->uuid, $polytomousKeyNode->nodeNumber) . "</td>";
|
| 1393 |
|
|
$out .= '<td class="question">' . $polytomousKeyNode->question->label_l10n . '</td>';
|
| 1394 |
|
|
$out .= '</tr>';
|
| 1395 |
|
|
}
|
| 1396 |
|
|
|
| 1397 |
|
|
$out .= '<tr class="childCount_' . $childIndex . (!$hasQuestion && $childIndex == 0 ? ' new_section' : '') . '">';
|
| 1398 |
|
|
|
| 1399 |
|
|
if ($hasQuestion) {
|
| 1400 |
|
|
$out .= '<td class="nodeNumber"></td>';
|
| 1401 |
|
|
}
|
| 1402 |
|
|
else {
|
| 1403 |
|
|
$out .= '<td class="nodeNumber">' . uuid_anchor($polytomousKeyNode->uuid, $polytomousKeyNode->nodeNumber . str_pad("", $childIndex, $statementCountCharacter)) . "</td>";
|
| 1404 |
|
|
}
|
| 1405 |
|
|
|
| 1406 |
|
|
$out .= '<td ' . RenderHints::getHtmlElementID($child) . ' class="edge' . ($hasQuestion ? ' edge-indent' : '') . '">';
|
| 1407 |
|
|
|
| 1408 |
|
|
// Feature.
|
| 1409 |
|
|
if ($hasFeature) {
|
| 1410 |
|
|
$out .= $polytomousKeyNode->feature->representation_L10n . ": ";
|
| 1411 |
|
|
}
|
| 1412 |
|
|
|
| 1413 |
|
|
// Statement.
|
| 1414 |
|
|
$out .= $child->statement->label_l10n;
|
| 1415 |
|
|
|
| 1416 |
|
|
// --- Links to nodes taxa and subkeys.
|
| 1417 |
|
|
$out .= '<div class="nodeLink">';
|
| 1418 |
|
|
|
| 1419 |
|
|
// Link to a PolytomousKeyNode.
|
| 1420 |
|
|
if ($islinkToNode) {
|
| 1421 |
|
|
$out .= '<div class="nodeLinkToNode">';
|
| 1422 |
1a2294c8
|
Andreas Kohlbecker
|
if (isset($child->modifyingText)) {
|
| 1423 |
6657531f
|
Andreas Kohlbecker
|
$out .= theme('cdm_poytomousKeyNode_modifyingText', array('modifyingText' => $child->modifyingText));
|
| 1424 |
|
|
}
|
| 1425 |
|
|
$out .= l($child->nodeNumber, request_path(), array(
|
| 1426 |
|
|
'attributes' => NULL,
|
| 1427 |
|
|
'query' => NULL,
|
| 1428 |
|
|
'fragment' => $child->uuid,
|
| 1429 |
|
|
)) . '</div>';
|
| 1430 |
|
|
}
|
| 1431 |
|
|
|
| 1432 |
|
|
// Link to a PolytomousKeyNode.
|
| 1433 |
|
|
if ($islinkToOtherNode) {
|
| 1434 |
|
|
$out .= '<div class="nodeLinkToOtherNode">';
|
| 1435 |
1a2294c8
|
Andreas Kohlbecker
|
if (isset($child->modifyingText)) {
|
| 1436 |
6657531f
|
Andreas Kohlbecker
|
$out .= theme('cdm_poytomousKeyNode_modifyingText', array('modifyingText' => $child->modifyingText));
|
| 1437 |
|
|
}
|
| 1438 |
|
|
$out .= l($child->otherNode->nodeNumber, $_REQUEST["q"], array(
|
| 1439 |
|
|
'attributes' => NULL,
|
| 1440 |
|
|
'query' => NULL,
|
| 1441 |
|
|
'fragment' => $child->otherNode->uuid,
|
| 1442 |
|
|
)) . '</div>';
|
| 1443 |
|
|
}
|
| 1444 |
|
|
|
| 1445 |
|
|
// Link to one or many taxa.
|
| 1446 |
|
|
if ($islinkToTaxon || $islinkToManyTaxa) {
|
| 1447 |
|
|
|
| 1448 |
|
|
if ($islinkToManyTaxa) {
|
| 1449 |
|
|
$taxonChildren = $child->children;
|
| 1450 |
|
|
}
|
| 1451 |
|
|
else {
|
| 1452 |
|
|
$taxonChildren = array(
|
| 1453 |
|
|
$child,
|
| 1454 |
|
|
);
|
| 1455 |
|
|
}
|
| 1456 |
|
|
|
| 1457 |
|
|
foreach ($taxonChildren as $taxonChild) {
|
| 1458 |
|
|
// TODO many taxa $child->children->taxon.
|
| 1459 |
|
|
$out .= '<div class="nodeLinkToTaxon">';
|
| 1460 |
1a2294c8
|
Andreas Kohlbecker
|
if (isset($taxonChild->modifyingText)) {
|
| 1461 |
6657531f
|
Andreas Kohlbecker
|
$out .= theme('cdm_poytomousKeyNode_modifyingText', array('modifyingText' => $taxonChild->modifyingText));
|
| 1462 |
|
|
}
|
| 1463 |
|
|
$out .= theme("cdm_taxonName", array('taxonName' => $taxonChild->taxon->name, 'nameLink' => url(path_to_taxon($taxonChild->taxon->uuid))));
|
| 1464 |
|
|
$out .= '</div>';
|
| 1465 |
|
|
}
|
| 1466 |
|
|
|
| 1467 |
|
|
// Link to a subkey.
|
| 1468 |
|
|
if ($islinkToSubKey) {
|
| 1469 |
|
|
$out .= '<div class="nodeLinkToSubkey">' . theme('cdm_IdentificationKey', array('identificationKey' => $child->subkey)) . '</div>';
|
| 1470 |
|
|
}
|
| 1471 |
|
|
}
|
| 1472 |
|
|
|
| 1473 |
|
|
$out .= '</div>'; // End node link.
|
| 1474 |
|
|
$out .= '</td>'; // End edge.
|
| 1475 |
|
|
$out .= '</tr>';
|
| 1476 |
|
|
|
| 1477 |
|
|
$childIndex++;
|
| 1478 |
|
|
}
|
| 1479 |
|
|
|
| 1480 |
|
|
// Recurse into child nodes.
|
| 1481 |
|
|
foreach ($polytomousKeyNode->children as &$child) {
|
| 1482 |
|
|
$out .= theme('cdm_polytomousKey_linkedStyle_subgraph', array('polytomousKeyNode' => $child));
|
| 1483 |
|
|
}
|
| 1484 |
|
|
}
|
| 1485 |
|
|
|
| 1486 |
|
|
return $out;
|
| 1487 |
|
|
}
|
| 1488 |
|
|
|
| 1489 |
|
|
/**
|
| 1490 |
|
|
* @todo Please document this function.
|
| 1491 |
|
|
* @see http://drupal.org/node/1354
|
| 1492 |
|
|
*/
|
| 1493 |
|
|
function theme_cdm_poytomousKeyNode_modifyingText($variables) {
|
| 1494 |
|
|
$out = '';
|
| 1495 |
|
|
$modifyingText = $variables['modifyingText'];
|
| 1496 |
|
|
if (is_object($modifyingText)) {
|
| 1497 |
|
|
$i = 0;
|
| 1498 |
|
|
foreach (get_object_vars($modifyingText) as $lang => $languageString) {
|
| 1499 |
|
|
$out .= ($i++ > 0 ? ', ' : '') . '<span class="modifyingText">' . $languageString->text . '</span> ';
|
| 1500 |
|
|
}
|
| 1501 |
|
|
}
|
| 1502 |
|
|
return $out;
|
| 1503 |
|
|
}
|
| 1504 |
|
|
|
| 1505 |
|
|
/**
|
| 1506 |
|
|
* Returns HTML for a list of a specific type of IdentificationKeys.
|
| 1507 |
|
|
*
|
| 1508 |
|
|
* The list can be restricteded by a taxon.
|
| 1509 |
|
|
*
|
| 1510 |
|
|
* @param array $variables
|
| 1511 |
|
|
* An associative array containing:
|
| 1512 |
|
|
* - type: The simple name of the cdm class implementing the interface
|
| 1513 |
|
|
* IdentificationKey, valid values are:
|
| 1514 |
|
|
* PolytomousKey, MediaKey, MultiAccessKey
|
| 1515 |
|
|
* - taxonUuid: If given, this parameter restrict the listed keys to those
|
| 1516 |
|
|
* which have the taxon identified be this uuid in scope.
|
| 1517 |
|
|
*
|
| 1518 |
|
|
* @ingroup themeable
|
| 1519 |
|
|
*/
|
| 1520 |
|
|
function theme_cdm_list_IdentificationKeys($variables) {
|
| 1521 |
|
|
$type = $variables['type'];
|
| 1522 |
|
|
$taxonUuid = $variables['taxonUuid'];
|
| 1523 |
|
|
$keyList = _list_IdentificationKeys($type, $taxonUuid);
|
| 1524 |
|
|
if (!$keyList || count($keyList) == 0) {
|
| 1525 |
|
|
return;
|
| 1526 |
|
|
}
|
| 1527 |
|
|
|
| 1528 |
|
|
RenderHints::pushToRenderStack('list_IdentificationKeys');
|
| 1529 |
|
|
$out = '<ul>';
|
| 1530 |
|
|
foreach ($keyList as $key) {
|
| 1531 |
|
|
$out .= '<li>';
|
| 1532 |
|
|
$out .= theme('cdm_IdentificationKey', array('identificationKey' => $key));
|
| 1533 |
|
|
$out .= '</li>';
|
| 1534 |
|
|
}
|
| 1535 |
|
|
$out .= '</ul>';
|
| 1536 |
|
|
$out .= theme("cdm_annotation_footnotes", array('footnoteListKey' => RenderHints::getRenderPath()));
|
| 1537 |
|
|
RenderHints::popFromRenderStack();
|
| 1538 |
|
|
|
| 1539 |
|
|
return $out;
|
| 1540 |
|
|
}
|
| 1541 |
|
|
|
| 1542 |
|
|
/**
|
| 1543 |
|
|
* @todo Please document this function.
|
| 1544 |
|
|
* @see http://drupal.org/node/1354
|
| 1545 |
|
|
*/
|
| 1546 |
|
|
function theme_cdm_block_IdentificationKeys($variables) {
|
| 1547 |
|
|
$taxonUuid = $variables['taxonUuid'];
|
| 1548 |
|
|
static $types = array(
|
| 1549 |
|
|
"PolytomousKey" => "Polytomous",
|
| 1550 |
|
|
"MediaKey" => "Media",
|
| 1551 |
|
|
"MultiAccessKey" => "Multiaccess",
|
| 1552 |
|
|
);
|
| 1553 |
|
|
RenderHints::pushToRenderStack('block_IdentificationKeys');
|
| 1554 |
|
|
$out = '';
|
| 1555 |
|
|
foreach ($types as $type => $label) {
|
| 1556 |
|
|
$keylist = theme('cdm_list_IdentificationKeys', array('type' => $type, 'taxonUuid' => $taxonUuid));
|
| 1557 |
|
|
if (!$keylist) {
|
| 1558 |
|
|
continue;
|
| 1559 |
|
|
}
|
| 1560 |
|
|
$out .= '<div class="' . $type . '">';
|
| 1561 |
|
|
$out .= '<h3>' . t($label) . "</h3>";
|
| 1562 |
|
|
$out .= $keylist;
|
| 1563 |
|
|
$out .= '</div>';
|
| 1564 |
|
|
}
|
| 1565 |
|
|
RenderHints::popFromRenderStack();
|
| 1566 |
|
|
return $out;
|
| 1567 |
|
|
}
|
| 1568 |
|
|
|
| 1569 |
|
|
/**
|
| 1570 |
ae0a5060
|
Andreas Kohlbecker
|
* This theming function formats the use description and use record list for
|
| 1571 |
|
|
* these descriptions.
|
| 1572 |
|
|
*
|
| 1573 |
6657531f
|
Andreas Kohlbecker
|
* @see http://drupal.org/node/1354
|
| 1574 |
|
|
*/
|
| 1575 |
|
|
function theme_cdm_UseDescription($variables) {
|
| 1576 |
|
|
$descriptions = $variables['description'];
|
| 1577 |
|
|
$taxonUuid = $variables['taxonUuid'];
|
| 1578 |
|
|
$out = '<div id="content"><ul id="Description" class ="description">';
|
| 1579 |
|
|
if ($descriptions == NULL) {
|
| 1580 |
|
|
return;
|
| 1581 |
|
|
}
|
| 1582 |
|
|
$descriptionSynonyms = '';
|
| 1583 |
|
|
$descriptionOut = '';
|
| 1584 |
|
|
$synonymOut = '';
|
| 1585 |
|
|
$currentTaxon = cdm_ws_get(CDM_WS_PORTAL_TAXON, $taxonUuid);
|
| 1586 |
|
|
|
| 1587 |
|
|
foreach ($descriptions as $description) {
|
| 1588 |
3daa3743
|
Andreas Kohlbecker
|
$useSummary = '';
|
| 1589 |
6657531f
|
Andreas Kohlbecker
|
foreach ($description->elements as $element) {
|
| 1590 |
|
|
|
| 1591 |
3a5d0703
|
Andreas Kohlbecker
|
if ($element->feature->uuid == UUID_USE && !(strlen($useSummary) > 0) && isset($element->multilanguageText_L10n)) {
|
| 1592 |
6657531f
|
Andreas Kohlbecker
|
$useSummary = $element->multilanguageText_L10n->text;
|
| 1593 |
|
|
}
|
| 1594 |
|
|
}
|
| 1595 |
3445600f
|
Andreas Kohlbecker
|
// uses will be ordered by source
|
| 1596 |
6657531f
|
Andreas Kohlbecker
|
foreach ($description->sources as $source) {
|
| 1597 |
3445600f
|
Andreas Kohlbecker
|
$is_about_current_taxon = FALSE;
|
| 1598 |
6657531f
|
Andreas Kohlbecker
|
$originalTaxonUsedInSource = NULL;
|
| 1599 |
|
|
$originalTaxonPager = NULL;
|
| 1600 |
|
|
if ($source->originalNameString) {
|
| 1601 |
|
|
$request_params = array();
|
| 1602 |
|
|
$request_params['query'] = $source->originalNameString;
|
| 1603 |
|
|
$request_params['matchMode'] = "EXACT";
|
| 1604 |
|
|
$originalTaxonPager = cdm_ws_get(CDM_WS_PORTAL_NAME_FINDBYNAME, NULL, queryString($request_params));
|
| 1605 |
|
|
if ($originalTaxonPager->count > 0) {
|
| 1606 |
|
|
$originalTaxonUsedInSource = $originalTaxonPager->records[0];
|
| 1607 |
|
|
}
|
| 1608 |
|
|
else {
|
| 1609 |
|
|
$originalTaxonUsedInSource = $currentTaxon->name;
|
| 1610 |
|
|
}
|
| 1611 |
|
|
}
|
| 1612 |
|
|
else {
|
| 1613 |
|
|
$originalTaxonUsedInSource = $currentTaxon->name;
|
| 1614 |
|
|
}
|
| 1615 |
|
|
|
| 1616 |
3445600f
|
Andreas Kohlbecker
|
$is_about_current_taxon = $currentTaxon->name->uuid == $originalTaxonUsedInSource->uuid;
|
| 1617 |
6657531f
|
Andreas Kohlbecker
|
|
| 1618 |
3445600f
|
Andreas Kohlbecker
|
if (!$is_about_current_taxon) {
|
| 1619 |
6657531f
|
Andreas Kohlbecker
|
$descriptionOut .= '<li class="descriptionText DescriptionElement">';
|
| 1620 |
|
|
$name_used_in_source_link_to_show_use = l($source->originalNameString, path_to_name($originalTaxonUsedInSource->uuid), array(
|
| 1621 |
|
|
'absolute' => TRUE,
|
| 1622 |
|
|
'html' => TRUE,
|
| 1623 |
|
|
));
|
| 1624 |
|
|
$descriptionOut .= $name_used_in_source_link_to_show_use . ': ';
|
| 1625 |
|
|
$descriptionOut .= $useSummary;
|
| 1626 |
|
|
foreach ($description->sources as $source) {
|
| 1627 |
1b04a204
|
Andreas Kohlbecker
|
$descriptionOut .= " (" . theme('cdm_OriginalSource', array('source' => $source, 'doLink' => TRUE)) . ")";
|
| 1628 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 1629 |
|
|
$hasUseRecords = FALSE;
|
| 1630 |
|
|
$descriptionUseRecordOut = '<div id=useRecords><table><th>Use Category</th><th>Use Sub Category</th><th>Plant Part</th><th>Human Group</th><th>Ethnic Group</th><th>Country</th>';
|
| 1631 |
|
|
foreach ($description->elements as $descriptionElement) {
|
| 1632 |
|
|
if ($descriptionElement->feature->uuid == UUID_USE_RECORD) {
|
| 1633 |
|
|
$hasUseRecords = TRUE;
|
| 1634 |
3445600f
|
Andreas Kohlbecker
|
// FIXME localization hardcoded to English
|
| 1635 |
3a5d0703
|
Andreas Kohlbecker
|
$useRecordTags = explode(';', $descriptionElement->modifyingText_l10n);
|
| 1636 |
6657531f
|
Andreas Kohlbecker
|
$descriptionUseRecordOut .= '<tr>';
|
| 1637 |
|
|
$descriptionUseRecordOut .= '<td>' . $useRecordTags[0] . '</td>' . '<td>' . $useRecordTags[1] . '</td>' . '<td>' . $useRecordTags[3] . '</td>' . '<td>' . $useRecordTags[4] . '</td>' . '<td>' . $useRecordTags[5] . '</td>' . '<td>' . $useRecordTags[2] . '</td>';
|
| 1638 |
|
|
$descriptionUseRecordOut .= '</tr>';
|
| 1639 |
|
|
}
|
| 1640 |
|
|
}
|
| 1641 |
|
|
$descriptionUseRecordOut .= '</table></div>';
|
| 1642 |
|
|
if ($hasUseRecords) {
|
| 1643 |
|
|
$descriptionOut .= $descriptionUseRecordOut . '</li>';
|
| 1644 |
|
|
}
|
| 1645 |
|
|
}
|
| 1646 |
|
|
else {
|
| 1647 |
3445600f
|
Andreas Kohlbecker
|
// TODO +/- duplicate of above, unify this code
|
| 1648 |
6657531f
|
Andreas Kohlbecker
|
$synonymOut .= '<li class="descriptionText DescriptionElement">';
|
| 1649 |
|
|
$name_used_in_source_link_to_show_use = l($source->originalNameString, path_to_name($originalTaxonUsedInSource->uuid), array(
|
| 1650 |
|
|
'absolute' => TRUE,
|
| 1651 |
|
|
'html' => TRUE,
|
| 1652 |
|
|
));
|
| 1653 |
|
|
|
| 1654 |
|
|
$synonymOut .= $name_used_in_source_link_to_show_use . ': ';
|
| 1655 |
|
|
$synonymOut .= $useSummary;
|
| 1656 |
|
|
foreach ($description->sources as $source) {
|
| 1657 |
1b04a204
|
Andreas Kohlbecker
|
$synonymOut .= " (" . theme('cdm_OriginalSource', array('source' => $source, 'doLink' => TRUE)) . ")";
|
| 1658 |
6657531f
|
Andreas Kohlbecker
|
}
|
| 1659 |
|
|
|
| 1660 |
|
|
$hasUseRecords = FALSE;
|
| 1661 |
|
|
$useRecordTableOut = '<div id=useRecords><table><th>Use Category</th><th>Use Sub Category</th><th>Plant Part</th><th>Human Group</th><th>Ethnic Group</th><th>Country</th>';
|
| 1662 |
|
|
foreach ($description->elements as $descriptionElement) {
|
| 1663 |
|
|
if ($descriptionElement->feature->uuid == UUID_USE_RECORD) {
|
| 1664 |
|
|
$hasUseRecords = TRUE;
|
| 1665 |
3a5d0703
|
Andreas Kohlbecker
|
$useRecordTags = explode(';', $descriptionElement->modifyingText_l10n);
|
| 1666 |
6657531f
|
Andreas Kohlbecker
|
$useRecordTableOut .= '<tr>';
|
| 1667 |
|
|
$useRecordTableOut .= '<td>' . $useRecordTags[0] . '</td>' . '<td>' . $useRecordTags[1] . '</td>' . '<td>' . $useRecordTags[3] . '</td>' . '<td>' . $useRecordTags[4] . '</td>' . '<td>' . $useRecordTags[5] . '</td>' . '<td>' . $useRecordTags[2] . '</td>';
|
| 1668 |
|
|
$useRecordTableOut .= '</tr>';
|
| 1669 |
|
|
}
|
| 1670 |
|
|
}
|
| 1671 |
|
|
$useRecordTableOut .= '</table></div>';
|
| 1672 |
|
|
if ($hasUseRecords) {
|
| 1673 |
|
|
$synonymOut .= $useRecordTableOut . '</li>';
|
| 1674 |
|
|
}
|
| 1675 |
|
|
}
|
| 1676 |
|
|
|
| 1677 |
|
|
// }
|
| 1678 |
|
|
}
|
| 1679 |
|
|
}
|
| 1680 |
|
|
$out .= $descriptionOut . $synonymOut;
|
| 1681 |
|
|
$out .= "</ul></div>";
|
| 1682 |
|
|
return $out;
|
| 1683 |
|
|
}
|
| 1684 |
|
|
|
| 1685 |
db074558
|
Andreas Kohlbecker
|
|
| 1686 |
6657531f
|
Andreas Kohlbecker
|
/**
|
| 1687 |
db074558
|
Andreas Kohlbecker
|
* The theming function for a block of Uses Descriptions for a given taxon.
|
| 1688 |
|
|
*
|
| 1689 |
|
|
* The Uses block has been removed from the code but the according theme function
|
| 1690 |
|
|
* is kept for compatibility reasons with existing code regarding palmweb.
|
| 1691 |
|
|
*
|
| 1692 |
6657531f
|
Andreas Kohlbecker
|
*/
|
| 1693 |
|
|
function theme_cdm_block_Uses($variables) {
|
| 1694 |
|
|
$taxonUuid = $variables['taxonUuid'];
|
| 1695 |
|
|
RenderHints::pushToRenderStack('block_Uses');
|
| 1696 |
|
|
|
| 1697 |
|
|
if ($taxonUuid == NULL) {
|
| 1698 |
|
|
return;
|
| 1699 |
|
|
}
|
| 1700 |
|
|
$out = '';
|
| 1701 |
|
|
$markerTypes = array();
|
| 1702 |
|
|
$markerTypes['markerTypes'] = UUID_MARKERTYPE_USE;
|
| 1703 |
|
|
$useDescriptions = cdm_ws_get(CDM_WS_PORTAL_TAXON_DESCRIPTIONS, $taxonUuid, queryString($markerTypes));
|
| 1704 |
|
|
if (!empty($useDescriptions)) {
|
| 1705 |
3445600f
|
Andreas Kohlbecker
|
// FIXME use theme_block instaed of hardcoding the block html here !!!!
|
| 1706 |
6657531f
|
Andreas Kohlbecker
|
$out .= '<div id="block-cdm_dataportal-feature-description" class="clear-block block block-cdm_dataportal-feature"><H2><a name="userecords"> </a> Uses </H2>';
|
| 1707 |
|
|
$formatUseDescriptions = theme('cdm_UseDescription', array('description' => $useDescriptions, 'taxonUuid' => $taxonUuid));
|
| 1708 |
|
|
|
| 1709 |
|
|
$out .= $formatUseDescriptions;
|
| 1710 |
|
|
$out .= "</div>";
|
| 1711 |
|
|
}
|
| 1712 |
|
|
|
| 1713 |
|
|
return $out;
|
| 1714 |
|
|
}
|