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<?php
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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See http://www.mozilla.org/MPL/MPL-1.1.html for the full license terms.
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*/
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function _add_js_openlayers_map(){
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/OpenLayers/OpenLayers.js', 'core', 'header');
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/openlayers_map.js');
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$gmap_api_key = variable_get('gmap_api_key', 'ABQIAAAAFho6eHAcUOTHLmH9IYHAeBRi_j0U6kJrkFvY4-OX2XYmEAa76BTsyMmEq-tn6nFNtD2UdEGvfhvoCQ');
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drupal_set_html_head('<script src=http://maps.google.com/maps?file=api&v=2&sensor=false&key='.$gmap_api_key.'" type="text/javascript"></script>');
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drupal_set_html_head('<script src="http://dev.virtualearth.net/mapcontrol/mapcontrol.ashx?v=6.1" type="text/javascript"></script>');
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drupal_add_js("
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if (Drupal.jsEnabled) {
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$(document).ready(function() {
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$('#openlayers_map').cdm_openlayers_map('"
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.variable_get('cdm_dataportal_geoservice_access_point', false)."', {
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legendPosition: 3,
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displayWidth: '" . variable_get('cdm_dataportal_geoservice_display_width', false) . "',
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boundingBox: '" . variable_get('cdm_dataportal_geoservice_bounding_box', false) . "',
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distributionOpacity: '" . variable_get('cdm_dataportal_geoservice_distributionOpacity', '0.5') . "',
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legendOpacity: '" . variable_get('cdm_dataportal_geoservice_legendOpacity', '0.5') . "',
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showLayerSwitcher: '" . variable_get('cdm_dataportal_geoservice_showLayerSwitcher', true) . "'
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});
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});
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}", 'inline');
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}
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function theme_cdm_feature_nodesTOC($featureNodes){
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$out .= '<ul>';
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foreach($featureNodes as $node){
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// process $descriptionElements with content only
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if(is_array($node->descriptionElements) && count($node->descriptionElements) > 0 || count($node->children) > 0){
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$featureRepresentation = isset($node->feature->representation_L10n) ? $node->feature->representation_L10n : 'Feature';
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// HACK to implement images for taxa, should be removed
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if($node->feature->uuid != UUID_IMAGE){
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$out .= '<li>'.l(t(theme('cdm_feature_name', $featureRepresentation)), $_GET['q'], array("class"=>"toc"), NULL, generalizeString($featureRepresentation)).'</li>';
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}
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}
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}
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$out .= '</ul>';
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return $out;
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}
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function theme_cdm_feature_name($feature_name){
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//TODO replace by using translations ?
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switch($feature_name){
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default: return t(ucfirst($feature_name));
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}
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}
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function theme_cdm_featureTrees($mergedTrees, $taxon){
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if(!$mergedTrees){
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return;
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}
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foreach($mergedTrees as &$mTree){
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//TODO diplay title and reference in case of multiple $mergedTrees -> theme
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$out .= theme('cdm_feature_nodes', $mTree->root->children, $taxon);
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}
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return $out;
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}
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function theme_cdm_featureTreeTOCs($mergedTrees){
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if(!$mergedTrees){
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return;
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}
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//FIXME
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$out = '<div class="featureTOC">';
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$out .= '<h2>' . t('Content') .'</h2>';
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//TODO diplay title and reference in case of multiple $mergedTrees -> theme
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foreach($mergedTrees as &$mTree){
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$out .= theme('cdm_feature_nodesTOC', $mTree->root->children);
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}
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$out .= '</div>';
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return $out;
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}
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function theme_cdm_feature_nodes($featureNodes, $taxon){
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RenderHints::pushToRenderStack('feature_nodes');
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$gallery_settings = getGallerySettings(CDM_DATAPORTAL_DESCRIPTION_GALLERY_NAME);
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foreach($featureNodes as $node){
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// process $descriptionElements with content only
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if(is_array($node->descriptionElements) && count($node->descriptionElements) > 0 || count($node->children) > 0){
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$featureRepresentation = isset($node->feature->representation_L10n) ? $node->feature->representation_L10n : 'Feature';
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$block->module = 'cdm_dataportal';
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if($node->feature->uuid != UUID_IMAGE){
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$block->delta = generalizeString($featureRepresentation);
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$block->subject = theme('cdm_feature_name', $featureRepresentation);
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$block->module = "cdm_dataportal-feature";
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$block->content = '';
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// Display cdm distribution map TODO this is a HACK to a proper generic implementation?
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if($node->feature->uuid == UUID_DISTRIBUTION){
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$block->content .= theme('cdm_distribution_map', $taxon);
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}
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//get the text for the feature block
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//if ($node->feature->titleCache == 'Common Name'){
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if ($node->feature->uuid == UUID_COMMON_NAME){
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$block->content .= theme('cdm_common_names', $node->descriptionElements);
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} else {
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$block->content .= theme('cdm_descriptionElements', $node->descriptionElements, $node->feature->uuid, $taxon->uuid);
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}
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// get media for the feature block
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$media_list = cdm_dataportal_media_from_descriptionElements($node->descriptionElements);
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$captionElements = array('title', 'rights');
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//$block->content .= theme('cdm_media_gallerie', $media_list, "test", 150, 4, false, $captionElements);
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$block->content .= theme('cdm_media_gallery', $media_list,
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CDM_DATAPORTAL_DESCRIPTION_GALLERY_NAME.'_'.$node->feature->uuid,
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$gallery_settings['cdm_dataportal_media_maxextend'],
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$gallery_settings['cdm_dataportal_media_cols'],
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$gallery_settings['cdm_dataportal_media_maxRows'],
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$captionElements
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);
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$block->content .= theme('cdm_footnotes', $node->feature->uuid);
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$block->content .= theme('cdm_annotation_footnotes', $node->feature->uuid);
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// set anchor; FIXME put anchor in $block->subject
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$out .= '<a name="'.$block->delta.'"></a>';
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$out .= theme('block', $block);
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}
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}
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// theme
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if(count($node->children) > 0){
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/*
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$out .= '<div class="nested_description_elements">';
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$out .= theme('cdm_feature_nodes', $node->children, $taxon);
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$out .= '</div>';
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*/
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$text = '';
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foreach ($node->children as $child){
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//$out .= theme('cdm_descriptionElementTextData', $child->descriptionElements[0], false);
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if (is_array($child->descriptionElements)){//if condition added to avoid warnings
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foreach ($child->descriptionElements as $element) {
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$description = str_replace("\n", "<br/>", $element->multilanguageText_L10n->text);
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$description = str_replace($element->feature->titleCache, '<em>' . $element->feature->titleCache . '</em>', $description);
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}
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$text .= $description;
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$description = '';
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}
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}
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$out .= $text;
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}
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}
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RenderHints::popFromRenderStack();
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return $out;
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}
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function theme_cdm_descriptionElementArray($elementArray, $feature, $glue = '', $sortArray = false, $enclosingHtml = 'ul'){
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$out = '<'.$enclosingHtml.' class="description" id="'.$feature->representation_L10n.'">';
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if($sortArray) sort($elementArray);
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$out .= join($elementArray, $glue);
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$out .= '</'.$enclosingHtml.'>';
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return $out;
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}
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function theme_cdm_descriptionElement_CommonTaxonName($element){
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$out = $element->language->representation_L10n . ' (' . $element->area->titleCache . '): ' . $element->name;
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return $out;
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}
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/**
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* TODO: assign a new name to the function? because it is used for the citations
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* textdata elements and not for all text data description elements
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* @param $element The description element which contains the text information
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* @param $asListElement A boolean which determines whether the citations should
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* be renderer as a list or not
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* @return unknown_type Html to be renderized in drupal
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*/
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function theme_cdm_descriptionElementTextData($element, $asListElement, $feature_uuid){
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$description = str_replace("\n", "<br/>", $element->multilanguageText_L10n->text);
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$sourceRefs = '';
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$result = array();
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$out;
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$res_author;
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$res_date;
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if(is_array($element->sources)){
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foreach($element->sources as $source){
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$referenceCitation = theme('cdm_DescriptionElementSource', $source);
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if($description && strlen($description) > 0 && $referenceCitation ){
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$sourceRefs .= ' ('.$referenceCitation.')' ;
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}else if ($referenceCitation){
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$sourceRefs = $referenceCitation;
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}
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if(strlen($sourceRefs) > 0){
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$sourceRefs = '<span class="sources">' . $sourceRefs . '</span>';
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}
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if ($source->nameUsedInSource->uuid){ //do a link to name page
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$name_used_in_source_link_to_show = l($source->nameUsedInSource->titleCache,
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path_to_name($source->nameUsedInSource->uuid),
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array(), NULL, NULL, FALSE ,TRUE);
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}else if (strlen($source->nameUsedInSource->originalNameString) > 0){ //show a text without link
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$name_used_in_source_link_to_show = $source->nameUsedInSource->originalNameString;
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}
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if ($asListElement){
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$out = '<li class="descriptionText">' . $name_used_in_source_link_to_show;
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//adding ":" if necesary
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if ($name_used_in_source_link_to_show && ($description || $sourceRefs)){
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$out .= ': ';
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}
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$out .= $description . $sourceRefs . theme('cdm_annotations_as_footnotekeys', $element) . '</li>';
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}else{
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if ($name_used_in_source_link_to_show){
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$name_used_in_source_link_to_show = ' (name in source: '. $name_used_in_source_link_to_show . ')';
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}
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$out = $description . $sourceRefs . $name_used_in_source_link_to_show;
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}
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}
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}
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//if no sources, print the description
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if(!isset($out)) {
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$out = $description;
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}
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//printing annotations footnotes
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//$out .= theme('cdm_annotations_as_footnotekeys', $element);
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// add annotations as footnote key
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//$out .= theme('cdm_annotations_as_footnotekeys', $element); move above
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return $out;
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}
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function theme_cdm_common_names($elements){
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$text_data_out = '';
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$common_name_out = '';
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$separator = ',';
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$textData_commonNames = array();
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if (is_array($elements)){
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foreach ($elements as $element){
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if ($element->class == 'CommonTaxonName'){
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//$key = '<b>' . $element->language->representation_L10n . '</b> (' . $element->area->titleCache . ')';
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if ($element->language->representation_L10n){
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$key = '<b>' . $element->language->representation_L10n . '</b>';
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$key .= (strlen($element->area->titleCache)>0) ? ' (' . $element->area->titleCache . ')' : '';
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}
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$common_names[$key][] = $element;
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}else if ($element->class == 'TextData' && $element->feature->uuid == UUID_COMMON_NAME){
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$textData_commonNames[] = $element;
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}
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}
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}
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//handling common names
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if (count($common_names) > 0){
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//sorting the a-array based on the area (key)
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ksort($common_names);
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//creating the output to be render by drupal
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foreach ($common_names as $key => $elements){
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$rendered_element_list = '';
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foreach($elements as $element){
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$sourcesFootnoteKeyList = '';
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// adding footnotes sources
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foreach($element->sources as $source){
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if(_is_original_source_type($source)){
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$_fkey = FootnoteManager::addNewFootnote(UUID_COMMON_NAME, theme('cdm_DescriptionElementSource', $source, false));
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$sourcesFootnoteKeyList .= theme('cdm_footnote_key', $_fkey, ($sourcesFootnoteKeyList ? $separator : ''));
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}
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}
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if($element->name){
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$rendered_element_list .= (strlen($rendered_element_list) > 0 ? ', ': '') . $element->name . $sourcesFootnoteKeyList;
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}
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}
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if ($key){
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$common_name_out .= (strlen($common_name_out) > 0 ? '; ': '') . $key . ': ' . $rendered_element_list;
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}else{
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$common_name_out .= (strlen($common_name_out) > 0 ? '; ': '') . $rendered_element_list;
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}
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}
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}
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//handling commons names as text data
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foreach($textData_commonNames as $text_data_element){
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$text_data_out .= theme('cdm_descriptionElementTextData', $text_data_element, true, $text_data_element->feature->uuid);
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}
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$common_name_out = "<div class=common_names_as_common_names> $common_name_out </div>";
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$out_array[] = $text_data_out;
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$common_name_out_text_data = '<div class=common_names_as_text_data>' . theme('cdm_descriptionElementArray', $out_array, $element->feature) . '</div>';
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return $common_name_out;
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//return $common_name_out . theme('cdm_descriptionElementArray', $out_array, $element->feature);
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//return "<div class=common_names> $common_name_out $common_name_out_text_data";
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}
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/**
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* Theme a list of description elements, usually of a specific feature type
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* @param $descriptionElements
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* @return unknown_type
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*/
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function theme_cdm_descriptionElements($descriptionElements, $featureUuid, $taxon_uuid){
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$outArray = array();
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if(variable_get('distribution_sort', 'NO_SORT') != 'NO_SORT'){
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$glue = '';
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$enclosingHtml = 'dl';
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} else {
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$glue = '';
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$enclosingHtml = 'ul';
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}
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$sortOutArray = false;
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$distributionElements = array();
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339
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RenderHints::pushToRenderStack('cdm_descriptionElements');
|
|
340
|
$common_names = theme('cdm_common_names', $descriptionElements);
|
|
341
|
if(is_array($descriptionElements)){//avoiding warning box in drupal for flora malesiana
|
|
342
|
foreach($descriptionElements as $descriptionElement){
|
|
343
|
if($descriptionElement->feature->uuid == UUID_DISTRIBUTION){
|
|
344
|
if($descriptionElement->class == 'Distribution'){
|
|
345
|
$distributionElements[]= $descriptionElement;
|
|
346
|
} else if($descriptionElement->class == 'TextData'){
|
|
347
|
$asListElement = false;
|
|
348
|
$repr = theme ('cdm_descriptionElementTextData', $descriptionElement, $asListElement, $descriptionElement->feature->uuid);
|
|
349
|
|
|
350
|
if( !array_search($repr, $outArray)){
|
|
351
|
$outArray[] = $repr;
|
|
352
|
$glue = '<br/> ';
|
|
353
|
$sortOutArray = true;
|
|
354
|
$enclosingHtml = 'p';
|
|
355
|
}
|
|
356
|
}
|
|
357
|
}else if($descriptionElement->class == 'TextData'){
|
|
358
|
$asListElement = true;
|
|
359
|
$outArray[] = theme('cdm_descriptionElementTextData', $descriptionElement, $asListElement, $descriptionElement->feature->uuid);
|
|
360
|
}else if ($descriptionElement->class == 'CommonTaxonName') {
|
|
361
|
$outArray[] = theme('cdm_descriptionElement_CommonTaxonName', $descriptionElement);
|
|
362
|
}else {
|
|
363
|
$outArray[] = '<li>No method for rendering unknown description class: '.$descriptionElement->classType.'</li>';
|
|
364
|
}
|
|
365
|
}
|
|
366
|
}
|
|
367
|
//if feature = NAME USAGE sort the list of sources
|
|
368
|
//this is ONLY for FLORA MALESIANA and FLORE d'AFRIQUE CENTRALE
|
|
369
|
if($descriptionElement->feature->uuid == UUID_NAME_USAGE){
|
|
370
|
sort($outArray);
|
|
371
|
}
|
|
372
|
|
|
373
|
if(variable_get('distribution_sort', 'NO_SORT') != 'NO_SORT'){
|
|
374
|
$outArray[] = theme('cdm_description_ordered_distributions2', $taxon_uuid, $distributionElements);
|
|
375
|
}else{
|
|
376
|
$outArray[] = theme('cdm_descriptionElementDistribution', $distributionElements);
|
|
377
|
}
|
|
378
|
//$outArray[] = theme('cdm_descriptionElementDistribution', $distributionElements);
|
|
379
|
//$outArray[] = theme('cdm_description_ordered_distributions', $taxon_uuid, $distributionElements);
|
|
380
|
|
|
381
|
// take the feature of the last $descriptionElement
|
|
382
|
$feature = $descriptionElement->feature;
|
|
383
|
$out = theme('cdm_descriptionElementArray', $outArray, $feature, $glue, $sortOutArray, $enclosingHtml);
|
|
384
|
|
|
385
|
RenderHints::popFromRenderStack();
|
|
386
|
return $out;
|
|
387
|
}
|
|
388
|
|
|
389
|
/**
|
|
390
|
*
|
|
391
|
* @param unknown_type $descriptionElements
|
|
392
|
* @return unknown_type
|
|
393
|
*/
|
|
394
|
function theme_cdm_descriptionElementDistribution($descriptionElements){
|
|
395
|
$out = '';
|
|
396
|
$separator = ',';
|
|
397
|
RenderHints::pushToRenderStack('descriptionElementDistribution');
|
|
398
|
RenderHints::setFootnoteListKey(UUID_DISTRIBUTION);
|
|
399
|
foreach($descriptionElements as $descriptionElement){
|
|
400
|
// annotations as footnotes
|
|
401
|
//$annotationFootnoteKeys = theme('cdm_annotations_as_footnotekeys', $descriptionElement);
|
|
402
|
$footNoteKeys = cdm_annotations_as_footnotekeys($descriptionElement);
|
|
403
|
// source references as footnotes
|
|
404
|
foreach($descriptionElement->sources as $source){
|
|
405
|
if(_is_original_source_type($source)){
|
|
406
|
$fn_key = FootnoteManager::addNewFootnote(RenderHints::getFootnoteListKey(), theme('cdm_DescriptionElementSource', $source, false));
|
|
407
|
cdm_add_footnote_to_array($footNoteKeys, $fn_key);// ensure uniqueness of the footnote keys
|
|
408
|
}
|
|
409
|
}
|
|
410
|
// sort and render footnote keys
|
|
411
|
$footnoteKeyListStr = '';
|
|
412
|
asort($footNoteKeys);
|
|
413
|
foreach($footNoteKeys as $footNoteKey){
|
|
414
|
$footnoteKeyListStr .= theme('cdm_footnote_key', $footNoteKey, ($footnoteKeyListStr ? $separator : ''));
|
|
415
|
}
|
|
416
|
$out .= '<span class="descriptionElement descriptionElement-'.$descriptionElement->uuid.'">'.$descriptionElement->area->representation_L10n . $footnoteKeyListStr . ' </span>';
|
|
417
|
}
|
|
418
|
|
|
419
|
//$out = substr($out, 0, strlen($out)-strlen($separator) );
|
|
420
|
|
|
421
|
RenderHints::popFromRenderStack();
|
|
422
|
return $out;
|
|
423
|
|
|
424
|
}
|
|
425
|
|
|
426
|
|
|
427
|
function theme_cdm_description_ordered_distributions2($taxon_uuid, $descriptionElements){
|
|
428
|
//returning null if no description elements
|
|
429
|
if ($descriptionElements == null){
|
|
430
|
return '';
|
|
431
|
}
|
|
432
|
//initialization some variables
|
|
433
|
$out = '';
|
|
434
|
$separator = ',';
|
|
435
|
RenderHints::pushToRenderStack('descriptionElementDistribution');
|
|
436
|
RenderHints::setFootnoteListKey(UUID_DISTRIBUTION);
|
|
437
|
//getting all the taxon description for a given taxon
|
|
438
|
$taxonDescriptions = cdm_ws_get(CDM_WS_PORTAL_TAXON_DESCRIPTIONS, $taxon_uuid);
|
|
439
|
foreach ($taxonDescriptions as $description){
|
|
440
|
$descriptions_uuids[] = $description->uuid;
|
|
441
|
}
|
|
442
|
//getting the sortered distributions (omiting level ??)
|
|
443
|
$request_params = array();
|
|
444
|
$request_params['omitLevels'] = UUID_NAMEDAREALEVEL_TDWGLEVEL_2;
|
|
445
|
$ordered_areas = cdm_ws_get(CDM_WS_PORTAL_DESCRIPTION_DISTRIBUTION_TREE, join(',',$descriptions_uuids), queryString($request_params));
|
|
446
|
$ordered_areas = $ordered_areas->rootElement->children;
|
|
447
|
|
|
448
|
//printing the distributions
|
|
449
|
foreach ($ordered_areas as $element_level1){
|
|
450
|
//level1
|
|
451
|
if ($element_level1->data){
|
|
452
|
$out .= '<dt>' . $element_level1->data->area->representation_L10n . ':</dt> ';
|
|
453
|
}
|
|
454
|
$out .= '<dd>';
|
|
455
|
|
|
456
|
//level3
|
|
457
|
foreach ($element_level1->children as $element_level3){
|
|
458
|
if ($element_level3->data){
|
|
459
|
$text_l3 = $element_level3->data->area->representation_L10n;
|
|
460
|
}
|
|
461
|
$fnKeysLevel3Str = '';
|
|
462
|
$fnKeysLevel3 = cdm_annotations_as_footnotekeys($element_level3->data);
|
|
463
|
foreach($element_level3->data->sources as $source){
|
|
464
|
if(_is_original_source_type($source)){
|
|
465
|
$fn_key3 = FootnoteManager::addNewFootnote(RenderHints::getFootnoteListKey(), theme('cdm_DescriptionElementSource', $source, false));
|
|
466
|
cdm_add_footnote_to_array($fnKeysLevel3, $fn_key3);
|
|
467
|
}
|
|
468
|
}
|
|
469
|
//level4
|
|
470
|
$l4_regions = array();
|
|
471
|
foreach ($element_level3->children as $element_level4){
|
|
472
|
if ($element_level4->data){
|
|
473
|
$text_l4 = $element_level4->data->area->representation_L10n;
|
|
474
|
$l4_regions[$element_level3->data->area->representation_L10n] = '';
|
|
475
|
$fnKeysLevel4Str = '';
|
|
476
|
$fnKeysLevel4 = cdm_annotations_as_footnotekeys($element_level4->data);
|
|
477
|
foreach($element_level4->data->sources as $source){
|
|
478
|
if(_is_original_source_type($source)){
|
|
479
|
$fn_key4 = FootnoteManager::addNewFootnote(RenderHints::getFootnoteListKey(), theme('cdm_DescriptionElementSource', $source, false));
|
|
480
|
cdm_add_footnote_to_array($fnKeysLevel4, $fn_key4);
|
|
481
|
}
|
|
482
|
}
|
|
483
|
$l4_regions[$text_l4] = $fnKeysLevel4;
|
|
484
|
}
|
|
485
|
}//level4
|
|
486
|
//managing level3 and level4 for generating the right output
|
|
487
|
foreach ($fnKeysLevel3 as $key3){
|
|
488
|
foreach ($l4_regions as $key4 => $value4){
|
|
489
|
cdm_add_footnote_to_array($l4_regions[$key4], $key3);
|
|
490
|
}
|
|
491
|
}
|
|
492
|
if ($element_level3->numberOfChildren == 1 &&
|
|
493
|
$text_l3 == $element_level3->children[0]->data->area->representation_L10n){
|
|
494
|
//var_dump($element_level3->children[0]->data->area->representation_L10n);
|
|
495
|
$fnStr = '';
|
|
496
|
$region = array_pop($l4_regions);
|
|
497
|
foreach($region as $key){
|
|
498
|
$fnStr .= theme('cdm_footnote_key', $key, ($fnStr ? $separator : ''));
|
|
499
|
}
|
|
500
|
$out .= "$text_l3 $fnStr; ";
|
|
501
|
}else{
|
|
502
|
$fnKeysLevel3Str = '';
|
|
503
|
foreach($fnKeysLevel3 as $key){
|
|
504
|
$fnKeysLevel3Str .= theme('cdm_footnote_key', $key, ($fnKeysLevel3Str ? $separator : ''));
|
|
505
|
}
|
|
506
|
$text_l4_aux = '';
|
|
507
|
foreach ($l4_regions as $key => $value){
|
|
508
|
$fnKeysLevel4Str = '';
|
|
509
|
if (is_array($l4_regions[$key])) {
|
|
510
|
foreach ($l4_regions[$key] as $fnkey){//warning why?
|
|
511
|
$fnKeysLevel4Str .= theme('cdm_footnote_key', $fnkey, ($fnKeysLevel4Str ? $separator : ''));
|
|
512
|
}
|
|
513
|
}
|
|
514
|
if ($key != $text_l3 || sizeof($l4_regions > 1)){
|
|
515
|
$text_l4_aux .= "$key $fnKeysLevel4Str, ";
|
|
516
|
}
|
|
517
|
}
|
|
518
|
$text_l4_aux = substr($text_l4_aux, 0, -2);
|
|
519
|
if (strlen($text_l4_aux) > 0){
|
|
520
|
$out .= "$text_l3 $fnKeysLevel3Str ( $text_l4_aux ); ";
|
|
521
|
}else{
|
|
522
|
$out .= "$text_l3 $fnKeysLevel3Str; ";
|
|
523
|
}
|
|
524
|
|
|
525
|
}
|
|
526
|
}//level3
|
|
527
|
$out = substr($out, 0, -2);
|
|
528
|
$out .= '.</dd>';
|
|
529
|
}//level1
|
|
530
|
|
|
531
|
RenderHints::popFromRenderStack();
|
|
532
|
return $out;
|
|
533
|
}
|
|
534
|
|
|
535
|
|
|
536
|
function theme_cdm_description_ordered_distributions($taxon_uuid, $descriptionElements){
|
|
537
|
|
|
538
|
if ($descriptionElements == null){
|
|
539
|
return '';
|
|
540
|
}
|
|
541
|
$out = '';
|
|
542
|
$separator = ',';
|
|
543
|
RenderHints::pushToRenderStack('descriptionElementDistribution');
|
|
544
|
RenderHints::setFootnoteListKey(UUID_DISTRIBUTION);
|
|
545
|
|
|
546
|
//getting all the taxon description for a given taxon
|
|
547
|
$taxonDescriptions = cdm_ws_get(CDM_WS_PORTAL_TAXON_DESCRIPTIONS, $taxon_uuid);
|
|
548
|
foreach ($taxonDescriptions as $description){
|
|
549
|
$descriptions_uuids[] = $description->uuid;
|
|
550
|
}
|
|
551
|
//getting the sortered distributions (omiting level ??)
|
|
552
|
$request_params = array();
|
|
553
|
$request_params['omitLevels'] = UUID_NAMEDAREALEVEL_TDWGLEVEL_2;
|
|
554
|
//$ordered_areas = cdm_ws_get(CDM_WS_PORTAL_DESCRIPTION_AREAS_TREE, join(',',$descriptions_uuids), queryString($request_params));
|
|
555
|
$ordered_areas2 = cdm_ws_get(CDM_WS_PORTAL_DESCRIPTION_DISTRIBUTION_TREE, join(',',$descriptions_uuids), queryString($request_params));
|
|
556
|
$ordered_areas2 = $ordered_areas2->rootElement->children;
|
|
557
|
|
|
558
|
//printing the distributions
|
|
559
|
foreach ($ordered_areas2 as $element_l1){//level 1
|
|
560
|
if ($element_l1->data){
|
|
561
|
$out .= '<dt>' . $element_l1->data->area->representation_L10n . ':</dt> ';
|
|
562
|
}
|
|
563
|
$out .= '<dd>';
|
|
564
|
|
|
565
|
foreach ($element_l1->children as $element_l3){//level 3
|
|
566
|
$out_l4 = '';
|
|
567
|
if ($element_l3->data){
|
|
568
|
$l3 = $element_l3->data->area->representation_L10n;
|
|
569
|
}
|
|
570
|
if (sizeof($element_l3->children) == 0){
|
|
571
|
$footnoteKeyListStr2 = '';
|
|
572
|
$footNoteKeys2 = cdm_annotations_as_footnotekeys($element_l3->data);
|
|
573
|
$superFootNoteKeys = array();
|
|
574
|
foreach($element_l3->data->sources as $source){
|
|
575
|
if(_is_original_source_type($source)){
|
|
576
|
//$footNoteKeys2[] = FootnoteManager::addNewFootnote(RenderHints::getFootnoteListKey(), theme('cdm_DescriptionElementSource', $source, false));
|
|
577
|
$fn_key3 = FootnoteManager::addNewFootnote(RenderHints::getFootnoteListKey(), theme('cdm_DescriptionElementSource', $source, false));
|
|
578
|
cdm_add_footnote_to_array($footNoteKeys2, $fn_key3);
|
|
579
|
cdm_add_footnote_to_array($superFootNoteKeys, $fn_key3);
|
|
580
|
}
|
|
581
|
}
|
|
582
|
foreach($footNoteKeys2 as $key){
|
|
583
|
$footnoteKeyListStr2 .= theme('cdm_footnote_key', $key, ($footnoteKeyListStr2 ? $separator : ''));
|
|
584
|
}
|
|
585
|
//$out_l4 .= $l3 . $footnoteKeyListStr2 . ', ';
|
|
586
|
$out_l4 .= $l3 . ', ';
|
|
587
|
}
|
|
588
|
$l4_aux = array();
|
|
589
|
foreach ($element_l3->children as $element_l4){//level 4
|
|
590
|
if ($element_l4->data){
|
|
591
|
$l4 = $element_l4->data->area->representation_L10n;
|
|
592
|
if (strlen($l4) > 0){
|
|
593
|
//$out_l4 .= $l4;
|
|
594
|
$footnoteKeyListStr = '';
|
|
595
|
$footNoteKeys = cdm_annotations_as_footnotekeys($element_l4->data);
|
|
596
|
if(isset($element_l4->data->sources)){
|
|
597
|
foreach($element_l4->data->sources as $source){
|
|
598
|
if(_is_original_source_type($source)){
|
|
599
|
//$footNoteKeys[] = FootnoteManager::addNewFootnote(RenderHints::getFootnoteListKey(), theme('cdm_DescriptionElementSource', $source, false));
|
|
600
|
$fn_key4 = FootnoteManager::addNewFootnote(RenderHints::getFootnoteListKey(), theme('cdm_DescriptionElementSource', $source, false));
|
|
601
|
cdm_add_footnote_to_array($footNoteKeys, $fn_key4);
|
|
602
|
cdm_add_footnote_to_array($superFootNoteKeys, $fn_key4);
|
|
603
|
}
|
|
604
|
}
|
|
605
|
}
|
|
606
|
foreach($footNoteKeys as $key){
|
|
607
|
$footnoteKeyListStr .= theme('cdm_footnote_key', $key, ($footnoteKeyListStr ? $separator : ''));
|
|
608
|
}
|
|
609
|
$out_l4 .= $l4 . $footnoteKeyListStr .', ';
|
|
610
|
$l4_aux[] = $l4 ;
|
|
611
|
|
|
612
|
}
|
|
613
|
}
|
|
614
|
}
|
|
615
|
$out_l4 = substr($out_l4, 0, -2);
|
|
616
|
/*
|
|
617
|
$pieces1 = explode(", ", $out_l4); //var_dump($pieces1[0]);
|
|
618
|
$pieces2 = explode('<span class="footnote-key', $pieces1[0]);
|
|
619
|
if (((sizeof($pieces1) == 1) && substr_count($pieces2[0], $l3) > 0) || strlen($out_l4)<2){
|
|
620
|
$out .= $out_l4 . $footnoteKeyListStr2 . '; ';
|
|
621
|
}else{
|
|
622
|
$out .= $l3 . $footnoteKeyListStr2 . ' (' . $out_l4 . '); ';
|
|
623
|
}
|
|
624
|
*/
|
|
625
|
$superfootnoteKeyListStr = '';
|
|
626
|
foreach($superFootNoteKeys as $key){
|
|
627
|
$superfootnoteKeyListStr .= theme('cdm_footnote_key', $key, ($superfootnoteKeyListStr ? $separator : ''));
|
|
628
|
} $superfootnoteKeyListStr = '';
|
|
629
|
if (empty($l4_aux)){
|
|
630
|
$out .= $out_l4 . '; '; var_dump("caso1) $l3:$l4");
|
|
631
|
}elseif ( (sizeof($l4_aux) == 1) && $l4_aux[0] == $l3 || empty($l4_aux)){
|
|
632
|
$out .= $l4 . $superfootnoteKeyListStr . '; '; var_dump("caso2) $l3:$l4");
|
|
633
|
//$out .= $l4 . '; ';
|
|
634
|
}else{
|
|
635
|
$out .= $l3 . $footnoteKeyListStr2 . ' (' . $out_l4 . '); '; var_dump("caso3) $l3:$l4");
|
|
636
|
//$out .= $l3 . ' (' . $out_l4 . '); ';
|
|
637
|
}
|
|
638
|
|
|
639
|
|
|
640
|
|
|
641
|
}
|
|
642
|
$out = substr($out, 0, -2);
|
|
643
|
$out .= '.</dd>';
|
|
644
|
}
|
|
645
|
RenderHints::popFromRenderStack();
|
|
646
|
return $out;
|
|
647
|
|
|
648
|
//ignoring the root element because is garbage
|
|
649
|
/*
|
|
650
|
$ordered_areas = $ordered_areas->rootElement->children;
|
|
651
|
$out = '';
|
|
652
|
|
|
653
|
foreach ($ordered_areas as $element_l1){//level 1
|
|
654
|
if ($element_l1->data){
|
|
655
|
//$result[] = $element_l1->data->titleCache;
|
|
656
|
$out .= '<b>' . $element_l1->data->titleCache . ':</b> ';
|
|
657
|
}
|
|
658
|
foreach ($element_l1->children as $element_l2){//level 2
|
|
659
|
$out_l3 = '';
|
|
660
|
if ($element_l2->data){
|
|
661
|
//$result[][] = $element_l2->data->titleCache;
|
|
662
|
//$out .= $element_l2->data->titleCache . '[';
|
|
663
|
}
|
|
664
|
foreach ($element_l2->children as $element_l3){//level 3
|
|
665
|
$out_l4 = '';
|
|
666
|
if ($element_l3->data){
|
|
667
|
//$result[][][] = $element_l3->data->titleCache;
|
|
668
|
$out .= $element_l3->data->titleCache;
|
|
669
|
|
|
670
|
$l3 = $element_l3->data->titleCache;
|
|
671
|
}
|
|
672
|
foreach ($element_l3->children as $element_l4){//level 4
|
|
673
|
if ($element_l4->data){
|
|
674
|
//$result[][][][] = $element_14->data->titleCache;
|
|
675
|
$l4 = $element_l4->data->titleCache;
|
|
676
|
if (sizeof($l4) != 0 && $l4 != $l3){
|
|
677
|
$out_l4 .= $l4 . ', ';
|
|
678
|
}
|
|
679
|
}
|
|
680
|
}
|
|
681
|
$out_l4 = substr($out_l4, 0, -2);
|
|
682
|
if($out_l4){
|
|
683
|
$out .= ' (' . $out_l4 . '); ';
|
|
684
|
}else{
|
|
685
|
$out .= '; ';
|
|
686
|
}
|
|
687
|
}
|
|
688
|
}
|
|
689
|
$out = substr($out, 0, -2);
|
|
690
|
$out .= '<br>';
|
|
691
|
}
|
|
692
|
*/
|
|
693
|
}
|
|
694
|
|
|
695
|
|
|
696
|
function theme_cdm_DescriptionElementSource($descriptionElementSource, $doLink = TRUE){
|
|
697
|
|
|
698
|
if(isset($descriptionElementSource->citation)){
|
|
699
|
$out = theme('cdm_reference', $descriptionElementSource->citation, $descriptionElementSource->citationMicroReference, $doLink);
|
|
700
|
}
|
|
701
|
return $out;
|
|
702
|
}
|
|
703
|
|
|
704
|
|
|
705
|
/*
|
|
706
|
function theme_cdm_descriptionElementDistribution($descriptionElements){
|
|
707
|
|
|
708
|
$out = '';
|
|
709
|
$separator = ',';
|
|
710
|
RenderHints::pushToRenderStack('descriptionElementDistribution');
|
|
711
|
RenderHints::setFootnoteListKey(UUID_DISTRIBUTION);
|
|
712
|
foreach($descriptionElements as $descriptionElement){
|
|
713
|
// annotations as footnotes
|
|
714
|
$annotationFootnoteKeys = theme('cdm_annotations_as_footnotekeys', $descriptionElement);
|
|
715
|
// source references as footnotes
|
|
716
|
$sourcesFootnoteKeyList = '';
|
|
717
|
foreach($descriptionElement->sources as $source){
|
|
718
|
if(_is_original_source_type($source)){
|
|
719
|
$_fkey = FootnoteManager::addNewFootnote(UUID_DISTRIBUTION, theme('cdm_DescriptionElementSource', $source, false));
|
|
720
|
$sourcesFootnoteKeyList .= theme('cdm_footnote_key', $_fkey, UUID_DISTRIBUTION, ($sourcesFootnoteKeyList ? $separator : ''));
|
|
721
|
}
|
|
722
|
}
|
|
723
|
if($annotationFootnoteKeys && $sourcesFootnoteKeyList){
|
|
724
|
$annotationFootnoteKeys .= $separator;
|
|
725
|
}
|
|
726
|
$out .= $descriptionElement->area->representation_L10n . $annotationFootnoteKeys . $sourcesFootnoteKeyList . ' ';
|
|
727
|
}
|
|
728
|
|
|
729
|
$out = substr($out, 0, strlen($out)-strlen($separator) );
|
|
730
|
|
|
731
|
RenderHints::popFromRenderStack();
|
|
732
|
return $out;
|
|
733
|
|
|
734
|
}
|
|
735
|
*/
|
|
736
|
|
|
737
|
|
|
738
|
/**
|
|
739
|
* TODO
|
|
740
|
* Quick-and-dirty solution to show distribution service to exemplar groups
|
|
741
|
*
|
|
742
|
* @param unknown_type $featureTo
|
|
743
|
* @return unknown
|
|
744
|
*/
|
|
745
|
function theme_cdm_distribution_map($taxon){
|
|
746
|
|
|
747
|
$server = variable_get('cdm_dataportal_geoservice_access_point', false);
|
|
748
|
|
|
749
|
if(!$server){
|
|
750
|
//warning message
|
|
751
|
drupal_set_message('No \'Geoservice Access Point\' has been set so far. '
|
|
752
|
. 'Please configure the variable \'Geoservice Access Point\' here '
|
|
753
|
. l('CDM Dataportal Settings', 'admin/settings/cdm_dataportal/geo'), 'warning');
|
|
754
|
//message to render
|
|
755
|
return "<p>No geoservice specified</p>";
|
|
756
|
}else{
|
|
757
|
$fontStyles = array(0 => "plane", 1 => "italic");
|
|
758
|
|
|
759
|
$map_data_parameters = cdm_ws_get(CDM_WS_GEOSERVICE_DISTRIBUTIONMAP, $taxon->uuid);
|
|
760
|
$query_string = $map_data_parameters->String;
|
|
761
|
if(!$query_string){
|
|
762
|
// the $query_string is empty if there are no distribution areas defined
|
|
763
|
return ;
|
|
764
|
}
|
|
765
|
|
|
766
|
$query_string = str_replace('%3A', ":", $query_string);
|
|
767
|
|
|
768
|
$display_width = variable_get('cdm_dataportal_geoservice_display_width', false);
|
|
769
|
$bounding_box = variable_get('cdm_dataportal_geoservice_bounding_box', false);
|
|
770
|
$labels_on = variable_get('cdm_dataportal_geoservice_labels_on', 0);
|
|
771
|
|
|
772
|
$query_string .= ($display_width ? '&img=false&ms=' . $display_width: '').
|
|
773
|
($bounding_box ? '&bbox=' . $bounding_box : '')
|
|
774
|
. ($labels_on ? '&labels=' . $labels_on : '');
|
|
775
|
|
|
776
|
if(variable_get('cdm_dataportal_map_openlayers', 1)){
|
|
777
|
|
|
778
|
/* =========== display distributions using the openlayers map viewer =========== */
|
|
779
|
|
|
780
|
$legend_url_font_size = variable_get('cdm_dataportal_geoservice_legend_font_size', 10);
|
|
781
|
$legend_url_font_style = variable_get('cdm_dataportal_geoservice_legend_font_style', 1);
|
|
782
|
$legend_url_font_style = $fontStyles[$legend_url_font_style];
|
|
783
|
$legend_url_icon_width = variable_get('cdm_dataportal_geoservice_legend_icon_width', 35);
|
|
784
|
$legend_url_icon_height = variable_get('cdm_dataportal_geoservice_legend_icon_height', 15);
|
|
785
|
|
|
786
|
//$legendQueryStr = $geoserver_uri . "/GetLegendGraphic?SERVICE=WMS&VERSION=1.1.1&format=image".urlencode('/')."png&TRANSPARENT=TRUE";
|
|
787
|
$legendFormatQueryStr = "format=image".urlencode('/')."png&TRANSPARENT=TRUE";
|
|
788
|
$legendFormatQueryStr .= "&WIDTH=".$legend_url_icon_width."&HEIGHT=".$legend_url_icon_height."&";
|
|
789
|
$legendFormatQueryStr .="layer=topp".urlencode(':')."tdwg_level_4&LEGEND_OPTIONS=forceLabels".urlencode(':')."on;fontStyle".urlencode(':').$legend_url_font_style.";fontSize".urlencode(':').$legend_url_font_size."&SLD=".urlencode($sldLegend);
|
|
790
|
|
|
791
|
$out = get_openlayers_map(
|
|
792
|
$display_width,
|
|
793
|
null,
|
|
794
|
$query_string,
|
|
795
|
$legendFormatQueryStr,
|
|
796
|
variable_get('cdm_dataportal_geoservice_map_caption', '')
|
|
797
|
);
|
|
798
|
|
|
799
|
} else {
|
|
800
|
// simple image
|
|
801
|
$mapStaticCaption = '&mc_s=Georgia,15,blue&mc=' . variable_get('cdm_dataportal_geoservice_map_caption', '');
|
|
802
|
|
|
803
|
$query_string .= ($display_width ? '&img=true&ms=' . $display_width: '')
|
|
804
|
.'&img=true&legend=1&mlp=3' . $mapStaticCaption . '&recalculate=false';
|
|
805
|
|
|
806
|
$mapUri = url($server. '/areas.php?' .$map_data_parameters->String, $query_string);
|
|
807
|
$out .= '<img class="distribution_map" src="' . $mapUri . '" alt="Distribution Map" />';
|
|
808
|
}
|
|
809
|
/*
|
|
810
|
// add a simple legend
|
|
811
|
if(variable_get('cdm_dataportal_geoservice_legend_on', TRUE)){
|
|
812
|
$legenddata = array(
|
|
813
|
'native' => "4daf4a",
|
|
814
|
'native_doubtfully_native' => "377eb8",
|
|
815
|
'cultivated' => "984ea3",
|
|
816
|
'introduced' => "ff7f00",
|
|
817
|
'introduced adventitious' => "ffff33",
|
|
818
|
'introduced cultivated' => "a65628",
|
|
819
|
'introduced naturalized' => "f781bf"
|
|
820
|
);
|
|
821
|
|
|
822
|
$out .= '<div class="distribution_map_legend">';
|
|
823
|
foreach($legenddata as $term => $color){
|
|
824
|
$out .= '<img style="width: 3em; height: 1em; background-color: #'.$color.'" src="'.
|
|
825
|
drupal_get_path('module', 'cdm_dataportal').'/images/clear.gif" />'.t($term).' ';
|
|
826
|
}
|
|
827
|
$out .= '</div>';
|
|
828
|
|
|
829
|
}
|
|
830
|
*/
|
|
831
|
return $out;
|
|
832
|
}
|
|
833
|
}
|