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Revision 30845bda

Added by Andreas Kohlbecker over 7 years ago

ref #2985 implementing named area page to make area details like level accessible

View differences:

modules/cdm_dataportal/includes/occurrences.inc
18 18 

  		




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/**


  		




  21
  
  
    
 * @param $preservedSpecimenDTO


  		




  22
  
  
    
 * @param $detail_html


  		




  23
  
  
    
 * @return string


  		




  24
  
  
    
 */


  		




  25
  
  
    
function compose_cdm_specimen_page($specimenUuid)


  		




  26
  
  
    
{


  		




  27
  
  
    
    drupal_set_title("Specimen Details");


  		




  28
  
  
    
    $preservedSpecimenDTO = cdm_ws_get(CDM_WS_PORTAL_OCCURRENCE, array($specimenUuid, 'specimenDerivates'));


  		




  29
  
  
    

  		




  30
  
  
    
    $render_array = array();


  		




  31
  
  
    
    RenderHints::pushToRenderStack('specimen_page');


  		




  32
  
  
    

  		




  33
  
  
    
    $detail_html = compose_cdm_specimen_page_html($preservedSpecimenDTO, true);


  		




  34
  
  
    
    $render_array['specimen_html'] = array(


  		




  35
  
  
    
        '#markup' => $detail_html


  		




  36
  
  
    
    );


  		




  37
  
  
    

  		




  38
  
  
    
    RenderHints::popFromRenderStack();


  		




  39
  
  
    
    return $render_array;


  		




  40
  
  
    
}


  		




  41
  
  
    

  		




  42
  
  
    
/**


  		




  43
  
  
    
 * @param $preservedSpecimenDTO


  		




  
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 * Provides the HTML markup for a specimen page


  		




  
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 *


  		




  
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 * @param $specimen


  		




  
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 *


  		




  44
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 * @return string


  		




  
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 *  The markup for a specimen page


  		




  45
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 */


  		




  46
  
  
    
function compose_cdm_specimen_page_html($preservedSpecimenDTO, $isSpecimenPage = false)


  		




  
  28
  
    
function render_cdm_specimen_page($specimen, $is_specimen_page = false)


  		




  47
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{


  		




  48
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    $detail_html = "";


  		




  49
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    //link to specimen page


  		




  50
  
  
    
    $pathToSpecimen = path_to_specimen($preservedSpecimenDTO->uuid);


  		




  51
  
  
    
    if (!$isSpecimenPage) {


  		




  52
  
  
    
        $specimenPageLink = l($preservedSpecimenDTO->accessionNumber, $pathToSpecimen, array('attributes' => array('target' => '_blank')));


  		




  
  32
  
    
    $pathToSpecimen = path_to_specimen($specimen->uuid);


  		




  
  33
  
    
    if (!$is_specimen_page) {


  		




  
  34
  
    
        $specimenPageLink = l($specimen->accessionNumber, $pathToSpecimen, array('attributes' => array('target' => '_blank')));


  		




  53
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        $detail_html .= "<strong>$specimenPageLink</strong><br>";


  		




  54
  36
  
    
    }


  		




  55
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  56
  
  
    
    if($isSpecimenPage) {


  		




  57
  
  
    
        if($preservedSpecimenDTO->citation){


  		




  58
  
  
    
            $detail_html .= "<br>".create_label("Citation") . $preservedSpecimenDTO->citation . "<br>";


  		




  
  38
  
    
    if($is_specimen_page) {


  		




  
  39
  
    
        if($specimen->citation){


  		




  
  40
  
    
            $detail_html .= "<br>".create_label("Citation") . $specimen->citation . "<br>";


  		




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        }


  		




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    }


  		




  61
  
  
    
    if($preservedSpecimenDTO->preferredStableUri){


  		




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        $detail_html .= "<br>".create_label("Preferred stable URI") . cdm_external_uri($preservedSpecimenDTO->preferredStableUri) . "<br>";


  		




  
  43
  
    
    if($specimen->preferredStableUri){


  		




  
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        $detail_html .= "<br>".create_label("Preferred stable URI") . cdm_external_uri($specimen->preferredStableUri) . "<br>";


  		




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    }


  		




  64
  
  
    
    if($isSpecimenPage){


  		




  
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    if($is_specimen_page){


  		




  65
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        // associated taxa


  		




  66
  
  
    
        if($preservedSpecimenDTO->associatedTaxa){


  		




  
  48
  
    
        if($specimen->associatedTaxa){


  		




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            $detail_html .= "<br>";


  		




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            $detail_html .= create_label("Associated with");


  		




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                if(sizeof($preservedSpecimenDTO->associatedTaxa)>1){


  		




  
  51
  
    
                if(sizeof($specimen->associatedTaxa)>1){


  		




  70
  52
  
    
                    $detail_html .= "<br>";


  		




  71
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                }


  		




  72
  
  
    
            foreach($preservedSpecimenDTO->associatedTaxa as $associatedTaxon){


  		




  
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            foreach($specimen->associatedTaxa as $associatedTaxon){


  		




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                $detail_html .= l($associatedTaxon->second, path_to_taxon($associatedTaxon->first, "specimens"));//$associatedTaxon->second."<br>";


  		




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            }


  		




  75
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        }


  		




  76
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    }


  		




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    // - type information


  		




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    $types = "";


  		




  79
  
  
    
    if (isset($preservedSpecimenDTO->types)) {


  		




  
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    if (isset($specimen->types)) {


  		




  80
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        //typed taxa


  		




  81
  
  
    
        if(sizeof($preservedSpecimenDTO->types)>1){


  		




  
  63
  
    
        if(sizeof($specimen->types)>1){


  		




  82
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            $detail_html .= "<br>";


  		




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        }


  		




  84
  
  
    
        foreach ($preservedSpecimenDTO->types as $typeStatus => $typedTaxa) {


  		




  85
  
  
    
            if($isSpecimenPage){


  		




  86
  
  
    
                if($preservedSpecimenDTO->types){


  		




  
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        foreach ($specimen->types as $typeStatus => $typedTaxa) {


  		




  
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            if($is_specimen_page){


  		




  
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                if($specimen->types){


  		




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                    $detail_html .= "<i>".$typeStatus."</i>: ";


  		




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                    foreach($typedTaxa as $typedTaxon){


  		




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                        $detail_html .= $typedTaxon." ";


  		




  ......




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            }


  		




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        }


  		




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    }


  		




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    $derivateDataDTO = $preservedSpecimenDTO->derivateDataDTO;


  		




  
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    $derivateDataDTO = $specimen->derivateDataDTO;


  		




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    // - specimen scans


  		




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    $specimenScans = create_html_links($derivateDataDTO->specimenScans, true);


  		




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    // - molecular data


  		




  ......




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    $detailImages = create_html_links($derivateDataDTO->detailImages, true);


  		




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    if ($types) {


  		




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        $detail_html .= $isSpecimenPage?"<br>":"";


  		




  
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        $detail_html .= $is_specimen_page?"<br>":"";


  		




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        $detail_html .= create_label("Type(s)") . $types . "<br>";


  		




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    }


  		




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    if ($specimenScans and !$isSpecimenPage) {


  		




  
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    if ($specimenScans and !$is_specimen_page) {


  		




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        $detail_html .= create_label("Specimen Scans") . $specimenScans . "<br>";


  		




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    }


  		




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    //specimen scan image gallery


  		




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    if($isSpecimenPage and isset($derivateDataDTO->specimenScanUuids) and !empty($derivateDataDTO->specimenScanUuids)) {


  		




  
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    if($is_specimen_page and isset($derivateDataDTO->specimenScanUuids) and !empty($derivateDataDTO->specimenScanUuids)) {


  		




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        $detail_html .= addImageGallery("Specimen scans", $derivateDataDTO->specimenScanUuids);


  		




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    }


  		




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    if ($molecularData) {


  		




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        $detail_html .= $isSpecimenPage?"<br>":"";


  		




  
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        $detail_html .= $is_specimen_page?"<br>":"";


  		




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        $detail_html .= create_label("Molecular Data") . $molecularData . "<br>";


  		




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    }


  		




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  157
  
  
    
    if ($detailImages and !$isSpecimenPage) {


  		




  
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    if ($detailImages and !$is_specimen_page) {


  		




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        $detail_html .= create_label("Detail Images") . $detailImages . "<br>";


  		




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    }


  		




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    //detail image gallery


  		




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    if($isSpecimenPage and isset($derivateDataDTO->detailImageUuids) and !empty($derivateDataDTO->detailImageUuids)){


  		




  
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    if($is_specimen_page and isset($derivateDataDTO->detailImageUuids) and !empty($derivateDataDTO->detailImageUuids)){


  		




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        $detail_html .= addImageGallery("Detail Images", $derivateDataDTO->detailImageUuids);


  		




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    }


  		




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    //character data


  		




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    if ($preservedSpecimenDTO->characterData) {


  		




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        $detail_html .= $isSpecimenPage?"<br>":"";


  		




  
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    if ($specimen->characterData) {


  		




  
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        $detail_html .= $is_specimen_page?"<br>":"";


  		




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        $detail_html .= create_label("Character Data");


  		




  170
  
  
    
        if($isSpecimenPage) {


  		




  
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        if($is_specimen_page) {


  		




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            $detail_html .= "<br>";


  		




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            foreach ($preservedSpecimenDTO->characterData as $characterStatePair) {


  		




  
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            foreach ($specimen->characterData as $characterStatePair) {


  		




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                $detail_html .= "<i>" . $characterStatePair->first . "</i>:" . $characterStatePair->second;


  		




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                $detail_html .= "<br>";


  		




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            }


  		




  ......




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            if (isset($value->collectingAreas)) {


  		




  505
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              $area_representations = array();


  		




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              foreach ($value->collectingAreas as $area) {


  		




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                $area_representations[] = $area->representation_L10n;


  		




  
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                $area_representations[] = l($area->representation_L10n, path_to_named_area($area->uuid));


  		




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              }


  		




  509
  
  
    
              @_description_list_group_add($groups, cdm_occurrence_field_name_label('collectingAreas'), implode(', ', $area_representations));


  		




  
  491
  
    
              @_description_list_group_add($groups, cdm_occurrence_field_name_label('collectingAreas'),


  		




  
  492
  
    
                array(


  		




  
  493
  
    
                  array('#markup' => implode(', ', $area_representations))


  		




  
  494
  
    
                )


  		




  
  495
  
    
              );


  		




  510
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            }


  		




  511
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            if (isset($value->exactLocation) && $value->exactLocation->sexagesimalString) {


  		




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              $sub_dl_groups = array();


  		












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