Revision 1e87f89f
Added by Andreas Kohlbecker about 4 years ago
| modules/cdm_dataportal/includes/pages.inc | ||
|---|---|---|
| 115 | 115 |
array($taxon->uuid, 'associatedFieldUnits'), |
| 116 | 116 |
$by_associatedtaxon_query . '&pageSize=' . variable_get('cdm_dataportal_compressed_specimen_derivate_table_page_size')
|
| 117 | 117 |
); |
| 118 |
|
|
| 118 | 119 |
if (isset($pager_field_units->records[0])) {
|
| 119 | 120 |
$field_unit_uuids = array(); |
| 120 | 121 |
foreach ($pager_field_units->records as $field_unit) {
|
| 121 | 122 |
$field_unit_uuids[] = $field_unit->uuid; |
| 122 | 123 |
} |
| 123 | 124 |
} |
| 124 |
// get icon images |
|
| 125 |
$expand_icon = font_awesome_icon_markup( |
|
| 126 |
'fa-plus-square-o', |
|
| 127 |
array( |
|
| 128 |
'alt'=>'Show details', |
|
| 129 |
'class' => array('expand_icon')
|
|
| 130 |
) |
|
| 131 |
); |
|
| 132 |
$collapse_icon = font_awesome_icon_markup( |
|
| 133 |
'fa-minus-square-o', |
|
| 134 |
array( |
|
| 135 |
'alt'=>'Show details', |
|
| 136 |
'class' => array('collapse_icon')
|
|
| 137 |
) |
|
| 138 |
); |
|
| 139 |
$detail_image_icon = '<img title="Detail Image" src="' . base_path() . drupal_get_path('module', 'cdm_dataportal') . '/images/detail_image_derivate-16x16-32.png' . '"/>';
|
|
| 140 |
$checked_box_icon = '<img src="' . base_path() . drupal_get_path('module', 'cdm_dataportal') . '/images/step_done.gif' . '"/>';
|
|
| 141 |
$sequence_icon = '<img title="Molecular Data" src="' . base_path() . drupal_get_path('module', 'cdm_dataportal') . '/images/sequence_derivate-16x16-32.png' . '"/>';
|
|
| 142 |
$character_data_icon = '<img title="Character Data" src="' . base_path() . drupal_get_path('module', 'cdm_dataportal') . '/images/character_data_derivate-16x16-32.png' . '"/>';
|
|
| 143 |
if (isset($pagerFieldUnits->records[0])) {
|
|
| 144 |
$rowcount = 0; |
|
| 145 |
foreach ($field_unit_uuids as $field_unit_uuid) {
|
|
| 146 |
//get derivate hierarchy for the FieldUnit |
|
| 147 |
$derivateHierarchy = cdm_ws_get(CDM_WS_PORTAL_OCCURRENCE, array($field_unit_uuid, 'derivateHierarchy')); |
|
| 148 |
if($derivateHierarchy){
|
|
| 149 |
//summary row |
|
| 150 |
$rows[] = array( |
|
| 151 |
'data' => array( |
|
| 152 |
array( |
|
| 153 |
'data' => $expand_icon . $collapse_icon, |
|
| 154 |
'class' => array('summary_row_cell', 'summary_row_icon', 'expand_column')
|
|
| 155 |
), |
|
| 156 |
array( |
|
| 157 |
'data' => $derivateHierarchy->country, |
|
| 158 |
'class' => array('summary_row_cell')
|
|
| 159 |
), |
|
| 160 |
array( |
|
| 161 |
'data' => $derivateHierarchy->date, |
|
| 162 |
'class' => array('summary_row_cell')
|
|
| 163 |
), |
|
| 164 |
array( |
|
| 165 |
'data' => $derivateHierarchy->collection, |
|
| 166 |
'class' => array('summary_row_cell')
|
|
| 167 |
), |
|
| 168 |
array( |
|
| 169 |
'data' => $derivateHierarchy->herbarium, |
|
| 170 |
'class' => array('summary_row_cell')
|
|
| 171 |
), |
|
| 172 |
array( |
|
| 173 |
'data' => $derivateHierarchy->hasType? $checked_box_icon:"", |
|
| 174 |
'class' => array('summary_row_cell', 'summary_row_icon')
|
|
| 175 |
), |
|
| 176 |
array( |
|
| 177 |
'data' => $derivateHierarchy->hasSpecimenScan? $checked_box_icon:"", |
|
| 178 |
'class' => array('summary_row_cell', 'summary_row_icon')
|
|
| 179 |
), |
|
| 180 |
array( |
|
| 181 |
'data' => ($derivateHierarchy->hasDna? $sequence_icon :"")." " |
|
| 182 |
.($derivateHierarchy->hasDetailImage?$detail_image_icon:"")." " |
|
| 183 |
.($derivateHierarchy->hasCharacterData?$character_data_icon:""), |
|
| 184 |
'class' => array('summary_row_cell', 'summary_row_icon')
|
|
| 185 |
) |
|
| 186 |
), |
|
| 187 |
'id' => ('derivate_summary' . $rowcount), // summary row id
|
|
| 188 |
'class' => array('summary_row'),
|
|
| 189 |
); |
|
| 190 | 125 |
|
| 191 |
//assemble field unit details |
|
| 192 |
$detail_html = ""; |
|
| 193 |
// - citation |
|
| 194 |
if ($derivateHierarchy->citation) {
|
|
| 195 |
$detail_html .= create_label("Citation") . $derivateHierarchy->citation . "<br>";
|
|
| 196 |
} |
|
| 197 |
//assemble specimen details |
|
| 198 |
if($derivateHierarchy->preservedSpecimenDTOs){
|
|
| 199 |
foreach($derivateHierarchy->preservedSpecimenDTOs as $preservedSpecimenDTO) {
|
|
| 200 |
$detail_html .= "<br>"; |
|
| 201 |
$detail_html .= render_cdm_specimen_page($preservedSpecimenDTO); |
|
| 202 |
} |
|
| 203 |
} |
|
| 204 |
$detail_html .= "<br>"; |
|
| 205 |
//detail row resp. one BIG detail cell |
|
| 206 |
$rows[] = array( |
|
| 207 |
'data' => array( |
|
| 208 |
array( |
|
| 209 |
'data' => "", //empty first column |
|
| 210 |
'class' => array('expand_column')
|
|
| 211 |
), |
|
| 212 |
array( |
|
| 213 |
'data' => $detail_html, |
|
| 214 |
'colspan' => 7, |
|
| 215 |
), |
|
| 216 |
), |
|
| 217 |
'id' => ('derivate_details' . $rowcount),//details row ID
|
|
| 218 |
'class' => array('detail_row'),
|
|
| 219 |
); |
|
| 220 |
$rowcount++; |
|
| 221 |
} |
|
| 222 |
} |
|
| 126 |
$render_array['derivate_hierarchy_table'] = render_derivate_hierarchy_table($field_unit_uuids); |
|
| 223 | 127 |
|
| 224 |
$tableId = "derivate_hierarchy_table"; |
|
| 225 |
$derivateHierarchyTable = array( |
|
| 226 |
"#theme" => "table", |
|
| 227 |
"#weight" => 2, |
|
| 228 |
"#header" => array( |
|
| 229 |
array( |
|
| 230 |
'data' => "", |
|
| 231 |
'class' => array('expand_column')
|
|
| 232 |
), |
|
| 233 |
"Country", "Date", "Collector + collecting number", "Herbaria", "Type", "Scan", "Derivatives"), |
|
| 234 |
"#rows" => $rows, |
|
| 235 |
"#attributes" => array( |
|
| 236 |
"id" => $tableId, |
|
| 237 |
"border" => 2 |
|
| 238 |
) |
|
| 239 |
); |
|
| 240 |
|
|
| 241 |
//add toggle functionality to derivate hierarchy table |
|
| 242 |
drupal_add_js_rowToggle("#".$tableId);
|
|
| 243 |
|
|
| 244 |
$render_array['derivate_hierarchy_table'] = $derivateHierarchyTable; |
|
| 245 |
$render_array['pager'] = markup_to_render_array( |
|
| 246 |
theme('cdm_pager', array(
|
|
| 247 |
'pager' => $pager_field_units, |
|
| 248 |
'path' => $_REQUEST['q'], |
|
| 249 |
'parameters' => $_REQUEST |
|
| 250 |
)), |
|
| 251 |
10 // weight |
|
| 252 |
); |
|
| 253 |
} |
|
| 128 |
$render_array['pager'] = markup_to_render_array( |
|
| 129 |
theme('cdm_pager', array(
|
|
| 130 |
'pager' => $pager_field_units, |
|
| 131 |
'path' => $_REQUEST['q'], |
|
| 132 |
'parameters' => $_REQUEST |
|
| 133 |
)), |
|
| 134 |
10 // weight |
|
| 135 |
); |
|
| 254 | 136 |
} |
| 255 | 137 |
else{
|
| 256 | 138 |
//BOTTOM-UP-SPECIMEN-TABLE |
| ... | ... | |
| 258 | 140 |
$specimen_table = array( |
| 259 | 141 |
'#theme' => 'table', |
| 260 | 142 |
'#weight' => 2, |
| 261 |
// prefix attributes and rows with '#' to let it pass to the theme function, |
|
| 143 |
// prefix attributes and rows with '#' to let it pass toF the theme function,
|
|
| 262 | 144 |
// otherwise it is handled as child render array |
| 263 | 145 |
'#attributes' => array('class' => 'specimens'),
|
| 264 | 146 |
'#rows' => array(), |
| ... | ... | |
| 358 | 240 |
RenderHints::popFromRenderStack(); |
| 359 | 241 |
return $render_array; |
| 360 | 242 |
} |
| 361 |
|
|
| 243 |
|
|
| 244 |
/** |
|
| 245 |
* Creates the drupal render array for the derivate_hierarchy_table |
|
| 246 |
* |
|
| 247 |
* @param $field_unit_uuids array |
|
| 248 |
* An array of uuids for cdm FieldUnit entities. |
|
| 249 |
* |
|
| 250 |
* @return array |
|
| 251 |
* A drupal render array for a table |
|
| 252 |
* |
|
| 253 |
* @ingroup compose |
|
| 254 |
*/ |
|
| 255 |
function compose_derivate_hierarchy_table($field_unit_uuids) |
|
| 256 |
{
|
|
| 257 |
// get icon images |
|
| 258 |
$expand_icon = font_awesome_icon_markup( |
|
| 259 |
'fa-plus-square-o', |
|
| 260 |
array( |
|
| 261 |
'alt' => 'Show details', |
|
| 262 |
'class' => array('expand_icon')
|
|
| 263 |
) |
|
| 264 |
); |
|
| 265 |
$collapse_icon = font_awesome_icon_markup( |
|
| 266 |
'fa-minus-square-o', |
|
| 267 |
array( |
|
| 268 |
'alt' => 'Show details', |
|
| 269 |
'class' => array('collapse_icon')
|
|
| 270 |
) |
|
| 271 |
); |
|
| 272 |
$detail_image_icon = '<img title="Detail Image" src="' . base_path() . drupal_get_path('module', 'cdm_dataportal') . '/images/detail_image_derivate-16x16-32.png' . '"/>';
|
|
| 273 |
$checked_box_icon = '<img src="' . base_path() . drupal_get_path('module', 'cdm_dataportal') . '/images/step_done.gif' . '"/>';
|
|
| 274 |
$sequence_icon = '<img title="Molecular Data" src="' . base_path() . drupal_get_path('module', 'cdm_dataportal') . '/images/sequence_derivate-16x16-32.png' . '"/>';
|
|
| 275 |
$character_data_icon = '<img title="Character Data" src="' . base_path() . drupal_get_path('module', 'cdm_dataportal') . '/images/character_data_derivate-16x16-32.png' . '"/>';
|
|
| 276 |
|
|
| 277 |
$rowcount = 0; |
|
| 278 |
$rows = array(); |
|
| 279 |
|
|
| 280 |
foreach ($field_unit_uuids as $field_unit_uuid) {
|
|
| 281 |
|
|
| 282 |
//get derivate hierarchy for the FieldUnit |
|
| 283 |
$derivateHierarchy = cdm_ws_get(CDM_WS_PORTAL_OCCURRENCE, array($field_unit_uuid, 'derivateHierarchy')); |
|
| 284 |
if ($derivateHierarchy) {
|
|
| 285 |
//summary row |
|
| 286 |
$rows[] = array( |
|
| 287 |
'data' => array( |
|
| 288 |
array( |
|
| 289 |
'data' => $expand_icon . $collapse_icon, |
|
| 290 |
'class' => array('summary_row_cell', 'summary_row_icon', 'expand_column')
|
|
| 291 |
), |
|
| 292 |
array( |
|
| 293 |
'data' => $derivateHierarchy->country, |
|
| 294 |
'class' => array('summary_row_cell')
|
|
| 295 |
), |
|
| 296 |
array( |
|
| 297 |
'data' => $derivateHierarchy->date, |
|
| 298 |
'class' => array('summary_row_cell')
|
|
| 299 |
), |
|
| 300 |
array( |
|
| 301 |
'data' => $derivateHierarchy->collection, |
|
| 302 |
'class' => array('summary_row_cell')
|
|
| 303 |
), |
|
| 304 |
array( |
|
| 305 |
'data' => $derivateHierarchy->herbarium, |
|
| 306 |
'class' => array('summary_row_cell')
|
|
| 307 |
), |
|
| 308 |
array( |
|
| 309 |
'data' => $derivateHierarchy->hasType ? $checked_box_icon : "", |
|
| 310 |
'class' => array('summary_row_cell', 'summary_row_icon')
|
|
| 311 |
), |
|
| 312 |
array( |
|
| 313 |
'data' => $derivateHierarchy->hasSpecimenScan ? $checked_box_icon : "", |
|
| 314 |
'class' => array('summary_row_cell', 'summary_row_icon')
|
|
| 315 |
), |
|
| 316 |
array( |
|
| 317 |
'data' => ($derivateHierarchy->hasDna ? $sequence_icon : "") . " " |
|
| 318 |
. ($derivateHierarchy->hasDetailImage ? $detail_image_icon : "") . " " |
|
| 319 |
. ($derivateHierarchy->hasCharacterData ? $character_data_icon : ""), |
|
| 320 |
'class' => array('summary_row_cell', 'summary_row_icon')
|
|
| 321 |
) |
|
| 322 |
), |
|
| 323 |
'id' => ('derivate_summary' . $rowcount), // summary row id
|
|
| 324 |
'class' => array('summary_row'),
|
|
| 325 |
); |
|
| 326 |
|
|
| 327 |
//assemble field unit details |
|
| 328 |
$detail_html = ""; |
|
| 329 |
// - citation |
|
| 330 |
if ($derivateHierarchy->citation) {
|
|
| 331 |
$detail_html .= create_label("Citation") . $derivateHierarchy->citation . "<br>";
|
|
| 332 |
} |
|
| 333 |
//assemble specimen details |
|
| 334 |
if ($derivateHierarchy->preservedSpecimenDTOs) {
|
|
| 335 |
foreach ($derivateHierarchy->preservedSpecimenDTOs as $preservedSpecimenDTO) {
|
|
| 336 |
$detail_html .= "<br>"; |
|
| 337 |
$detail_html .= render_cdm_specimen_page($preservedSpecimenDTO); |
|
| 338 |
} |
|
| 339 |
} |
|
| 340 |
$detail_html .= "<br>"; |
|
| 341 |
//detail row resp. one BIG detail cell |
|
| 342 |
$rows[] = array( |
|
| 343 |
'data' => array( |
|
| 344 |
array( |
|
| 345 |
'data' => "", //empty first column |
|
| 346 |
'class' => array('expand_column')
|
|
| 347 |
), |
|
| 348 |
array( |
|
| 349 |
'data' => $detail_html, |
|
| 350 |
'colspan' => 7, |
|
| 351 |
), |
|
| 352 |
), |
|
| 353 |
'id' => ('derivate_details' . $rowcount),//details row ID
|
|
| 354 |
'class' => array('detail_row'),
|
|
| 355 |
); |
|
| 356 |
$rowcount++; |
|
| 357 |
} |
|
| 358 |
} |
|
| 359 |
|
|
| 360 |
$tableId = "derivate_hierarchy_table"; |
|
| 361 |
$derivateHierarchyTable = array( |
|
| 362 |
"#theme" => "table", |
|
| 363 |
"#weight" => 2, |
|
| 364 |
"#header" => array( |
|
| 365 |
array( |
|
| 366 |
'data' => "", |
|
| 367 |
'class' => array('expand_column')
|
|
| 368 |
), |
|
| 369 |
"Country", "Date", "Collector + collecting number", "Herbaria", "Type", "Scan", "Derivatives"), |
|
| 370 |
"#rows" => $rows, |
|
| 371 |
"#attributes" => array( |
|
| 372 |
"id" => $tableId, |
|
| 373 |
"border" => 2 |
|
| 374 |
) |
|
| 375 |
); |
|
| 376 |
|
|
| 377 |
//add toggle functionality to derivate hierarchy table |
|
| 378 |
drupal_add_js_rowToggle("#" . $tableId);
|
|
| 379 |
|
|
| 380 |
return $derivateHierarchyTable; |
|
| 381 |
} |
|
| 382 |
|
|
| 362 | 383 |
function create_html_link($link, $openInExternalWindow=false){
|
| 363 | 384 |
$html = ""; |
| 364 | 385 |
if($link->uri && $link->uri!=""){
|
Also available in: Unified diff
ref #7495 extracting derivate_hierarchy_table creating as compose method