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6657531f
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Andreas Kohlbecker
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<?php
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/**
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* @file
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* Module to provide a CDM Dataportal.
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*
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* @copyright
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* (C) 2007-2012 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this module are subject to the Mozilla
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* Public License Version 1.1.
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* @see http://www.mozilla.org/MPL/MPL-1.1.html
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*
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* @author
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* - Andreas Kohlbecker <a.kohlbecker@BGBM.org>
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* - Wouter Addink <w.addink@eti.uva.nl> (migration from Drupal 5 to Drupal7)
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*/
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module_load_include('php', 'cdm_dataportal', 'node_types');
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module_load_include('php', 'cdm_dataportal', 'settings');
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module_load_include('php', 'cdm_dataportal', 'help');
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module_load_include('php', 'cdm_dataportal', 'cdm_dataportal.search');
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4ae6064e
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Andreas Kohlbecker
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module_load_include('inc', 'cdm_dataportal', 'includes/common');
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eeb98da8
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Andreas Kohlbecker
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module_load_include('inc', 'cdm_dataportal', 'includes/pages');
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3eb8fbfb
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Andreas Kohlbecker
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module_load_include('inc', 'cdm_dataportal', 'includes/media');
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f19f47fa
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Andreas Kohlbecker
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module_load_include('inc', 'cdm_dataportal', 'includes/maps');
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module_load_include('inc', 'cdm_dataportal', 'includes/occurrences');
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3445600f
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Andreas Kohlbecker
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module_load_include('inc', 'cdm_dataportal', 'includes/descriptions');
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c4f1eee9
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Andreas Kohlbecker
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module_load_include('inc', 'cdm_dataportal', 'includes/pre-drupal8');
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59f6da42
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Andreas Kohlbecker
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94ab8d4a
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Andreas Kohlbecker
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module_load_include('inc', 'cdm_dataportal', 'theme/theme_registry');
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6657531f
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Andreas Kohlbecker
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module_load_include('theme', 'cdm_dataportal', 'theme/cdm_dataportal.common');
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module_load_include('theme', 'cdm_dataportal', 'theme/cdm_dataportal.descriptions');
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module_load_include('theme', 'cdm_dataportal', 'theme/cdm_dataportal.media');
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module_load_include('theme', 'cdm_dataportal', 'theme/cdm_dataportal.occurrence');
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module_load_include('theme', 'cdm_dataportal', 'theme/cdm_dataportal.page');
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module_load_include('theme', 'cdm_dataportal', 'theme/cdm_dataportal.taxon');
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module_load_include('theme', 'cdm_dataportal', 'theme/cdm_dataportal.name');
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module_load_include('theme', 'cdm_dataportal', 'theme/cdm_dataportal.references');
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module_load_include('php', 'cdm_dataportal', 'classes/footnotemanager');
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module_load_include('php', 'cdm_dataportal', 'classes/footnote');
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module_load_include('php', 'cdm_dataportal', 'classes/footnotekey');
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module_load_include('php', 'cdm_dataportal', 'classes/renderhints');
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94550ff9
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Andreas Kohlbecker
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/* ============================ java script functions ============================= */
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6657531f
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Andreas Kohlbecker
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/**
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* loads external java script files asynchronously.
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*
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* @param unknown_type $script_url
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*/
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function drupal_add_js_async($script_url, $callback){
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drupal_add_js("
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jQuery(document).ready(function() {
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jQuery.ajax({
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url: '" . $script_url . "',
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dataType: 'script',
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cache: true, // otherwise will get fresh copy every page load
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success: function() {
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" . $callback . "
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}
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});
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});"
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, 'inline');
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}
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1ce9afb7
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Patric Plitzner
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/**
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*/
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function drupal_add_js_rowToggle($tableId){
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . '/js/table_modification.js');
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drupal_add_js('jQuery(document).ready(function(){
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addRowToggle("' . $tableId . '");
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});
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', array('type' => 'inline'));
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}
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6657531f
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Andreas Kohlbecker
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/**
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* @param unknown_type $link_element_selector
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* @param unknown_type $progress_element_selector
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*/
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function _add_js_cdm_ws_progressbar($link_element_selector, $progress_element_selector){
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$callback = "jQuery('" . $link_element_selector . "').cdm_ws_progress('" . $progress_element_selector . "');";
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drupal_add_js_async(variable_get('cdm_webservice_url', '').'js/cdm_ws_progress.js', $callback);
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// drupal_add_js("
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// if (Drupal.jsEnabled) {
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// $(document).ready(function() {
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// $('" . $link_element_selector . "').cdm_ws_progress('" . $progress_element_selector . "');
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// });
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// }", 'inline');
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}
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/**
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* @todo Please document this function.
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* @see http://drupal.org/node/1354
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*/
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function _add_js_treeselector() {
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// drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/treeselector.js');
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drupal_add_js("
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jQuery(document).ready(function() {
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jQuery('#cdm-taxonomictree-selector-form #edit-val').change(function () {
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jQuery('#cdm-taxonomictree-selector-form').submit();
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});
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});
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78e178e2
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Andreas Kohlbecker
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",
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array(
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'type' => 'inline',
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'scope' => 'footer'
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)
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);
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6657531f
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Andreas Kohlbecker
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}
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4830dfc9
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Andreas Kohlbecker
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function _add_js_openlayers() {
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6657531f
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Andreas Kohlbecker
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5ea8b301
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Andreas Kohlbecker
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$openlayers = '/js/map/OpenLayers-2.13.1/OpenLayers.js';
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d2fd2a4c
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Andreas Kohlbecker
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$proj4js = '/js/map/proj4js-1.1.0/proj4js-compressed.js';
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5ea8b301
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Andreas Kohlbecker
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if(variable_get('cdm_js_devel_mode', FALSE)){
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// develooper mode libs
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// $openlayers = '/js/map/OpenLayers-2.13.1/lib/OpenLayers.js';
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$openlayers = '/js/map/OpenLayers-2.13.1/OpenLayers.debug.js';
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$proj4js = '/js/map/proj4js-1.1.0/proj4js-combined.js';
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}
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d2fd2a4c
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Andreas Kohlbecker
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . $openlayers,
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array(
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'type' => 'file',
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'weight' => JS_LIBRARY,
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e3026d72
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Andreas Kohlbecker
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'cache' => TRUE,
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10f6aa4b
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Andreas Kohlbecker
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'preprocess' => FALSE
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e3026d72
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Andreas Kohlbecker
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)
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);
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// see https://github.com/proj4js/proj4js
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// http://openlayers.org/dev/examples/using-proj4js.html
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . $proj4js,
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array(
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'type' => 'file',
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'weight' => JS_LIBRARY,
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'cache' => TRUE,
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d2fd2a4c
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Andreas Kohlbecker
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)
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);
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e3026d72
|
Andreas Kohlbecker
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10f6aa4b
|
Andreas Kohlbecker
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// configure the theme
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$openlayers_theme_path = drupal_get_path('module', 'cdm_dataportal') . '/js/map/OpenLayers-2.13.1/theme/default/';
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$openlayers_imp_path = drupal_get_path('module', 'cdm_dataportal') . '/js/map/img/dark/';
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drupal_add_js('OpenLayers.ImgPath="' . base_path() . $openlayers_imp_path . '";', array(
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'type' => 'inline',
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'weight' => JS_LIBRARY,
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'cache' => TRUE,
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'preprocess' => FALSE
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));
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drupal_add_css($openlayers_theme_path . 'style.tidy.css',
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array(
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'type' => 'file',
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'cache' => TRUE,
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'preprocess' => FALSE
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)
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);
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6657531f
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Andreas Kohlbecker
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}
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94550ff9
|
Andreas Kohlbecker
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/**
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* @todo Please document this function.
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* @see http://drupal.org/node/1354
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*/
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function _add_js_thickbox() {
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// ---- jQuery thickbox:
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/*
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* bug: compat-1.0.js && thickbox.js line 237 .trigger("unload") -> event is
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* not triggered because of problems with compat-1.0.js' see INSTALL.txt
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*/
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// drupal_add_js(drupal_get_path('module',
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// 'cdm_dataportal').'/js/jquery.imagetool.min.js');
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//
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// Add a setting for the path to cdm_dataportal module, used to find the path
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// for the loading animation image in thickbox.
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drupal_add_js(array(
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'cdm_dataportal' => array(
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'cdm_dataportal_path' => base_path() . drupal_get_path('module', 'cdm_dataportal'),
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)
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),
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'setting'
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);
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . '/js/thickbox/thickbox.js');
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drupal_add_css(drupal_get_path('module', 'cdm_dataportal') . '/js/thickbox/cdm_thickbox.css');
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}
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/**
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* @todo Please document this function.
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* @see http://drupal.org/node/1354
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*/
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function _add_js_lightbox($galleryID) {
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/*
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* Important Notice: The jquery.lightbox-0.5.js has been modified in order to
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* allow using the "alt" attribute for captions instead of the "title"
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* attribute
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*/
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b386ae48
|
Andreas Kohlbecker
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$lightbox_base_path = drupal_get_path('module', 'cdm_dataportal') . '/js/jquery-lightbox-0.5';
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$lightbox_image_path = base_path() . $lightbox_base_path . '/images/';
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drupal_add_js($lightbox_base_path . '/js/jquery.lightbox-0.5.js');
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drupal_add_css($lightbox_base_path . '/css/jquery.lightbox-0.5.css');
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94550ff9
|
Andreas Kohlbecker
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drupal_add_js('jQuery(document).ready(function() {
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jQuery(\'#' . $galleryID . ' a.lightbox\').lightBox({
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fixedNavigation: true,
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b386ae48
|
Andreas Kohlbecker
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imageLoading: \'' . $lightbox_image_path . 'lightbox-ico-loading.gif\',
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imageBtnPrev: \'' . $lightbox_image_path . 'lightbox-btn-prev.gif\',
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imageBtnNext: \'' . $lightbox_image_path . 'lightbox-btn-next.gif\',
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imageBtnClose: \'' . $lightbox_image_path . 'lightbox-btn-close.gif\',
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imageBlank: \'' . $lightbox_image_path . 'lightbox-blank.gif\',
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94550ff9
|
Andreas Kohlbecker
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adjustToWindow: true
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});
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});
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', array('type' => 'inline'));
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}
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/**
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* @todo Please document this function.
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* @see http://drupal.org/node/1354
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*/
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function _add_js_footnotes() {
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233 |
b386ae48
|
Andreas Kohlbecker
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_add_js_domEvent();
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234 |
94550ff9
|
Andreas Kohlbecker
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . '/js/footnotes.js');
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}
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/**
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* @todo Please document this function.
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* @see http://drupal.org/node/1354
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*/
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function _add_js_cluetip() {
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// TODO replace by
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// @see http://www.socialembedded.com/labs/jQuery-Tooltip-Plugin/jQuery-Tooltip-Plugin.html
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5ea8b301
|
Andreas Kohlbecker
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . '/js/cluetip/jquery.cluetip.min.js');
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246 |
94550ff9
|
Andreas Kohlbecker
|
drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . '/js/jquery.dimensions.js');
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . '/js/cluetip/jquery.hoverIntent.js');
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248 |
5ea8b301
|
Andreas Kohlbecker
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if(variable_get('cdm_js_devel_mode', FALSE)){
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . '/js/cluetip/jquery.cluetip.js');
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}
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251 |
94550ff9
|
Andreas Kohlbecker
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drupal_add_css(drupal_get_path('module', 'cdm_dataportal') . '/js/cluetip/jquery.cluetip.css');
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drupal_add_js("jQuery(document).ready(function(){
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jQuery('.cluetip').css({color: '#0062C2'}).cluetip({
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splitTitle: '|',
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showTitle: true,
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activation: 'hover',
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sicky: true,
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arrows: true,
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dropShadow: false,
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cluetipClass: 'rounded'
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});
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});", array('type' => 'inline'));
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}
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/**
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* @todo Please document this function.
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* @see http://drupal.org/node/1354
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*/
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function _add_js_ahah() {
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270 |
b386ae48
|
Andreas Kohlbecker
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_add_js_domEvent(); // requires domEvent.js
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94550ff9
|
Andreas Kohlbecker
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . '/js/ahah-content.js');
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}
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b386ae48
|
Andreas Kohlbecker
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/**
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* Adds the external javascript file for domEvent.js.
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*
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* @see drupal_add_js()
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*/
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function _add_js_domEvent() {
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drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . '/js/domEvent.js');
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}
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284 |
94550ff9
|
Andreas Kohlbecker
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285 |
6657531f
|
Andreas Kohlbecker
|
/* ====================== hook implementations ====================== */
|
286 |
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/**
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287 |
f19f47fa
|
Andreas Kohlbecker
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* Implements hook_permission().
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288 |
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*
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6657531f
|
Andreas Kohlbecker
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* Valid permissions for this module.
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*
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* @return array
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* An array of valid permissions for the portfolio module.
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|
*/
|
294 |
|
|
function cdm_dataportal_permission() {
|
295 |
|
|
return array(
|
296 |
|
|
'administer cdm_dataportal' => array(
|
297 |
|
|
'title' => t('administer cdm_dataportal'),
|
298 |
|
|
'description' => t("TODO Add a description for 'administer cdm_dataportal'"),
|
299 |
|
|
),
|
300 |
|
|
'cdm_dataportal view notes' => array(
|
301 |
|
|
'title' => t('cdm_dataportal view notes'),
|
302 |
|
|
'description' => t("TODO Add a description for 'cdm_dataportal view notes'"),
|
303 |
|
|
),
|
304 |
|
|
// TODO Which other permissions are required?
|
305 |
|
|
// -> check the WP6 requirements document.
|
306 |
|
|
);
|
307 |
|
|
}
|
308 |
|
|
|
309 |
|
|
/**
|
310 |
f19f47fa
|
Andreas Kohlbecker
|
* Implements hook_menu().
|
311 |
|
|
*/
|
312 |
6657531f
|
Andreas Kohlbecker
|
function cdm_dataportal_menu() {
|
313 |
|
|
$items = array();
|
314 |
|
|
|
315 |
|
|
// @see settings.php.
|
316 |
|
|
cdm_dataportal_menu_admin($items);
|
317 |
|
|
cdm_dataportal_menu_help($items);
|
318 |
|
|
|
319 |
|
|
$items['cdm_dataportal/names'] = array(
|
320 |
|
|
'page callback' => 'cdm_dataportal_view_names',
|
321 |
|
|
'access arguments' => array('access content'),
|
322 |
|
|
'type' => MENU_CALLBACK,
|
323 |
|
|
);
|
324 |
|
|
|
325 |
|
|
// Optional callback arguments: page.
|
326 |
|
|
$items['cdm_dataportal/taxon'] = array(
|
327 |
|
|
'page callback' => 'cdm_dataportal_taxon_page_view',
|
328 |
|
|
'access arguments' => array('access content'),
|
329 |
|
|
'type' => MENU_CALLBACK,
|
330 |
|
|
// Expected callback arguments: uuid.
|
331 |
|
|
);
|
332 |
|
|
|
333 |
|
|
$items['cdm_dataportal/name'] = array(
|
334 |
|
|
'page callback' => 'cdm_dataportal_name_page_view',
|
335 |
|
|
/*
|
336 |
|
|
'page arguments' => array(
|
337 |
|
|
'taxon_name_uuid',
|
338 |
|
|
'taxon_to_hide_uuid',
|
339 |
|
|
'synonym_uuid' => NULL
|
340 |
|
|
),
|
341 |
|
|
*/
|
342 |
|
|
'access arguments' => array('access content'),
|
343 |
|
|
'type' => MENU_CALLBACK,
|
344 |
|
|
// Expected callback arguments: uuid.
|
345 |
|
|
);
|
346 |
|
|
|
347 |
|
|
$items['cdm_dataportal/reference'] = array(
|
348 |
|
|
'page callback' => 'cdm_dataportal_view_reference',
|
349 |
|
|
'access arguments' => array('access content'),
|
350 |
|
|
'type' => MENU_CALLBACK,
|
351 |
|
|
// Expected callback arguments: uuid.
|
352 |
|
|
);
|
353 |
|
|
|
354 |
|
|
$items['cdm_dataportal/reference/list'] = array(
|
355 |
|
|
'page callback' => 'cdm_dataportal_view_reference_list',
|
356 |
|
|
'access arguments' => array('access content'),
|
357 |
|
|
'type' => MENU_CALLBACK,
|
358 |
|
|
// Expected callback arguments: uuid.
|
359 |
|
|
);
|
360 |
|
|
|
361 |
|
|
$items['cdm_dataportal/media'] = array(
|
362 |
|
|
'page callback' => 'cdm_dataportal_view_media',
|
363 |
|
|
'access arguments' => array('access content'),
|
364 |
|
|
'type' => MENU_CALLBACK,
|
365 |
|
|
// Expected callback arguments:
|
366 |
|
|
// uuid, mediarepresentation_uuid, part_uuid or part#.
|
367 |
|
|
);
|
368 |
|
|
|
369 |
|
|
$items['cdm_dataportal/polytomousKey'] = array(
|
370 |
|
|
'page callback' => 'cdm_dataportal_view_polytomousKey',
|
371 |
|
|
'access arguments' => array('access content'),
|
372 |
|
|
'type' => MENU_CALLBACK,
|
373 |
|
|
// Expected callback arguments: polytomousKey->uuid.
|
374 |
|
|
);
|
375 |
|
|
|
376 |
|
|
$items['cdm_dataportal/search'] = array(
|
377 |
|
|
'page callback' => 'cdm_dataportal_view_search_advanced',
|
378 |
|
|
'access arguments' => array('access content'),
|
379 |
|
|
'type' => MENU_CALLBACK,
|
380 |
|
|
);
|
381 |
|
|
|
382 |
|
|
$items['cdm_dataportal/search/advanced'] = array(
|
383 |
|
|
'title' => 'Advanced',
|
384 |
|
|
'page callback' => 'cdm_dataportal_view_search_advanced',
|
385 |
|
|
'access arguments' => array('access content'),
|
386 |
|
|
'type' => MENU_DEFAULT_LOCAL_TASK,
|
387 |
|
|
);
|
388 |
|
|
|
389 |
|
|
$items['cdm_dataportal/search/taxon_by_description'] = array(
|
390 |
|
|
'title' => 'By description full text',
|
391 |
|
|
'page callback' => 'cdm_dataportal_view_search_taxon_by_description',
|
392 |
|
|
'access arguments' => array('access content'),
|
393 |
|
|
'type' => MENU_LOCAL_TASK,
|
394 |
|
|
);
|
395 |
|
|
|
396 |
|
|
$items['cdm_dataportal/search/results/taxon'] = array(
|
397 |
|
|
'page callback' => 'cdm_dataportal_view_search_results_taxon',
|
398 |
|
|
'access arguments' => array('access content'),
|
399 |
|
|
'type' => MENU_CALLBACK,
|
400 |
|
|
);
|
401 |
|
|
/*
|
402 |
|
|
$items['cdm/xml2json'] = array(
|
403 |
|
|
'page callback' => 'cdm_view_xml2json',
|
404 |
|
|
'access arguments' => array('access content'),
|
405 |
|
|
'type' => MENU_CALLBACK,
|
406 |
|
|
);
|
407 |
|
|
*/
|
408 |
|
|
|
409 |
|
|
// if (arg(0)=='user' && ($uid=arg(1)) && is_numeric($uid)) {
|
410 |
|
|
// User configuration of cdm_dataportal.
|
411 |
|
|
$items['user/%/cdm_dataportal'] = array(
|
412 |
|
|
'title' => 'cdm_dataportal',
|
413 |
|
|
'access arguments' => array('access content'),
|
414 |
|
|
'page callback' => 'drupal_get_form',
|
415 |
|
|
'page arguments' => array('cdm_dataportal_user_form'),
|
416 |
|
|
'type' => MENU_LOCAL_TASK,
|
417 |
|
|
'weight' => 10,
|
418 |
|
|
);
|
419 |
|
|
// }
|
420 |
|
|
|
421 |
|
|
// 'May not cache' in D5.
|
422 |
|
|
$items['cdm_dataportal/name/%'] = array(
|
423 |
|
|
// 'page callback' => 'cdm_dataportal_view_name',
|
424 |
|
|
'page callback' => 'cdm_dataportal_name_page_view',
|
425 |
|
|
'page arguments' => array(2, 3, 4),
|
426 |
|
|
'access arguments' => array('access content'),
|
427 |
|
|
'type' => MENU_CALLBACK,
|
428 |
|
|
);
|
429 |
|
|
|
430 |
6f1a217c
|
Andreas Kohlbecker
|
// --- Local tasks for Taxon.
|
431 |
|
|
// --- tabbed taxon page
|
432 |
6657531f
|
Andreas Kohlbecker
|
if (variable_get('cdm_dataportal_taxonpage_tabs', 1)) {
|
433 |
|
|
$items['cdm_dataportal/taxon/%'] = array(
|
434 |
|
|
'title' => theme('cdm_taxonpage_tab', array('tabname' => 'General')),
|
435 |
|
|
'page callback' => 'cdm_dataportal_taxon_page_view',
|
436 |
|
|
'access arguments' => array('access content'),
|
437 |
|
|
'type' => MENU_CALLBACK,
|
438 |
|
|
'weight' => 1,
|
439 |
|
|
'page arguments' => array(2, "description")
|
440 |
|
|
, // Expected callback arguments: name_uuid.
|
441 |
|
|
);
|
442 |
|
|
|
443 |
|
|
$items['cdm_dataportal/taxon/%/all'] = array(
|
444 |
|
|
'title' => theme('cdm_taxonpage_tab', array('tabname' => 'General')),
|
445 |
|
|
'page callback' => 'cdm_dataportal_taxon_page_view',
|
446 |
|
|
'access arguments' => array('access content'),
|
447 |
|
|
'type' => MENU_CALLBACK,
|
448 |
|
|
'weight' => 2,
|
449 |
|
|
'page arguments' => array(2, "all")
|
450 |
|
|
, // Expected callback arguments: name_uuid.
|
451 |
|
|
);
|
452 |
|
|
|
453 |
|
|
$items['cdm_dataportal/taxon/%/description'] = array(
|
454 |
|
|
'title' => theme('cdm_taxonpage_tab', array('tabname' => 'General')),
|
455 |
|
|
'page callback' => 'cdm_dataportal_taxon_page_view',
|
456 |
|
|
'access arguments' => array('access content'),
|
457 |
|
|
'type' => MENU_DEFAULT_LOCAL_TASK,
|
458 |
|
|
'weight' => 2,
|
459 |
|
|
'page arguments' => array(2, "description")
|
460 |
|
|
, // Expected callback arguments: name_uuid.
|
461 |
|
|
);
|
462 |
|
|
|
463 |
|
|
$items['cdm_dataportal/taxon/%/synonymy'] = array(
|
464 |
|
|
'title' => theme('cdm_taxonpage_tab', array('tabname' => 'Synonymy')),
|
465 |
|
|
'page callback' => 'cdm_dataportal_taxon_page_view',
|
466 |
|
|
'access arguments' => array('access content'),
|
467 |
|
|
'type' => MENU_LOCAL_TASK,
|
468 |
|
|
'weight' => 4,
|
469 |
|
|
'page arguments' => array(2, "synonymy", 4)
|
470 |
|
|
, // Expected callback arguments: name_uuid.
|
471 |
|
|
);
|
472 |
|
|
$items['cdm_dataportal/taxon/%/images'] = array(
|
473 |
|
|
'title' => theme('cdm_taxonpage_tab', array('tabname' => 'Images')),
|
474 |
|
|
'page callback' => 'cdm_dataportal_taxon_page_view',
|
475 |
|
|
'access arguments' => array('access content'),
|
476 |
|
|
'type' => MENU_LOCAL_TASK,
|
477 |
|
|
'weight' => 5,
|
478 |
|
|
'page arguments' => array(2, "images")
|
479 |
|
|
, // Expected callback arguments: name_uuid.
|
480 |
|
|
);
|
481 |
|
|
|
482 |
|
|
$items['cdm_dataportal/taxon/%/specimens'] = array(
|
483 |
|
|
'title' => theme('cdm_taxonpage_tab', array('tabname' => 'Specimens')),
|
484 |
|
|
'page callback' => 'cdm_dataportal_taxon_page_view',
|
485 |
|
|
'access arguments' => array('access content'),
|
486 |
|
|
'type' => MENU_LOCAL_TASK,
|
487 |
|
|
'weight' => 6,
|
488 |
|
|
'page arguments' => array(2, "specimens")
|
489 |
|
|
, // Expected callback arguments: name_uuid.
|
490 |
|
|
);
|
491 |
|
|
|
492 |
|
|
$items['cdm_dataportal/taxon/%/keys'] = array(
|
493 |
|
|
'title' => theme('cdm_taxonpage_tab', array('tabname' => 'Keys')),
|
494 |
|
|
'page callback' => 'cdm_dataportal_taxon_page_view',
|
495 |
|
|
'access arguments' => array('access content'),
|
496 |
|
|
'type' => MENU_LOCAL_TASK,
|
497 |
|
|
'weight' => 6,
|
498 |
|
|
'page arguments' => array(2, "keys")
|
499 |
|
|
, // Expected callback arguments: name_uuid.
|
500 |
|
|
);
|
501 |
|
|
}
|
502 |
|
|
|
503 |
6f1a217c
|
Andreas Kohlbecker
|
// --- refresh link for all cdmnode types
|
504 |
|
|
foreach (cdm_get_nodetypes() as $type=>$name) {
|
505 |
|
|
$items['cdm_dataportal/' . $name . '/%/refresh'] = array(
|
506 |
|
|
'title' => t('Refresh'),
|
507 |
|
|
'page callback' => 'cdm_dataportal_refresh_node',
|
508 |
3113db26
|
Andreas Kohlbecker
|
'access arguments' => array('administer cdm_dataportal'),
|
509 |
6f1a217c
|
Andreas Kohlbecker
|
'type' => MENU_LOCAL_TASK,
|
510 |
|
|
'weight' => 100,
|
511 |
|
|
'page arguments' => array($name, 2)
|
512 |
|
|
);
|
513 |
|
|
}
|
514 |
|
|
|
515 |
6657531f
|
Andreas Kohlbecker
|
return $items;
|
516 |
|
|
}
|
517 |
|
|
|
518 |
|
|
/**
|
519 |
b85ab055
|
Andreas Kohlbecker
|
* Implements hook_init().
|
520 |
|
|
*
|
521 |
6657531f
|
Andreas Kohlbecker
|
*/
|
522 |
|
|
function cdm_dataportal_init() {
|
523 |
5ea8b301
|
Andreas Kohlbecker
|
//FIXME To add CSS or JS that should be present on all pages, modules
|
524 |
|
|
// should not implement this hook, but declare these files in their .info file.
|
525 |
6657531f
|
Andreas Kohlbecker
|
drupal_add_css(drupal_get_path('module', 'cdm_dataportal') . '/cdm_dataportal.css');
|
526 |
|
|
// drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/cdm_dataportal_print.css', 'print');
|
527 |
|
|
drupal_add_css(drupal_get_path('module', 'cdm_dataportal') . '/cdm_dataportal_screen.css', array('type' => 'screen'));
|
528 |
2dd59bb5
|
Andreas Kohlbecker
|
|
529 |
|
|
if(variable_get('cdm_debug_mode', FALSE)){
|
530 |
|
|
$file = 'temporary://drupal_debug.txt';
|
531 |
|
|
file_put_contents($file, 'CDM DEBUG LOG for ' . $_GET['q']. "\n"); // will overwrite the file
|
532 |
|
|
}
|
533 |
5611d467
|
Andreas Kohlbecker
|
|
534 |
|
|
$bibliography_settings = get_bibliography_settings();
|
535 |
|
|
if($bibliography_settings['enabled'] == 1){
|
536 |
|
|
FootnoteManager::registerFootnoteSet('BIBLIOGRAPHY', 'div', $bibliography_settings['key_format']);
|
537 |
|
|
}
|
538 |
6657531f
|
Andreas Kohlbecker
|
}
|
539 |
|
|
|
540 |
6f1a217c
|
Andreas Kohlbecker
|
function cdm_dataportal_refresh_node($cdm_node_name, $uuid, $parameters = array()){
|
541 |
|
|
|
542 |
|
|
$base_path = 'cdm_dataportal/' . $cdm_node_name . '/' . $uuid;
|
543 |
|
|
|
544 |
|
|
if($cdm_node_name == 'taxon' && variable_get('cdm_dataportal_taxonpage_tabs', 1)){
|
545 |
|
|
// force reloading of all and notify user about this special loading
|
546 |
|
|
drupal_set_message(t('The level 2 cache has been cleared for all tabs of this taxon page at once, please click here to return to the tabbed page: ')
|
547 |
|
|
. l('Back to tabbed taxon page', $base_path));
|
548 |
|
|
$base_path .= '/all';
|
549 |
|
|
} else {
|
550 |
|
|
drupal_set_message(t('The level 2 cache has been cleared for this page'));
|
551 |
|
|
}
|
552 |
|
|
|
553 |
|
|
$parameters['cacheL2_refresh'] ='1';
|
554 |
|
|
|
555 |
|
|
|
556 |
|
|
drupal_goto($base_path, array('query' => $parameters));
|
557 |
|
|
}
|
558 |
|
|
|
559 |
6657531f
|
Andreas Kohlbecker
|
/**
|
560 |
|
|
* The function generate form for own user cdm dataportal configurations.
|
561 |
|
|
*/
|
562 |
|
|
function cdm_dataportal_user_form($form, &$form_state) {
|
563 |
|
|
global $user;
|
564 |
|
|
$checkbox_value = 'cdm_dataportal_' . $user->uid . '_default_tab_active';
|
565 |
|
|
|
566 |
8e1dc7ec
|
Andreas Kohlbecker
|
$form['taxon_page_tabs'] = array(
|
567 |
|
|
'#type' => 'fieldset',
|
568 |
|
|
'#title' => t('Taxon page tabs'),
|
569 |
|
|
);
|
570 |
|
|
$form['taxon_page_tabs']['check'] = array(
|
571 |
6657531f
|
Andreas Kohlbecker
|
'#type' => 'checkbox',
|
572 |
|
|
'#title' => t('Activate user default configuration'),
|
573 |
|
|
'#default_value' => variable_get($checkbox_value, 0),
|
574 |
|
|
'#description' => t('Check this if you want configure your own default tab from the below menu.'),
|
575 |
|
|
);
|
576 |
|
|
|
577 |
8e1dc7ec
|
Andreas Kohlbecker
|
$form['taxon_page_tabs']['cdm_dataportal_user_form'] = array(
|
578 |
6657531f
|
Andreas Kohlbecker
|
'#type' => 'select',
|
579 |
|
|
'#title' => t('Default tab to display'),
|
580 |
|
|
'#default_value' => get_default_taxon_tab(TRUE),
|
581 |
|
|
'#options' => unserialize(CDM_DATAPORTAL_DEFAULT_TAXON_TAB),
|
582 |
|
|
'#description' => t('<p>Select the default tab to display when visiting a taxon page. Only available if Tabbed Taxon Page is enable.</p>
|
583 |
|
|
<strong>Note:</strong> After performing a search and clicking in any synonym, the taxon tab
|
584 |
|
|
to be renderized will be the synonymy of the accepted taxon and not the above selected tab.'),
|
585 |
|
|
);
|
586 |
|
|
|
587 |
|
|
$form['submit'] = array(
|
588 |
|
|
'#type' => 'submit',
|
589 |
|
|
'#value' => t('Submit'),
|
590 |
|
|
);
|
591 |
|
|
|
592 |
|
|
return $form;
|
593 |
|
|
}
|
594 |
|
|
|
595 |
|
|
/**
|
596 |
|
|
* Form submission handler for user_form().
|
597 |
|
|
*
|
598 |
|
|
* Submits the user cdm dataportal configurations.
|
599 |
|
|
*/
|
600 |
|
|
function cdm_dataportal_user_form_submit($form, &$form_state) {
|
601 |
|
|
global $user;
|
602 |
|
|
$msg_type = 'status';
|
603 |
|
|
$username = $user->name;
|
604 |
|
|
$variable_to_use = 'cdm_dataportal_' . $user->uid . '_default_tab';
|
605 |
|
|
|
606 |
|
|
// If is the right user the variables are setted.
|
607 |
|
|
if (arg(0) == 'user' && ($uid = arg(1)) && is_numeric($uid) && $user->uid == $uid) {
|
608 |
|
|
$variable = unserialize(CDM_DATAPORTAL_DEFAULT_TAXON_TAB);
|
609 |
|
|
variable_set($variable_to_use . '_active', $form_state['values']['check']);
|
610 |
|
|
variable_set($variable_to_use, $form_state['values']['cdm_dataportal_user_form']);
|
611 |
|
|
if ($form_state['values']['check']) {
|
612 |
|
|
drupal_set_message(check_plain(t('The user default tab will be used for the next taxon site visit.')));
|
613 |
|
|
drupal_set_message(check_plain(t('The user default tab has been changed to: !tab for the user !user', array(
|
614 |
|
|
'!tab' => $variable[variable_get($variable_to_use, 0)],
|
615 |
|
|
'!user' => $username,
|
616 |
|
|
))), $msg_type);
|
617 |
|
|
}
|
618 |
|
|
else {
|
619 |
|
|
drupal_set_message(check_plain(t('The user default tab wont be used for
|
620 |
|
|
the next taxon site, check the box if you want to use the user default configuration.')));
|
621 |
|
|
}
|
622 |
|
|
// Problem with the user id => variables wont be saved.
|
623 |
|
|
}
|
624 |
|
|
else {
|
625 |
|
|
$msg_type = 'warning';
|
626 |
|
|
drupal_set_message(check_plain(t('Default tab has not been saved due to user id problems')), $msg_type);
|
627 |
|
|
}
|
628 |
|
|
}
|
629 |
|
|
|
630 |
|
|
/**
|
631 |
|
|
* Implements hook_block_info().
|
632 |
|
|
*/
|
633 |
|
|
function cdm_dataportal_block_info() {
|
634 |
|
|
|
635 |
|
|
// $block[0]["info"] = t("CDM DataPortal DevLinks");
|
636 |
|
|
// $block[1]["info"] = t("CDM DataPortal Credits");
|
637 |
fc13aa30
|
Andreas Kohlbecker
|
$block["2"] = array(
|
638 |
|
|
"info" => t("CDM Search Taxa"),
|
639 |
|
|
"cache" => DRUPAL_NO_CACHE
|
640 |
|
|
);
|
641 |
6657531f
|
Andreas Kohlbecker
|
// $block[3]["info"] = t("CDM Filters");
|
642 |
|
|
$block["4"]["info"] = t("CDM Dataportal Print");
|
643 |
|
|
$block["keys"]["info"] = t("CDM identification keys");
|
644 |
|
|
$block["fundedByEDIT"]["info"] = t('Funded by EDIT');
|
645 |
|
|
|
646 |
|
|
return $block;
|
647 |
|
|
}
|
648 |
|
|
|
649 |
|
|
/**
|
650 |
|
|
* Implements hook_block_view().
|
651 |
|
|
*/
|
652 |
|
|
function cdm_dataportal_block_view($delta) {
|
653 |
|
|
// TODO Rename block deltas (e.g. '2') to readable strings.
|
654 |
|
|
switch ($delta) {
|
655 |
|
|
// case 'delta-1':
|
656 |
|
|
// $block['subject'] = t('Credits');
|
657 |
|
|
// $block['content'] = theme('cdm_credits');
|
658 |
|
|
// return $block;
|
659 |
|
|
case '2':
|
660 |
|
|
$block['subject'] = t('Search taxa');
|
661 |
191f88fd
|
Andreas Kohlbecker
|
$form = drupal_get_form('cdm_dataportal_search_taxon_form');
|
662 |
|
|
$block['content'] = drupal_render($form);
|
663 |
6657531f
|
Andreas Kohlbecker
|
|
664 |
|
|
if (variable_get('cdm_dataportal_show_advanced_search', 1)) {
|
665 |
|
|
$block['content'] .= '<div>' . l(t('Advanced Search'), 'cdm_dataportal/search') . '</div>';
|
666 |
|
|
}
|
667 |
|
|
return $block;
|
668 |
|
|
case '4':
|
669 |
c8234bdf
|
Andreas Kohlbecker
|
$block['subject'] = '';
|
670 |
6657531f
|
Andreas Kohlbecker
|
$block['content'] = theme('cdm_print_button');
|
671 |
|
|
return $block;
|
672 |
|
|
case "keys":
|
673 |
|
|
$block['subject'] = t('Identification Keys');
|
674 |
|
|
$block['content'] = theme('cdm_block_IdentificationKeys', array('taxonUuid' => NULL));
|
675 |
|
|
return $block;
|
676 |
|
|
case "fundedByEDIT":
|
677 |
|
|
// t('Funded by EDIT');
|
678 |
|
|
$text = '<none>';
|
679 |
|
|
$block['subject'] = $text;
|
680 |
d5f0e39e
|
Andreas Kohlbecker
|
$img_tag = '<img src="' . base_path() . drupal_get_path('module', 'cdm_dataportal') . '/images/funded_by_EDIT.png' . '" alt="' . $text . '"/>';
|
681 |
6657531f
|
Andreas Kohlbecker
|
$block['content'] = l($img_tag, "http://www.e-taxonomy.eu/", array(
|
682 |
|
|
'attributes' => array("target" => "EDIT"),
|
683 |
|
|
'absolute' => TRUE,
|
684 |
|
|
'html' => TRUE,
|
685 |
|
|
));
|
686 |
|
|
return $block;
|
687 |
|
|
}
|
688 |
|
|
}
|
689 |
|
|
|
690 |
|
|
/*
|
691 |
|
|
function cdm_dataportal_session_clear($cdm_ws_uri_update = FALSE){
|
692 |
|
|
$_SESSION['cdm'] = NULL;
|
693 |
|
|
if(is_string($cdm_ws_uri_update)){
|
694 |
|
|
$_SESSION['cdm'] = array('ws_uri'=>$cdm_ws_uri_update);
|
695 |
|
|
}
|
696 |
|
|
}
|
697 |
|
|
|
698 |
|
|
function cdm_dataportal_session_validate(){
|
699 |
|
|
if(!isset($_SESSION['cdm']['ws_uri'])){
|
700 |
|
|
$_SESSION['cdm'] = array('ws_uri'=>variable_get('cdm_webservice_url', FALSE));
|
701 |
|
|
} else if($_SESSION['cdm']['ws_uri'] != variable_get('cdm_webservice_url', FALSE)){
|
702 |
|
|
cdm_dataportal_session_clear(variable_get('cdm_webservice_url', FALSE));
|
703 |
|
|
}
|
704 |
|
|
}
|
705 |
|
|
*/
|
706 |
|
|
|
707 |
|
|
/**
|
708 |
d7588d36
|
Andreas Kohlbecker
|
* creates a selector form for taxonomic trees.
|
709 |
|
|
*
|
710 |
|
|
* @return a drupal form array
|
711 |
6657531f
|
Andreas Kohlbecker
|
*/
|
712 |
|
|
function cdm_taxonomictree_selector() {
|
713 |
|
|
_add_js_treeselector();
|
714 |
|
|
|
715 |
a8a8f23c
|
Andreas Kohlbecker
|
$form = drupal_get_form('cdm_taxonomictree_selector_form');
|
716 |
d7588d36
|
Andreas Kohlbecker
|
return $form;
|
717 |
6657531f
|
Andreas Kohlbecker
|
}
|
718 |
|
|
|
719 |
|
|
/**
|
720 |
|
|
* @todo Please document this function.
|
721 |
|
|
* @see http://drupal.org/node/1354
|
722 |
|
|
*/
|
723 |
|
|
function cdm_taxonomictree_selector_form($form, &$form_state) {
|
724 |
|
|
|
725 |
|
|
$url = url('cdm_api/setvalue/session', array('query' => NULL));
|
726 |
|
|
$form['#action'] = $url;
|
727 |
|
|
|
728 |
|
|
$form['var'] = array(
|
729 |
|
|
'#weight' => -3,
|
730 |
|
|
'#type' => 'hidden',
|
731 |
|
|
'#value' => '[cdm][taxonomictree_uuid]',
|
732 |
|
|
);
|
733 |
|
|
|
734 |
|
|
$destination_array = drupal_get_destination();
|
735 |
|
|
$destination = $destination_array['destination'];
|
736 |
|
|
|
737 |
|
|
$form['destination'] = array(
|
738 |
|
|
'#weight' => -3,
|
739 |
|
|
'#type' => 'hidden',
|
740 |
|
|
'#value' => $destination,
|
741 |
|
|
);
|
742 |
|
|
|
743 |
26fb3778
|
Andreas Kohlbecker
|
$options = cdm_get_taxontrees_as_options();
|
744 |
|
|
$taxontree_includes = variable_get(CDM_TAXONTREE_INCLUDES, null);
|
745 |
|
|
if($taxontree_includes){
|
746 |
|
|
$filtered_options = array();
|
747 |
|
|
foreach($options as $uuid=>$label){
|
748 |
|
|
if(!empty($taxontree_includes[$uuid])){
|
749 |
|
|
$filtered_options[$uuid] = $label;
|
750 |
|
|
}
|
751 |
|
|
}
|
752 |
|
|
$options = $filtered_options;
|
753 |
|
|
}
|
754 |
|
|
|
755 |
6657531f
|
Andreas Kohlbecker
|
$form['val'] = array(
|
756 |
|
|
'#type' => 'select',
|
757 |
|
|
'#title' => t('Available classifications'),
|
758 |
|
|
'#default_value' => get_taxonomictree_uuid_selected(),
|
759 |
26fb3778
|
Andreas Kohlbecker
|
'#options' => $options,
|
760 |
088a7028
|
Andreas Kohlbecker
|
'#attributes' => array('class' => array('highlite-first-child'))
|
761 |
6657531f
|
Andreas Kohlbecker
|
);
|
762 |
|
|
|
763 |
|
|
return $form;
|
764 |
|
|
|
765 |
|
|
}
|
766 |
|
|
|
767 |
|
|
/* UNREACHABLE since action of form directly links to view.
|
768 |
|
|
function cdm_dataportal_search_taxon_form_submit($form_id, $form_values) {
|
769 |
|
|
|
770 |
|
|
$_SESSION['cdm']['search'] = $form_values;
|
771 |
|
|
//return '/cdm_dataportal/search/taxon/'.$form_values['queryString'].'/'.($form_values['vernacular']?'1':'0').'/'.$form_values['language'];
|
772 |
|
|
return '/cdm_dataportal/search/taxon/'.$form_values['queryString'].'/'.($form_values['onlyAccepted']?'1':'0');
|
773 |
|
|
//$paramstr = compose_url_prameterstr($form_values);
|
774 |
|
|
//return url('/cdm_dataportal/search/taxon/', array('query' => $paramstr));
|
775 |
|
|
}
|
776 |
|
|
*/
|
777 |
|
|
/* ====================== menu callback functions ====================== */
|
778 |
|
|
/**
|
779 |
|
|
* @todo Please document this function.
|
780 |
|
|
* @see http://drupal.org/node/1354
|
781 |
|
|
*/
|
782 |
|
|
/*
|
783 |
|
|
function cdm_dataportal_form_alter(&$form, &$form_state, $form_id) {
|
784 |
|
|
static $comment_node_disabled = 0;
|
785 |
|
|
static $comment_node_read_only = 1;
|
786 |
|
|
static $comment_node_read_write = 2;
|
787 |
|
|
|
788 |
|
|
if ($form_id == 'node_type_form'
|
789 |
|
|
&& isset($form['identity']['type'])
|
790 |
|
|
&& array_key_exists($form['#node_type']->type, cdm_get_nodetypes())
|
791 |
|
|
) {
|
792 |
|
|
$form['workflow']['comment'] = array(
|
793 |
|
|
'#type' => 'radios',
|
794 |
|
|
'#title' => t('Default comment setting'),
|
795 |
|
|
'#default_value' => variable_get('comment__' . $node->type . $form['#node_type']->type, $comment_node_disabled),
|
796 |
|
|
'#options' => array(t('Disabled'), t('Read only'), t('Read/Write')),
|
797 |
|
|
'#description' => t('Users with the <em>administer comments</em> permission will be able to override this setting.'),
|
798 |
|
|
);
|
799 |
|
|
}
|
800 |
|
|
}
|
801 |
|
|
*/
|
802 |
|
|
|
803 |
|
|
/**
|
804 |
|
|
* Displays a list of the known taxonomic names.
|
805 |
|
|
*
|
806 |
|
|
* When the list of taxonomic names is displayed, long lists are split up into
|
807 |
|
|
* multiple pages.
|
808 |
|
|
*
|
809 |
|
|
* TODO: Parameters are still preliminary.
|
810 |
|
|
*
|
811 |
|
|
* @param string $beginsWith
|
812 |
|
|
* @param string $page
|
813 |
|
|
* Page number to diplay defaults to page 1.
|
814 |
|
|
* @param bool $onlyAccepted
|
815 |
|
|
*/
|
816 |
|
|
function cdm_dataportal_view_names($beginsWith = 'A', $page = 1, $onlyAccepted = FALSE) {
|
817 |
|
|
|
818 |
|
|
$out = t('<h3>Sorry, the name list feature is not yet available in this version of the DataPortal software<h3>');
|
819 |
|
|
|
820 |
|
|
/*
|
821 |
|
|
// FIXME the filter for accepted names will be a form element, thus this
|
822 |
|
|
// widget should be generated via form api preferably as block.
|
823 |
|
|
$out = theme('cdm_dataportal_widget_filter_accepted', $onlyAccepted);
|
824 |
|
|
$out .= theme('cdm_dataportal_widget_names_list', $names, $page);
|
825 |
|
|
$out .= theme('cdm_listof_taxa', $taxonPager);
|
826 |
|
|
return $out;
|
827 |
|
|
*/
|
828 |
|
|
}
|
829 |
|
|
|
830 |
|
|
/**
|
831 |
|
|
* @todo Please document this function.
|
832 |
|
|
* @see http://drupal.org/node/1354
|
833 |
|
|
*/
|
834 |
|
|
function cdm_dataportal_view_reference($uuid, $arg2 = NULL) {
|
835 |
f26245c8
|
Andreas Kohlbecker
|
|
836 |
|
|
cdm_check_valid_portal_page();
|
837 |
|
|
|
838 |
6657531f
|
Andreas Kohlbecker
|
$reference = cdm_ws_get(CDM_WS_REFERENCE, $uuid);
|
839 |
|
|
return theme('cdm_reference_page', array('reference' => $reference));
|
840 |
|
|
}
|
841 |
|
|
|
842 |
|
|
/**
|
843 |
b5dca1e2
|
Andreas Kohlbecker
|
* Created a view on a all references contained in the portal.
|
844 |
|
|
*
|
845 |
|
|
* This function is used at the path cdm_dataportal/reference/list
|
846 |
6657531f
|
Andreas Kohlbecker
|
*/
|
847 |
|
|
function cdm_dataportal_view_reference_list($pageNumber) {
|
848 |
|
|
$referencePager = cdm_ws_page(CDM_WS_REFERENCE, variable_get('cdm_dataportal_search_items_on_page', CDM_DATAPORTAL_SEARCH_ITEMS_ON_PAGE), $pageNumber);
|
849 |
|
|
return theme('cdm_reference_pager', array(
|
850 |
|
|
'referencePager' => $referencePager,
|
851 |
|
|
'path' => 'cdm_dataportal/reference/list/',
|
852 |
|
|
));
|
853 |
|
|
}
|
854 |
|
|
|
855 |
|
|
/**
|
856 |
|
|
* @todo Please document this function.
|
857 |
|
|
* @see http://drupal.org/node/1354
|
858 |
|
|
*/
|
859 |
|
|
function cdm_dataportal_view_media($mediaUuid, $mediarepresentation_uuid = FALSE, $part = 0) {
|
860 |
f26245c8
|
Andreas Kohlbecker
|
|
861 |
|
|
cdm_check_valid_portal_page();
|
862 |
|
|
|
863 |
6657531f
|
Andreas Kohlbecker
|
$media = cdm_ws_get(CDM_WS_PORTAL_MEDIA, $mediaUuid);
|
864 |
|
|
return theme('cdm_media_page', array(
|
865 |
|
|
'media' => $media,
|
866 |
|
|
'mediarepresentation_uuid' => $mediarepresentation_uuid,
|
867 |
|
|
'partId' => $part,
|
868 |
|
|
));
|
869 |
|
|
}
|
870 |
|
|
|
871 |
|
|
/**
|
872 |
|
|
* @todo Please document this function.
|
873 |
|
|
* @see http://drupal.org/node/1354
|
874 |
|
|
*/
|
875 |
|
|
function _load_taxonBase(&$taxonBase) {
|
876 |
|
|
if (isset($taxonBase->uuid)) {
|
877 |
|
|
$taxonBase->name = cdm_ws_get(CDM_WS_TAXON, array($taxonBase->uuid, "name"));
|
878 |
|
|
$taxonBase->name->taggedName = cdm_ws_get(CDM_WS_NAME, array($taxonBase->name->uuid, "taggedName"));
|
879 |
|
|
$taxonBase->name->nomenclaturalReference = cdm_ws_get(CDM_WS_NAME, array($taxonBase->name->uuid, "nomenclaturalReference"));
|
880 |
|
|
}
|
881 |
|
|
}
|
882 |
|
|
|
883 |
9438ad3a
|
Andreas Kohlbecker
|
/**
|
884 |
|
|
* Loads the media associated to the given taxon from the cdm server.
|
885 |
|
|
* The aggregation settings regarding taxon relathionships and
|
886 |
|
|
* taxonnomic childen are taken into account.
|
887 |
|
|
*
|
888 |
|
|
* The media lists are cached in a static variable.
|
889 |
|
|
*
|
890 |
|
|
* @param Taxon $taxon
|
891 |
|
|
* A CDM Taxon entitiy
|
892 |
|
|
*
|
893 |
|
|
* @return array
|
894 |
|
|
* An array of CDM Media entities
|
895 |
|
|
*
|
896 |
|
|
*/
|
897 |
|
|
function _load_media_for_taxon($taxon) {
|
898 |
|
|
|
899 |
|
|
static $media = NULL;
|
900 |
|
|
|
901 |
|
|
if(!isset($media)) {
|
902 |
|
|
$media = array();
|
903 |
|
|
}
|
904 |
|
|
if (!isset($media[$taxon->uuid])) {
|
905 |
|
|
|
906 |
f19f47fa
|
Andreas Kohlbecker
|
// --- GET Images --- //
|
907 |
|
|
$mediaQueryParameters = array(
|
908 |
|
|
"type" => "ImageFile",
|
909 |
|
|
);
|
910 |
|
|
|
911 |
|
|
$relationship_choice = variable_get(CDM_AGGREGATE_BY_TAXON_RELATIONSHIPS, unserialize(CDM_AGGREGATE_BY_TAXON_RELATIONSHIPS_DEFAULT));
|
912 |
|
|
$mediaQueryParameters['relationships'] = implode(',', get_selection($relationship_choice['direct']));
|
913 |
a950f2f9
|
Andreas Kohlbecker
|
$mediaQueryParameters['relationshipsInvers'] = implode(',', get_selection($relationship_choice['invers']));
|
914 |
|
|
|
915 |
|
|
$taxon_media_filter_choice = variable_get(CDM_TAXON_MEDIA_FILTER, unserialize(CDM_TAXON_MEDIA_FILTER_DEFAULT));
|
916 |
|
|
$mediaQueryParameters['includeTaxonDescriptions'] = (boolean) $taxon_media_filter_choice['includeTaxonDescriptions'] != 0;
|
917 |
|
|
$mediaQueryParameters['includeOccurrences'] = (boolean) $taxon_media_filter_choice['includeOccurrences'] != 0;
|
918 |
|
|
$mediaQueryParameters['includeTaxonNameDescriptions'] = (boolean) $taxon_media_filter_choice['includeTaxonNameDescriptions'] != 0;
|
919 |
9438ad3a
|
Andreas Kohlbecker
|
|
920 |
f19f47fa
|
Andreas Kohlbecker
|
$ws_endpoint = NULL;
|
921 |
9438ad3a
|
Andreas Kohlbecker
|
if ( variable_get('cdm_images_include_children', 0) == 0) {
|
922 |
|
|
$ws_endpoint = CDM_WS_PORTAL_TAXON_MEDIA;
|
923 |
|
|
} else {
|
924 |
|
|
$ws_endpoint = CDM_WS_PORTAL_TAXON_SUBTREE_MEDIA;
|
925 |
|
|
}
|
926 |
f19f47fa
|
Andreas Kohlbecker
|
|
927 |
|
|
$media[$taxon->uuid] = cdm_ws_get($ws_endpoint,
|
928 |
|
|
array(
|
929 |
|
|
$taxon->uuid,
|
930 |
|
|
),
|
931 |
9438ad3a
|
Andreas Kohlbecker
|
queryString($mediaQueryParameters)
|
932 |
|
|
);
|
933 |
|
|
}
|
934 |
|
|
|
935 |
|
|
return $media[$taxon->uuid];
|
936 |
|
|
}
|
937 |
|
|
|
938 |
|
|
/**
|
939 |
|
|
*
|
940 |
|
|
* @param Taxon $taxon
|
941 |
|
|
* A CDM Taxon entitiy
|
942 |
|
|
*
|
943 |
|
|
* @return array
|
944 |
|
|
* An array of CDM SpecimenOrObservation entities
|
945 |
|
|
*
|
946 |
|
|
function _load_occurences_for_taxon($taxon){
|
947 |
|
|
|
948 |
|
|
static $occurences = NULL;
|
949 |
f19f47fa
|
Andreas Kohlbecker
|
|
950 |
|
|
if(!isset($occurences)) {
|
951 |
|
|
$occurences = array();
|
952 |
|
|
}
|
953 |
9438ad3a
|
Andreas Kohlbecker
|
|
954 |
|
|
if (!isset($occurences[$taxon->uuid])){
|
955 |
|
|
|
956 |
|
|
$relationship_choice = variable_get(CDM_AGGREGATE_BY_TAXON_RELATIONSHIPS, unserialize(CDM_AGGREGATE_BY_TAXON_RELATIONSHIPS_DEFAULT));
|
957 |
|
|
$relationship_choice['direct'] = get_selection($relationship_choice['direct']);
|
958 |
f19f47fa
|
Andreas Kohlbecker
|
$relationship_choice['invers'] = get_selection($relationship_choice['invers']);
|
959 |
|
|
|
960 |
|
|
$by_associatedtaxon_query = http_build_query(array(
|
961 |
|
|
'relationshipsInvers' => implode(',', $relationship_choice['invers']),
|
962 |
|
|
'relationships' => implode(',', $relationship_choice['direct']),
|
963 |
|
|
'pageSize' => null // all hits in one page
|
964 |
|
|
)
|
965 |
|
|
);
|
966 |
|
|
|
967 |
|
|
$pager = cdm_ws_get(CDM_WS_OCCURRENCE_BY_ASSOCIATEDTAXON,
|
968 |
|
|
null,
|
969 |
|
|
$by_associatedtaxon_query . '&taxonUuid=' . $taxon->uuid
|
970 |
|
|
);
|
971 |
|
|
|
972 |
|
|
|
973 |
|
|
if(isset($pager->records[0])){
|
974 |
|
|
$occurences[$taxon->uuid] = $pager->records;
|
975 |
|
|
}
|
976 |
|
|
}
|
977 |
9438ad3a
|
Andreas Kohlbecker
|
return $occurences[$taxon->uuid];
|
978 |
|
|
}
|
979 |
|
|
*/
|
980 |
|
|
|
981 |
6657531f
|
Andreas Kohlbecker
|
/**
|
982 |
|
|
* Gets a Drupal variable, string or array and returns it.
|
983 |
|
|
*
|
984 |
|
|
* Similar to the variable_get() function of Drupal, except that this function
|
985 |
|
|
* is able to handle arrays correctly. This function is especially useful
|
986 |
|
|
* when dealing with collections of setting form elements (#tree = TRUE).
|
987 |
|
|
*
|
988 |
|
|
* @param string $variableKey
|
989 |
|
|
* The Unique key of the Drupal variable in the Drupal variables table.
|
990 |
|
|
* @param string $defaultValueString
|
991 |
|
|
* A string as for example derived from a CONSTANT.
|
992 |
|
|
*
|
993 |
|
|
* @return mixed
|
994 |
|
|
* Returns usally an array, depending on the nature of the variable.
|
995 |
|
|
*/
|
996 |
|
|
function mixed_variable_get($variableKey, $defaultValueString) {
|
997 |
|
|
$systemDefaults = unserialize($defaultValueString);
|
998 |
|
|
$storedSettings = variable_get($variableKey, array());
|
999 |
|
|
if (is_array($storedSettings)) {
|
1000 |
|
|
$settings = array_merge($systemDefaults, $storedSettings);
|
1001 |
|
|
}
|
1002 |
|
|
else {
|
1003 |
|
|
$settings = $systemDefaults;
|
1004 |
|
|
}
|
1005 |
|
|
return $settings;
|
1006 |
|
|
}
|
1007 |
|
|
|
1008 |
b5519d3a
|
Andreas Kohlbecker
|
/**
|
1009 |
|
|
* Recusive funciton to convert an object into an array.
|
1010 |
|
|
* also subordinate objects will be converted.
|
1011 |
|
|
*
|
1012 |
|
|
* @param object $object
|
1013 |
|
|
* @return the array
|
1014 |
|
|
*/
|
1015 |
|
|
function convert_to_array($object) {
|
1016 |
|
|
if(is_object($object) || is_array($object)) {
|
1017 |
|
|
$array = (array)$object;
|
1018 |
|
|
foreach ($array as $key=>$value){
|
1019 |
|
|
$array[$key] = convert_to_array($value);
|
1020 |
|
|
}
|
1021 |
|
|
return $array;
|
1022 |
|
|
} else {
|
1023 |
|
|
return $object;
|
1024 |
|
|
}
|
1025 |
|
|
}
|
1026 |
|
|
|
1027 |
0a1151a4
|
Andreas Kohlbecker
|
/**
|
1028 |
6f5c7f2a
|
Andreas Kohlbecker
|
* Wraps the given $html string into a render array suitable for drupal_render()
|
1029 |
0a1151a4
|
Andreas Kohlbecker
|
*
|
1030 |
|
|
* @param string $html
|
1031 |
|
|
* the html string, see
|
1032 |
|
|
* http://api.drupal.org/api/drupal/developer!topics!forms_api_reference.html/7#markup
|
1033 |
|
|
* @param number $weight
|
1034 |
|
|
* A positive or negative number (integer or decimal).
|
1035 |
|
|
* see http://api.drupal.org/api/drupal/developer!topics!forms_api_reference.html/7#weightval
|
1036 |
|
|
*
|
1037 |
|
|
* @return
|
1038 |
|
|
* A render array
|
1039 |
|
|
*
|
1040 |
|
|
*/
|
1041 |
6f5c7f2a
|
Andreas Kohlbecker
|
function markup_to_render_array($html, $weight = FALSE) {
|
1042 |
|
|
$render_array = array(
|
1043 |
|
|
'#markup' => $html
|
1044 |
1ce9afb7
|
Patric Plitzner
|
);
|
1045 |
6f5c7f2a
|
Andreas Kohlbecker
|
if (is_numeric($weight)) {
|
1046 |
|
|
$render_array['#weight'] = $weight;
|
1047 |
1ce9afb7
|
Patric Plitzner
|
}
|
1048 |
6f5c7f2a
|
Andreas Kohlbecker
|
return $render_array;
|
1049 |
0a1151a4
|
Andreas Kohlbecker
|
}
|
1050 |
|
|
|
1051 |
6657531f
|
Andreas Kohlbecker
|
/**
|
1052 |
|
|
* Loads the subgraph of a given PolytomousKeyNode.
|
1053 |
|
|
*
|
1054 |
|
|
* Loads the subgraph of the given PolytomousKeyNode recursively from
|
1055 |
|
|
* the CDM REST service.
|
1056 |
|
|
*
|
1057 |
|
|
* @param mixed $polytomousKeyNode
|
1058 |
|
|
* PolytomousKeyNode passed by reference.
|
1059 |
|
|
*
|
1060 |
|
|
* @return void
|
1061 |
|
|
*/
|
1062 |
|
|
function _load_polytomousKeySubGraph(&$polytomousKeyNode) {
|
1063 |
|
|
|
1064 |
|
|
if (!$polytomousKeyNode) {
|
1065 |
|
|
return;
|
1066 |
|
|
}
|
1067 |
|
|
if ($polytomousKeyNode->class != "PolytomousKeyNode") {
|
1068 |
f19f47fa
|
Andreas Kohlbecker
|
drupal_set_message('_load_polytomousKeySubGraph(): ' . t('invalid type given.'), 'error');
|
1069 |
6657531f
|
Andreas Kohlbecker
|
return;
|
1070 |
|
|
}
|
1071 |
|
|
if (!is_uuid($polytomousKeyNode->uuid)) {
|
1072 |
f19f47fa
|
Andreas Kohlbecker
|
drupal_set_message('_load_polytomousKeySubGraph(): ' . t('invalid type given.'), 'error');
|
1073 |
6657531f
|
Andreas Kohlbecker
|
return;
|
1074 |
|
|
}
|
1075 |
|
|
|
1076 |
|
|
$polytomousKeyNode = cdm_ws_get(CDM_WS_POLYTOMOUSKEY_NODE, $polytomousKeyNode->uuid);
|
1077 |
|
|
|
1078 |
|
|
if (!$polytomousKeyNode) {
|
1079 |
|
|
// drupal_set_message("_load_polytomousKeyChildNodes() : could not load polytomousKeyNode", "error");
|
1080 |
|
|
return;
|
1081 |
|
|
}
|
1082 |
|
|
|
1083 |
|
|
// Load children.
|
1084 |
|
|
foreach ($polytomousKeyNode->children as &$childNode) {
|
1085 |
|
|
_load_polytomousKeySubGraph($childNode);
|
1086 |
|
|
}
|
1087 |
|
|
|
1088 |
|
|
// Load subkey.
|
1089 |
|
|
$polytomousKeyNode->subkey = cdm_ws_get(CDM_WS_POLYTOMOUSKEY_NODE, array($polytomousKeyNode->uuid, "subkey"));
|
1090 |
|
|
|
1091 |
|
|
// Load taxon.
|
1092 |
|
|
$polytomousKeyNode->taxon = cdm_ws_get(CDM_WS_POLYTOMOUSKEY_NODE, array($polytomousKeyNode->uuid, "taxon"));
|
1093 |
|
|
_load_taxonBase($polytomousKeyNode->taxon);
|
1094 |
|
|
return;
|
1095 |
|
|
}
|
1096 |
|
|
|
1097 |
|
|
/**
|
1098 |
|
|
* @todo Please document this function.
|
1099 |
|
|
* @see http://drupal.org/node/1354
|
1100 |
|
|
*/
|
1101 |
|
|
function cdm_dataportal_view_polytomousKey($polytomousKeyUuid) {
|
1102 |
f26245c8
|
Andreas Kohlbecker
|
|
1103 |
|
|
cdm_check_valid_portal_page();
|
1104 |
|
|
|
1105 |
6657531f
|
Andreas Kohlbecker
|
$polytomousKey = cdm_ws_get(CDM_WS_POLYTOMOUSKEY, $polytomousKeyUuid);
|
1106 |
|
|
|
1107 |
|
|
$sourcePager = cdm_ws_get(CDM_WS_POLYTOMOUSKEY, array($polytomousKeyUuid, 'sources'));
|
1108 |
|
|
if (is_array($sourcePager->records)) {
|
1109 |
|
|
$polytomousKey->sources = $sourcePager->records;
|
1110 |
|
|
// $polytomousKey->sources->citation = cdm_ws_get(CDM_WS_POLYTOMOUSKEY, array($polytomousKeyUuid, 'sources'));
|
1111 |
|
|
}
|
1112 |
|
|
|
1113 |
|
|
$annotationPager = cdm_ws_get(CDM_WS_POLYTOMOUSKEY, array($polytomousKeyUuid, 'annotations'));
|
1114 |
|
|
if (is_array($annotationPager->records)) {
|
1115 |
|
|
$polytomousKey->annotations = $annotationPager->records;
|
1116 |
|
|
}
|
1117 |
|
|
|
1118 |
|
|
_load_polytomousKeySubGraph($polytomousKey->root);
|
1119 |
|
|
return theme('cdm_polytomousKey_page', array('polytomousKey' => $polytomousKey));
|
1120 |
|
|
}
|
1121 |
|
|
|
1122 |
|
|
/**
|
1123 |
|
|
* Creates a taxon page view or a chapter of it.
|
1124 |
|
|
*
|
1125 |
|
|
* The taxon page gives detailed information on a taxon, it shows:
|
1126 |
|
|
* - Taxon name.
|
1127 |
|
|
* - Full list of synonyms homotypic synonyms on top, followed by the
|
1128 |
|
|
* heterotypic and finally followed by misapplied names.
|
1129 |
|
|
* The list is ordered historically.
|
1130 |
|
|
* - All description associated with the taxon.
|
1131 |
|
|
*
|
1132 |
|
|
* @param string $uuid
|
1133 |
|
|
* @param string $chapter
|
1134 |
|
|
* Name of the part to display, valid values are:
|
1135 |
|
|
* 'description', 'images', 'synonymy', 'specimens', 'all'.
|
1136 |
|
|
*
|
1137 |
|
|
* @return unknown_type
|
1138 |
|
|
*/
|
1139 |
|
|
function cdm_dataportal_taxon_page_view($uuid, $chapter = 'all', $synonym_uuid = NULL) {
|
1140 |
5ea8b301
|
Andreas Kohlbecker
|
|
1141 |
f26245c8
|
Andreas Kohlbecker
|
cdm_check_valid_taxon_page($chapter);
|
1142 |
2dd59bb5
|
Andreas Kohlbecker
|
cdm_dd("START OF TAXON PAGE [" . $chapter . "] " . $uuid . ' for ' . $_GET['q']);
|
1143 |
5ea8b301
|
Andreas Kohlbecker
|
// show a warning in case the javascript development mode is anabled
|
1144 |
|
|
if(variable_get('cdm_js_devel_mode', FALSE)) {
|
1145 |
|
|
drupal_set_message(t('The !url1 is enabled.
|
1146 |
|
|
WARNING: this is a performance penalty and must be turned off on production websites.', array(
|
1147 |
|
|
'!url1' => l('java-script development mode', 'admin/config/cdm_dataportal/settings', array('fragment' => 'edit-cdm-js-devel-mode'))
|
1148 |
|
|
)),
|
1149 |
|
|
'warning'
|
1150 |
|
|
);
|
1151 |
|
|
}
|
1152 |
|
|
|
1153 |
6657531f
|
Andreas Kohlbecker
|
// Display the page for the taxon defined by $uuid.
|
1154 |
|
|
// set_last_taxon_page_tab(arg(3));
|
1155 |
|
|
$taxonpage = cdm_dataportal_taxon_view($uuid, $chapter, $synonym_uuid);
|
1156 |
|
|
if (!empty($taxonpage)) {
|
1157 |
2dd59bb5
|
Andreas Kohlbecker
|
cdm_dd("END OF TAXON PAGE [" . $chapter . "] " . $uuid);
|
1158 |
6657531f
|
Andreas Kohlbecker
|
return cdm_node_show(NODETYPE_TAXON, $uuid, $taxonpage->title, $taxonpage->content);
|
1159 |
|
|
}
|
1160 |
|
|
else {
|
1161 |
2dd59bb5
|
Andreas Kohlbecker
|
cdm_dd("END OF TAXON PAGE [" . $chapter . "] " . $uuid . ' !!! PAGE IS EMPTY !!!');
|
1162 |
6657531f
|
Andreas Kohlbecker
|
return '';
|
1163 |
|
|
}
|
1164 |
|
|
}
|
1165 |
|
|
|
1166 |
|
|
/**
|
1167 |
59f6da42
|
Andreas Kohlbecker
|
* This function will genreate the taxon page part ($chapter) and returns a taxonpage object
|
1168 |
|
|
* which has two fields, one for the page title and one for the content. Later on in the
|
1169 |
|
|
* process chain the value contained in these fields will be passed to the cdm_node_show()
|
1170 |
|
|
* function as the function parameters $title and $content.
|
1171 |
6657531f
|
Andreas Kohlbecker
|
*
|
1172 |
|
|
* @param string $uuid
|
1173 |
59f6da42
|
Andreas Kohlbecker
|
* the uuid of the taxon to show
|
1174 |
6657531f
|
Andreas Kohlbecker
|
* @param string $chapter
|
1175 |
|
|
* Name of the part to display, valid values are:
|
1176 |
|
|
* 'description', 'images', 'synonymy', 'all'.
|
1177 |
|
|
*
|
1178 |
59f6da42
|
Andreas Kohlbecker
|
* @return taxonpage object with the following fields:
|
1179 |
|
|
* - title : the title of the page
|
1180 |
|
|
* - content: the content of the page
|
1181 |
|
|
*
|
1182 |
6657531f
|
Andreas Kohlbecker
|
*/
|
1183 |
8cf9238f
|
Andreas Kohlbecker
|
function cdm_dataportal_taxon_view($uuid, $chapter = 'all') {
|
1184 |
6657531f
|
Andreas Kohlbecker
|
// Taxon object.
|
1185 |
|
|
$taxon = cdm_ws_get(CDM_WS_PORTAL_TAXON, $uuid);
|
1186 |
|
|
if (empty($taxon)) {
|
1187 |
|
|
drupal_set_title(t('Taxon does not exist'), PASS_THROUGH);
|
1188 |
|
|
return FALSE;
|
1189 |
|
|
}
|
1190 |
|
|
$taxonpage = new stdClass();
|
1191 |
|
|
|
1192 |
|
|
$taxonpage->title = theme('cdm_taxon_page_title', array(
|
1193 |
8cf9238f
|
Andreas Kohlbecker
|
'taxon' => $taxon
|
1194 |
6657531f
|
Andreas Kohlbecker
|
));
|
1195 |
|
|
|
1196 |
|
|
// Check if the taxon id contained in the currently selected tree.
|
1197 |
|
|
$taxon_in_current_tree = taxon_in_current_tree($uuid);
|
1198 |
61b6ee11
|
Andreas Kohlbecker
|
|
1199 |
6657531f
|
Andreas Kohlbecker
|
if (!$taxon_in_current_tree) {
|
1200 |
61b6ee11
|
Andreas Kohlbecker
|
$classifications = get_classifications_for_taxon($taxon);
|
1201 |
|
|
if (count($classifications) == 0) {
|
1202 |
50172c55
|
Andreas Kohlbecker
|
drupal_set_message(check_plain(t('This concept of the taxon !taxonname is not contained as an accepted taxon in currently chosen classification.', array(
|
1203 |
6657531f
|
Andreas Kohlbecker
|
'!taxonname' => theme('cdm_taxonName', array('taxonName' => $taxon->name)),
|
1204 |
|
|
))), 'warning');
|
1205 |
|
|
}
|
1206 |
|
|
else {
|
1207 |
|
|
$trees = '';
|
1208 |
61b6ee11
|
Andreas Kohlbecker
|
foreach ($classifications as $classification) {
|
1209 |
|
|
if (isset($classification->titleCache)) {
|
1210 |
|
|
$trees .= ($trees ? ', ' : '') . '<strong>' . $classification->titleCache . '</strong>';
|
1211 |
6657531f
|
Andreas Kohlbecker
|
}
|
1212 |
|
|
}
|
1213 |
|
|
|
1214 |
15b7c460
|
Andreas Kohlbecker
|
drupal_set_message(format_plural(count($trees),
|
1215 |
50172c55
|
Andreas Kohlbecker
|
'This concept of the taxon !taxonname is not contained as an accepted taxon in currently chosen classification, but in this one: !trees',
|
1216 |
|
|
'This concept of the taxon !taxonname is not contained as an accepted taxon in currently chosen classification, but in one of these: !trees',
|
1217 |
6657531f
|
Andreas Kohlbecker
|
array('!taxonname' => theme('cdm_taxonName', array('taxonName' => $taxon->name)), '!trees' => $trees)) , 'warning');
|
1218 |
|
|
}
|
1219 |
|
|
}
|
1220 |
|
|
|
1221 |
|
|
// Render the taxon page.
|
1222 |
9a607f17
|
Andreas Kohlbecker
|
$render_array = compose_cdm_taxon_page($taxon, $chapter);
|
1223 |
|
|
$taxonpage->content = drupal_render($render_array);
|
1224 |
6657531f
|
Andreas Kohlbecker
|
|
1225 |
|
|
return $taxonpage;
|
1226 |
|
|
}
|
1227 |
|
|
|
1228 |
|
|
/**
|
1229 |
|
|
* Returns a name page as a Drupal node ready to be renderized by Drupal.
|
1230 |
|
|
*
|
1231 |
|
|
* The node page shows the taxon name title and the list of taxon related
|
1232 |
|
|
* with such taxon. Name on the tree already in use.
|
1233 |
|
|
*
|
1234 |
51b04faf
|
Andreas Kohlbecker
|
* @param UUID $taxon_name_uuid
|
1235 |
|
|
* The uuid of the CDM TaxonNameBase to show a name page for
|
1236 |
|
|
* @param UUID $taxon_to_hide_uuid
|
1237 |
|
|
* A taxon which should not be displayed in the taxon list
|
1238 |
|
|
* @param UUID $highlite_synonym_uuid
|
1239 |
|
|
* Optinal parameter wich takes another taxon uuid, if given the
|
1240 |
|
|
* target taxon pages will show the syonymy tab where the taxon
|
1241 |
|
|
* refenrenced by the $highlite_synonym_uuid will be highlighted
|
1242 |
|
|
* in case it is found on this page.
|
1243 |
6657531f
|
Andreas Kohlbecker
|
*
|
1244 |
|
|
* @return mixed
|
1245 |
|
|
* The formatted name page as node.
|
1246 |
|
|
*/
|
1247 |
|
|
function cdm_dataportal_name_page_view($taxon_name_uuid, $taxon_to_hide_uuid, $synonym_uuid = NULL) {
|
1248 |
|
|
|
1249 |
f26245c8
|
Andreas Kohlbecker
|
cdm_check_valid_portal_page();
|
1250 |
|
|
|
1251 |
6657531f
|
Andreas Kohlbecker
|
$taxonname_page = cdm_dataportal_name_view($taxon_name_uuid, $taxon_to_hide_uuid, $synonym_uuid);
|
1252 |
|
|
if (!empty($taxonname_page)) {
|
1253 |
|
|
return cdm_node_show(NODETYPE_NAME, $taxon_name_uuid, $taxonname_page->title, $taxonname_page->content);
|
1254 |
|
|
}
|
1255 |
|
|
else {
|
1256 |
|
|
return '';
|
1257 |
|
|
}
|
1258 |
|
|
}
|
1259 |
|
|
|
1260 |
|
|
/**
|
1261 |
e3001c8d
|
Andreas Kohlbecker
|
* View function for a TaxonNameBase page.
|
1262 |
6657531f
|
Andreas Kohlbecker
|
*
|
1263 |
e3001c8d
|
Andreas Kohlbecker
|
* The name page lists all taxa for which the name specified by the
|
1264 |
|
|
* $taxon_name_uuid is being used. I case there is only one name the
|
1265 |
|
|
* page automatically redirects ti the according taxon page. Otherwise
|
1266 |
|
|
* the list of names is displayed.
|
1267 |
6657531f
|
Andreas Kohlbecker
|
*
|
1268 |
e3001c8d
|
Andreas Kohlbecker
|
* The parameter $taxon_to_hide_uuid allows to exclude a taxon from the
|
1269 |
|
|
* list of taxa. This is useful for example when referencing from a taxon
|
1270 |
|
|
* to the name page and the referring taxon should not be repeaded in the
|
1271 |
|
|
* name page.
|
1272 |
6657531f
|
Andreas Kohlbecker
|
*
|
1273 |
e3001c8d
|
Andreas Kohlbecker
|
*
|
1274 |
|
|
* @param UUID $taxon_name_uuid
|
1275 |
|
|
* The uuid of the CDM TaxonNameBase to show a name page for
|
1276 |
|
|
* @param UUID $taxon_to_hide_uuid
|
1277 |
|
|
* A taxon which should not be displayed in the taxon list
|
1278 |
|
|
* @param UUID $highlite_synonym_uuid
|
1279 |
|
|
* Optinal parameter wich takes another taxon uuid, if given the
|
1280 |
|
|
* target taxon pages will show the syonymy tab where the taxon
|
1281 |
|
|
* refenrenced by the $highlite_synonym_uuid will be highlighted
|
1282 |
|
|
* in case it is found on this page.
|
1283 |
|
|
*
|
1284 |
|
|
* @return object
|
1285 |
|
|
* An object with two fields:
|
1286 |
|
|
* - title: the page title
|
1287 |
|
|
* - content: the page content
|
1288 |
6657531f
|
Andreas Kohlbecker
|
*/
|
1289 |
e3001c8d
|
Andreas Kohlbecker
|
function cdm_dataportal_name_view($taxon_name_uuid, $taxon_to_hide_uuid, $highlite_synonym_uuid = NULL) {
|
1290 |
6657531f
|
Andreas Kohlbecker
|
// Getting the full taxonname object from the server.
|
1291 |
|
|
$taxon_name = cdm_ws_get(CDM_WS_NAME, array($taxon_name_uuid));
|
1292 |
|
|
if (!$taxon_name) {
|
1293 |
|
|
drupal_set_title(t('Taxon name does not exist'), PASS_THROUGH);
|
1294 |
|
|
return FALSE;
|
1295 |
|
|
}
|
1296 |
|
|
// Searching for all the taxa connected with the taxon name on the tree
|
1297 |
|
|
// in use.
|
1298 |
|
|
$name_cache = cdm_ws_get(CDM_WS_NAME_NAMECAHE, array($taxon_name_uuid));
|
1299 |
|
|
$request_params = array();
|
1300 |
|
|
$request_params['query'] = $name_cache;
|
1301 |
|
|
$request_params['tree'] = get_taxonomictree_uuid_selected();
|
1302 |
|
|
$request_params['doTaxa'] = 1;
|
1303 |
|
|
$request_params['doSynonyms'] = 1;
|
1304 |
|
|
$request_params['doTaxaByCommonNames'] = 0;
|
1305 |
|
|
$request_params['matchMode'] = "EXACT";
|
1306 |
|
|
$taxon_pager = cdm_ws_get(CDM_WS_PORTAL_TAXON_FIND, NULL, queryString($request_params));
|
1307 |
|
|
|
1308 |
|
|
// Removing the name where we come from.
|
1309 |
|
|
foreach ($taxon_pager->records as $k => &$taxon) {
|
1310 |
|
|
if ($taxon->uuid == $taxon_to_hide_uuid) {
|
1311 |
|
|
unset($taxon_pager->records[$k]);
|
1312 |
|
|
}
|
1313 |
|
|
}
|
1314 |
|
|
// Show the taxa list or go to the singular taxon.
|
1315 |
|
|
if (sizeof($taxon_pager->records) == 1) {// Single taxon case.
|
1316 |
e3001c8d
|
Andreas Kohlbecker
|
$singleTaxon = array_pop($taxon_pager->records);
|
1317 |
6657531f
|
Andreas Kohlbecker
|
if ($singleTaxon->class != "Taxon") {
|
1318 |
|
|
// It is a Synonym -> look for the accepted.
|
1319 |
9c9d11f7
|
Andreas Kohlbecker
|
$accepted_taxa = cdm_ws_get(CDM_WS_PORTAL_TAXON_ACCEPTED, array($singleTaxon->uuid, get_taxonomictree_uuid_selected()));
|
1320 |
e3001c8d
|
Andreas Kohlbecker
|
if (!empty($highlite_synonym_uuid)) {
|
1321 |
f0bf24e7
|
Andreas Kohlbecker
|
drupal_goto('cdm_dataportal/taxon/' . $accepted_taxa[0]->uuid . '/synonymy', array('query' => array('highlite' => $highlite_synonym_uuid)));
|
1322 |
6657531f
|
Andreas Kohlbecker
|
}
|
1323 |
|
|
else {
|
1324 |
f0bf24e7
|
Andreas Kohlbecker
|
drupal_goto('cdm_dataportal/taxon/' . $accepted_taxa[0]->uuid . '/synonymy', array('query' => array('highlite' => $singleTaxon->uuid)));
|
1325 |
6657531f
|
Andreas Kohlbecker
|
}
|
1326 |
|
|
}
|
1327 |
|
|
else {
|
1328 |
|
|
// It is an accepted taxon.
|
1329 |
e3001c8d
|
Andreas Kohlbecker
|
if (!empty($highlite_synonym_uuid)) {
|
1330 |
|
|
drupal_goto('cdm_dataportal/taxon/' . $singleTaxon->uuid . '/synonymy', array('query' => array('highlite' => $highlite_synonym_uuid)));
|
1331 |
6657531f
|
Andreas Kohlbecker
|
}
|
1332 |
|
|
else {
|
1333 |
|
|
drupal_goto('cdm_dataportal/taxon/' . $singleTaxon->uuid);
|
1334 |
|
|
}
|
1335 |
|
|
}
|
1336 |
|
|
}
|
1337 |
|
|
else {// More than one taxa case.
|
1338 |
|
|
$taxon_name_page = new stdClass();
|
1339 |
4f225a0f
|
Andreas Kohlbecker
|
$taxon_name_page->title = theme('cdm_name_page_title', array('taxon_name' => $taxon_name));
|
1340 |
6657531f
|
Andreas Kohlbecker
|
if ($taxon_pager->records) {
|
1341 |
|
|
$taxon_name_page->content = theme_cdm_list_of_taxa($taxon_pager->records, FALSE);
|
1342 |
|
|
}
|
1343 |
|
|
else {
|
1344 |
|
|
$taxon_name_page->content = 'This name has no taxa';
|
1345 |
|
|
}
|
1346 |
|
|
return $taxon_name_page;
|
1347 |
|
|
}
|
1348 |
|
|
}
|
1349 |
|
|
|
1350 |
|
|
/**
|
1351 |
|
|
* @todo Please document this function.
|
1352 |
|
|
* @see http://drupal.org/node/1354
|
1353 |
|
|
*/
|
1354 |
|
|
function cdm_dataportal_view_search_advanced() {
|
1355 |
|
|
|
1356 |
|
|
drupal_set_title(t('Advanced search'), PASS_THROUGH);
|
1357 |
|
|
$form = array();
|
1358 |
|
|
$form_state = array();
|
1359 |
|
|
$searchForm = cdm_dataportal_search_taxon_form($form, $form_state, TRUE);
|
1360 |
|
|
|
1361 |
|
|
return drupal_get_form('cdm_dataportal_search_taxon_form_advanced');
|
1362 |
|
|
|
1363 |
|
|
}
|
1364 |
|
|
|
1365 |
|
|
/**
|
1366 |
|
|
* @todo Please document this function.
|
1367 |
|
|
* @see http://drupal.org/node/1354
|
1368 |
|
|
*/
|
1369 |
|
|
function cdm_dataportal_view_search_taxon_by_description() {
|
1370 |
|
|
drupal_set_title(t('Search by description full text'), PASS_THROUGH);
|
1371 |
|
|
// $form_state = false;
|
1372 |
|
|
// $searchForm = cdm_dataportal_search_taxon_by_description_form($form_state);
|
1373 |
|
|
$searchForm = cdm_dataportal_search_taxon_by_description_form();
|
1374 |
|
|
|
1375 |
|
|
return drupal_get_form('cdm_dataportal_search_taxon_by_description_form');
|
1376 |
|
|
}
|
1377 |
|
|
|
1378 |
|
|
/**
|
1379 |
|
|
* Executes the search and generates the result list of taxa.
|
1380 |
|
|
*/
|
1381 |
|
|
function cdm_dataportal_view_search_results_taxon() {
|
1382 |
|
|
|
1383 |
|
|
$taxonPager = cdm_dataportal_search_execute();
|
1384 |
|
|
|
1385 |
f19f47fa
|
Andreas Kohlbecker
|
$showThumbnails = do_showThumbnails();
|
1386 |
|
|
|
1387 |
|
|
$setSessionUri = url('cdm_api/setvalue/session', array(
|
1388 |
|
|
'query' => array('var' => '[pageoption][searchtaxa][showThumbnails]', 'val' => ''),
|
1389 |
|
|
));
|
1390 |
|
|
|
1391 |
|
|
drupal_add_js('jQuery(document).ready(function() {
|
1392 |
|
|
|
1393 |
|
|
// init
|
1394 |
|
|
if(' . $showThumbnails . ' == 1){
|
1395 |
|
|
jQuery(\'.media_gallery\').show(20);
|
1396 |
|
|
} else {
|
1397 |
|
|
jQuery(\'.media_gallery\').hide(20);
|
1398 |
|
|
}
|
1399 |
|
|
// add change hander
|
1400 |
|
|
jQuery(\'#showThumbnails\').change(
|
1401 |
|
|
function(event){
|
1402 |
|
|
var state = 0;
|
1403 |
|
|
if(jQuery(this).is(\':checked\')){
|
1404 |
|
|
jQuery(\'.media_gallery\').show(20);
|
1405 |
|
|
state = 1;
|
1406 |
|
|
} else {
|
1407 |
|
|
jQuery(\'.media_gallery\').hide(20);
|
1408 |
|
|
}
|
1409 |
|
|
// store state in session variable
|
1410 |
|
|
var uri = \'' . $setSessionUri . '\' + state;
|
1411 |
|
|
jQuery.get(uri);
|
1412 |
|
|
});
|
1413 |
78e178e2
|
Andreas Kohlbecker
|
});',
|
1414 |
f19f47fa
|
Andreas Kohlbecker
|
array('type' => "inline", 'scope' => JS_DEFAULT));
|
1415 |
|
|
|
1416 |
78e178e2
|
Andreas Kohlbecker
|
drupal_set_title(t('Search results'), PASS_THROUGH);
|
1417 |
|
|
|
1418 |
6657531f
|
Andreas Kohlbecker
|
return theme('cdm_search_results', array(
|
1419 |
|
|
'pager' => $taxonPager,
|
1420 |
|
|
'path' => 'cdm_dataportal/search/results/taxon',
|
1421 |
|
|
));
|
1422 |
|
|
}
|
1423 |
|
|
|
1424 |
94550ff9
|
Andreas Kohlbecker
|
/**
|
1425 |
|
|
* Provides the standart image wich indicated a loading process
|
1426 |
|
|
*
|
1427 |
|
|
* @return string
|
1428 |
|
|
* The img html tag
|
1429 |
|
|
*/
|
1430 |
|
|
function loading_image_html() {
|
1431 |
|
|
return '<img class="loading" src="' . base_path() . drupal_get_path('module', 'cdm_dataportal')
|
1432 |
|
|
. '/images/loading_circle_grey_16.gif" style="display:none;">';
|
1433 |
|
|
}
|
1434 |
|
|
|
1435 |
78e178e2
|
Andreas Kohlbecker
|
/**
|
1436 |
|
|
* Returns the state of the the showThumbnails flag set in the
|
1437 |
|
|
* users session ($_SESSION['pageoption']['searchtaxa']['showThumbnails']).
|
1438 |
|
|
*
|
1439 |
c5ed6357
|
Andreas Kohlbecker
|
* @return boolean
|
1440 |
78e178e2
|
Andreas Kohlbecker
|
* returns 1 if the flag is set
|
1441 |
|
|
*/
|
1442 |
|
|
function do_showThumbnails() {
|
1443 |
|
|
static $showThumbnails = null;
|
1444 |
|
|
|
1445 |
|
|
if($showThumbnails == null) {
|
1446 |
c5ed6357
|
Andreas Kohlbecker
|
$showThumbnails = 0;
|
1447 |
|
|
if (!isset($_SESSION['pageoption']['searchtaxa']['showThumbnails'])) {
|
1448 |
|
|
$showThumbnails = 0;
|
1449 |
|
|
$search_gallery_settings = variable_get(CDM_DATAPORTAL_SEARCH_GALLERY_NAME, null);
|
1450 |
|
|
$showThumbnails = is_array($search_gallery_settings)
|
1451 |
|
|
&& isset($search_gallery_settings['cdm_dataportal_show_taxon_thumbnails'])
|
1452 |
|
|
&& (
|
1453 |
|
|
$search_gallery_settings['cdm_dataportal_show_taxon_thumbnails'] +
|
1454 |
|
|
$search_gallery_settings['cdm_dataportal_show_synonym_thumbnails'] +
|
1455 |
|
|
$search_gallery_settings['cdm_dataportal_show_thumbnail_captions'] > 0
|
1456 |
|
|
)
|
1457 |
|
|
? 1 : 0;
|
1458 |
f19f47fa
|
Andreas Kohlbecker
|
|
1459 |
c5ed6357
|
Andreas Kohlbecker
|
drupal_array_set_nested_value($_SESSION, array('pageoption', 'searchtaxa', 'showThumbnails'), $showThumbnails);
|
1460 |
|
|
}
|
1461 |
f19f47fa
|
Andreas Kohlbecker
|
$showThumbnails = $_SESSION['pageoption']['searchtaxa']['showThumbnails'];
|
1462 |
|
|
if (!is_numeric($showThumbnails)) {
|
1463 |
|
|
$showThumbnails = 1;
|
1464 |
|
|
}
|
1465 |
78e178e2
|
Andreas Kohlbecker
|
}
|
1466 |
|
|
|
1467 |
|
|
return $showThumbnails;
|
1468 |
|
|
}
|
1469 |
|
|
|
1470 |
6657531f
|
Andreas Kohlbecker
|
/**
|
1471 |
|
|
* View which transforms XML output from a given webservice endpoint into JSON.
|
1472 |
|
|
*/
|
1473 |
|
|
/*
|
1474 |
|
|
function cdm_view_xml2json(){
|
1475 |
|
|
$file = arg(2);
|
1476 |
|
|
$datastr = file_get_contents(variable_get('cdm_webservice_url', '').$file);
|
1477 |
|
|
return xml2json::transformXmlStringToJson($datastr);
|
1478 |
|
|
}
|
1479 |
|
|
*/
|
1480 |
|
|
|
1481 |
|
|
/* ====================== other functions ====================== */
|
1482 |
|
|
/**
|
1483 |
|
|
* Creates a URL to the taxon page specified by the $uuid parameter.
|
1484 |
|
|
*
|
1485 |
|
|
* The URL will be prepended with a path element to a specific taxon page tab.
|
1486 |
|
|
*
|
1487 |
|
|
* This tab is either taken from the CDM_DATAPORTAL_DEFAULT_TAXON_TAB which can
|
1488 |
|
|
* be set globally in the administrative settings or individually in the user
|
1489 |
|
|
* profile. If the CDM_DATAPORTAL_DEFAULT_TAXON_TAB value is set to LAST_VISITED_TAB
|
1490 |
|
|
* the last portal will stay on this last tab.
|
1491 |
|
|
*
|
1492 |
|
|
* A third option is offerered by the $page_tab parameter which allows overwriting this
|
1493 |
|
|
* internal mechanism by a specific value.
|
1494 |
|
|
*
|
1495 |
|
|
* @param string $uuid
|
1496 |
|
|
* The UUID of the taxon.
|
1497 |
|
|
* @param string $page_tab
|
1498 |
|
|
* Overwriting the preset mechanism by defining specific value for the
|
1499 |
|
|
* taxon page tab.
|
1500 |
|
|
*
|
1501 |
|
|
* @return string
|
1502 |
|
|
* The created URL.
|
1503 |
|
|
*/
|
1504 |
|
|
function path_to_taxon($uuid, $page_tab = FALSE) {
|
1505 |
|
|
|
1506 |
|
|
$tab = get_default_taxon_tab();
|
1507 |
|
|
$values = unserialize(CDM_DATAPORTAL_DEFAULT_TAXON_TAB);
|
1508 |
|
|
|
1509 |
|
|
if (!$uuid) {
|
1510 |
|
|
return FALSE;
|
1511 |
|
|
}
|
1512 |
|
|
|
1513 |
|
|
if ($page_tab) {
|
1514 |
|
|
return 'cdm_dataportal/taxon/' . $uuid . '/' . $page_tab;
|
1515 |
|
|
}
|
1516 |
|
|
elseif (!$tab || strtolower($tab) == 'general') {
|
1517 |
|
|
return 'cdm_dataportal/taxon/' . $uuid;
|
1518 |
|
|
}
|
1519 |
|
|
elseif (get_last_taxon_page_tab() && $tab == $values[CDM_DATAPORTAL_LAST_VISITED_TAB_ARRAY_INDEX]) {
|
1520 |
|
|
return 'cdm_dataportal/taxon/' . $uuid . '/' . get_last_taxon_page_tab();
|
1521 |
|
|
}
|
1522 |
|
|
else {
|
1523 |
|
|
return 'cdm_dataportal/taxon/' . $uuid . '/' . strtolower($tab);
|
1524 |
|
|
}
|
1525 |
|
|
}
|
1526 |
|
|
|
1527 |
|
|
/**
|
1528 |
630c7044
|
Andreas Kohlbecker
|
* Creates a URL to show a synonmy in the according taxon page.
|
1529 |
|
|
*
|
1530 |
|
|
* The URL will point to the synonymy tab of the taxon page of the accepted taxon given as parameter $acceptedUuid.
|
1531 |
|
|
* The resulting URI will include query parameters to highlight the synonym, and to optionally display
|
1532 |
|
|
* the accepted taxons name in aform like "Foo bar is accepted taxon for Ree doo". The URI will also
|
1533 |
|
|
* include the sysnonym uuid as fragment in order to let the browser scroll to the according location
|
1534 |
|
|
* in the page
|
1535 |
|
|
*
|
1536 |
|
|
* @param string $synonymUuid
|
1537 |
|
|
* The uuid of the synonym
|
1538 |
|
|
* @param string $acceptedUuid
|
1539 |
|
|
* The uuid of the according accepted taxon
|
1540 |
|
|
* @return string
|
1541 |
|
|
* The URL to show a synonmy in the according taxon page
|
1542 |
6657531f
|
Andreas Kohlbecker
|
*/
|
1543 |
|
|
function uri_to_synonym($synonymUuid, $acceptedUuid) {
|
1544 |
|
|
$acceptedPath = path_to_taxon($acceptedUuid, "synonymy");
|
1545 |
d071bed7
|
Andreas Kohlbecker
|
return url($acceptedPath, array(
|
1546 |
|
|
'query' => array(
|
1547 |
|
|
// highlite the synony in the synonymy
|
1548 |
|
|
'highlite' => $synonymUuid,
|
1549 |
|
|
// the taxon page is refered from a synonym and the synonym can optionally be named in the page title
|
1550 |
|
|
// see theme_taxon_page_title()
|
1551 |
|
|
'acceptedFor' => $synonymUuid
|
1552 |
630c7044
|
Andreas Kohlbecker
|
),
|
1553 |
|
|
'fragment' => $synonymUuid
|
1554 |
d071bed7
|
Andreas Kohlbecker
|
));
|
1555 |
|
|
|
1556 |
6657531f
|
Andreas Kohlbecker
|
}
|
1557 |
|
|
|
1558 |
|
|
/**
|
1559 |
b8bfa4bd
|
Andreas Kohlbecker
|
* Compses the drupal path to the key identified by the uuid.
|
1560 |
|
|
*
|
1561 |
|
|
* @param string $keyType
|
1562 |
|
|
* the key typer corresponds to the specific class of the CDM
|
1563 |
|
|
* IdentificationKey. Possible values are
|
1564 |
|
|
* -PolytomousKey
|
1565 |
|
|
* -MultimediaKey
|
1566 |
|
|
* - ...
|
1567 |
|
|
* @param UUID $keyUuid
|
1568 |
|
|
* The UUID of the key
|
1569 |
6657531f
|
Andreas Kohlbecker
|
*/
|
1570 |
|
|
function path_to_key($keyType, $keyUuid) {
|
1571 |
|
|
if (!$keyUuid || !$keyType) {
|
1572 |
|
|
return FALSE;
|
1573 |
|
|
}
|
1574 |
|
|
$keyType{0} = strtolower($keyType{0});
|
1575 |
|
|
return "cdm_dataportal/" . $keyType . "/$keyUuid";
|
1576 |
|
|
}
|
1577 |
|
|
|
1578 |
|
|
/**
|
1579 |
|
|
* @todo Please document this function.
|
1580 |
|
|
* @see http://drupal.org/node/1354
|
1581 |
|
|
*/
|
1582 |
|
|
function path_to_reference($uuid) {
|
1583 |
|
|
if (!$uuid) {
|
1584 |
|
|
return FALSE;
|
1585 |
|
|
}
|
1586 |
|
|
return 'cdm_dataportal/reference/' . $uuid;
|
1587 |
|
|
}
|
1588 |
|
|
|
1589 |
|
|
/**
|
1590 |
51b04faf
|
Andreas Kohlbecker
|
* Creates the path to a cdm_dataportal taxon name page.
|
1591 |
|
|
*
|
1592 |
|
|
* @param UUID $taxon_name_uuid
|
1593 |
|
|
* The uuid of the CDM TaxonNameBase to show a name page for
|
1594 |
|
|
* @param UUID $taxon_to_hide_uuid
|
1595 |
|
|
* A taxon which should not be displayed in the taxon list
|
1596 |
|
|
* @param UUID $highlite_synonym_uuid
|
1597 |
|
|
* Optinal parameter wich takes another taxon uuid, if given the
|
1598 |
|
|
* target taxon pages will show the syonymy tab where the taxon
|
1599 |
|
|
* refenrenced by the $highlite_synonym_uuid will be highlighted
|
1600 |
|
|
* in case it is found on this page.
|
1601 |
|
|
*
|
1602 |
|
|
* @return a URI path element as string
|
1603 |
6657531f
|
Andreas Kohlbecker
|
*/
|
1604 |
51b04faf
|
Andreas Kohlbecker
|
function path_to_name($name_uuid, $taxon_to_hide_uuid = NULL, $synonym_uuid = NULL) {
|
1605 |
6657531f
|
Andreas Kohlbecker
|
$res = FALSE;
|
1606 |
|
|
if ($name_uuid) {
|
1607 |
|
|
$res = 'cdm_dataportal/name/' . $name_uuid;
|
1608 |
|
|
}
|
1609 |
51b04faf
|
Andreas Kohlbecker
|
if($taxon_to_hide_uuid){
|
1610 |
|
|
$res .= '/' . $taxon_to_hide_uuid;
|
1611 |
|
|
if($synonym_uuid){
|
1612 |
|
|
$res .= '/' . $synonym_uuid;
|
1613 |
|
|
}
|
1614 |
|
|
}
|
1615 |
6657531f
|
Andreas Kohlbecker
|
return $res;
|
1616 |
|
|
}
|
1617 |
|
|
|
1618 |
|
|
/**
|
1619 |
|
|
* @todo Please document this function.
|
1620 |
|
|
* @see http://drupal.org/node/1354
|
1621 |
|
|
*/
|
1622 |
|
|
function path_to_media($uuid, $representaion_uuid = FALSE, $partId = FALSE) {
|
1623 |
|
|
if (!$uuid) {
|
1624 |
|
|
return FALSE;
|
1625 |
|
|
}
|
1626 |
|
|
$out = 'cdm_dataportal/media/' . $uuid;
|
1627 |
|
|
if ($representaion_uuid) {
|
1628 |
|
|
$out .= '/' . $representaion_uuid;
|
1629 |
|
|
if ($partId !== FALSE) {
|
1630 |
|
|
$out .= '/' . $partId;
|
1631 |
|
|
}
|
1632 |
|
|
}
|
1633 |
|
|
return $out;
|
1634 |
|
|
}
|
1635 |
|
|
|
1636 |
|
|
/**
|
1637 |
|
|
* Compares thisRank with thatRank.
|
1638 |
|
|
*
|
1639 |
|
|
* Returns a negative integer, zero, or a positive integer
|
1640 |
|
|
* as the of thisRank is higher than, equal to, or lower than thatRank.
|
1641 |
|
|
* e.g:
|
1642 |
|
|
* <ul>
|
1643 |
|
|
* <li>rank_compare({species_uuid}, {genus_uuid}) = -1</li>
|
1644 |
|
|
* <li>rank_compare({genus_uuid}, {genus_uuid}) = 0</li>
|
1645 |
|
|
* <li>rank_compare({genus_uuid}, {tribus_uuid}) = 1</li>
|
1646 |
|
|
* </ul>
|
1647 |
|
|
* <p>
|
1648 |
|
|
* This compare logic of the underlying webservice is the
|
1649 |
|
|
* <b>inverse logic</b> of the the one implemented in
|
1650 |
|
|
* java.lang.Comparable#compareTo(java.lang.Object)
|
1651 |
|
|
*
|
1652 |
|
|
* @param $thisRankUuid
|
1653 |
|
|
* @param $thatRankUuid
|
1654 |
|
|
*
|
1655 |
|
|
* @return int
|
1656 |
|
|
* A negative integer, zero, or a positive integer
|
1657 |
|
|
* as the thisRank is lower than, equal to, or higher than thatRank.
|
1658 |
|
|
*/
|
1659 |
|
|
function rank_compare($thisRankUuid, $thatRankUuid) {
|
1660 |
|
|
$result = cdm_ws_get(CDM_WS_TERM_COMPARE, array($thisRankUuid, $thatRankUuid));
|
1661 |
|
|
return $result->Integer;
|
1662 |
|
|
}
|
1663 |
|
|
|
1664 |
|
|
/**
|
1665 |
|
|
* Composes an HTML element class attribute value composed of
|
1666 |
|
|
* the shortname of the cdm class and the uuid of the entity.
|
1667 |
|
|
* This class attribute should be used whereever an cdm-entity is rendered.
|
1668 |
|
|
*
|
1669 |
|
|
* These according class selectors in css must be escaped, eg:
|
1670 |
|
|
* .cdm\:TextData
|
1671 |
|
|
*
|
1672 |
|
|
* @param $cdmEntity
|
1673 |
|
|
*/
|
1674 |
f19f47fa
|
Andreas Kohlbecker
|
function html_class_attribute_ref($cdmEntity) {
|
1675 |
6657531f
|
Andreas Kohlbecker
|
|
1676 |
|
|
if (is_cdm_entity($cdmEntity)) {
|
1677 |
|
|
return "cdm:" . $cdmEntity->class . " uuid:" . $cdmEntity->uuid;
|
1678 |
|
|
}
|
1679 |
|
|
}
|
1680 |
|
|
|
1681 |
|
|
/**
|
1682 |
0f5f1c12
|
Andreas Kohlbecker
|
* Preprocess the taggedName to normalize newly introduced
|
1683 |
|
|
* tagtypes like hybridSign, separator, .. more?
|
1684 |
6657531f
|
Andreas Kohlbecker
|
*
|
1685 |
|
|
* @param unknown_type $taggedTextList
|
1686 |
|
|
*/
|
1687 |
|
|
function normalize_TaggedName(&$taggedTextList) {
|
1688 |
|
|
|
1689 |
|
|
if (is_array($taggedTextList)) {
|
1690 |
|
|
|
1691 |
|
|
// First pass: rename.
|
1692 |
|
|
for ($i = 0; $i < count($taggedTextList); $i++) {
|
1693 |
|
|
|
1694 |
|
|
if ($taggedTextList[$i]->type == "hybridSign") {
|
1695 |
|
|
$taggedTextList[$i]->type = "name";
|
1696 |
|
|
}
|
1697 |
|
|
}
|
1698 |
|
|
|
1699 |
|
|
// Second pass: resolve separators.
|
1700 |
|
|
$taggedNameListNew = array();
|
1701 |
|
|
for ($i = 0; $i < count($taggedTextList); $i++) {
|
1702 |
|
|
|
1703 |
|
|
if ($i + 1 < count($taggedTextList) && $taggedTextList[$i + 1]->type == "separator") {
|
1704 |
|
|
|
1705 |
|
|
if ($taggedTextList[$i]->type == $taggedTextList[$i + 2]->type) {
|
1706 |
|
|
$taggedName = $taggedTextList[$i];
|
1707 |
|
|
$taggedName->text = $taggedName->text . $taggedTextList[$i + 1]->text . $taggedTextList[$i + 2]->text;
|
1708 |
|
|
$taggedNameListNew[] = $taggedName;
|
1709 |
|
|
++$i;
|
1710 |
|
|
++$i;
|
1711 |
|
|
}
|
1712 |
|
|
}
|
1713 |
|
|
else {
|
1714 |
|
|
$taggedNameListNew[] = $taggedTextList[$i];
|
1715 |
|
|
}
|
1716 |
|
|
}
|
1717 |
|
|
$taggedTextList = $taggedNameListNew;
|
1718 |
|
|
}
|
1719 |
|
|
}
|
1720 |
|
|
|
1721 |
|
|
/**
|
1722 |
|
|
* Creates a short taxonname.
|
1723 |
|
|
*
|
1724 |
|
|
* The short name is created by using the taggename field of
|
1725 |
|
|
* NameSTO or NameTO instances.
|
1726 |
|
|
* If the taggename if empty the fullname will be returned.
|
1727 |
|
|
*
|
1728 |
|
|
* @param unknown_type $name
|
1729 |
|
|
* Name or TreeNode.
|
1730 |
|
|
*
|
1731 |
|
|
* @return string
|
1732 |
|
|
*/
|
1733 |
|
|
function cdm_dataportal_shortname_of($name) {
|
1734 |
|
|
$nameStr = '';
|
1735 |
|
|
|
1736 |
|
|
normalize_TaggedName($name->taggedTitle);
|
1737 |
|
|
|
1738 |
|
|
// Get all tagged text tokens of the scientific name.
|
1739 |
|
|
foreach ($name->taggedTitle as $tagtxt) {
|
1740 |
|
|
if ($tagtxt->type == 'name' || $tagtxt->type == 'rank') {
|
1741 |
|
|
$nameStr .= ($nameStr ? ' ' : '') . $tagtxt->text;
|
1742 |
|
|
}
|
1743 |
|
|
}
|
1744 |
|
|
$nameStr = trim($nameStr);
|
1745 |
|
|
|
1746 |
|
|
if ($nameStr) {
|
1747 |
|
|
|
1748 |
|
|
// Do not return short names for these.
|
1749 |
|
|
if ($name->unplaced || $name->excluded) {
|
1750 |
|
|
return $nameStr;
|
1751 |
|
|
}
|
1752 |
|
|
|
1753 |
|
|
/*
|
1754 |
|
|
1st capture group (^[a-zA-Z]): First letter of uninomial.
|
1755 |
|
|
Second capture group ([\p{L}]+): remaining letters of uninomial ([\p{L} = an UTF-8 letter).
|
1756 |
|
|
Third capture group (\s+[^(\x2E]+\s+.+$|\s+[a-zA-Z]+$): letters of name,
|
1757 |
|
|
but only matching if no '(' or '.' in second word of name, ( \x2E = '.')
|
1758 |
|
|
OR only one specific epithet \s+[\p{L}\x22\x2D\xD7]+$ (\x22= '"', \x2D='-', \xD7='×' )
|
1759 |
|
|
*/
|
1760 |
|
|
$pattern = '/(^[a-zA-Z])([\p{L}]+)(\s+[^(\x2E]+\s+.+$|\s+[\p{L}\x22\x2D\xD7]+$)/u';
|
1761 |
|
|
if (preg_match($pattern, $nameStr, $matches, PREG_OFFSET_CAPTURE)) {
|
1762 |
|
|
return $matches[1][0] . "." . $matches[3][0];
|
1763 |
|
|
}
|
1764 |
|
|
else {
|
1765 |
|
|
return $nameStr;
|
1766 |
|
|
}
|
1767 |
|
|
}
|
1768 |
|
|
else {
|
1769 |
|
|
return $name->titleCache;
|
1770 |
|
|
}
|
1771 |
|
|
}
|
1772 |
|
|
|
1773 |
|
|
/**
|
1774 |
|
|
* Check if a taxon is accepted by the current taxonomic tree.
|
1775 |
|
|
*
|
1776 |
|
|
* @param mixed $taxon
|
1777 |
|
|
* The Taxon obkect to check.
|
1778 |
|
|
*
|
1779 |
|
|
* @return bool
|
1780 |
|
|
* Returns TRUE if $taxon is accepted, FALSE otherwise.
|
1781 |
|
|
*/
|
1782 |
|
|
function _cdm_dataportal_acceptedByCurrentView($taxon) {
|
1783 |
|
|
|
1784 |
|
|
$defaultTreeUuid = get_taxonomictree_uuid_selected();
|
1785 |
|
|
|
1786 |
|
|
if (isset($taxon->taxonNodes)) {
|
1787 |
|
|
$taxonNodes = $taxon->taxonNodes;
|
1788 |
|
|
}
|
1789 |
|
|
else {
|
1790 |
|
|
$taxonNodes = cdm_ws_get(CDM_WS_PORTAL_TAXON_TAXONNODES, $taxon->uuid);
|
1791 |
|
|
}
|
1792 |
|
|
|
1793 |
|
|
if ($taxon->class == "Taxon" && isset($taxonNodes)) {
|
1794 |
|
|
foreach ($taxonNodes as $node) {
|
1795 |
586fc780
|
Andreas Kohlbecker
|
if (isset($node->classification)){
|
1796 |
|
|
if(is_object($node->classification)) {
|
1797 |
|
|
if ($node->classification->uuid == $defaultTreeUuid) {
|
1798 |
|
|
return TRUE;
|
1799 |
|
|
}
|
1800 |
6657531f
|
Andreas Kohlbecker
|
}
|
1801 |
586fc780
|
Andreas Kohlbecker
|
else {
|
1802 |
|
|
if ($node->classification == $defaultTreeUuid) {
|
1803 |
|
|
return TRUE;
|
1804 |
|
|
}
|
1805 |
6657531f
|
Andreas Kohlbecker
|
}
|
1806 |
|
|
}
|
1807 |
|
|
}
|
1808 |
|
|
}
|
1809 |
|
|
|
1810 |
|
|
return FALSE;
|
1811 |
|
|
}
|
1812 |
|
|
|
1813 |
|
|
/**
|
1814 |
|
|
* Workaround for missing original source type.
|
1815 |
|
|
*
|
1816 |
|
|
* idNamespace is always set in these cases.
|
1817 |
|
|
* @todo improve documentation of this function.
|
1818 |
|
|
*
|
1819 |
|
|
* @param unknown_type $source
|
1820 |
|
|
*
|
1821 |
|
|
* @return unknown_type
|
1822 |
|
|
*/
|
1823 |
|
|
function _is_original_source_type($source) {
|
1824 |
|
|
return !$source->idNamespace && strlen($source->idNamespace) == 0;
|
1825 |
|
|
}
|
1826 |
|
|
|
1827 |
|
|
/**
|
1828 |
|
|
* @todo Please document this function.
|
1829 |
|
|
* @see http://drupal.org/node/1354
|
1830 |
|
|
*/
|
1831 |
|
|
function _is_invers_taxonRelationship($taxonRelationship, $focusedTaxon) {
|
1832 |
|
|
return $taxonRelationship->toTaxon->uuid == $focusedTaxon->uuid;
|
1833 |
|
|
}
|
1834 |
|
|
|
1835 |
|
|
/**
|
1836 |
|
|
* Gets the metadata info such as title or artist of a media file.
|
1837 |
|
|
*
|
1838 |
|
|
* The function tries at first to get all the info from the file metadata
|
1839 |
|
|
* and if it is not avaible look at the media file info stored at the database.
|
1840 |
|
|
*
|
1841 |
|
|
* @param mixed $media
|
1842 |
|
|
* The media file object for which to get the metadata.
|
1843 |
|
|
*
|
1844 |
|
|
* @return array
|
1845 |
|
|
* The array with the available specified metadata info.
|
1846 |
|
|
* TODO rename to read_media_metadata() and move to *.module.
|
1847 |
|
|
*/
|
1848 |
|
|
function cdm_read_media_metadata($media) {
|
1849 |
|
|
|
1850 |
|
|
$metadata_caption = array(
|
1851 |
|
|
'title' => '',// Media_metadata and media.
|
1852 |
f19f47fa
|
Andreas Kohlbecker
|
'artist' => '',// Media_metadata and media.
|
1853 |
|
|
'rights',// Media_metadata and media.
|
1854 |
|
|
'location',// Media_metadata.
|
1855 |
6657531f
|
Andreas Kohlbecker
|
'filename' => '',// Media.
|
1856 |
|
|
'mediacreated' => '',// Media.
|
1857 |
|
|
'description' => '',
|
1858 |
|
|
);// Media.
|
1859 |
|
|
|
1860 |
|
|
// Getting the media metadata.
|
1861 |
|
|
$media_metadata = cdm_ws_get(CDM_WS_MEDIA_METADATA, array($media->uuid));
|
1862 |
|
|
$media_metadata_aux = (array) $media_metadata;
|
1863 |
|
|
|
1864 |
|
|
// Filename.
|
1865 |
4830dfc9
|
Andreas Kohlbecker
|
if (!empty($media->representations[0]->parts[0]->uri)) {
|
1866 |
6657531f
|
Andreas Kohlbecker
|
$fileUri = $media->representations[0]->parts[0]->uri;
|
1867 |
|
|
$filename = substr($fileUri, strrpos($fileUri, "/") + 1);
|
1868 |
|
|
$metadata_caption['filename'] = $filename;
|
1869 |
|
|
}
|
1870 |
|
|
else {
|
1871 |
|
|
$metadata_caption['filename'] = '';
|
1872 |
|
|
}
|
1873 |
|
|
|
1874 |
|
|
// Title.
|
1875 |
|
|
if (!empty($media_metadata->ObjectName)) {
|
1876 |
|
|
$metadata_caption['title'] = $media_metadata->ObjectName;
|
1877 |
|
|
}
|
1878 |
4830dfc9
|
Andreas Kohlbecker
|
elseif (!empty($media_metadata_aux['Object Name'])) {
|
1879 |
6657531f
|
Andreas Kohlbecker
|
$metadata_caption['title'] = $media_metadata_aux['Object Name'];
|
1880 |
|
|
}
|
1881 |
4830dfc9
|
Andreas Kohlbecker
|
elseif (!empty($media->title_L10n)) {
|
1882 |
6657531f
|
Andreas Kohlbecker
|
$metadata_caption['title'] = $media->title_L10n;
|
1883 |
|
|
}
|
1884 |
4830dfc9
|
Andreas Kohlbecker
|
elseif (!empty($media->titleCache)) {
|
1885 |
6657531f
|
Andreas Kohlbecker
|
$metadata_caption['title'] = $media->titleCache;
|
1886 |
|
|
}
|
1887 |
|
|
|
1888 |
|
|
// Append description to title.
|
1889 |
|
|
if (!empty($media->description_L10n)) {
|
1890 |
|
|
$metadata_caption['title'] .= '<span class="media-description">' . $media->description_L10n . '<span>';
|
1891 |
|
|
}
|
1892 |
|
|
|
1893 |
|
|
// Artist.
|
1894 |
ffc86672
|
Andreas Kohlbecker
|
if (!empty($media_metadata->Artist)) {
|
1895 |
|
|
$metadata_caption['artist'] = '' . $media_metadata->Artist;
|
1896 |
6657531f
|
Andreas Kohlbecker
|
}
|
1897 |
4830dfc9
|
Andreas Kohlbecker
|
elseif (!empty($media->artist->titleCache)) {
|
1898 |
6657531f
|
Andreas Kohlbecker
|
$metadata_caption['artist'] = $media->artist->titleCache;
|
1899 |
|
|
}
|
1900 |
|
|
|
1901 |
|
|
// Copyright.
|
1902 |
|
|
$metadata_caption['rights'] = array(
|
1903 |
|
|
'copyright' => array('agentNames' => array()),
|
1904 |
|
|
'license' => array(
|
1905 |
|
|
'agentNames' => array(),
|
1906 |
|
|
'types' => array(),
|
1907 |
|
|
'abbreviatedTexts' => array(),
|
1908 |
|
|
'uris' => array(),
|
1909 |
|
|
),
|
1910 |
|
|
);
|
1911 |
4830dfc9
|
Andreas Kohlbecker
|
if (!empty($media_metadata->Copyright)) {
|
1912 |
6657531f
|
Andreas Kohlbecker
|
$metadata_caption['rights']['copyright']['agentNames'][] = $media_metadata->Copyright;
|
1913 |
|
|
}
|
1914 |
|
|
elseif (isset($media->rights) && is_array($media->rights)) {
|
1915 |
|
|
foreach ($media->rights as $right) {
|
1916 |
593c7c7b
|
Andreas Kohlbecker
|
if(isset($right->term)){
|
1917 |
8aaf1e47
|
Patric Plitzner
|
switch ($right->type->uuid) {
|
1918 |
593c7c7b
|
Andreas Kohlbecker
|
case UUID_RIGHTS_LICENCE:
|
1919 |
|
|
$metadata_caption['rights']['license']['agentNames'][] = ($right->agent ? '' . $right->agent->firstname . ' ' . $right->agent->lastname : '');
|
1920 |
|
|
$metadata_caption['rights']['license']['types'][] = ($right->representation_L10n ? '' . $right->representation_L10n : '');
|
1921 |
|
|
$metadata_caption['rights']['license']['abbreviatedTexts'][] = ($right->abbreviatedText ? '' . $right->abbreviatedText : '');
|
1922 |
|
|
$metadata_caption['rights']['license']['uris'][] = ($right->uri ? '' . $right->uri : '');
|
1923 |
|
|
break;
|
1924 |
|
|
case UUID_RIGHTS_COPYRIGHT:
|
1925 |
|
|
$metadata_caption['rights']['copyright']['agentNames'][] = $right->agent->firstname . ' ' . $right->agent->lastname;
|
1926 |
|
|
break;
|
1927 |
|
|
}
|
1928 |
6657531f
|
Andreas Kohlbecker
|
}
|
1929 |
|
|
}
|
1930 |
|
|
}
|
1931 |
|
|
else {
|
1932 |
|
|
$metadata_caption['rights']['agentNames'][] = '';
|
1933 |
|
|
}
|
1934 |
|
|
|
1935 |
|
|
// Filling the description (though there is no description in the db???).
|
1936 |
|
|
// $metadata_caption['description'] = $media->description_L10n;
|
1937 |
|
|
|
1938 |
|
|
// Location.
|
1939 |
|
|
$metadata_caption['location'] = array();
|
1940 |
|
|
$metadata_caption['location']['sublocation'] = !empty($media_metadata->Sublocation) ? $media_metadata->Sublocation : FALSE;
|
1941 |
|
|
$metadata_caption['location']['city'] = !empty($media_metadata->City) ? $media_metadata->City : FALSE;
|
1942 |
|
|
$metadata_caption['location']['province'] = !empty($media_metadata->Province) ? $media_metadata->Province : FALSE;
|
1943 |
|
|
$metadata_caption['location']['country'] = !empty($media_metadata->Country)? $media_metadata->Country : FALSE;
|
1944 |
|
|
|
1945 |
|
|
/*
|
1946 |
|
|
// Creation date.
|
1947 |
|
|
if($media_metadata["Modify Date"])
|
1948 |
|
|
$metadata_caption['mediacreated'] = $media_metadata["Modify Date"];
|
1949 |
|
|
else
|
1950 |
|
|
$metadata_caption['mediacreated'] = $media->created;
|
1951 |
|
|
*/
|
1952 |
|
|
|
1953 |
|
|
// Returned value.
|
1954 |
|
|
return $metadata_caption;
|
1955 |
|
|
}
|
1956 |
|
|
|
1957 |
|
|
/**
|
1958 |
|
|
* Collects all the media from a list of description elements.
|
1959 |
|
|
*
|
1960 |
|
|
* @param array $descriptionElements
|
1961 |
|
|
* The description elements from which to collect the media.
|
1962 |
|
|
*
|
1963 |
|
|
* @return array
|
1964 |
|
|
* The output with all the collected media.
|
1965 |
|
|
*/
|
1966 |
|
|
function cdm_dataportal_media_from_descriptionElements($descriptionElements) {
|
1967 |
|
|
|
1968 |
|
|
$outArrayOfMedia = array();
|
1969 |
|
|
|
1970 |
|
|
// Avoiding a warning box in Drupal for Flora Malesiana.
|
1971 |
|
|
if (isset($descriptionElements) && is_array($descriptionElements)) {
|
1972 |
|
|
foreach ($descriptionElements as $descriptionElement) {
|
1973 |
|
|
if (isset($descriptionElement->media) && is_array($descriptionElement->media)) {
|
1974 |
|
|
foreach ($descriptionElement->media as $media) {
|
1975 |
|
|
if (is_object($media)) {
|
1976 |
|
|
$outArrayOfMedia[] = $media;
|
1977 |
|
|
}
|
1978 |
|
|
}
|
1979 |
|
|
}
|
1980 |
|
|
}
|
1981 |
|
|
}
|
1982 |
|
|
return $outArrayOfMedia;
|
1983 |
|
|
}
|
1984 |
|
|
|
1985 |
|
|
/**
|
1986 |
|
|
* @todo Please document this function.
|
1987 |
|
|
* @see http://drupal.org/node/1354
|
1988 |
|
|
*
|
1989 |
|
|
* @param array $cdmBase_list
|
1990 |
|
|
* An array of CdmBase instances or a single instance.
|
1991 |
28c5c87a
|
Andreas Kohlbecker
|
* @param string $footnote_list_key_suggestion
|
1992 |
6657531f
|
Andreas Kohlbecker
|
*
|
1993 |
|
|
* @return unknown
|
1994 |
|
|
*/
|
1995 |
28c5c87a
|
Andreas Kohlbecker
|
function cdm_annotations_as_footnotekeys($cdmBase_list, $footnote_list_key_suggestion = NULL) {
|
1996 |
90597e37
|
Andreas Kohlbecker
|
|
1997 |
|
|
static $annotations_types_filter = null;
|
1998 |
6657531f
|
Andreas Kohlbecker
|
if(!$annotations_types_filter) {
|
1999 |
90597e37
|
Andreas Kohlbecker
|
$annotations_types_filter = unserialize(ANNOTATIONS_TYPES_AS_FOOTNOTES_DEFAULT);
|
2000 |
6657531f
|
Andreas Kohlbecker
|
}
|
2001 |
|
|
|
2002 |
|
|
$footNoteKeys = array();
|
2003 |
|
|
|
2004 |
|
|
// Is argument cdmBase an array?
|
2005 |
|
|
if (!is_array($cdmBase_list)) {
|
2006 |
|
|
$cdmBase_array = array();
|
2007 |
|
|
$cdmBase_array[] = $cdmBase_list;
|
2008 |
|
|
}
|
2009 |
|
|
else {
|
2010 |
|
|
$cdmBase_array = $cdmBase_list;
|
2011 |
|
|
}
|
2012 |
|
|
|
2013 |
|
|
// Getting the key for the footnotemanager.
|
2014 |
28c5c87a
|
Andreas Kohlbecker
|
if (isset($footnote_list_key_suggestion)) {
|
2015 |
|
|
$footnote_list_key = $footnote_list_key_suggestion;
|
2016 |
6657531f
|
Andreas Kohlbecker
|
}
|
2017 |
|
|
else {
|
2018 |
28c5c87a
|
Andreas Kohlbecker
|
$footnote_list_key = RenderHints::getFootnoteListKey() . '-annotations';
|
2019 |
6657531f
|
Andreas Kohlbecker
|
}
|
2020 |
|
|
|
2021 |
|
|
// Adding the footnotes keys.
|
2022 |
|
|
foreach ($cdmBase_array as $cdmBase_element) {
|
2023 |
|
|
$annotations = cdm_ws_getAnnotationsFor($cdmBase_element, variable_get('annotations_types_as_footnotes', $annotations_types_filter));
|
2024 |
|
|
if (is_array($annotations)) {
|
2025 |
|
|
foreach ($annotations as $annotation) {
|
2026 |
28c5c87a
|
Andreas Kohlbecker
|
$footNoteKeys[] = FootnoteManager::addNewFootnote($footnote_list_key, $annotation->text);
|
2027 |
6657531f
|
Andreas Kohlbecker
|
}
|
2028 |
|
|
}
|
2029 |
|
|
}
|
2030 |
|
|
|
2031 |
|
|
return $footNoteKeys;
|
2032 |
|
|
}
|
2033 |
|
|
|
2034 |
|
|
// @WA Comment: should this not be a theme function?
|
2035 |
|
|
/**
|
2036 |
|
|
* Creates a CDM Dynabox.
|
2037 |
c1f5d897
|
Andreas Kohlbecker
|
* @param string $dynabox_id
|
2038 |
9c9d11f7
|
Andreas Kohlbecker
|
* a uninque name for tha dynabox, using a cdm entity uuid herefore is good pratice.
|
2039 |
6657531f
|
Andreas Kohlbecker
|
* @param string $label
|
2040 |
|
|
* The clickable text to show.
|
2041 |
|
|
* @param string $content_url
|
2042 |
|
|
* The cdm REST service request url wich will deliver the content to be shown
|
2043 |
|
|
* once the dynabox toggles open.
|
2044 |
|
|
* @param string $theme
|
2045 |
1ce9afb7
|
Patric Plitzner
|
* The theme to be used for rendering the cdm REST service response with is
|
2046 |
6657531f
|
Andreas Kohlbecker
|
* returned from the $content_url.
|
2047 |
|
|
* @param string $link_alt_text
|
2048 |
|
|
* The value for the alt attribute of the dynabox link.
|
2049 |
|
|
* @param array $enclosingtags
|
2050 |
|
|
* An array with two elements: $enclosingtags[0] will be used for the dynabox
|
2051 |
|
|
* element itself, $enclosingtags[1] is the tag to be used for the
|
2052 |
c1f5d897
|
Andreas Kohlbecker
|
* dynabox_content (optional)
|
2053 |
|
|
* @param string $open_callback
|
2054 |
1ce9afb7
|
Patric Plitzner
|
* optional javascript call back function to be triggered after toggling the box to
|
2055 |
c1f5d897
|
Andreas Kohlbecker
|
* the open state.
|
2056 |
|
|
* @param string $close_callback
|
2057 |
1ce9afb7
|
Patric Plitzner
|
* optional javascript call back function to be triggered after toggling the box to
|
2058 |
c1f5d897
|
Andreas Kohlbecker
|
* the closed state.
|
2059 |
6657531f
|
Andreas Kohlbecker
|
*
|
2060 |
|
|
* @return string
|
2061 |
|
|
* Returns HTML for a dynabox.
|
2062 |
|
|
*/
|
2063 |
9c9d11f7
|
Andreas Kohlbecker
|
function cdm_dynabox($dynabox_id, $label, $content_url, $theme, $link_alt_text, $enclosingtags = array('li', 'ul'), $attributes = array(), $open_callback = 'function(){}', $close_callback = 'function(){}') {
|
2064 |
6657531f
|
Andreas Kohlbecker
|
$out = '';
|
2065 |
c1f5d897
|
Andreas Kohlbecker
|
|
2066 |
|
|
// check for plain class attribute string
|
2067 |
|
|
$dynabox_id = preg_replace('/[^a-zA-Z0-9\-]/', '', $dynabox_id);
|
2068 |
|
|
|
2069 |
9c9d11f7
|
Andreas Kohlbecker
|
if(!array_key_exists('class', $attributes)) {
|
2070 |
|
|
$attributes['class'] = array();
|
2071 |
|
|
}
|
2072 |
|
|
$attributes['class'][] = 'dynabox-' . $dynabox_id;
|
2073 |
|
|
$dynabox_attributes = drupal_attributes($attributes);
|
2074 |
|
|
|
2075 |
|
|
|
2076 |
b386ae48
|
Andreas Kohlbecker
|
_add_js_domEvent(); // requires domEvent.js
|
2077 |
6657531f
|
Andreas Kohlbecker
|
drupal_add_js(drupal_get_path('module', 'cdm_dataportal') . '/js/cdm_dynabox.js');
|
2078 |
c1f5d897
|
Andreas Kohlbecker
|
drupal_add_js("
|
2079 |
94bb8db6
|
Andreas Kohlbecker
|
jQuery(document).ready(
|
2080 |
|
|
function() {
|
2081 |
|
|
dynabox('". $dynabox_id ."',
|
2082 |
|
|
{
|
2083 |
|
|
open_callback: " . $open_callback .",
|
2084 |
|
|
close_callback: " . $close_callback ."
|
2085 |
|
|
}
|
2086 |
|
|
);
|
2087 |
|
|
}
|
2088 |
|
|
);",
|
2089 |
|
|
array(
|
2090 |
|
|
'type'=>'inline',
|
2091 |
|
|
'scope'=>'footer'
|
2092 |
|
|
)
|
2093 |
|
|
);
|
2094 |
6657531f
|
Andreas Kohlbecker
|
|
2095 |
9c9d11f7
|
Andreas Kohlbecker
|
|
2096 |
6657531f
|
Andreas Kohlbecker
|
$cdm_proxy_url = url('cdm_api/proxy/' . urlencode($content_url) . "/$theme");
|
2097 |
9c9d11f7
|
Andreas Kohlbecker
|
$out .= '<!-- dynabox for ' . $content_url . ' -->';
|
2098 |
dcd1f0e0
|
Andreas Kohlbecker
|
$out .= '<' . $enclosingtags[0] . ' ' . $dynabox_attributes. '><a href="' . $cdm_proxy_url . '" class="label" alt="' . t($link_alt_text) . '">' . $label . '</a>';
|
2099 |
0b4f3649
|
Andreas Kohlbecker
|
// TODO stop using the title attribute, the label href now contains the same url!
|
2100 |
9c9d11f7
|
Andreas Kohlbecker
|
$out .= '<' . $enclosingtags[1] . ' class="dynabox-' . $dynabox_id . '-content" title="' . $cdm_proxy_url . '">';
|
2101 |
|
|
$out .= '<' . $enclosingtags[0] . ' class="dynabox-content-inner">' . loading_image_html() . '</' . $enclosingtags[0] . '>';
|
2102 |
|
|
$out .= '</' . $enclosingtags[1] . '>';
|
2103 |
6657531f
|
Andreas Kohlbecker
|
$out .= '</' . $enclosingtags[0] . '>';
|
2104 |
9c9d11f7
|
Andreas Kohlbecker
|
$out .= '<!-- dynabox end -->';
|
2105 |
6657531f
|
Andreas Kohlbecker
|
return $out;
|
2106 |
|
|
}
|
2107 |
|
|
|
2108 |
|
|
/**
|
2109 |
|
|
* Checks whether a feature has any description elements.
|
2110 |
|
|
*
|
2111 |
|
|
* @param mixed $featureNode
|
2112 |
|
|
* A feature node as produced by the function _mergeFeatureTreeDescriptions().
|
2113 |
|
|
*
|
2114 |
|
|
* @see _mergeFeatureTreeDescriptions()
|
2115 |
|
|
*
|
2116 |
|
|
* @return bool
|
2117 |
|
|
* Returns TRUE if the given $featureNode or any of its subordinate nodes
|
2118 |
|
|
* contains at least one non empty TextData or at least one DescriptionElement
|
2119 |
|
|
* of an other type. A TextData element holding a multilanguageText or a
|
2120 |
|
|
* source reference is considered to be not empty.
|
2121 |
159cd9bb
|
Andreas Kohlbecker
|
*
|
2122 |
|
|
* @TODO this function may have become obsolete by the new method of detecting empty blocks,
|
2123 |
|
|
* see $block_content_is_not_empty in compose_cdm_feature_nodes() and
|
2124 |
|
|
* $feature_block_has_content in compose_cdm_descriptionElements
|
2125 |
6657531f
|
Andreas Kohlbecker
|
*/
|
2126 |
f19f47fa
|
Andreas Kohlbecker
|
function has_feature_node_description_elements($featureNode) {
|
2127 |
6657531f
|
Andreas Kohlbecker
|
|
2128 |
|
|
if (isset($featureNode->descriptionElements) && is_array($featureNode->descriptionElements) && count($featureNode->descriptionElements) > 0) {
|
2129 |
092744e1
|
Andreas Kohlbecker
|
if(!isset($featureNode->descriptionElements['#type'])){ // #type is used to identify e.g. DTO elements: '#type' => 'DTO'
|
2130 |
|
|
foreach ($featureNode->descriptionElements as $descriptionElement) {
|
2131 |
159cd9bb
|
Andreas Kohlbecker
|
if ($descriptionElement->class != "TextData" || isset($descriptionElement->multilanguageText_L10n->text)
|
2132 |
|
|
&& $descriptionElement->multilanguageText_L10n->text != ''
|
2133 |
|
|
|| isset($descriptionElement->sources[0])
|
2134 |
|
|
|| isset($descriptionElement->media[0]) ) {
|
2135 |
092744e1
|
Andreas Kohlbecker
|
return TRUE;
|
2136 |
|
|
}
|
2137 |
6657531f
|
Andreas Kohlbecker
|
}
|
2138 |
|
|
}
|
2139 |
|
|
}
|
2140 |
092744e1
|
Andreas Kohlbecker
|
else if (isset($featureNode->childNodes) && is_array($featureNode->childNodes)) {
|
2141 |
fae36a2a
|
Andreas Kohlbecker
|
foreach ($featureNode->childNodes as $child) {
|
2142 |
f19f47fa
|
Andreas Kohlbecker
|
if (has_feature_node_description_elements($child)) {
|
2143 |
6657531f
|
Andreas Kohlbecker
|
return TRUE;
|
2144 |
|
|
}
|
2145 |
|
|
}
|
2146 |
|
|
}
|
2147 |
|
|
return FALSE;
|
2148 |
|
|
}
|
2149 |
f26245c8
|
Andreas Kohlbecker
|
|
2150 |
|
|
/**
|
2151 |
|
|
* Checks if the current page is a valid taxon portal page and responds with HTTP status 404 (not found) otherwise
|
2152 |
|
|
*
|
2153 |
|
|
* @param $chapter
|
2154 |
|
|
* The taxon page chapter or part
|
2155 |
|
|
*/
|
2156 |
|
|
function cdm_check_valid_taxon_page($chapter){
|
2157 |
|
|
static $taxon_tabs = null;
|
2158 |
|
|
|
2159 |
|
|
cdm_check_valid_portal_page();
|
2160 |
|
|
|
2161 |
|
|
if($taxon_tabs == null){
|
2162 |
|
|
$taxon_tabs = array('all', 'description');
|
2163 |
|
|
foreach(get_taxon_tabs_list() as $tab){
|
2164 |
|
|
$taxon_tabs[] = strtolower($tab);
|
2165 |
|
|
}
|
2166 |
|
|
}
|
2167 |
|
|
|
2168 |
|
|
if(!in_array($chapter, $taxon_tabs)){
|
2169 |
|
|
// oops this is not a valid chapter name
|
2170 |
|
|
http_send_status(404); // 404 = Not Found
|
2171 |
|
|
}
|
2172 |
|
|
|
2173 |
|
|
}
|
2174 |
|
|
|
2175 |
|
|
/**
|
2176 |
|
|
* Checks if the current page is a valid portal page and responds with HTTP status 404 (not found) otherwise
|
2177 |
|
|
*
|
2178 |
|
|
* @param $chapter
|
2179 |
|
|
* The taxon page chapter or part
|
2180 |
|
|
*/
|
2181 |
|
|
function cdm_check_valid_portal_page(){
|
2182 |
595de9f0
|
Andreas Kohlbecker
|
$ends_with_file_suffix_pattern = '/\/[^\.\/]*[\.][^\.\/]*$/';
|
2183 |
f26245c8
|
Andreas Kohlbecker
|
if(preg_match($ends_with_file_suffix_pattern, $_GET['q'])){
|
2184 |
|
|
// oops this urls ends with a file_suffix and thus does not refer to a portal page
|
2185 |
|
|
http_send_status(404); // 404 = Not Found
|
2186 |
595de9f0
|
Andreas Kohlbecker
|
exit('HTTP 404');
|
2187 |
f26245c8
|
Andreas Kohlbecker
|
}
|
2188 |
|
|
}
|