Revision 09f028e2
Added by Andreas Kohlbecker about 5 years ago
| modules/cdm_dataportal/includes/pages.inc | ||
|---|---|---|
| 111 | 111 |
} |
| 112 | 112 |
|
| 113 | 113 |
$by_associatedtaxon_query = http_build_query($associatedFieldUnitsQuery_parameters); |
| 114 |
$pagerFieldUnits = cdm_ws_get(CDM_WS_PORTAL_TAXON,
|
|
| 114 |
$pager_field_units = cdm_ws_get(CDM_WS_PORTAL_TAXON,
|
|
| 115 | 115 |
array($taxon->uuid, 'associatedFieldUnits'), |
| 116 | 116 |
$by_associatedtaxon_query . '&pageSize=' . variable_get('cdm_dataportal_compressed_specimen_derivate_table_page_size')
|
| 117 | 117 |
); |
| 118 |
if (isset($pager_field_units->records[0])) {
|
|
| 119 |
$field_unit_uuids = array(); |
|
| 120 |
foreach ($pager_field_units->records as $field_unit) {
|
|
| 121 |
$field_unit_uuids[] = $field_unit->uuid; |
|
| 122 |
} |
|
| 123 |
} |
|
| 118 | 124 |
// get icon images |
| 119 | 125 |
$expand_icon = font_awesome_icon_markup( |
| 120 | 126 |
'fa-plus-square-o', |
| ... | ... | |
| 135 | 141 |
$sequence_icon = '<img title="Molecular Data" src="' . base_path() . drupal_get_path('module', 'cdm_dataportal') . '/images/sequence_derivate-16x16-32.png' . '"/>';
|
| 136 | 142 |
$character_data_icon = '<img title="Character Data" src="' . base_path() . drupal_get_path('module', 'cdm_dataportal') . '/images/character_data_derivate-16x16-32.png' . '"/>';
|
| 137 | 143 |
if (isset($pagerFieldUnits->records[0])) {
|
| 138 |
$rowcount = 0; |
|
| 139 |
foreach ($pagerFieldUnits->records as $fieldUnit) {
|
|
| 140 |
//get derivate hierarchy for the FieldUnit |
|
| 141 |
$derivateHierarchy = cdm_ws_get(CDM_WS_PORTAL_OCCURRENCE, array($fieldUnit->uuid, 'derivateHierarchy'), 'taxonUuid=' . $taxon->uuid); |
|
| 142 |
if($derivateHierarchy){
|
|
| 143 |
//summary row |
|
| 144 |
$rows[] = array( |
|
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'data' => array( |
|
| 146 |
array( |
|
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'data' => $expand_icon . $collapse_icon, |
|
| 148 |
'class' => array('summary_row_cell', 'summary_row_icon', 'expand_column')
|
|
| 149 |
), |
|
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array( |
|
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'data' => $derivateHierarchy->country, |
|
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'class' => array('summary_row_cell')
|
|
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), |
|
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array( |
|
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'data' => $derivateHierarchy->date, |
|
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'class' => array('summary_row_cell')
|
|
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), |
|
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array( |
|
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'data' => $derivateHierarchy->collection, |
|
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'class' => array('summary_row_cell')
|
|
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), |
|
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array( |
|
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'data' => $derivateHierarchy->herbarium, |
|
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'class' => array('summary_row_cell')
|
|
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), |
|
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array( |
|
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'data' => $derivateHierarchy->hasType? $checked_box_icon:"", |
|
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'class' => array('summary_row_cell', 'summary_row_icon')
|
|
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), |
|
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array( |
|
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'data' => $derivateHierarchy->hasSpecimenScan? $checked_box_icon:"", |
|
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'class' => array('summary_row_cell', 'summary_row_icon')
|
|
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), |
|
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array( |
|
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'data' => ($derivateHierarchy->hasDna? $sequence_icon :"")." " |
|
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.($derivateHierarchy->hasDetailImage?$detail_image_icon:"")." " |
|
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.($derivateHierarchy->hasCharacterData?$character_data_icon:""), |
|
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'class' => array('summary_row_cell', 'summary_row_icon')
|
|
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) |
|
| 144 |
$rowcount = 0; |
|
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foreach ($field_unit_uuids as $field_unit_uuid) {
|
|
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//get derivate hierarchy for the FieldUnit |
|
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$derivateHierarchy = cdm_ws_get(CDM_WS_PORTAL_OCCURRENCE, array($field_unit_uuid, 'derivateHierarchy')); |
|
| 148 |
if($derivateHierarchy){
|
|
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//summary row |
|
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$rows[] = array( |
|
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'data' => array( |
|
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array( |
|
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'data' => $expand_icon . $collapse_icon, |
|
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'class' => array('summary_row_cell', 'summary_row_icon', 'expand_column')
|
|
| 180 | 155 |
), |
| 181 |
'id' => ('derivate_summary' . $rowcount), // summary row id
|
|
| 182 |
'class' => array('summary_row'),
|
|
| 183 |
); |
|
| 156 |
array( |
|
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'data' => $derivateHierarchy->country, |
|
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'class' => array('summary_row_cell')
|
|
| 159 |
), |
|
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array( |
|
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'data' => $derivateHierarchy->date, |
|
| 162 |
'class' => array('summary_row_cell')
|
|
| 163 |
), |
|
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array( |
|
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'data' => $derivateHierarchy->collection, |
|
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'class' => array('summary_row_cell')
|
|
| 167 |
), |
|
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array( |
|
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'data' => $derivateHierarchy->herbarium, |
|
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'class' => array('summary_row_cell')
|
|
| 171 |
), |
|
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array( |
|
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'data' => $derivateHierarchy->hasType? $checked_box_icon:"", |
|
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'class' => array('summary_row_cell', 'summary_row_icon')
|
|
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), |
|
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array( |
|
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'data' => $derivateHierarchy->hasSpecimenScan? $checked_box_icon:"", |
|
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'class' => array('summary_row_cell', 'summary_row_icon')
|
|
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), |
|
| 180 |
array( |
|
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'data' => ($derivateHierarchy->hasDna? $sequence_icon :"")." " |
|
| 182 |
.($derivateHierarchy->hasDetailImage?$detail_image_icon:"")." " |
|
| 183 |
.($derivateHierarchy->hasCharacterData?$character_data_icon:""), |
|
| 184 |
'class' => array('summary_row_cell', 'summary_row_icon')
|
|
| 185 |
) |
|
| 186 |
), |
|
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'id' => ('derivate_summary' . $rowcount), // summary row id
|
|
| 188 |
'class' => array('summary_row'),
|
|
| 189 |
); |
|
| 184 | 190 |
|
| 185 |
//assemble field unit details |
|
| 186 |
$detail_html = ""; |
|
| 187 |
// - taxon name |
|
| 188 |
if (variable_get('cdm_dataportal_compressed_specimen_derivate_table_show_determined_as') && $derivateHierarchy->taxonName) {
|
|
| 189 |
$detail_html .= create_label("Associated with") . $derivateHierarchy->taxonName . "<br>";
|
|
| 190 |
} |
|
| 191 |
// - protologue |
|
| 192 |
if ($derivateHierarchy->protologue) {
|
|
| 193 |
//$detail_html .= "<strong>Protologue:</strong> " . $derivateHierarchy->protologue . "<br>" |
|
| 194 |
} |
|
| 195 |
// - citation |
|
| 196 |
if ($derivateHierarchy->citation) {
|
|
| 197 |
$detail_html .= create_label("Citation") . $derivateHierarchy->citation . "<br>";
|
|
| 198 |
} |
|
| 199 |
//assemble specimen details |
|
| 200 |
if($derivateHierarchy->preservedSpecimenDTOs){
|
|
| 201 |
foreach($derivateHierarchy->preservedSpecimenDTOs as $preservedSpecimenDTO) {
|
|
| 202 |
$detail_html .= "<br>"; |
|
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$detail_html .= render_cdm_specimen_page($preservedSpecimenDTO); |
|
| 204 |
} |
|
| 191 |
//assemble field unit details |
|
| 192 |
$detail_html = ""; |
|
| 193 |
// - citation |
|
| 194 |
if ($derivateHierarchy->citation) {
|
|
| 195 |
$detail_html .= create_label("Citation") . $derivateHierarchy->citation . "<br>";
|
|
| 196 |
} |
|
| 197 |
//assemble specimen details |
|
| 198 |
if($derivateHierarchy->preservedSpecimenDTOs){
|
|
| 199 |
foreach($derivateHierarchy->preservedSpecimenDTOs as $preservedSpecimenDTO) {
|
|
| 200 |
$detail_html .= "<br>"; |
|
| 201 |
$detail_html .= render_cdm_specimen_page($preservedSpecimenDTO); |
|
| 205 | 202 |
} |
| 206 |
$detail_html .= "<br>"; |
|
| 207 |
//detail row resp. one BIG detail cell |
|
| 208 |
$rows[] = array( |
|
| 209 |
'data' => array( |
|
| 210 |
array( |
|
| 211 |
'data' => "", //empty first column |
|
| 212 |
'class' => array('expand_column')
|
|
| 213 |
), |
|
| 214 |
array( |
|
| 215 |
'data' => $detail_html, |
|
| 216 |
'colspan' => 7, |
|
| 217 |
), |
|
| 203 |
} |
|
| 204 |
$detail_html .= "<br>"; |
|
| 205 |
//detail row resp. one BIG detail cell |
|
| 206 |
$rows[] = array( |
|
| 207 |
'data' => array( |
|
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array( |
|
| 209 |
'data' => "", //empty first column |
|
| 210 |
'class' => array('expand_column')
|
|
| 218 | 211 |
), |
| 219 |
'id' => ('derivate_details' . $rowcount),//details row ID
|
|
| 220 |
'class' => array('detail_row'),
|
|
| 221 |
); |
|
| 222 |
$rowcount++; |
|
| 212 |
array( |
|
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'data' => $detail_html, |
|
| 214 |
'colspan' => 7, |
|
| 215 |
), |
|
| 216 |
), |
|
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'id' => ('derivate_details' . $rowcount),//details row ID
|
|
| 218 |
'class' => array('detail_row'),
|
|
| 219 |
); |
|
| 220 |
$rowcount++; |
|
| 223 | 221 |
} |
| 224 | 222 |
} |
| 225 | 223 |
|
| ... | ... | |
| 246 | 244 |
$render_array['derivate_hierarchy_table'] = $derivateHierarchyTable; |
| 247 | 245 |
$render_array['pager'] = markup_to_render_array( |
| 248 | 246 |
theme('cdm_pager', array(
|
| 249 |
'pager' => $pagerFieldUnits,
|
|
| 247 |
'pager' => $pager_field_units,
|
|
| 250 | 248 |
'path' => $_REQUEST['q'], |
| 251 | 249 |
'parameters' => $_REQUEST |
| 252 | 250 |
)), |
Also available in: Unified diff
ref #7562 removing "Associated with" name from Specimen table