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<?php
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/**
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* @file
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* Page theming functions.
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*
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* @copyright
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* (C) 2007-2012 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this module are subject to the Mozilla
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* Public License Version 1.1.
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* @see http://www.mozilla.org/MPL/MPL-1.1.html
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*/
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/**
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* Returns HTML for the default title of a taxon page.
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* * The returned title is a formatted taxon name.
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*
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* @param array $variables
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* An associative array containing:
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* - taxon: The taxon name being formatted for the title.
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* - uuid: UUID for the taxon.
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*
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* @ingroup themeable
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*/
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function theme_cdm_taxon_page_title($variables) {
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$taxon = $variables['taxon'];
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RenderHints::pushToRenderStack('taxon_page_title');
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$referenceUri = '';
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$out = '';
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if (isset($taxon->name->nomenclaturalReference)) {
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$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid));
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}
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$out .= render_taxon_or_name($taxon, NULL, $referenceUri, FALSE);
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RenderHints::popFromRenderStack();
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return '<span class="' . $taxon->class . '">' . $out . '</span>';
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}
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/**
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* Returns HTML for the default title of a specimen page.
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* * The returned title is a the identifier of the specimen.
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*
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* @param array $variables
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* An associative array containing:
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* - specimen: The specimen being formatted for the title.
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*
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* @ingroup themeable
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*/
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function theme_cdm_specimen_page_title($variables) {
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$specimen = $variables['specimen'];
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RenderHints::pushToRenderStack('specimen_page_title');
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$referenceUri = '';
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$out = '';
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if($specimen->collection->code){
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$collection = $specimen->collection->code;
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}
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elseif($specimen->collection->name){
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$collection = $specimen->collection->name;
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}
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if($specimen->accessionNumber){
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$specimenID = $specimen->accessionNumber;
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}
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elseif($specimen->barcode){
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$specimenID = $specimen->barcode;
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}
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elseif($specimen->catalogNumber) {
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$specimenID = $specimen->catalogNumber;
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}
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if(!isset($specimenID) and !isset($collection)){
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$specimenID = $specimen->uuid;
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}
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$out .= "Specimen ";
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if($collection){
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$out .= $collection." ";
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}
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$out .= $specimenID;
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RenderHints::popFromRenderStack();
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return '<span class="' . $specimen->class . '">' . $out . '</span>';
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}
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/**
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* Returns HTML for the default title for a name page.
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*
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* The returned title is a formatted name.
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*
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* @param array $variables
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* An associative array containing:
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* - taxon_name: The taxon name object.
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*
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* @ingroup themeable
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*/
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function theme_cdm_name_page_title($variables) {
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$taxon_name = $variables['taxon_name'];
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RenderHints::pushToRenderStack('taxon_page_title');
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$referenceUri = NULL;
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if (isset($taxon_name->nomenclaturalReference)) {
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$referenceUri = url(path_to_reference($taxon_name->nomenclaturalReference->uuid));
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}
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$out = '<span class="' . $taxon_name->class . '">'
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. render_taxon_or_name($taxon_name, NULL, $referenceUri, FALSE)
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. '</span>';
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RenderHints::popFromRenderStack();
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return $out;
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}
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/**
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* Returns HTML containing the synonymy for the accepted taxon.
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*
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* Shows the whole synonymy for the accepted taxon.
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* The synonymy list is headed by the complete scientific name
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* of the accepted taxon with nomenclatural reference.
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*
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* @param array $variables
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* An associative array containing:
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* - taxon
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* - addAcceptedTaxon
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*
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* @ingroup themeable
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*/
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function theme_cdm_taxon_page_synonymy($variables) {
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$taxon = $variables['taxon'];
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$addAcceptedTaxon = $variables['addAcceptedTaxon'];
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RenderHints::pushToRenderStack('taxon_page_synonymy');
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// footnote key for the homotypic group and accepted taxon,
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// both should have the same footnote key
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RenderHints::setFootnoteListKey(RenderHints::getRenderPath());
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$synomymie = cdm_ws_get(CDM_WS_PORTAL_TAXON_SYNONYMY, array($taxon->uuid));
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$out = '';
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// Render accepted taxon.
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//
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// foonotes of the accepted taxon will be rendered in the homotypic group section
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// even if there are not synonyms in the homotypic group
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// homotypic group and accepted taxon should have the same footnote key
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$referenceUri = '';
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if ($addAcceptedTaxon) {
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// remember the last part of the render path
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$synonymy_render_path = RenderHints::getRenderPath();
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// set new render path for the accepted taxon so
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// it can be styled differently via the name render part definitions
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RenderHints::pushToRenderStack('accepted_taxon');
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if (isset($taxon->name->nomenclaturalReference)) {
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$referenceUri = url(path_to_reference($taxon->name->nomenclaturalReference->uuid));
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}
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$accepted_name = '<div class="accepted-name">';
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$accepted_name .= render_taxon_or_name($taxon, NULL, $referenceUri);
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$name_relationships = cdm_name_relationships_of($taxon);
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// Render relationships of accepted name.
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if($name_relationships){
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$accepted_name .= ' <span class="name_relationships">' . $name_relationships . '</span>';
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}
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// handle annotations of the name and taxon
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$special_annotations_array = array();
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$special_annotations_array[] = $taxon->name;
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$special_annotations_array[] = $taxon;
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$accepted_name .= theme('cdm_annotations_as_footnotekeys', array(
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'cdmBase_list' => $special_annotations_array,
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'footnote_list_key' => $synonymy_render_path . '-annotations')
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);
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$accepted_name .= '</div>';
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RenderHints::popFromRenderStack();
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}
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// --- Render homotypic synonymy group
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if (!empty($accepted_name)) {
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$out .= $accepted_name;
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}
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// Render the homotypicSynonymyGroup including the type information.
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$out .= theme(
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'cdm_homotypicSynonymyGroup',
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array(
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'synonymList' => $synomymie->homotypicSynonymsByHomotypicGroup,
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'accepted_taxon_name_uuid' => $taxon->name->uuid
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)
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);
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// Render accepted taxon heterotypic synonymy groups.
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if ($synomymie->heterotypicSynonymyGroups) {
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foreach ($synomymie->heterotypicSynonymyGroups as $homotypicalGroup) {
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$out .= theme('cdm_heterotypicSynonymyGroup', array('homotypicalGroup' => $homotypicalGroup));
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}
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}
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// Render taxon relationships.
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if (variable_get(CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS, CDM_DATAPORTAL_DISPLAY_TAXON_RELATIONSHIPS_DEFAULT)) {
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$taxonRelationships = cdm_ws_get(CDM_WS_PORTAL_TAXON_RELATIONS, $taxon->uuid);
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$out .= cdm_taxonRelationships($taxonRelationships, $taxon);
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}
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RenderHints::popFromRenderStack();
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return $out;
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}
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/**
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* Returns HTML for the given result page including a pager.
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*
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* @param array $variables
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* An associative array containing:
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* - pager: The cdmlib pager object containing the result set of cdm base
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* objects (currently this function can only handle taxon instances =>
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* TODO)
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* - path: The target path for the pager links, this will usually point to
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* 'cdm_dataportal/search/results/taxon'
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*
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* @ingroup themeable
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*/
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function theme_cdm_search_results($variables)
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{
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$pager = $variables['pager'];
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$path = $variables['path'];
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$freetextSearchResults = array();
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// If the pager contains records of SearchResults, extract the taxa and use
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// them as records instead.
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if (isset($pager->records[0]) && $pager->records[0]->class == "SearchResult") {
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$freetextSearchResults = $pager->records;
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$taxa = array();
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// $highlightedFragments = array();
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foreach ($pager->records as $searchResult) {
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$taxa[] = &$searchResult->entity;
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/*
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if(!isset($searchResult->fieldHighlightMap)){
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$searchResult->fieldHighlightMap = NULL;
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}
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$fragmentHighlighting[] = $searchResult->fieldHighlightMap;
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*/
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}
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$pager->records = $taxa;
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}
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// Add thumbnails checkbox and refine search link.
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$out = '<div class="page_options">';
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if (isset($_REQUEST['ws'])) {
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if (cdm_dataportal_search_form_path_for_ws($_REQUEST['ws'])) {
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$out .= '<div id="backButton">' . l(t('Modify search'), cdm_dataportal_search_form_path_for_ws($_REQUEST['ws'])) . '</div>';
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}
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}
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if (variable_get(SEARCH_RESULTS_SHOW_THUMBNAIL_CHECKBOX, SEARCH_RESULTS_SHOW_THUMBNAIL_CHECKBOX_DEFAULT)) {
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$out .= '<form name="pageoptions"><div id="showThumbnails"><input class="showThumbnails" type="checkbox" name="showThumbnails" ' . (do_showThumbnails() == 1 ? 'checked="checked"' : '') . '> ' . t('Display image thumbnails') . '</div></form>';
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}
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$out .= '</div>';
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$classification = cdm_dataportal_searched_in_classification();
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if ( count(cdm_ws_fetch_all(CDM_WS_PORTAL_TAXONOMY)) > 1 ) { // FIXME use a count REST method for this!!!
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$out .= '<div id="search-summary">' . t('results for') . ' ';
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if ($classification != NULL) {
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$out .= $classification->titleCache ;
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} else {
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$out .= t('any classification');
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}
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$out .= ':</div>';
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}
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// List results.
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if (isset($pager->records) && count($pager->records) > 0) {
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$out .= '<div id="search_results">';
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$list_of_taxa = compose_list_of_taxa($pager->records, $freetextSearchResults, $classification === NULL);
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$out .= drupal_render($list_of_taxa);
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$out .= '</div>';
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$out .= theme('cdm_pager', array(
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'pager' => $pager,
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'path' => $path,
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'parameters' => $_REQUEST,
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));
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} else {
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$out .= '<h4 class="error">' . t('Sorry, no matching entries found.') . '</h4>';
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}
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return $out;
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}
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/**
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* TODO Implementation of Hook taxon_image_gallery()
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*
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* @param unknown_type $taxon
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* @param unknown_type $media
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*
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* @return unknown_type
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*/
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function taxon_image_gallery_default($taxon, $media) {
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$hasImages = isset($media[0]);
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if ($hasImages) {
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$maxExtend = 150;
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$cols = 3;
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$maxRows = FALSE;
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$alternativeMediaUri = NULL;
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/* Comment @WA: was in D5:
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$captionElements = array(
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'title',
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'rights',
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'#uri' => t('Open Image'),
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);
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*/
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$captionElements = array(
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'title',
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'description',
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'artist',
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'location',
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'rights',
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'#uri' => t('Open image'),
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);
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$gallery_name = $taxon->uuid;
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$mediaLinkType = 'LIGHTBOX';
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// $gallery_settings = getGallerySettings(CDM_DATAPORTAL_MEDIA_GALLERY_NAME);
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$gallery_settings = getGallerySettings(CDM_DATAPORTAL_TAXON_MEDIA_GALLERY_NAME_TAB);
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$out = '<div class="image-gallerie">';
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$out .= compose_cdm_media_gallerie(array(
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'mediaList' => $media,
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'galleryName' => $gallery_name,
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'maxExtend' => $gallery_settings['cdm_dataportal_media_maxextend'],
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'cols' => $gallery_settings['cdm_dataportal_media_cols'],
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'maxRows' => 0, // Ignore maxrows settings.
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'captionElements' => $captionElements,
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'mediaLinkType' => $mediaLinkType,
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'alternativeMediaUri' => NULL,
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'galleryLinkUri' => NULL,
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'showCaption' => $gallery_settings['cdm_dataportal_show_thumbnail_captions'],
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));
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$out .= '</div>';
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}
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else {
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$out = 'No images available.';
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}
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return $out;
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}
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/**
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* TODO Implementation of Hook taxon_image_gallery()
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*
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* @param unknown_type $taxon
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* @param unknown_type $media
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*
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* @return unknown_type
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*/
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function taxon_image_gallery_fsi($taxon, $media) {
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$flashLink = isset($media[0]);
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if ($flashLink) {
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if (module_exists("fsi_gallery")) {
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$out = theme("fsi_gallery", array('taxon' => $taxon, 'media' => $media));
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}
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else {
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$message = t('In order to use the FSI gallery you must enable the according ') . l(t("module"), "admin/modules");
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drupal_set_message($message, "error");
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$out = '<h3>' . $message . '</h3>';
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}
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}
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else {
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$out = 'No images available.';
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}
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return $out;
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}
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/**
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* Returns HTML for a single reference page.
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*
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* Renders a page with all data on a single reference.
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*
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* @param array $variables
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* An associative array containing:
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* - reference: Object.
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*
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* @ingroup themeable
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*/
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function theme_cdm_reference_page($variables) {
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$reference = $variables['reference'];
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$out = '';
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if (isset($reference->titleCache)) {
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drupal_set_title($reference->titleCache, PASS_THROUGH);
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}
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409
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$field_order = array(
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"title",
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"abbrevTitle",
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// "titleCache" abbrevTitleCache
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// "citation",
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"authorship",
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"editor",
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"publisher",
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"placePublished",
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"datePublished",
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"year",
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"edition",// Class Book.
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"volume",// Class Article.
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"seriesPart",
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"inReference",
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"nomRefBase", // Class BookSection, Book, Article.
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"pages",// Class Article.
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"series",// Class Article, PrintSeries.
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"school",// Class Thesis.
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"institution",// Class Report.
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"organization",// Class Proceedings.
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"nextVersion",
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"previousVersion",
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"isbn",// Class Book.
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"issn",// Class Journal.
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"doi",
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"uri"
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);
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$table_rows = array();
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|
441
|
if (!isset($reference->authorship)) {
|
442
|
$authorship = cdm_ws_get(CDM_WS_REFERENCE_AUTHORTEAM, $reference->uuid);
|
443
|
$reference->authorship = isset($authorship->titleCache) ? $authorship->titleCache : '';
|
444
|
}
|
445
|
|
446
|
if (!isset($reference->inReference)) {
|
447
|
$reference->inReference = cdm_ws_get(CDM_WS_REFERENCE, array(
|
448
|
$reference->uuid,
|
449
|
"inReference",
|
450
|
));
|
451
|
}
|
452
|
|
453
|
foreach ($field_order as $fieldname) {
|
454
|
|
455
|
if (isset($reference->$fieldname)) {
|
456
|
|
457
|
if ($fieldname == "datePublished") {
|
458
|
$period = $reference->$fieldname;
|
459
|
$datePublished = timePeriodToString($period);
|
460
|
if (isset($datePublished) && $datePublished != '') {
|
461
|
$table_rows[] = array(
|
462
|
t("Date published"),
|
463
|
$datePublished,
|
464
|
);
|
465
|
}
|
466
|
// $datePublished = array(t(ucfirst(strtolower($fieldname))),
|
467
|
// $datePublished);
|
468
|
}
|
469
|
elseif ($fieldname == "doi" && is_object($reference->doi)) {
|
470
|
$table_rows[] = array(
|
471
|
t('@fieldname', array('@fieldname' => ucfirst(strtolower($fieldname)))),
|
472
|
cdm_doi($reference->doi, false)
|
473
|
);
|
474
|
}
|
475
|
elseif ($fieldname == "uri" && isset($reference->uri) && $reference->uri) {
|
476
|
$table_rows[] = array(
|
477
|
t('@fieldname', array('@fieldname' => ucfirst(strtolower($fieldname)))),
|
478
|
cdm_external_uri($reference->uri, false)
|
479
|
);
|
480
|
}
|
481
|
elseif (is_object($reference->$fieldname)) {
|
482
|
if ($fieldname == "authorship") {
|
483
|
$dump = $reference->$fieldname;
|
484
|
$teammembers = "teamMembers";
|
485
|
$team = $dump->$teammembers;
|
486
|
$nameArray = array();
|
487
|
|
488
|
foreach ($team as $member) {
|
489
|
if (strlen($member->lastname) > 0) {
|
490
|
$nname = $member->lastname;
|
491
|
$name = $nname;
|
492
|
if (strlen($member->firstname) > 0) {
|
493
|
$vname = $member->firstname;
|
494
|
$name = $vname . " " . $nname;
|
495
|
}
|
496
|
$nameArray[] = $name;
|
497
|
}
|
498
|
else {
|
499
|
if (strlen($member->titleCache) > 0) {
|
500
|
$nameArray[] = $member->titleCache;
|
501
|
}
|
502
|
}
|
503
|
}
|
504
|
$value = join($nameArray, ", ");
|
505
|
}
|
506
|
elseif ($fieldname == "inReference") {
|
507
|
$type = $reference->$fieldname->type;
|
508
|
$value = l($reference->$fieldname->titleCache, path_to_reference($reference->$fieldname->uuid));
|
509
|
switch ($type) {
|
510
|
case "Book":
|
511
|
$fieldname = "in book";
|
512
|
break;
|
513
|
case "Journal":
|
514
|
$fieldname = "in journal";
|
515
|
break;
|
516
|
case "Proceedings":
|
517
|
$fieldname = "in proceedings";
|
518
|
break;
|
519
|
}
|
520
|
}
|
521
|
else {
|
522
|
$value = $reference->$fieldname->titleCache;
|
523
|
}
|
524
|
|
525
|
|
526
|
if (isset($value) && $value != '') {
|
527
|
$table_rows[] = array(
|
528
|
t('@fieldname', array('@fieldname' => ucfirst(strtolower($fieldname)))),
|
529
|
$value,
|
530
|
);
|
531
|
}
|
532
|
|
533
|
}
|
534
|
else {
|
535
|
if (isset($reference->$fieldname) && $reference->$fieldname != '') {
|
536
|
$table_rows[] = array(
|
537
|
t('@fieldname', array('@fieldname' => ucfirst(strtolower($fieldname)))),
|
538
|
$reference->$fieldname,
|
539
|
);
|
540
|
}
|
541
|
}
|
542
|
}
|
543
|
}
|
544
|
|
545
|
$out = theme_table(array(
|
546
|
'header' => array(),
|
547
|
'rows' => $table_rows,
|
548
|
'attributes' => array(
|
549
|
'class' => html_class_attribute_ref($reference)
|
550
|
),
|
551
|
'caption' => NULL,
|
552
|
'colgroups' => NULL,
|
553
|
'sticky' => NULL,
|
554
|
'empty' => NULL,
|
555
|
));
|
556
|
|
557
|
if($reference->referenceAbstract){
|
558
|
$out .= '<h2 class="block-title">Abstract</h2><div class="abstract">' . $reference->referenceAbstract . '</div>';
|
559
|
}
|
560
|
|
561
|
// Annotations below the table.
|
562
|
$annotations = cdm_ws_getAnnotationsFor($reference);
|
563
|
$out .= theme("cdm_annotations", array('annotations' => $annotations));
|
564
|
|
565
|
return $out;
|
566
|
}
|
567
|
|
568
|
/**
|
569
|
* @todo Please document this function.
|
570
|
* @see http://drupal.org/node/1354
|
571
|
*/
|
572
|
function theme_cdm_media_page($variables) {
|
573
|
|
574
|
$media = $variables['media'];
|
575
|
$mediarepresentation_uuid = $variables['mediarepresentation_uuid'];
|
576
|
$partId = $variables['partId'];
|
577
|
$out = '';
|
578
|
|
579
|
// Determine which representation and which part to show
|
580
|
$active_representation_index = 0;
|
581
|
|
582
|
if (!$mediarepresentation_uuid) {
|
583
|
// no representation requested by the method parameters, find the best one
|
584
|
$representations = cdm_preferred_media_representations($media, array('image/png', 'image/jpeg', 'image/gif'), null, null);
|
585
|
if($representations && count($representations) > 0){
|
586
|
$preferred_representation = array_shift($representations);
|
587
|
$mediarepresentation_uuid = $preferred_representation->uuid;
|
588
|
}
|
589
|
}
|
590
|
|
591
|
if($mediarepresentation_uuid){
|
592
|
foreach ($media->representations as $representation) {
|
593
|
if ($representation->uuid == $mediarepresentation_uuid) {
|
594
|
break;
|
595
|
}
|
596
|
$active_representation_index++;
|
597
|
}
|
598
|
}
|
599
|
|
600
|
|
601
|
$active_part_index = 0;
|
602
|
if (is_uuid($partId)) {
|
603
|
foreach ($media->representations[$active_representation_index]->parts as $part) {
|
604
|
if ($part->uuid == $partId) {
|
605
|
break;
|
606
|
}
|
607
|
$active_part_index++;
|
608
|
}
|
609
|
}
|
610
|
else if(is_numeric($partId)){
|
611
|
$active_part_index = $partId;
|
612
|
}
|
613
|
|
614
|
$media_metadata = read_media_metadata($media);
|
615
|
// $title = $media->titleCache;
|
616
|
$title = $media_metadata['title'];
|
617
|
|
618
|
$imageMaxExtend = variable_get('image-page-maxextend', 400);
|
619
|
|
620
|
if (!$title) {
|
621
|
$title = 'Media ' . $media->uuid . '';
|
622
|
}
|
623
|
|
624
|
drupal_set_title($title, PASS_THROUGH);
|
625
|
|
626
|
$out .= '<div class="media cdm_media_viewer_image">';
|
627
|
|
628
|
if(preg_match('/cdm_dataportal\/taxon\//', $_SERVER['HTTP_REFERER']) ){
|
629
|
$out .= '<div id="backToGalleryButton">' . l(t('Back to Images'), $_SESSION['cdm']['last_gallery']) . '</div>';
|
630
|
}
|
631
|
$out .= '<div class="viewer">';
|
632
|
$out .= cdm_openlayers_image($media->representations[$active_representation_index]->parts[$active_part_index], $imageMaxExtend);
|
633
|
$out .= '</div>';
|
634
|
|
635
|
// General media metadata.
|
636
|
$metadataToPrint = theme('cdm_media_caption', array('media' => $media, 'sources_as_content' => true));
|
637
|
$out .= $metadataToPrint;
|
638
|
|
639
|
$cdm_standard_image_viewer_settings = get_array_variable_merged(CDM_STANDARD_IMAGE_VIEWER, CDM_STANDARD_IMAGE_VIEWER_DEFAULT);
|
640
|
if ($cdm_standard_image_viewer_settings['media_representation_details_enabled'] == 1){
|
641
|
// Tabs for the different representations.
|
642
|
// Representation(-part) specific metadata.
|
643
|
$thumbnailMaxExtend = 100;
|
644
|
$out .= '<h3>' .t('Media representations') .'</h3><ul id="media-representations">';
|
645
|
$r_i = 0;
|
646
|
foreach ($media->representations as $representation) {
|
647
|
$out .= '<li><strong>'. t('Representation') . ' ' . $r_i . "</strong> ($representation->mimeType)" ;
|
648
|
// parts
|
649
|
$active_part_index = 0;
|
650
|
$table_class_attribute = '';
|
651
|
if($partIdx == $active_part_index && $active_representation_index == $r_i ){
|
652
|
$table_class_attribute = 'class="active"';
|
653
|
}
|
654
|
$out .= "<table $table_class_attribute>";
|
655
|
foreach ($representation->parts as $part) {
|
656
|
$out .= '<tr><th>' . t('Part') . ' ' . ($active_part_index + 1) . '</th></tr><tr><td>';
|
657
|
switch ($part->class) {
|
658
|
case 'ImageFile':
|
659
|
$out .= $part->width . 'x' . $part->height . ' px - ' . $part->size . ' kB';
|
660
|
break;
|
661
|
case 'AudioFile':
|
662
|
case 'MovieFile':
|
663
|
$out .= t('Duration') . ': ' . $part->duration . 's - ' . $part->size . ' kB';
|
664
|
break;
|
665
|
default:
|
666
|
$out .= $part->size . 'k';
|
667
|
}
|
668
|
|
669
|
$out .= '</td><td><a href="' . url(path_to_media($media->uuid, $representation->uuid, $active_part_index)) . '">'
|
670
|
. cdm_media_gallerie_image($part, $thumbnailMaxExtend, TRUE);
|
671
|
$active_part_index++;
|
672
|
}
|
673
|
$out .= '</table>';
|
674
|
$out .= '</li>';
|
675
|
$r_i++;
|
676
|
}
|
677
|
$out .= '</ul>';
|
678
|
}
|
679
|
|
680
|
$out .= '</div>';
|
681
|
return $out;
|
682
|
}
|
683
|
|
684
|
/**
|
685
|
* @todo Please document this function.
|
686
|
* @see http://drupal.org/node/1354
|
687
|
*/
|
688
|
function theme_cdm_polytomousKey_page($variables) {
|
689
|
$polytomousKey = $variables['polytomousKey'];
|
690
|
drupal_set_title($polytomousKey->titleCache, PASS_THROUGH);
|
691
|
|
692
|
$out = theme("cdm_IdentificationKey", array(
|
693
|
'identificationKey' => $polytomousKey,
|
694
|
'doLinkToKeyPage' => FALSE,
|
695
|
'showIdentificationKeyTitle' => FALSE,
|
696
|
));
|
697
|
|
698
|
// Key nodes in linked style.
|
699
|
$out .= theme('cdm_polytomousKey', array('polytomousKey' => $polytomousKey));
|
700
|
/*
|
701
|
* FIXME implement node type for keys !!!
|
702
|
* (wrapping the content in the cdm_dataportal.node becomes obsolete then).
|
703
|
*/
|
704
|
return '<div id="identificationKey">' . $out . '</div>';
|
705
|
}
|