EDIT

<?php

// $Id$

/**

* Copyright (C) 2007 EDIT

* European Distributed Institute of Taxonomy 

* http://www.e-taxonomy.eu

* 

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See http://www.mozilla.org/MPL/MPL-1.1.html for the full license terms.

*/

define(FOOTNOTE_ANNOTATIONS, 'annotations');

/**

 * TODO if getting fragment from request is possible remove $_REQUEST['highlite'] HACK

 * NOT WORKING since fragments are not available to the server

 function fragment(){

 global $fragment;

 if(!$fragment){

 $fragment = substr($_SERVER['REQUEST_URI'], strrpos($_SERVER['REQUEST_URI'], '#'));

 }

 return $fragment;

 }

 */

function uuid_anchor($uuid, $innerHTML){

	$highlite = $_REQUEST['highlite'] == $uuid;

	return '<a name="'.$uuid.'" ></a><span class="'.($highlite ? 'highlite' : '').'">'.$innerHTML.'</span>';

}

/**

 * Enter description here...

 *

 * @param unknown_type $name

 * @param unknown_type $numOfNameTokens

 * @return unknown

 * @deprecated looks like this is not used anymore

 */

function tagNameParts($name, $numOfNameTokens){

	$out = '<span class="name">';

	$token = strtok($name, " \n\t");

	$i = 0;

	$noSpace = true;

	while($token != false){

		if($i == $numOfNameTokens){

			$out .= '</span> <span class="authors">';

			$noSpace = true;

		}

		$out .= ($noSpace?'':' ').$token;

		$noSpace = false;

		$token = strtok(" \n\t");

		$i++;

	}

	return $out.'</span>';

}

/**

 * Converts an array of TagedText items into a sequence of corresponding html tags whereas

 * each item will provided with a class attribute which set to the key of the TaggedText item.

 *

 * @param array $taggedtxt

 * @param String $tag

 * @param String $glue the string by which the chained text tokens are concatenated together.

 *       Default is a blank character

 * @return String of HTML

 */

function theme_cdm_taggedtext2html(array &$taggedtxt, $tag = 'span', $glue = ' ', $skiptags = array()){

	$out = '';

	$i = 0;

	foreach($taggedtxt as $tt){

		if(!in_array($tt->type, $skiptags) && strlen($tt->text) > 0){

			$out .= (strlen($out) > 0 && ++$i < count($taggedtxt)? $glue : '').'<'.$tag.' class="'.$tt->type.'">'.t($tt->text).'</'.$tag.'>';

		}

	}

	return $out;

}

/* ============================ annotations ============================= */

/**

 * Almost any cdmObject may be annotated. Therefore we provide a generic way to display

 * as well as create or update annotations.

 * The following cdm classes are annotatable:

 * 

 *  DescriptionElementBase

 *	EventBase

 *	HomotypicalGroup

 *	IdentifiableEntity

 *	  DescriptionBase

 *	  IdentifiableMediaEntity

 *	  Media

 *	  Sequence

 *	  TaxonBase

 *	  TaxonNameBase

 *	  TaxonomicTree

 *	  TermBase

 *	LanguageStringBase

 *	ReferencedEntityBase

 *	  NomenclaturalStatus

 *	  OriginalSourceBase

 *	  RelationshipBase

 *	  TypeDesignationBase

 *	TaxonNode

 *  WorkingSet

 *

 * TODO it should be configurable which objects can be annotated as this might differ in dataportals

 *

 */

function theme_cdm_annotation($cdmBase){

//    $annotationUrl = cdm_compose_annotations_url($cdmBase);

//

//	if($annotationUrl){

//		drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/cdm_annotations.js');

//		drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/jquery.form.js');

//		$annotationProxyUrl = url('cdm_api/proxy/'. urlencode($annotationUrl).'/cdm_annotation_content');

//	

//		$out = ' <span class="annotation">';

//		$out .= '<span class="annotation_toggle" rel="'.$annotationProxyUrl.'">+</span>';

//			

//	

//		$out .= '<div class="annotation_box"></div>';

//		$out .= '</span>';

//	}

    $annotationUrl = cdm_compose_annotations_url($cdmBase);

    if($annotationUrl){

        $annotationPager = cdm_ws_get($annotationUrl, null, null, null, true);

        foreach($annotationPager->records as $annotation){

	        $footnoteKey = FootnoteManager::addNewFootnote(RenderHints::getFootnoteListKey(), $annotation->text);

	        $out .= (isset($out)? ',' : '') . theme('cdm_footnote_key', $footnoteKey);

        }

    }

	return $out;

}

function theme_cdm_annotation_content($AnnotationTO){

	drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/cdm_annotations.js');

	drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/jquery.form.js');

	$out .= theme('cdm_list_of_annotations', $AnnotationTO->annotationElements);

	$annotationUrl = cdm_compose_url(CDM_WS_ANNOTATIONS, array($AnnotationTO->uuid));

	$annotationProxyUrl = url('cdm_api/proxy/'. urlencode($annotationUrl).'/cdm_annotation_post');

	// TODO users have to be authenticated to the dataportal to be able to write annotations

	$out .= '

  			<div class="annotation_create">

  				<form action="'.$annotationProxyUrl.'" method="POST">

  					<textarea name="annotation"></textarea>

  					<input type="hidden" name="commentator" value="">

  					<input type="submit" value="'.t('Save annotation').'" />

  				</form>

 			</div>

	';

	return $out;

}

function theme_cdm_list_of_annotations($annotationElements){

	$out = '<ul class="annotation_list">';

	foreach ($annotationElements as $key => $row){

		$created[$key] = $row;

	}

	array_multisort($created, SORT_ASC, $annotationElements);

	foreach ($annotationElements as $annotation){

		$out .= '<li>' . $annotation->text . '</li>';

	}

	$out .= '</ul>';

	return $out;

}

/* ============================ footnotes ============================= */

function theme_cdm_footnote_key($footnoteKey, $highlightable=true){

  $out = '<a href="#footnote-'.$footnoteKey.'" class="footnote-key footnote-key-'.$footnoteKey.'">'.$footnoteKey.'</a>';

  return $out;

}

function theme_cdm_footnote($footnoteKey, $footnoteText){

  _add_js_footnotes();

  $out = '<span class="footnote footnote-'.$footnoteKey.'"><a name="footnote-'.$footnoteKey.'"></a><span class="footnote-anchor">'.$footnoteKey.'.</span>&nbsp;'.$footnoteText.'</span>';

  return $out;

}

function theme_cdm_footnotes($footnoteListKey, $enclosingTag = 'span'){

	$out = '<'.$enclosingTag.' class="footnotes footnotes-'.$footnoteListKey.'">' . FootnoteManager::renderFootnoteList($footnoteListKey) . '</'.$enclosingTag.'>';

	return $out;

}

/* ============================ pager ============================= */

function theme_cdm_pager(&$pager, $path, $parameters){

	$out = '';

	if ($pager->pagesAvailable > 1) {

		$out .= '<div class="pager">';

		if($pager->currentIndex > 0){

			$out .= theme('cdm_pager_link', t('« first'), 0,  $pager, $path, $parameters, array('class' => 'pager-first'));

			$out .= theme('cdm_pager_link', t('‹ previous'), $pager->currentIndex - 1, $pager, $path, $parameters, array('class' => 'pager-previous'));

		}

		if($pager->indices[0] > 0){

			$out .= '<div class="pager-list-dots-left">...</div>';

		}

		foreach($pager->indices as $index){

			$label = $index + 1;

			$out .= theme('cdm_pager_link', $label, $index,  $pager, $path, $parameters, array('class' => 'pager-first'));

		}

		if($pager->indices[count($pager->indices) - 1] < $pager->pagesAvailable - 1){

			$out .= '<div class="pager-list-dots-right">...</div>';

		}

		if($pager->nextIndex){

			$out .= theme('cdm_pager_link', t('next ›'), $pager->nextIndex, $pager, $path, $parameters, array('class' => 'pager-next'));

			$out .= theme('cdm_pager_link', t('last »'), $pager->pagesAvailable - 1, $pager, $path, $parameters, array('class' => 'pager-last'));

		}

		$out .= '</div>';

		return $out;

	}

}

function theme_cdm_pager_link($text, $linkIndex, &$pager, $path, $parameters = array(), $attributes) {

	$out = '';

	$parameters['search']['page'] = $linkIndex;

	if ($linkIndex == $pager->currentIndex) {

		$out = '<strong>'.$text.'</strong>';

	} else {

		$queryString = drupal_query_string_encode($parameters);

		$out = l($text, $path, $attributes, $queryString);

	}

	return $out;

}

/* ============================ special buttons ============================= */

function theme_cdm_back_to_search_result_button(){

	$out = '';

	if($_SESSION['cdm']['search']){

		/*['cdm']['last_search']*/

		//$out .= '<div id="backButton">'.l(t('Back to search result'), $_SESSION ).'</div>';

		$out .= '<div id="backButton">'.l(t('Back to search result'), "http://" . $_SERVER['SERVER_NAME'] . $_SESSION['cdm']['last_search'] ).'</div>';

	}

	return $out;

}

function theme_cdm_back_to_image_gallery_button(){

	//$galleryLinkUri = path_to_taxon($taxon->uuid).'/images';

	//$gallery_name = $taxon->uuid;

	//$mediaList = cdm_ws_get(CDM_WS_PORTAL_TAXON_MEDIA, array($taxon->uuid, $prefMimeTypeRegex, $prefMediaQuality));

	$out = '<div id="backToGalleryButton">'.l(t('Back to Images'), $_SESSION['cdm']['last_gallery'] ).'</div>';

	return $out;

}

function theme_cdm_print_button(){

	drupal_add_js ('$(document).ready(function() {

         $(\'#print_button\').click(function () { 

         window.print();

     });

  });', 'inline');

	$output = '<div id="print_button"><img src="'

	.drupal_get_path('module', 'cdm_dataportal').'/images/print_icon.gif'

	. ' "alt="' . t('Print this page') . ' "title="'.t('Print this page').'" />'; //.t(' Print this page');

	//$output .= l(' Print this page', '');

	$output .= '<span>Print this page</span>';

	$output .= '</div>';

	return $output;

}

/* ============================ other ============================= */

//function theme_cdm_credits(){

//	return "";

//	$secRef_array = _cdm_dataportal_currentSecRef_array();

//	return '<span class="sec_reference_citation">'.$secRef_array['citation'].'</span>'

//	.( $secRef_array['period'] ? ' <span class="year">'.partialToYear($secRef_array['period']).'</span>' : '')

//	.( $secRef_array['authorTeam'] ? '<div class="author">'.$secRef_array['authorTeam']['titleCache'].'</div>' : '');

//}

function theme_cdm_dynabox($label, $content_url, $theme, $enclosingtag = 'li'){

	drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/cdm_dynabox.js');

	$cdm_proxy_url = url('cdm_api/proxy/'.urlencode($content_url)."/$theme");

	$out .= '<li class="dynabox"><span class="label" alt="'.t('Click for accepted taxon').'">'.$label.'</span>';

	$out .= '<ul class="dynabox_content" title="'.$cdm_proxy_url.'"><li><img class="loading" src="'.drupal_get_path('module', 'cdm_dataportal').'/images/loading_circle_grey_16.gif" style="display:none;"></li></ul>';

	return $out;

}

/* ============================ java script functions ============================= */

function _add_js_thickbox(){

	// ---- jQuery thickbox:

	/*

	* bug: compat-1.0.js && thickbox.js line 237 .trigger("unload")

	* -> event is not triggered because of problems with compat-1.0.js'

	* see INSTALL.txt

	*

	*/

	//drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/jquery.imagetool.min.js');

	drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/thickbox/thickbox.js');

	drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/js/thickbox/cdm_thickbox.css');

}

function _add_js_lightbox($galleryID){

	/*

	 * Important Notice:

	 * The jquery.lightbox-0.5.js has been modified in order to allow using the "alt" attribute

	 * for captions instead of the "title" attribute

	 */

	$lightBoxBasePath = drupal_get_path('module', 'cdm_dataportal') .'/js/jquery-lightbox-0.5';

	drupal_add_js($lightBoxBasePath.'/js/jquery.lightbox-0.5.js');

	drupal_add_css($lightBoxBasePath.'/css/jquery.lightbox-0.5.css');

	drupal_add_js ('$(document).ready(function() {

      $(\'#'.$galleryID.' a.lightbox\').lightBox({

        fixedNavigation:  true,

        imageLoading:     \''.$lightBoxBasePath.'/images/lightbox-ico-loading.gif\', 

        imageBtnPrev:     \''.$lightBoxBasePath.'/images/lightbox-btn-prev.gif\',    

        imageBtnNext:     \''.$lightBoxBasePath.'/images/lightbox-btn-next.gif\',   

        imageBtnClose:    \''.$lightBoxBasePath.'/images/lightbox-btn-close.gif\',  

        imageBlank:       \''.$lightBoxBasePath.'/images/lightbox-blank.gif\'

      });

    });

    ', 'inline');

}

function _add_js_footnotes(){

  drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/footnotes.js');

}

function _add_js_cluetip(){

	//TODO replace by http://www.socialembedded.com/labs/jQuery-Tooltip-Plugin/jQuery-Tooltip-Plugin.html

	drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/cluetip/jquery.cluetip.js');

	drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/jquery.dimensions.js');

	drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/cluetip/jquery.hoverIntent.js');

	drupal_add_css(drupal_get_path('module', 'cdm_dataportal').'/js/cluetip/jquery.cluetip.css');

	drupal_add_js ("$(document).ready(function(){

      $('.cluetip').css({color: '#0062C2'}).cluetip({

        splitTitle: '|',

        showTitle: true,

        activation: 'hover',

        sicky: true,

        arrows: true,

        dropShadow: false,

        cluetipClass: 'rounded'

      });

    });", 'inline');

}

function _add_js_ahah(){

	drupal_add_js(drupal_get_path('module', 'cdm_dataportal').'/js/ahah-content.js');

}