switching portal to real TaxonNodeDTOs
Merge tag '5.15.1' into develop
tagging release 1.15.1
ref #8134 using other error message channel
ref #9010 solving some problems regarding sources and annotations for TaxonNodes
ref #8134 dealing with web service problems returning list instead of pagers and better placement of footnotes
ref #9034 agent search page: adding LISD ExtensionTypeTerm uuid
ref #9034 simple agent search page with filter function by query parameter
ref #8972 switching type_designations_maps to kml
ref #8972, ref #8855, ref #4488 using kml response to show specimen points in maps with data in balloon popups with links
fix #8914 replacing parsed jetty error responses by null (also ref #2711)
ref #7766 order taxon relationships by type and scientific name, adapting tests
ref #5083 using iif taxon manifest service in dataportal
fixing PHPUnit setup for php 7 and documenting its usage with PHPStorm
fix #8766 improving display of statistical measures (sample size, variance, standart deviation)
fix #8658 position of all pseudo feature blocks configurable in relation to the chosen feature tree
php-doc: return value
ref #8657 Retain hierarchy information of description elements
ref #8657 Add webservice call to cdm_api.module
fix #8610 tagged_text_extract_nomstatus() can handle multiple status
fix #8594 support for Registration, occurrences, events in cdm_base_url(), sanitizing base ulrs in cdm_tagged_text_expand_entity_references() & better problem reporting
ref #8134 displaying textual type designations in the taxon synonymy and in the name page
ref #8166 using ternmType filter to restrict to feature trees only
ref #8166 adapting dataportal to TermTree novelties: using new term tree controller endpoints
ref #8406 dapting portal to renamed controller endpoint: taxon/{uuid}/specimensOrObservationDTOs --> taxon/{uuid}/fieldUnitDTOs
fix #8415 using /portal/name/{uuuid}/typeDesignationsInHomotypicalGroup service to speed up the type designation display
ref #8414 adapting portal to modified service mapping
ref #8406 clenaing and harmonization of the specimen related code in the dataportal
ref #7975 implementing settings for name relationship lists - all name rels enabled by default
fix #8366 full typedesignation display with map in registration page
fix #8352 name page showing registrations
fix #8351 showing type designations and map in name page
ref #8245 stripping trailing zeros in description element time priods, with test
fix #8321 finding taxa for a given name by matching whith the whole titleCache
removing service mock which has been applied for hotfix 5.7.3
Merge tag '5.7.3' into develop
tagging hotfix 5.7.3
mocking missing name/typeDesignationStatusFilterTerms for phycobank
ref #5857 showing show citation, rule considered, and citation of nomenclatural status in footnotes, adapting tests
ref #8318 processing of taxonname.taggedFullTitle for name rendering
implementing misspelling for ref #6523; implementing name rel type filter for direct and inverse edges for #5855
fix #7975 fix #8196 name relationships list representation implemented
fix #5855 improving name relations settings:
fix #7966 using the TypeDesignationStatusFilter to simplify the registration search by status type
implement blast search table for the result
ref #8166 adapting to change in FeatureNode property 'feature' becomes 'term' - 2
ref #8166 adapting to change in FeatureNode property 'feature' becomes 'term'
ref #3616 fixing multibyte character problem related to time periods
ref #8051 styling name and type in registration items to emphasize nature of nomencalatural act: \n - render options for tagged text cdm_tagged_text_add_options()
ref #6329 fixing bug in proxy_content() which could affect the display of sources and annotations in media galleries
ref #7977 display of specimen type designations and stableURIs
fix #7907 centalizing annotation filtering: - annotation type filter settings are general - render hint for reference page - cdm_fetch_visible_annotations() implemented
fix #7927 showing status of not published registrations
typo in comment
ref #7884 ref #7890 refactoring of name relations rendering and using name rels in the registration page
ref #7788 displaying registration date and institution - formatting the datetime
adding test case for no sensu but with Combination Authors and fixing according bug
ref #7759 adding more subtreefilter url patterns
ref #7759 adding more subtreefilter url patterns and commenting redundant patterns
fix #7759 implementing classification subtree filtering
ref #7658 fixing final problems in MAN display related to appendedPhrase, citationDetail, footnotes
ref #7658 miapplied names and invalid designations modified to use the taxonRelationshipsDTO webservice
ref #7658 moving all tagged text functions to separate file
ref #7658 adapting cdm_taxonRelationships() to new taxon relationship DTO webservice
work in grogress - unfinished
ref #7658 work in progress with errors
merge develop into feature branch
php doc
ref #7605 removing trailing space from tagged text markup
fix #7605 fixing probelms with space around separators by hamonizing with cdmlib reference implementation
fix #7602 expand TaggedText->entityReference objects
fix #7601 fixing timeperiod with only start value
first steps of specimen page with DTOs
base rank slecction with null option
ref #7495 basic version of reference page implemented
fix #7494 registration search form block and result page
fix #7552 rendering TaggedText.entityReference information as class attribute
fix #7417 defaults for TAXON_RELATIONSHIP_TYPES - bugfix
ref #7493 un-commenting SynonymTypes again
fix #7417 defaults for TAXON_RELATIONSHIP_TYPES and bumping module version number to 5.x
ref #7493 commenting unused constants of removed SynonymRelationshipTypes
fix #7108 supressing unwanted sourcetype in general
ref #6969 fixing bug in preferred media calculation
ref #6877 fetch full media object to compensate bug in portal/taxon/{uuid}/media
fix #6683 using cdm_preferred_media_representations for image viewer and fixing bugs in that method
ref #6700 adapting annotation fetch function to merged TaxonName class
ref #6432 more fine tuned inclusion of css.
CSS rules for admin/config/cdm_dataportal/settings are included on all settings rule. CSS rules for the debug block are attached to the debug block.
fix #6374 fixing messed up UUIDs and harmonizing use descriptions block creation
removing invalid uuid constant
ref #6374 fixing hard-coded uses feature uuid
ref #6301 sources as inline elements on media page
fix #6301 implementing display of sources and annotations for media
whitespace cleanup
ref #2985 implementing named area page to make area details like level accessible
ref #3061 using the full publication timePeriod instead of only start
ref #6222 adding ticket reference to comment
ref #6203 checked return types of classification services and updated documentation
ref #6201 adapting portal to changes in taxon/{uuid}/accepted service
fix #6115 adding missing permission check to cdm nodes integration
fix #5948 supressing media when uri is missing, also turning theme function into plain markup function
removing unsed permissions defined in cdm_api module