Release5.18
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task #3978: Specimenview path: Compact representation of exactLocation task #5427: implement automatic tests for all external links in the ext_links module feature request #5550: Add languages to the editable terms feature request #5873: Implement rights&roles for TaxEditor distribution editor bug #5907: Advanced Search for taxa: search results seem to be unordered feature request #8948: Specimen page: specimen description link to description details page feature request #980: Links to relevant external website(s) in taxon pages task #4338: [MASTER] Handle abbreviated title and protected cache correctly in TaxEditor feature request #3095: protect taxa and nodes feature request #3665: Further implementation of original spelling name caching feature request #3667: Implement correct implementation of original spelling in publications feature request #5050: revise the subAreaPreference rule for filtering Distributions feature request #9122: update shapefile mappings of TDWG areas to the merged shapefile tdwg_levels_1-4 bug #3732: adapt DerivedUnitBaseDetailElement and PreservationMethodMenuPreferences to cdm model changes bug #4299: Show error when permission is denied ... task #4564: [Post 3.4] Check if originalLabelInfo is handled correctly in CdmDataPortal feature request #7637: Handle intext references in CDM light bug #3370: ExternalLinks [ext-links]: External services: GBIF: add infraspecific taxa bug #5211: Error when creating new taxon /problem with sortindex in taxon tree feature request #3756: Check that MediaSpecimen are corretly handled in data portal feature request #5795: [DISCUSS] Do we need comb. ined. as a nomenclatural status? bug #6100: Name parser problems task #6137: Urgent imports bug #6356: taxontree sort order as in editor bug #6499: Remaining issues to include pages in bibliographic reference titleCaches feature request #6581: Make all microreferenced references OriginalSources feature request #6589: Handle protologue as original source with URI link task #6591: Use name used in source for original spelling feature request #7416: OriginalSourceBase.links should be shown in DataPortal task #9266: Remove protologue section from TaxEditor bug #6623: formatter for bibliografic citations with citationDetail feature request #6678: [DISCUSS] How to correctly show name relationship "orth. var." in dataportal feature request #6708: Open images from specimen table in separate tab and in a viewer task #6714: Create 001-cdm.h2.sql automatically bug #6766: maven profile to build cdm-vaadin for production purposes feature request #6774: Implement OWL export feature request #6849: [DISCUSS] How to handle "kind of" term creation in TermEditor feature request #6866: Improve specimen page bug #6947: Incorrect error for LSID field bug #7084: display SpecimenOrObservationBase.preferredStableUri in DataPortal bug #7107: "Omit level" in distribution hierarchy should not supress distributions source reference task #7356: setup selenium test suite for cdm-vaadin feature request #7432: Show default login only if the account has not been changed task #9219: Revert: requests with %2F in URL are rejected by apache bug #7577: Set Publish Flag for Subtree Dialog - Further Problems with Progressmonitor feature request #7580: User wishes: CharacterMatrix feature request #7675: Make columns with default values togglable feature request #7685: Add Selenium tests for specimen table in data portal bug #7690: adapt available typedesignation editors to name rank bug #7699: NPE when searching for specimen in bulk editor bug #7703: Multiple names cannot be shown in TypeDesignationDetailElement for specimens bug #7711: Bugs in media gallery feature request #7747: Enhance display for URI element bug #7781: original spelling is missing for accepted taxon in taxon page feature request #7860: [Master] Remaining E+M editor issues task #7862: improve documentation on TaxonGraphHibernateListener and related classes task #7890: Display of name relations in the data portal [master ticket] task #7917: Revise ReferenceSystemTerms bug #7943: TypeDesignationsEditor Select Reference for figure feature request #8471: Computed descriptions should be disabled in TaxEditor feature request #7980: Enhance matrix description aggregation bug #7990: Moving a feature via d&d does not make the Feature Tree Editor dirty bug #8027: Hibernate fails to obtain transaction-synchronized Session for thread and brings taxeditor in unrecoverable state bug #8035: Vaadin Collector team layout bug #8052: implement selenium tests for registration items lists task #8057: Upgrade to debian 10 bug #7936: Consider complete removal of redmine communication hub code bug #8068: Selenium test for Reference page task #8081: Complete removal of redmine communication hub instances feature request #8086: registration submission endpoint implemented feature request #8095: response model for registration submission webservice task #8087: improve response model of registration/identifier/{registrationID}/status.json web service task #8091: Discuss Referencetype PrintSeries with respect to user needs of PhycoBank and taxonomic projects bug #8105: better hotfix branch strategy in git flow to avoid commits in master which are missing in develop task #8109: Concept for linking from taxon entries to name pages feature request #8122: Implement selection of modifier vocabulary for structures and properties task #8130: Check if related feature data is cleared when supported facts type is changed bug #8132: phycobank cdm-server instance problems with db connections feature request #8137: Implement sources for type designations in data portal feature request #9117: show textual type information in registration page feature request #8165: enable logback jmx for cdm-server feature request #8181: Further features for bulk editors feature request #8187: Use Spring Environment instead of custom code in AbstractWebApplicationConfigurer feature request #8195: TaxonNamePopupEditor: offer Reference and RuleConsidered fields for replaced synonyms bug #8205: SpecimenTypeDesignationsEditor: Fist selection of mediaReference gets lost feature request #8207: RegistrationUI: helps avoid name duplicates bug #8221: When changing nomenclatural code the name detail elements are not available anymore bug #8233: [Follow up] Creating type duplicates feature request #8248: Implement OWL import bug #8254: Add term information to state dropdown in CharacterMatrix bug #8270: TermDTOs with an orderIndex are ordered in unordered term vocabularies bug #8277: Username (and other fields) should allow c&p feature request #8289: Add "Open in RefObj view" to term editor context menu feature request #8307: display fossil in the context of the taxon name feature request #8308: Extend specimen type designation editor feature request #8309: Implement preferences with predicate and subject in local preferences bug #8326: update labels for is blocking name and is isonym bug #8338: Newly created structural modifier terms are not available in details view feature request #8339: Completely remove the potentially redundant 'acceptedFor' parameter from synonym page bug #8364: ext-links module: problems bug #8367: Advanced media view is not available for media edited not edited in media details view bug #8371: When creating a new term for a vocabulary the term should have the focus afterwards feature request #8378: Show placeholder for asynchronously loaded images in details view report #8379: Review strange specimen implementations feature request #8396: make "not in classification warning" configurable task #8419: harmonization of the different specimen representations feature request #8411: additional requirements for export/import path selection feature request #8412: Remaining issues for cdm light export (II) bug #8416: Array to string conversion problem in render array produced for specimen page bug #8417: LazyInitializationException in TermDTO for media bug #8421: icons in compose_specimen_table_top_down() are not visible bug #8423: OccurrenceServiceImpl.findFieldUnitDTO() fails to merge derivation paths when a FieldUnit has two derivatives bug #8431: missing status bar for cdm light export feature request #8432: Improve "default" feature tree handling feature request #8450: Character matrix UX task #8455: Show specimen preferredStableURL as external link icon? task #8458: document FieldUnitDTOOccurrenceServiceImpl.findFieldUnitDTO() feature request #8469: Open PolytomousKeyGenerator issues feature request #8474: Make TermCollection.orderRelevant usable for TermTrees feature request #8476: Implement support for TermCollection.isFlat in TaxEditor feature request #8478: Follow up ticket for update empty name in source handling in TaxEditor bug #8776: Open issues for TermCollection.allowDuplicates handling in TaxEditor bug #8492: Adapt CsvNameExport to rollback only and generally review where and how it should be used bug #8493: hide taxon page general tab TOC block if empty bug #8494: Better ABCD Preferences Page task #8501: setup OWASP vulnerability checker for projects task #8391: Name page shows complete name information (II) bug #8510: Non unique object exception when creating FeatureStates feature request #8529: [DISCUSS]Display of aggregated descriptions bug #8530: Multiple Representation Exceptions when editing Textual Type Designations bug #8547: Default type of a newly created inReference should depend on the type of the reference feature request #8554: Allow drag&drop from character into FeatureTrees bug #8571: PolytomousKeyNode.otherNode not editable in TaxEditor bug #8620: Improve pro parte synonym search for dataportal task #8635: install collectd + facette for server monitoring bug #8659: Taxon navigator: not refreshed after ABCD file import bug #8660: Generic menu creation for Term trees task #8671: Distribution in E+M (BM) on different levels task #8672: Source handling during (distribution) aggregation bug #8681: Fix sect. parsing bug #8687: Description page must show all DescriptionElement subclasses bug #8691: Remaining issues for asynchronous image loading feature request #8700: Geofilter for DescriptiveDataSets should be used for taxon nodes AND specimens feature request #8707: Use NAT Table for specimen search result feature request #8708: Sort taxa in distribution editor same as in navigator task #8716: Configure taxeditor to run with GTK2 in linux bug #8717: Improve display of PolytomousKey nodes which have a feature bug #8728: Specimen import via BioCASE silently fails feature request #8742: Allow deleting vocabularies bug #8751: Replace saveOrUpdate() in AbstractTermTreeEditor bug #8767: Change Synonym to Misapplied Name handles publish flag not correctly feature request #8769: Biocase import configuration should be shown when clicking on import button bug #8774: Reimplement term tree editors to implement the general save strategy feature request #8775: Improve (rapid) data entry into characater matrix for categorical data feature request #8777: Make visiblity of CDM Source configurable task #8811: Open issues for "Add distribution aggregation to set subtree menu" bug #8814: Clean implementation for permissions with combination of Taxonnode and other permissions task #8818: Remaining issues for DB preferences feature request #8819: import cf. and aff. names as child taxa of the mentioned genus task #8820: Improve BioCase provider selection list feature request #8822: Handle exceptions caused by sortinex problems in cdm light export feature request #8823: Better exception handling in cdm light export bug #8824: No dirty flag when adding new factual data set bug #8831: saving name editor throws NPE task #8835: DISCUSS if the UPDATE & DELETE permission stategy should become a general principle in the cdmlib bug #8837: Name editor is not updated after change accepted to synonym task #8841: clean up application context configuration bug #8851: display of name facts not appropriate in all cases feature request #8854: Choose new base font size for the portal bug #8859: RegistrationItemNameAndTypeButtons invalid regex pattern feature request #8865: more external-links to be implemented feature request #8883: additional media list services as iiif manifest service feature request #8884: iiif manifest service: enrich metadata with information provided by other iiif image servers feature request #8869: Multilanguage Support for terms in editor task #8871: Remaining issues to unify description aggregation methods bug #8874: move taxon is reverted when taxon is edited afterwards bug #8878: Author selection dialog does not work on abbrev author title bug #8880: No classification parameter selected for DwC-A export feature request #8882: adapt search to handle protected or not protected titleCaches bug #8887: New issues for preference pages feature request #8889: Remaining issues for distribution editor - continue feature request #8893: Multi select for open in bulk editor bug #8898: remaining problems with closed/open facts/media view when opening name editor or distribution editor feature request #8902: Add "open in" menu to row menu in matrix editor task #8908: Clean up descriptive dataset data for Cactaceae feature request #8920: Make reference URL available in details view bug #8921: Set sec for subtree not always successful feature request #8922: Make setting of sec-Reference configurable when moving synonyms. task #8928: Swap menu entries for specimen bulk editors feature request #8929: Add "open folder" button to file/folder based exports feature request #8930: Taxon navigator should show icon if a taxon is unpublished feature request #8931: Taxeditor supports https bug #8932: Swagger does not distinguish overloaded controller endpoints bug #8935: Specimen Table: improved and more complete details row for character data bug #8944: Handle org.springframework.security.authentication.DisabledException explicitely feature request #8947: support multiple values of statistical value type ExactValue bug #8949: Open new fact in factual data view and set focus to main field in details view. task #8952: Change data set to dataset bug #8953: Focus not correctly evaluated for details view when switching between names bug #8955: After saving a taxon the taxon navigator scrolls the taxon to the bottom feature request #8960: Use explicit icon for accepted taxa being basionyms bug #8965: Separator missing for aggregated descriptions of higher character tree nodes feature request #8967: Improve label for cloned descriptions feature request #8968: filter Bulk editor for created by bug #8970: Moving a taxon to another position often closes the parent nodes bug #8971: Long running tasks in taxon navigator should disable the navigator task #8973: [DISCUSS] Should description tables reflect the feature tree hierarchy and/or empty feature nodes? task #8974: [DISCUSS] Should freetext descriptions reflect the feature tree hierarchy and/or empty feature nodes? bug #8976: error in tagged_text_extract_reference_and_detail() feature request #8980: Type specimen editor, collection data field misused by users bug #8984: Registration search result list: Format display of two type specimens feature request #8989: Implement flowering periods (temporal facts) in dataportal task #8992: Configure Apache to treat dataportal URLs as case insensitiv feature request #9002: Find suitable symbols for excluded, unplaced, placement doubtful bug #9007: Enable i18n support for media description UI bug #9012: Taxon Navigator does not refresh after moving a taxon between classifications bug #9015: Comparator for Character Matrix creates strange result bug #9021: Feedback for missing rights on TaxonNode missing bug #9028: Endless loop when opening the context menu of name facts task #9062: Remove StatisticalMeasurementValue.value_old bug #9039: When canceling TaxEditor update no new versions are found anymore feature request #9042: EnumTerm symbol and message in web service response feature request #9048: Checking number of synonyms when paste them into name editor bug #9050: Context menu item new should be disabled for missing rights bug #9051: Creating a new user with missing rights results in two message-boxes feature request #9054: Allow adding taxon descriptions to matrix for taxa which have no specimen descriptions attached yet bug #9056: Entering a year in timeperiod element recalculates the textfield in strange way bug #9073: Configuring the matrix view throws HTTP invoker exception bug #9074: Specimen missing a collector + n° and missing a collection identifier (Barcode, Accession number) not identifiable in descriptive Matrix bug #9075: Exact values in descriptive matrix label provider should be ordered bug #9077: Handle "Show details" in context menu of name editor differently feature request #9079: Move supported and available for parts of feature detail element to sections feature request #9080: Use detailElement of quantitative data in dialog of character matrix task #9082: Update script for old empty Partials handling bug #9083: Improve authorization handling in synonym details view (and generally) feature request #9089: Show descriptive datasets in description details view feature request #9090: Implement external links for identifiable entities in TaxEditor feature request #9091: Show external links for identifiable entites bug #9093: Excpetion after deleting two references bug #9103: missing exception handling in TaxoNodeDto feature request #9114: Handle malformed URIs in user type bug #9199: Adapt TaxEditor to switch to originalSource for remaining single sourced objects task #9222: Adapt dataportal to switch to originalSource for remaining single sourced classes task #9120: Update script for flowering period supports temporal data feature request #9121: Add abbreviations to Feature task #9123: Test if BigDecimal algebra is correct in Aggregation and PolytomousKey algorithms bug #9124: Altitude feature should have [m] as measurement unit by default task #9132: Update cyprus images to Scaler default API and add thumbnails bug #9133: cdm_taxontree active taxon is focused after page reload bug #9136: Make Institution creatable where needed feature request #9139: When deleting a taxon with images the configuration should also handle the image bug #9140: Deleting an images forgets moving operation task #9141: setup IP connection rate limiting per IP adress bug #9142: The Agent search dialog shows duplicated entries bug #9143: Distribution data sources are missing if multiple distributions exist task #9144: Enable org.eclipse.jetty.io.ConnectionStatistics jmx bean and collect request statistics with collectd task #9130: add default copyright statment to IIIF manifest as attribution to the sequence bug #9149: NPE when saving hybrid formula bug #9151: invalid pager information in /description/namedAreasInUse webservice feature request #9153: Handle additional information in image metadata feature request #9154: Further reduce TaxEditor size by cleaning up dependencies and making taxeditor.webapp plugin optional bug #9156: Searching for a taxon in the PolytomousKey perspective results in AssertionFailure bug #9157: Further improve deduplication of names task #9161: E+M shapefile with Kaukasus regions bug #9164: occurrence maps do not resprect max zoom level feature request #9177: Make the order in drop down for status and namerelationships configurable bug #9184: WSOD in advanced search cdm_dataportal/search task #9189: Move datasource view to taxeditor.webapp feature request #9190: Make taxeditor.webapp a loadable plugin not installed by default feature request #9192: Layout issues for source in taxonnode details feature request #9194: Make RelationshipBase and NomenclaturalStatus reference OriginalSource feature request #9200: extend application possibilities of MediaService.readResourceMetadataFiltered() task #9201: Titelcache creation for nested collections - DISCUSS task #9203: Filter out generated MediaRepresentations if a part with exactly the same URL already exists. feature request #9204: Update cdmlib and taxeditor dependencies task #9205: Remove apache-log4j-extras from TaxEditor dependencies task #9206: Solve cglib vs. cglib-nodep task #9207: update ehcache dependency and handle hibernate-ehcache task #9208: Move cdmlib-print and cdmib-remote to taxeditor.printpublisher feature request #9209: name page, registration page: show annotations for names and fieldunits bug #9210: invalid format string usage in MediaAutoInitializer bug #9212: swagger-ui invalid try out URLs under HTTPS bug #9213: specimen views 'compressed table' and 'derivate tree' fail when no fieldunits exists bug #9215: Drop down for empty rank does not work bug #9217: swagger-ui slow in Cromium and freezes Firefox bug #9218: Change /registrationDTO/identifier/... signatures to use query parameters instead bug #9220: adapt dataportal to /registrationDTO now using identifier as query parameter and secure against CVE-2007-0450 vulnerability bug #9223: make changes of nomenclatural references detectable again in TaxonGraphBeforeTransactionCompleteProcess feature request #9224: openlayers map handles server error per layer and presents a user message feature request #9225: Make TaxonName.nomenclaturalSource a new DescriptionElementSource subclass task #9227: corrected entry cannot be saved task #9228: Adaptations to allow editing Centaurea in Flora of Greece feature request #9229: TaxonNameEditor: use NomenclaturalStatusDTO to avoid data loading probems within setters in TaxonName bug #9230: Type in preparation of a published name displayed in PhycoBank Portal Name Page task #9231: Create statistics for Euro+Med bug #9234: Error: Object of class stdClass could not be converted to string caused by compose_cdm_specimen_or_observation_tree_entry() bug #9235: Footnote key for multiple cdm entities need to be rendered together bug #9237: FeatureTree SortIndex updater creates wrong sortindex bug #9238: pure entities in DerivateDTO.derivates may cause LIEs bug #9240: nomenclatural status missing in name and registration page bug #9241: replace/adapt descriptionPart in render templated bug #9245: Creating derived units from existing derived unit is not possible in specimen tree editor feature request #9249: compact display of collection information task #9252: Harmonize SpecimenOrOberservationBase related DTOs task #9253: revise OccurrenceServiceImpl.findFieldUnitDTO(..) bug #9254: portal/occurrence/{uuid}/fieldUnitDTO.json fails with class cast exception bug #9256: CdmLightExport: NameTypeDesignation string misses parenthesis for authors bug #9257: revise filtering in OccurrenceServiceImpl.assembleFieldUnitDTO(FieldUnit fieldUnit) by SpecimenOrObservationType.PreservedSpecimen feature request #9258: Use Partial for date in FieldUnitDTO task #9259: reduce fields in TermBase json serializations bug #9260: error in pages.inc calling compose_taxon_node_status() bug #9261: LazyInitializationException (LIE) in TaxonController.doGetTaxonNodes() feature request #9262: Several open issues for cdmlight export related to Cactaceae and other Caryophallales task #9265: Adapt dataportal to new protologue handling bug #9267: No sec reference for move change Synonym to accepted Taxon task #9269: discuss with the flora of greece people if the new image viewer is to be activated feature request #9270: show original spelling on taxon page feature request #9279: Improve type designation formatting and TypeDesignationSetManager task #9280: Refactor: IKeyTerm.getMessage() --> IKeyTerm.getLabel() bug #9281: Set basionym not available for heterotypic synonyms after drag & drop feature request #9282: Add nomenclatural standing bug #9286: Re-connect and change user should be disabled if no datasource is connected yet bug #9287: Show term details in details view of term editor bug #9289: LazyInitializationException (LIE) in NameTypeDesignationEditor feature request #9297: Improve name of zip file for cdmLightExport feature request #9298: Preference for IDinSource, IdNamespace and original information in nomenclatural reference details view feature request #9299: Add LSID to author and reference details bug #9302: Phycobank related issues for TypeDesignation formatting task #9306: Registration result list: supress "designated by" reference in portal feature request #9307: Preferences for display of termtrees and entries bug #9313: LazyInitializationException (LIE) in TaxonNamePopupEditor bug #9317: Handle NameTypeDesignations on name basis not on homotypic group basis in outputs bug #9318: TaxonNameEditor: nomenclatural reference no longer selectable task #9319: adapt name render templates to new nomenclatural source which also contain protologues as external links bug #9322: Remove invalid designation taxon relationship bug #9335: termTree webservice response misses titleCache
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