EDIT: Issueshttps://dev.e-taxonomy.eu/redmine/https://dev.e-taxonomy.eu/redmine/redmine/favicon.ico?14691914852017-02-22T14:55:46ZEDIT Project Management
Redmine bug #6430 (Closed): proxy_content not returning datahttps://dev.e-taxonomy.eu/redmine/issues/64302017-02-22T14:55:46ZSaskia Gennrichbug #6397 (Closed): palmweb: various feature blocks missinghttps://dev.e-taxonomy.eu/redmine/issues/63972017-01-30T09:46:05ZAndreas Kohlbecker
<p>In the palmweb portal various feature blocks are missing.</p>
<p>At the example of <em>Calamus aruensis</em>:</p>
<p>This taxon has data for the 10 feature types, but only a few are currently shown (in bold) in the portal:</p>
<ul>
<li><strong>Distribution</strong></li>
<li>Image</li>
<li><strong>Common Name</strong></li>
<li>Conservation</li>
<li>Discussion</li>
<li>Biology And Ecology</li>
<li>Description</li>
<li>Materials Examined</li>
<li><strong>Uses</strong></li>
<li><strong>Distribution</strong></li>
</ul>
<p>The web service returns the data correctly:</p>
<pre>http http://api.cybertaxonomy.org/palmae/portal/descriptionElement/byTaxon\?taxon\=1d91bd71-7109-4916-872f-a82b710a9cdf features\=d3c4cbb6-0025-4322-886b-cd0156753a25%2C89d3b005-9876-4923-89d9-60eb75b9583b%2C8200e050-d5fd-4cac-8a76-4b47afb13809%2C99b2842f-9aa7-42fa-bd5f-7285311e0101%2C5deff505-1a32-4817-9a74-50e6936fd630%2C910307f1-dc3c-452c-a6dd-af5ac7cd365c%2Ce5374d39-b210-47c7-bec1-bee05b5f1cb6%2Ca7786d3e-7c58-4141-8416-346d4c80c4a2%2Cd43d8501-ceab-4caa-9e51-e87138528fac%2Cf0f94c5c-a5ae-47d2-9c46-8a9c704973d3%2C86d40635-2a63-4ad6-be75-9faa4a6a57fb%2C489bf358-b78a-45e2-a691-f9f3f10446ce%2Cf59e747d-0b4f-4bf7-b69a-cbd50bc78595%2C555a46bc-211a-476f-a022-c472970d6f8b%2C7c0c7571-a864-47c1-891d-01f59000dae1%2Cfc810911-51f0-4a46-ab97-6562fe263ae5%2C4518fc20-2492-47de-b345-777d2b83c9cf%2Cdd653d48-355c-4aec-a4e7-724f6eb29f8d%2C1e87d9c3-0844-4a03-9686-773e2ccb3ab6%2Ce75255ca-8ff4-4905-baad-f842927fe1d3%2Ca677f827-22b9-4205-bb37-11cb48dd9106%2C6e9de1d5-05f0-40d5-8786-2fe30d0d894d%2Cbd9aca17-cd0e-4418-a3a1-1a4b80dbc162%2C%2Ce28965b2-a367-48c5-b954-8afc8ac2c69b%2Caa923827-d333-4cf5-9a5f-438ae0a4746b%2C002d05f2-fd72-49f1-ba4d-196cf09240b5%2C9fdc4663-4d56-47d0-90b5-c0bf251bafbb%2C1e5ac518-3f6d-4a5c-ad9b-fc81a077e9f4%2Cb5780b45-6439-4f3c-9818-d89d26d36eb2%2C6f677e98-d8d5-4bc5-80bf-affdb7e3945a%2C84193b2c-327f-4cce-90ef-c8da18fd5bb5%2C6acb0348-c070-4512-a37c-67bcac016279%2C94213b2c-e67a-4d37-25ef-e8d316edfba1%2C9087cdcd-8b08-4082-a1de-34c9ba9fb493%2C8125a59d-b4d5-4485-89ea-67306297b599%2C89423317-b00a-46de-a34f-fe156d93dfc0%2Cfb16929f-bc9c-456f-9d40-dec987b36438%2C86bd920d-f8c5-48b9-af1d-03f63c31de5c%2C9832e24f-b670-43b4-ac7c-20a7261a1d8c\&pageNumber\=0\&pageSize\=500 | jq '.records[].feature.titleCache'
</pre> feature request #6301 (Closed): Display of sources for imageshttps://dev.e-taxonomy.eu/redmine/issues/63012016-12-23T10:45:41ZAndreas Müller
<p>Currently sources are not displayed for images in the dataportal. This is probably needed for Salvador and generally critical as sources should always be cited at least if they are of type PrimaryMediaSource.</p>
bug #6296 (Closed): Simple search for common names returns duplicateshttps://dev.e-taxonomy.eu/redmine/issues/62962016-12-22T13:05:18ZAndreas Kohlbecker
<p>This is a bug the cdmlib-services</p>
<p>For example:</p>
<pre>http -b http://api.cybertaxonomy.org/salvador/portal/taxon/find.json\?doTaxaByCommonNames\=1\&doMisappliedNames\=0\&doSynonyms\=0\&doTaxa\=0\&pageNumber\=0\&pageSize\=25\&query\=amate\&tree\=b010c84d-6049-45f4-9f13-c065101eaa26 | jq '.records[].titleCache'
</pre>
<p>NOTE: The <code>http</code> command is from <a href="https://github.com/jkbrzt/httpie" class="external">httpie</a></p>
<p>Broken queries:</p>
<ul>
<li><a href="http://api.cybertaxonomy.org/flora_cuba/portal/taxon/find.json?doTaxaByCommonNames=1&doSynonyms=1&doTaxa=1&pageNumber=0&pageSize=25&query=Dioscorea&tree=5de394de-9c76-4b97-b04d-71be31c7f44b">http://api.cybertaxonomy.org/flora_cuba/portal/taxon/find.json?doTaxaByCommonNames=1&doSynonyms=1&doTaxa=1&pageNumber=0&pageSize=25&query=Dioscorea&tree=5de394de-9c76-4b97-b04d-71be31c7f44b</a></li>
<li><a href="http://api.cybertaxonomy.org/salvador/portal/taxon/find.json?doTaxaByCommonNames=1&pageNumber=0&pageSize=25&query=amate&tree=b010c84d-6049-45f4-9f13-c065101eaa26">http://api.cybertaxonomy.org/salvador/portal/taxon/find.json?doTaxaByCommonNames=1&pageNumber=0&pageSize=25&query=amate&tree=b010c84d-6049-45f4-9f13-c065101eaa26</a></li>
</ul>
<p><strong>TODO</strong>: </p>
<ol>
<li>Implement tests for theses search mode combinations. DONE: <a class="changeset" title="ref #6296 more tests for findByTaxaAndName" href="https://dev.e-taxonomy.eu/redmine/projects/edit/repository/cdmlib/revisions/cc95089bbf829679ce7e4c80c0a611b622bd6081">cdmlib|cc95089</a> </li>
<li>fix the bug</li>
</ol>
feature request #6292 (Closed): IAPT-Data Registration datehttps://dev.e-taxonomy.eu/redmine/issues/62922016-12-20T17:23:24ZWolf-Henning Kusber
<p>In IAPT there are normally dates such as dd.mm.yy (dd.mm.yyyy is only used by Office Eghan=Index Fungorum, not relevant for PhycoBank)</p>
<p>Years in IAPT-database for algae are ".98" and ".99" only.</p>
<p>Change .98 to .1998 </p>
<p>Change .99 to .1999 </p>
<p>Result will be a full date in German format. <br>
(Wishlist: ISO standard as yyyy-mm-dd -> new ticket)</p>
<p>This needs to be done in the phycobank drupal module</p>
bug #6291 (Closed): allow hiding the classification information from the search resultshttps://dev.e-taxonomy.eu/redmine/issues/62912016-12-20T16:37:32ZAndreas Kohlbecker
<p>allow hiding the classification information from the search results when the search is not limited to one classification</p>
bug #6290 (Closed): style Phycobank registration data in tabular stylehttps://dev.e-taxonomy.eu/redmine/issues/62902016-12-20T16:35:36ZAndreas Kohlbecker
<p>Either style the definition list like it is described in see <a href="http://stackoverflow.com/questions/1713048/how-to-style-dt-and-dd-so-they-are-on-the-same-line?noredirect=1&lq=1#answer-21261303">http://stackoverflow.com/questions/1713048/how-to-style-dt-and-dd-so-they-are-on-the-same-line?noredirect=1&lq=1#answer-21261303</a> or use a table instead</p>
feature request #6288 (Closed): harmonize CommonName feature block elementshttps://dev.e-taxonomy.eu/redmine/issues/62882016-12-20T10:00:03ZAndreas Kohlbecker
<ol>
<li>The area label should be in its own <code>span</code> dom element with class attribute <code>area-label</code></li>
<li><del>The area label and language label are properties of the description element and thus should go inside of the <code>DescriptionElement-CommonTaxonName</code> <code>span</code> element.</del> --> rejected! This makes no sense since the common names are grouped by name, so the lables must be separate.</li>
</ol>
<p>Once implemented apply the following css to the salvador portal:</p>
<pre><code class="css syntaxhl"><span class="nf">#block-cdm-dataportal-feature-common-name</span> <span class="nc">.language-area-label</span> <span class="p">{</span>
<span class="nl">display</span><span class="p">:</span><span class="nb">none</span><span class="p">;</span>
<span class="p">}</span>
</code></pre>
<p>... and consider setting the areas again in the salvador DB.</p>
bug #6283 (Closed): Exceptions when editing polytomous keyhttps://dev.e-taxonomy.eu/redmine/issues/62832016-12-15T10:09:32ZKatja Luther
<p>Hallo Katja,</p>
<p>ich habe mich dieses Jahr doch noch an neuen Schlüsseln versucht. Bei Orchis gab es ein paar Fehlermeldungen, die ich aber stets durch Neusortieren des Schlüssels, abspeichern, schließen und wiederöffnen austricksen konnte. Natürlich funktionierte das ausgerechnet vor dem letzten Schlüsselpunkt nicht mehr. Jetzt bekomme ich Orchis gar nicht mehr geöffnet. Kannst Du bei Gelegenheit mal schauen und wiederbeleben? Ich würde den Rest dann dranheften.</p>
<p>Vielen Dank und schöne Grüße<br>
Ralf</p>
feature request #6278 (Closed): add sec reference as class attribute to all taxon markuphttps://dev.e-taxonomy.eu/redmine/issues/62782016-12-13T15:23:09ZAndreas Kohlbecker
<p>This is needed to be able to style the taxa related to a specific scref differently. The taxa with the 'phycobank' secRef should be styled with grey font color.</p>
feature request #6275 (Closed): Phycobank - DataPortal: display registration data stored in name ...https://dev.e-taxonomy.eu/redmine/issues/62752016-12-13T12:58:25ZAndreas Kohlbecker
<p>show below Name and footnote as string as in IAPT</p>
bug #6260 (Closed): media page: rights stored in the cdm are not displayedhttps://dev.e-taxonomy.eu/redmine/issues/62602016-12-08T13:52:31ZAndreas Kohlbeckerbug #6259 (Closed): Media page problems with multiple media representationshttps://dev.e-taxonomy.eu/redmine/issues/62592016-12-08T13:51:46ZAndreas Kohlbecker
<p>Example: <a href="http://portal.cybertaxonomy.org/salvador/cdm_dataportal/media/9a650031-04cc-48dc-a68b-8d67350423d6/8bd66e44-5eea-46e6-8e6b-d1e535bc5b1a/0">http://portal.cybertaxonomy.org/salvador/cdm_dataportal/media/9a650031-04cc-48dc-a68b-8d67350423d6/8bd66e44-5eea-46e6-8e6b-d1e535bc5b1a/0</a></p>
<p>Problems:</p>
<ul>
<li>representations have all the same URL</li>
<li>details of part (dimensions) must move into representation</li>
<li>The thumbnail is preferred over the full resolution image</li>
<li>rights stored in the cdm are not displayed</li>
</ul>
feature request #4490 (Closed): Make the label of the taxon page tabs customizable for portal adminshttps://dev.e-taxonomy.eu/redmine/issues/44902014-11-20T11:05:17ZPatrick Plitzner
<p>For the specimen tab:</p>
<p>"I think that "Specimens" might be a good default and only if you also handle observations you may change the label if you want.(a.mueller, see comment 2)"</p>
<p>once this is implemented and release the following adaptions are to be applied:</p>
<ul>
<li><p>Campanula: Specimens --> Specimens & Observations</p></li>
<li><p>Rubiaceae de Mexico: Synonymie --> Nomenclature</p></li>
</ul>
bug #4223 (Closed): Advanced search returns unexpected resultshttps://dev.e-taxonomy.eu/redmine/issues/42232014-05-19T16:09:54ZAndreas Müller
<p>Advanced search on Tab 'Advanced' for a taxon name returns all names relevant for a part of the search. E.g. search "Lactuca triquetra" returns returns all Lactuca taxa, not only Lactuca triquetra (and non existing children). As this field is called name search but not free/full text search this for me is unexpected behaviour.</p>
<p>Example taken from cichorieae database.</p>
<p>see also #4220</p>
<p>another example from the corvidae portal: </p>
<p>searching for "Garrulus americanus" across all classifications. I did expect one or two hits, but 58 are shown.</p>
<p><a href="http://dataportal.corvids.de/cdm_dataportal/search/results/taxon?ws=portal/taxon/search&query=Garrulus%20americanus&form_build_id=form-9raXidnUH8s5CGU_jKUD3iTs-x7hr1xWqv_uw6eRMXc&form_token=3Etv6Yq6fRNRWeLguLb5ym83Qru9kF4Xahi3b2A2stI&form_id=cdm_dataportal_search_taxon_form_advanced&search%5BpageSize%5D=25&search%5BpageNumber%5D=0&search%5Bareas%5D%5Bareas_filter%5D=&search%5Btree%5D=NONE&search%5BdoTaxa%5D=1&search%5BdoSynonyms%5D=1&search%5BdoTaxaByCommonNames%5D=1&pager%5BpageNumber%5D=0">http://dataportal.corvids.de/cdm_dataportal/search/results/taxon?ws=portal/taxon/search&query=Garrulus%20americanus&form_build_id=form-9raXidnUH8s5CGU_jKUD3iTs-x7hr1xWqv_uw6eRMXc&form_token=3Etv6Yq6fRNRWeLguLb5ym83Qru9kF4Xahi3b2A2stI&form_id=cdm_dataportal_search_taxon_form_advanced&search[pageSize]=25&search[pageNumber]=0&search[areas][areas_filter]=&search[tree]=NONE&search[doTaxa]=1&search[doSynonyms]=1&search[doTaxaByCommonNames]=1&pager[pageNumber]=0</a></p>