EDIT: Issueshttps://dev.e-taxonomy.eu/redmine/https://dev.e-taxonomy.eu/redmine/redmine/favicon.ico?14691914852024-01-12T16:27:18ZEDIT Project Management
Redmine task #10450 (New): Handle zip-files consistent in list exportshttps://dev.e-taxonomy.eu/redmine/issues/104502024-01-12T16:27:18ZAndreas Müller
<p>The handling of zip-files differs in the list exports (cdm-light, coldp, wfo-classification and dwc-a export).</p>
<p>For coldp (and maybe the coming wfo-classification) export it allows selecting a folder and defines a default file name for the zip-file while only at the second page of the assistant one can choose to create a zip-file or not. This should be at the same page. Also when selecting "Create zip-file" it should show the "Select folder for exported files" option while when unselecting "create zip-file" it should show the file selection dialogue which then possibly opens the a browser and allows to choose a filename using OS functionality for this.</p>
<p>We should keep the default for zip-creation as "don't" for cdmlight but "do" for the others as dwc-a and coldp by default are handled as zip-files.</p>
<p>For the ordinary dwc-a export we need to check if it is easy to implement to also allow creation of an unzipped version.</p>
feature request #10449 (Closed): Allow filtering out synonyms in list exportshttps://dev.e-taxonomy.eu/redmine/issues/104492024-01-12T16:09:27ZAndreas Müller
<p>Currently this should be implemented for cdm-light, coldp, wfo-classification and dwc-a export</p>
feature request #10448 (Closed): Implement WFO Backbone export in TaxEditorhttps://dev.e-taxonomy.eu/redmine/issues/104482024-01-10T10:05:18ZAndreas Müller
<p>see <a class="issue tracker-5 status-3 priority-10 priority-lowest" title="feature request: WFO Backbone export (Resolved)" href="https://dev.e-taxonomy.eu/redmine/issues/10446">#10446</a> for details</p>
feature request #10273 (In Progress): WFO content export (DwC-A)https://dev.e-taxonomy.eu/redmine/issues/102732023-03-15T10:00:37ZAndreas Müller
<p>DwC-A export for WFO (World Flora Online). This includes the specific WFO DwCA format. It also inlcudes an area mapping to TDWG areas if distribution is included.</p>
<p>The export may only include content. Tax. Backbone export may be implemented via CoL-DP (or a DwC-A backbone export) (see <a class="issue tracker-5 status-2 priority-12 priority-high14" title="feature request: Implement CoL-DP export (In Progress)" href="https://dev.e-taxonomy.eu/redmine/issues/10271">#10271</a>).</p>
<p>Attached is the E+M->TDWG mapping. We need to discuss how this can be included in the export and how to map areas that map to >1 TDWG area.</p>
<p>Open issues:</p>
<ul>
<li>Area mapping for not TDWG/Country distributions</li>
<li>Feature mapping for non CDM features</li>
<li>measurementOrFact</li>
<li>Tests</li>
<li>discussion about the other features</li>
<li>images</li>
<li>...</li>
</ul>
bug #9980 (New): Implement a checkbox to distinguish between export the whole subtree or only the...https://dev.e-taxonomy.eu/redmine/issues/99802022-03-16T13:24:19ZKatja Luther
<p>from <a class="issue tracker-5 status-5 priority-11 priority-default closed" title="feature request: Allow all filters for DwCA export in TaxEditor (Closed)" href="https://dev.e-taxonomy.eu/redmine/issues/6800">#6800</a> <br>
the subtree filter should be available now, please review. To filter on taxa, you have to click on taxonnodes without children.<br>
if it should also be possible to export only the parents of a subtree, we need to add a checkbox in the wizard that only the selected taxonnodes without their children should be exported.</p>
<p>The checkbox has to be implemented.</p>
feature request #8929 (New): Add "open folder" button to file/folder based exportshttps://dev.e-taxonomy.eu/redmine/issues/89292020-04-02T21:43:19ZAndreas Müller
<p>e.g. for DwC-A export and CDMLight but maybe also for other exports.</p>
<p>The button should appear on the result dialogue.</p>
feature request #8891 (Closed): Add categorical and quantiative data to DwC-Ahttps://dev.e-taxonomy.eu/redmine/issues/88912020-03-13T11:32:21ZAndreas Müller
<p>this is an urgent requirmenet for FoG</p>
task #7211 (New): Strategy for DwC-A Export of referenceshttps://dev.e-taxonomy.eu/redmine/issues/72112018-01-23T10:15:55ZAndreas Müller
<p>References are an extension which links to core (taxa).<br>
However, references may link to multiple taxa (or even other data). We need to decide if we want a record per such relationship or if each reference should occur only once. Currently each reference is exported only once so the relationship to other taxa gets lost. At the same time in core we do have some reference information already so the reference extension is maybe not needed at all. The reference extension does, like all extensions, not have an own identifier (except for the identifier field(s) meant for ISBN, DOI, etc. But the later could be used for CDM uuid also. </p>
<p>Maybe this should all be configurable. But we should also check how IPT is doing it by default.</p>
<p>Note: There are 2 reference extensions, the standard one and the EOL one. Currently only the first is implemented.</p>
bug #7175 (Closed): DwC-A export optionally filters by published flaghttps://dev.e-taxonomy.eu/redmine/issues/71752018-01-15T07:23:08ZAndreas Kohlbecker
<p>ws werden im Moment alle Taxa exportiert, egal ob das publish flag gesetzt ist oder nicht.</p>
<p>Ich denke, wir sollten das konfigurierbar machen.</p>
bug #7168 (New): dwcaTaxExport request with clearCache=true does not return an archivehttps://dev.e-taxonomy.eu/redmine/issues/71682018-01-11T15:14:07ZAndreas Kohlbecker
<p>the below request starts producing an archive but once the process is complete the next call at this URI seems to delete the archive instead of delivering it. The cache should only be cleared after the clean up timeout of the progress monitor has been reached. To me it seems as if there no point having this <code>clearCache</code> parameter. </p>
<p><a href="http://api.cybertaxonomy.org:80/phycobank/dwca/dwcaTaxExport?clearCache=true&doMisapplieds=true&doSynonyms=true&doImages=false&doDescriptions=false&doDistributions=false&doVernaculars=true&doTypesAndSpecimen=true&doResourceRelations=false&doReferences=true&withHigherClassification=false&includeHeader=true">http://api.cybertaxonomy.org:80/phycobank/dwca/dwcaTaxExport?clearCache=true&doMisapplieds=true&doSynonyms=true&doImages=false&doDescriptions=false&doDistributions=false&doVernaculars=true&doTypesAndSpecimen=true&doResourceRelations=false&doReferences=true&withHigherClassification=false&includeHeader=true</a></p>
bug #7167 (New): dwca-export-controller documentation issueshttps://dev.e-taxonomy.eu/redmine/issues/71672018-01-11T15:00:21ZAndreas Kohlbecker
<ul>
<li>the contoller method exportGetExplanation() which is mapped to <code>/dwca</code> returns an html page which will in future contain the documentation of the webservice. The documentation however is in general produced through swagger. Therefore this method seems to be a concurrent approach to produce webservice documentation. I advocate for removing this method and to add proper swagger annotations where needed.</li>
<li>swagger annotations are at least need for all request parameters of the type <code>UuidList</code>. All these appear as <code>List<String></code> in swagger, so the user does not know what to pass to the web service. </li>
<li>Passing an invalid uuid as <code>classification</code> causes a <em>Error 400 Bad Request</em> with no further information on the cause, better error reporting is neede here</li>
</ul>
bug #6988 (New): dwca export webservice missing in swagger documentationhttps://dev.e-taxonomy.eu/redmine/issues/69882017-09-26T13:42:43ZAndreas Kohlbecker
<p>the <code>/dwca</code> endpoint is missing in the swagger documentation.</p>
<p>Add this endpoint to the swagger group "Data export" if possible. Otherwise either change the pas path to <code>export/dwca</code> and put the csv services under the same prefix or create two distinct swagger groups which would be lees nice.</p>
bug #6984 (Closed): withHeader is not yet working in DwC-A exporthttps://dev.e-taxonomy.eu/redmine/issues/69842017-09-26T07:54:57ZAndreas Müllerfeature request #6933 (Closed): Add possibility to export only families or other part of the tree...https://dev.e-taxonomy.eu/redmine/issues/69332017-09-08T08:25:37ZKatja Luthertask #2342 (New): Open issues for DwC-A exporthttps://dev.e-taxonomy.eu/redmine/issues/23422011-04-21T10:07:07ZAndreas Müller
<p>wiki:DarwinCoreArchive</p>
<p>Open issues:</p>
<ul>
<li><p>check that all best practices from <a href="http://code.google.com/p/gbif-ecat/wiki/BestPractices">http://code.google.com/p/gbif-ecat/wiki/BestPractices</a> are included</p></li>
<li><p>investigate why relatedResources do not get into metaData.xml for cichorieae export</p></li>
<li><p>include used vocabularies in metadata.xml </p></li>
<li><p>fix eml.xml (it currently doesn't validate)</p></li>
<li><p>allow more configuration/filtering -> partly handled in <a class="issue tracker-6 status-5 priority-10 priority-lowest closed" title="task: Adapt DwcA Export to CDM light export strategy (Closed)" href="https://dev.e-taxonomy.eu/redmine/issues/6754">#6754</a></p></li>
<li><p>Check all parameters again</p></li>
<li><p>document problems and configuration</p></li>
<li><p>document/implement missing parameters</p></li>
<li><p>allow higher classification handling -> first implementation: d2f7f487</p></li>
<li><p>remove always empty fields</p></li>
<li><p>~<del>refine progress monitoring</del>~ -> <a class="issue tracker-4 status-5 priority-11 priority-default closed" title="bug: Implement progress monitor for DwC A export (Closed)" href="https://dev.e-taxonomy.eu/redmine/issues/6799">#6799</a></p></li>
<li><p>implement logging that can be used by an Editor user -> first version <a class="issue tracker-6 status-5 priority-10 priority-lowest closed" title="task: Adapt DwcA Export to CDM light export strategy (Closed)" href="https://dev.e-taxonomy.eu/redmine/issues/6754">#6754</a></p></li>
<li><p>~<del>large exports (split in parts)</del>~ -> <a class="issue tracker-6 status-5 priority-10 priority-lowest closed" title="task: Adapt DwcA Export to CDM light export strategy (Closed)" href="https://dev.e-taxonomy.eu/redmine/issues/6754">#6754</a></p></li>
<li><p>refactor such that metadata is created in the beginning</p></li>
<li><p>during export of cichoriea sometimes a "data too complex for specimen facade" error occurred (strange as we edit and import all data via the facade)</p></li>
<li><p>originalNameUsageId should link to the according concept (if it exists)</p></li>
<li><p>data needs to be consistent: if exporting while data are edited the set of core data needs to be fixed at the beginning </p></li>
<li><p>implement default fields such as the source field in core </p></li>
<li><p>correct handling of references (<a class="issue tracker-6 status-1 priority-11 priority-default" title="task: Strategy for DwC-A Export of references (New)" href="https://dev.e-taxonomy.eu/redmine/issues/7211">#7211</a>)</p></li>
</ul>
<pre><field default="http://wp6-cichorieae.e-taxonomy.eu/portal/?q=cdm_dataportal/taxon/{ID}" term="http://purl.org/dc/terms/source"/>
</pre>
<ul>
<li>test if apache commons compress could be useful (<a href="http://commons.apache.org/compress/download_compress.cgi">http://commons.apache.org/compress/download_compress.cgi</a>)</li>
</ul>
<p>see also #2455 and #2457</p>