Project

General

Profile

Activity

From 12/24/2023 to 01/22/2024

01/22/2024

05:58 PM bug #10111: Data loss e.g. when entering type information
Orphaned Specimen:
~~~ sql
SELECT sob.DTYPE, sob.id, sob.titleCache, sob.accessionnumber, sob.protectedtitlecache...
Andreas Müller
04:27 PM bug #10111: Data loss e.g. when entering type information
wGB:
Caryophyllales Datenbank, Alternanthera scirpoides Hook.f., Gen. Pl. 3: 39. 1880
Es gab einen textuellen Typus...
Andreas Müller
04:06 PM Revision 9abcf357 (taxeditor): ref #10440: improve meta data preference page
Katja
02:28 PM Revision 85c2e280 (taxeditor): ref #10440: read pref from json
Katja
02:24 PM Revision c382700b (cdmlib): ref #10441: some more property path adaptions
Katja Luther
02:22 PM feature request #10127 (Resolved): Add full reference information to sec. references in dataportal
Andreas Müller wrote in #note-23:
>
> There is still a space that shouldn't be there before the commata:
>
> ...
Katja Luther
02:13 PM Revision 1d0387e8 (cdmlib): ref #10440: differ between only cdm/server and perfer cdm/server
Katja Luther
02:11 PM Revision 77a91b9d (cdm-dataportal): ref #10440: differ between only cdm/server and prefer cdm/server
Katja Luther

01/21/2024

01:35 PM Revision a60344a7 (taxeditor): fix non-compiling SearchManager (cont.)
Andreas Müller
01:35 PM Revision b3967f74 (taxeditor): cleanup
Andreas Müller
01:17 PM Revision aa0e988e (taxeditor): fix non-compiling SearchManager
Andreas Müller
12:54 AM Revision eb4dc829 (cdmlib): ref #10400 fix FindOccurrencesConfigurator default filter value
Andreas Müller

01/20/2024

11:42 PM Revision 50c380b7 (cdmlib): ref #10400 use TaxonOccurrenceRelationType param in webservices
Andreas Müller
11:41 PM Revision 35296db5 (cdmlib): cleanup
Andreas Müller
07:04 PM bug #7045: portal/classification/{uuid}/childNodesOf/{uuid} service slow
TaxonNodeDto params:
easy to load:
* secUuid
* taxonUuid
* (taxon node) status
* taxonStatus = TaxonStatus.Accepted...
Andreas Müller
06:43 PM feature request #10400 (Resolved): Make taxon-specimen relation for taxon pages configurable in webservice
This is implemented by a major refactoring. Many method finally call OccurrenceDaoHibernateImpl.listByAssociatedTaxon... Andreas Müller
06:30 PM feature request #10459 (Closed): Add taxon-specimen association filter for taxon pages
The webservices have been adapted in #10400. The filter parameter still needs to be implemented in dataportal.
Dis...
Andreas Müller
03:52 PM Revision 5f4dcf70 (cdmlib): ref #10400 minor javadoc
Andreas Müller
03:52 PM Revision db2c6c41 (taxeditor): ref #10400 fix test and adapt to moved TaxonOccurrenceRelationType
Andreas Müller
03:38 PM Revision e8c4d01c (cdmlib): ref #10400 move TaxonOccurrenceRelationType to api
Andreas Müller
03:20 PM Revision 2dc5ac81 (cdmlib): ref #10400 refactor occurrenceDao for findByAssociatedTaxon and add association type configuration param (cont.)
Andreas Müller
11:57 AM Revision 22328801 (cdmlib): ref #10400 fix TypedQuery issue in TaxonNameDaoHibernateImpl.getTypeDesignationQuery()
Andreas Müller
01:36 AM Revision 241583f9 (cdmlib): ref #10400 refactor occurrenceDao for findByAssociatedTaxon and add association type configuration param
Andreas Müller

01/19/2024

07:42 PM feature request #7413 (Closed): Make in-Authors editable in TaxEditor for zoological and fungi names
works as expected now Andreas Müller
11:58 AM feature request #7413 (Resolved): Make in-Authors editable in TaxEditor for zoological and fungi names
Andreas Müller wrote in #note-28:
> Andreas Müller wrote in #note-22:
> > The basionym in-author is still not saved...
Katja Luther
04:02 PM feature request #10448 (Feedback): Implement WFO Backbone export in TaxEditor
The export is not yet available in the menu:
![](clipboard-202401191602-v0ffd.png)
Andreas Müller
03:52 PM bug #10457: Print version of portal site sometimes shows links as text
oder https://addons.mozilla.org/de/firefox/addon/fireshot/ Andreas Müller
03:51 PM bug #10457: Print version of portal site sometimes shows links as text
WGB:
dies gilt das auch für Opera, im Gegensatz zu dem, was ich vorher sagte (eFloraMex). Bei Opera gibt’s aber ei...
Andreas Müller
03:26 PM bug #10457: Print version of portal site sometimes shows links as text
KL:
Das scheint drupal Funktionalität zu sein, es wird mit folgendem Code zugefügt:
~~~ php
drupal_add_js('jQu...
Andreas Müller
01:12 PM bug #10457 (New): Print version of portal site sometimes shows links as text
observed in Firefox:
WGB:
Außerdem zeigte er einen Browser-Ausdruck für ein einzelnes Taxon, gemacht mit Firefo...
Andreas Müller
03:20 PM feature request #8930: Publishable objects should show icon if they are unpublished
Maybe this is a no-brainer and it fits to the current milestone (#10334) Andreas Müller
03:16 PM feature request #8138 (Closed): [DISCUSS] Publish flag for facts and type designations
The type designation discussion has been moved to #10458.
Factual data filter is implemented in #10206.
Andreas Müller
03:13 PM discussion #10458 (New): [DISCUSS] Publish flag for type designations
In #7653#note-5 there was the wish for an individual publish flag on type desginations (especially for text based typ... Andreas Müller
03:05 PM feature request #10334: Evaluate DescriptionBase.publish in webservices
I also added a filter for unpublished facts to CDMlight and ColDP export.
@Katja, could you please add the accord...
Andreas Müller
03:04 PM feature request #10334: Evaluate DescriptionBase.publish in webservices
The specimens also work now.
I also cleanup the services and dao code a lot, removed multiple methods and tried t...
Andreas Müller
03:00 PM Revision 2d2af82f (cdmlib): cleanup
Andreas Müller
03:00 PM Revision 6b19f270 (cdmlib): ref #10206 add publish flag to CdmLight and ColDP export in cdmlib
Andreas Müller
02:29 PM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal
Andreas Müller wrote in #note-23:
> For some reason the maps are not shown if one removes any of the terms in use fr...
Andreas Müller
02:03 PM feature request #10330 (Feedback): Handle term tree distribution status for distributionInfo in dataportal
For some reason the maps are not shown if one removes any of the terms in use from the "Distribution status filter tr... Andreas Müller
01:40 PM feature request #10330 (Closed): Handle term tree distribution status for distributionInfo in dataportal
Works as expected, now. Andreas Müller
01:39 PM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal
Katja Luther wrote in #note-10:
> Andreas Müller wrote in #note-8:
> > Please remove " (including hierarchical orde...
Andreas Müller
12:26 PM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal

>
> This is implemented also on server side, now. So could you please add the parameter statusTree to this webser...
Katja Luther
02:04 PM bug #10440: Still some problems with metadata of images in portal
The preference value is json now. Katja Luther
12:40 PM bug #10440: Still some problems with metadata of images in portal
Andreas Müller wrote in #note-22:
> Katja Luther wrote in #note-6:
> > If the source is set to mediaServer but no m...
Katja Luther
02:03 PM Revision 3bb13bd2 (cdmlib): ref #10440: save meta data preference as json
Katja Luther
01:38 PM Revision 780eb27d (cdm-dataportal): ref #10330 revert description on area tree
Andreas Müller
01:30 PM Revision d5ab13e6 (cdm-dataportal): ref #10330 adapt info text for status tree
Andreas Müller
01:16 PM Revision 6eb823bf (cdm-dataportal): remove outdated distributionmap method link
Andreas Müller
12:20 PM Revision 10bc2ade (cdm-dataportal): ref #10127: remove space between ref and comma
Katja Luther
11:24 AM Revision 63a43144 (cdm-dataportal): ref #10456: don't get elements for specimen table - continue
Katja Luther
11:05 AM bug #10456 (In Progress): Specimen Table view does not show all typedesignations
This is at least in progress. Please set to resolved if fully fixed already. Andreas Müller
09:41 AM bug #10456 (Closed): Specimen Table view does not show all typedesignations
The specimen table view does not show all typedesignations but only the typedesignations of the accepted taxon homoty... Katja Luther
10:10 AM Revision a12b1e26 (cdm-dataportal): ref #10456: do not get full elements for specimen table before getting dtos
Katja Luther
09:43 AM Revision 1127a953 (cdmlib): ref #10456: order of occurrences
Katja Luther

01/18/2024

11:05 PM Revision 3d94bd2a (taxeditor): ref #10334 fix test in TaxEditor (cont.)
Andreas Müller
10:49 PM Revision 91252243 (taxeditor): ref #10334 fix test in TaxEditor
Andreas Müller
10:19 PM Revision d41da5c3 (cdmlib): ref #10441: some more propertypath adaptions
Katja Luther
08:40 PM Revision 99d68d67 (cdmlib): fix portal test
Katja Luther
08:10 PM Revision c3c1b711 (cdmlib): ref #10334 further handle include unpublished in webservices (cont.)
Andreas Müller
08:06 PM Revision 9e3e31c0 (cdmlib): ref #10334 further handle include unpublished in webservices
Andreas Müller
08:01 PM Revision e59035bc (cdm-dataportal): fix test
Katja Luther
07:57 PM Revision d0501a22 (cdm-dataportal): fix test
Katja Luther
07:16 PM Revision 856cb64a (cdm-dataportal): fix c&p error
Katja Luther
07:07 PM Revision ff465593 (cdm-dataportal): fix tests
Katja Luther
07:06 PM Revision 06b7dc0c (cdm-dataportal): fix tests
Katja Luther
07:01 PM Revision c19e0bd5 (cdm-dataportal): doi needs to be not null
Katja Luther
06:56 PM Revision 6224aba9 (cdm-vaadin): code formatting
Andreas Müller
06:53 PM Revision c1c60866 (cdm-vaadin): remove unused method
Andreas Müller
06:43 PM Revision aec35a28 (taxeditor): ref #10334 adapt TaxEditor map parameters to includeUnpublished param
Andreas Müller
06:41 PM Revision 3616bf76 (cdm-dataportal): fix not existing variable
Katja Luther
06:38 PM Revision 2c027a97 (cdmlib): cleanup OccurrenceService
Andreas Müller
06:38 PM Revision b22461df (cdmlib): ref #10334 add getDistributionServiceRequestParameterString(taxonDescriptions, ...)
Andreas Müller
05:41 PM Revision 39897a26 (cdmlib): ref #10334 remove further unused methods
Andreas Müller
04:54 PM feature request #10240 (Closed): Improve DOI formatting for references
I think we can close this for now. If there will be detail refinement requests they can be discussed and implemented ... Andreas Müller
11:13 AM feature request #10240: Improve DOI formatting for references
Now the doi is added with external link and if no separator is at the end of the reference a point is added. If an in... Katja Luther
04:45 PM feature request #10127: Add full reference information to sec. references in dataportal
Katja Luther wrote in #note-18:
> Andreas Müller wrote in #note-14:
> > All footnotes end with a colon now:
> >
...
Andreas Müller
03:29 PM Revision e459c67b (cdmlib): add typedesignations of synonyms to list of specimen dtos
Katja Luther
03:01 PM Revision fe4b8fce (cdmlib): ref #10334 further cleanup
Andreas Müller
03:00 PM Revision dd2e93c1 (cdmlib): ref #10334 fix test
Andreas Müller
02:50 PM Revision 0bc826d6 (cdmlib): ref #10334 remove unused description related methods and add some more includePublished handling
Andreas Müller
02:45 PM Revision 616fe9f6 (cdm-dataportal): fix derivation table, to show specimen of associated taxa as well
Katja Luther
11:42 AM Revision 2b139d09 (taxeditor): ref #7413: handle BasionymInAuthor correctly -continue
Katja Luther
11:37 AM Revision 96b38605 (taxeditor): ref #7413: handle BasionymInAuthor correctly
Katja Luther
11:30 AM feature request #10448 (Resolved): Implement WFO Backbone export in TaxEditor
The export is available in the TaxEditor now. It is the same as for the DwC-A Export. Please review. Katja Luther
11:26 AM Revision 9d63798f (taxeditor): ref #10448: add WFO DwC-A export to Editor
Katja Luther
11:10 AM Revision 45a847e0 (cdm-dataportal): ref #10240: some formating issues
Katja Luther
01:02 AM Revision 4adece10 (cdmlib): cleanup
Andreas Müller
01:02 AM Revision 67586f49 (cdmlib): ref #10334 evaluate descriptionBase.publish in webservices (cont. II)
Andreas Müller
12:28 AM feature request #10334 (Feedback): Evaluate DescriptionBase.publish in webservices
It does not yet work for specimen in the specimen table view and also not for the specimen tree view. Andreas Müller
12:23 AM feature request #10334 (Resolved): Evaluate DescriptionBase.publish in webservices
Generally this works now for the old taxon pages, too. Before closing I still need to check if all service calls hand... Andreas Müller

01/17/2024

11:18 PM Revision 4e335a9e (cdm-vaadin): ref #10334 adapt vaadin to DescriptionBase.publish
Andreas Müller
11:17 PM Revision 922a2cec (cdm-vaadin): cleanup
Andreas Müller
10:55 PM Revision 2bbdf8fb (cdmlib): ref #10334 evaluate descriptionBase.publish in webservices (cont.)
Andreas Müller
10:39 PM Revision 11fd5383 (cdmlib): cleanup
Andreas Müller
10:36 PM Revision 590b1a23 (cdmlib): ref #10334 evaluate descriptionBase.publish in webservices
Andreas Müller
08:37 PM Revision a55ba33e (cdmlib-apps): adapt general DwcaExportActivator
Andreas Müller
08:35 PM Revision cbbe6b62 (cdmlib-apps): Add CichorieaeDwcaExportActivator ref #2455
Andreas Müller
08:30 PM Revision 9182e448 (cdmlib-apps): minor
Andreas Müller
08:27 PM Revision 940c5404 (cdmlib-apps): update pom to 5.42
Andreas Müller
08:23 PM feature request #7443 (Resolved): Implement in-authors in name parser and formatter for zoological and fungi names
Should be fixed. Please review.
Maybe formatting still needs to be checked as this time I only worked on parsing.
Andreas Müller
08:20 PM Revision 9bb911e1 (cdmlib): ref #7443 add parser for fungi and zoological names with in-authors
Andreas Müller
05:53 PM Revision 400416b3 (cdmlib): cleanup
Andreas Müller
03:00 PM feature request #7413: Make in-Authors editable in TaxEditor for zoological and fungi names
Andreas Müller wrote in #note-22:
> The basionym in-author is still not saved or handled (you did not find the metho...
Andreas Müller
03:00 PM feature request #7413: Make in-Authors editable in TaxEditor for zoological and fungi names
Andreas Müller wrote in #note-26:
> Katja Luther wrote in #note-25:
> > Andreas Müller wrote in #note-23:
> > > Ho...
Andreas Müller
01:21 PM feature request #7413: Make in-Authors editable in TaxEditor for zoological and fungi names
Katja Luther wrote in #note-25:
> Andreas Müller wrote in #note-23:
> > How far is the preference used at all. To m...
Andreas Müller
01:07 PM feature request #7413: Make in-Authors editable in TaxEditor for zoological and fungi names
Andreas Müller wrote in #note-23:
> How far is the preference used at all. To me it seems that it has no effect. If ...
Katja Luther
01:02 PM feature request #7413: Make in-Authors editable in TaxEditor for zoological and fungi names
Andreas Müller wrote in #note-22:
> The basionym in-author is still not saved or handled (you did not find the metho...
Katja Luther
12:36 PM feature request #7413: Make in-Authors editable in TaxEditor for zoological and fungi names
How far is the preference used at all. To me it seems that it has no effect. If so we should remove it. Andreas Müller
12:33 PM feature request #7413 (Feedback): Make in-Authors editable in TaxEditor for zoological and fungi names
The basionym in-author is still not saved or handled (you did not find the method but it exists). Andreas Müller
11:59 AM feature request #7413 (Resolved): Make in-Authors editable in TaxEditor for zoological and fungi names
This should be fixed with the last commits. Please review. Katja Luther
02:11 PM Revision f91075bf (cdm-dataportal): ref #10330: add status tree to distribution call in non-dto page
Katja Luther
01:48 PM Revision d117faa0 (cdm-dataportal): ref #10330: : remove order from description
Katja Luther
01:44 PM feature request #10127: Add full reference information to sec. references in dataportal
Now it looks correct for Abies alba:
![](Screenshot 2024-01-17 134411.png)
Katja Luther
12:04 PM feature request #10127: Add full reference information to sec. references in dataportal
I adapted the render template configuration of the test portal to the render template of the production portal and no... Katja Luther
01:42 PM bug #10455 (New): Improve DOI formatting for references in cdm-light
for details see #10240
It needs to bediscussed if the DOI should go into the bibliographic reference formatter and...
Katja Luther
01:41 PM feature request #10240 (Resolved): Improve DOI formatting for references
Andreas Müller wrote in #note-10:
> The given example is a bit misleading as it is not a typical reference with auth...
Katja Luther
01:37 PM Revision 364c68af (cdm-dataportal): ref #10127: : add . if no separator at the end
Katja Luther
01:20 PM Revision 10cf7ce4 (cdmlib): ref #7413 fully move in-authors to INonViralName
Andreas Müller
01:03 PM Revision d554c0f8 (cdmlib): ref #7413: move in-author methods to INonViralName
Katja Luther
12:46 PM feature request #9406 (Rejected): Open issue for Edaphobase rank web service
Edaphobase is not developed further anymore. So we won't fix. Andreas Müller
12:44 PM task #6753 (Rejected): Edaphobase data issues before import
Edaphobase is not developed further anymore. So we won't fix. Andreas Müller
12:43 PM task #6510 (Rejected): Import Rank labels in German and Latin
Edaphobase is not developed further anymore. So we won't fix. Andreas Müller
12:42 PM feature request #6509: Implement Representation csv import
Originally this was a blocker for #6510 Andreas Müller
11:14 AM bug #10454 (In Progress): Original spelling should not be shown in taxon title
This is fixed on cdmlib site. Please implement in dataportal. Andreas Müller
10:38 AM bug #10454 (Closed): Original spelling should not be shown in taxon title
On new taxon pages the original spelling is shown also in the taxon title but should be shown only in the synonymy.
...
Andreas Müller
11:13 AM Revision 61df0ef1 (cdmlib): ref #10454, ref #7781 add separator for nameUsedInSource
Andreas Müller
11:10 AM Revision 048a1365 (cdmlib): ref #10453: catch/log the error if makeNewMediaRepresentationsFor fails
Katja Luther
10:42 AM bug #7781: original spelling is missing for accepted taxon in taxon page
This should be fixed automatically by using the new taxon pages. See #10454 and #10322. Andreas Müller
01:00 AM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal
After release we need to add the parameter to the E+M dataportal. Andreas Müller
12:40 AM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal
Katja Luther wrote in #note-10:
> Andreas Müller wrote in #note-8:
> > Please remove " (including hierarchical orde...
Andreas Müller
12:38 AM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal
Andreas Müller wrote in #note-9:
> Tree is passed to the webservice but the result still shows areas for all status:...
Andreas Müller
12:35 AM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal
Andreas Müller wrote in #note-14:
> Andreas Müller wrote in #note-13:
> > Katja Luther wrote in #note-11:
> > > An...
Andreas Müller
12:59 AM feature request #9500 (Resolved): Allow removing certain distribution status from distribution publication
This is so far fixed for the dataportals as it is possible to have a statusTree parameter now which allows defining t... Andreas Müller
12:54 AM Revision 2b07f648 (cdmlib): ref #9500 remove ignoreDistributionStatusUndefined from DistributionInfoConfiguration (cont.)
Andreas Müller
12:43 AM Revision e23c54b3 (cdmlib): ref #9500 remove ignoreDistributionStatusUndefined from DistributionInfoConfiguration
Andreas Müller

01/16/2024

11:27 PM Revision c37edef7 (cdmlib): ref #9500, ref #10330 fix status tree handling
Andreas Müller
11:27 PM Revision 954ee1f5 (cdmlib): cleanup
Andreas Müller
10:40 PM feature request #9500: Allow removing certain distribution status from distribution publication
once the statusTree parameter works remove the ignoreDistributionStatusUndefined from DistributionInfoConfiguration Andreas Müller
10:37 PM Revision 63721c50 (cdmlib): ref #9500, ref #10330 implement status tree handling in distribution info webservices
Andreas Müller
05:41 PM bug #10292: Filter Metadata from Cdm Instance and from MediaServer
This is maybe a duplicate for #10440 Andreas Müller
05:39 PM bug #10440: Still some problems with metadata of images in portal
How far is #10292 a duplicate for this ticket? If it is a full duplicate can you close it as duplicate? Andreas Müller
05:37 PM bug #10440: Still some problems with metadata of images in portal
Katja Luther wrote in #note-6:
> If the source is set to mediaServer but no meta data available from the media Serve...
Andreas Müller
05:30 PM bug #10440: Still some problems with metadata of images in portal
Can you offer a link to any website that uses the preferences for testing (best including a link to metadata services... Andreas Müller
05:28 PM bug #10440: Still some problems with metadata of images in portal
Currently the list is saved as a ;-separated list. Also the mapping is saved with "=>" as a separator with obligate(?... Andreas Müller
05:23 PM bug #10440: Still some problems with metadata of images in portal
In the database "allow override" is saved as true but there is no possibility to set this value. As long as the metad... Andreas Müller
05:19 PM bug #10440: Still some problems with metadata of images in portal
The Restore Defaults does not seem to work.
By the way what are the defaults.
Andreas Müller
05:18 PM bug #10440: Still some problems with metadata of images in portal
The infotext suggests that the preferences are only valid for the dataportal (and only for the universal viewer). If ... Andreas Müller
04:57 PM bug #10440: Still some problems with metadata of images in portal
The preference seems to be unsorted. This makes it difficult to find single keys. Andreas Müller
04:52 PM bug #10440: Still some problems with metadata of images in portal
The remove button does not work. Or better, it works but the table view is not updated. Andreas Müller
04:51 PM bug #10440: Still some problems with metadata of images in portal
The "New" and the "Remove" button should be beside each other and have the same (default) size for buttons. Current i... Andreas Müller
04:47 PM bug #10440: Still some problems with metadata of images in portal
The "Create metadata entry" best should have the possibility to enter all 3 data, "show", "Original labal" and "Displ... Andreas Müller
04:44 PM bug #10440 (Feedback): Still some problems with metadata of images in portal
Andreas Müller
04:43 PM bug #10440 (Resolved): Still some problems with metadata of images in portal
Adding a new row moves the buttons out of the visible area:
![](clipboard-202401161643-sjd88.png)
I guess the t...
Andreas Müller
04:34 PM bug #10440 (Feedback): Still some problems with metadata of images in portal
Andreas Müller
04:34 PM bug #10440: Still some problems with metadata of images in portal
Where exactly can I find the new dataportal preference? I couldn't find it. Andreas Müller
05:04 PM Revision d6610785 (taxeditor): ref #10440 update media metadata preferences info text
Andreas Müller
04:32 PM Revision a851ae99 (taxeditor): ref #7413: add selection listener
Katja Luther
04:24 PM Revision 2996ffb8 (cdm-dataportal): update documentation links
Andreas Müller
03:52 PM bug #10363: Find a solution for importing all shared preferences in a new eclipse installation
Katja Luther wrote in #note-7:
> I tried it another time and I got an error again:
>
> ![](Screenshot 2023-11-16 ...
Andreas Müller
03:50 PM Revision e36a472a (taxeditor): ref #7413: fix if no nameDetails conf exists - continue
Katja Luther
03:45 PM bug #8591: Multiple representations problem on setting synonym as basionym
I move this to the current milestone as at least a part was solved within current milestone according to last comment. Andreas Müller
03:01 PM Revision d9d713f7 (taxeditor): ref #7413: fix if no nameDetails conf exists
Katja Luther
02:49 PM bug #10453: Missing uri in mediaRepresentation yields to completely missing media
~~~
java.lang.NullPointerException
at eu.etaxonomy.cdm.api.service.media.MediaUriTransformationProcessor.buildPathQ...
Katja Luther
02:26 PM bug #10453: Missing uri in mediaRepresentation yields to completely missing media
So if you can create the stacktrace by debugging can you add it to the ticket? Andreas Müller
01:48 PM bug #10453: Missing uri in mediaRepresentation yields to completely missing media
Andreas Müller wrote in #note-1:
> Is there a stacktrace or how can this be observed?
With debugging, currently t...
Katja Luther
01:39 PM bug #10453: Missing uri in mediaRepresentation yields to completely missing media
Is there a stacktrace or how can this be observed? Andreas Müller
11:56 AM bug #10453 (Closed): Missing uri in mediaRepresentation yields to completely missing media
If accidentally an empty media is added to a description, the complete loading of media crashes.
This empty media sh...
Katja Luther
02:18 PM Revision e89509b5 (taxeditor): ref #7413: inAuthors only for fungus or zoological names - continue
Katja Luther
01:47 PM feature request #7413: Make in-Authors editable in TaxEditor for zoological and fungi names
Katja Luther wrote in #note-17:
> If the preference is set then you have to reload the details view. The saving shou...
Andreas Müller
01:30 PM feature request #7413: Make in-Authors editable in TaxEditor for zoological and fungi names
Katja Luther wrote in #note-17:
> If the preference is set then you have to reload the details view. The saving shou...
Andreas Müller
12:53 PM feature request #7413: Make in-Authors editable in TaxEditor for zoological and fungi names
If the preference is set then you have to reload the details view. The saving should be fixed for InCombinationAuthor... Katja Luther
11:02 AM feature request #7413: Make in-Authors editable in TaxEditor for zoological and fungi names
in-authors are shown independent of the preference and of the nom. code now. For now it should be shown only if nom. ... Andreas Müller
10:55 AM feature request #7413 (Feedback): Make in-Authors editable in TaxEditor for zoological and fungi names
in-Authors can be edited now, but are not saved to the DB. Andreas Müller
01:37 PM feature request #10127: Add full reference information to sec. references in dataportal
Can you check yourself what is not correct there? Maybe it is because sec. is handled as "Source" on top of the page? Andreas Müller
12:30 PM feature request #10127: Add full reference information to sec. references in dataportal
Andreas Müller wrote in #note-17:
> Andreas Müller wrote in #note-16:
> > We need to discuss the default values. I th...
Katja Luther
12:19 PM feature request #10127: Add full reference information to sec. references in dataportal
Andreas Müller wrote in #note-14:
> All footnotes end with a colon now:
>
> ![](clipboard-202401161135-codoi.png)...
Katja Luther
12:07 PM feature request #10127: Add full reference information to sec. references in dataportal
Andreas Müller wrote in #note-16:
> We need to discuss the default values. I think, if the sec. ref. is generally sh...
Andreas Müller
11:39 AM feature request #10127: Add full reference information to sec. references in dataportal
We need to discuss the default values. I think, if the sec. ref. is generally shown (switched on in preferences) the ... Andreas Müller
11:36 AM feature request #10127: Add full reference information to sec. references in dataportal
Example for internal link: https://test.e-taxonomy.eu/dataportal/preview/cichorieae/?q=cdm_dataportal/taxon/c4651898-... Andreas Müller
11:35 AM feature request #10127: Add full reference information to sec. references in dataportal
All footnotes end with a colon now:
![](clipboard-202401161135-codoi.png)
Can you remove this?
Andreas Müller
11:31 AM feature request #10127: Add full reference information to sec. references in dataportal
Currently the reference is shown below each homotypic group. This makes it very restless:
![](clipboard-20240116113...
Andreas Müller
11:26 AM feature request #10127 (Feedback): Add full reference information to sec. references in dataportal
Please shorten the config title
* "Complete secundum referenence in footnote or as internal link." -> "Secundum re...
Andreas Müller
11:06 AM feature request #10127: Add full reference information to sec. references in dataportal
Please always provide a direct link. This makes it easier to review. Andreas Müller
01:28 PM Revision 417a0aee (cdmlib): ref #7443, ref #10432 add formatting and partly parsing for name in-authors
Andreas Müller
01:02 PM Revision 820a6f59 (taxeditor): ref #7413: inAuthors should be shown only for fungus or zoological names
Katja Luther
12:19 PM Revision 989b3299 (cdm-dataportal): ref #10127: : should be shown, only if microreference available
Katja Luther
12:15 PM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal
Andreas Müller wrote in #note-13:
> Katja Luther wrote in #note-11:
> > Andreas Müller wrote in #note-9:
> >> ...
...
Andreas Müller
12:12 PM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal
Katja Luther wrote in #note-11:
> Andreas Müller wrote in #note-9:
>> ...
> This is a problem of the webservice, i...
Andreas Müller
12:11 PM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal
The status tree parameter does not seem to be available for old taxon pages:
![](clipboard-202401161210-xk7x0.png)...
Andreas Müller
12:02 PM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal
Andreas Müller wrote in #note-9:
> Tree is passed to the webservice but the result still shows areas for all status:...
Katja Luther
12:02 PM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal
Andreas Müller wrote in #note-8:
> Please remove " (including hierarchical order)" from the documentation. I don't t...
Katja Luther
12:00 PM feature request #10330: Handle term tree distribution status for distributionInfo in dataportal
Tree is passed to the webservice but the result still shows areas for all status:
![](clipboard-202401161159-5ox1j.p...
Andreas Müller
11:50 AM feature request #10330 (Feedback): Handle term tree distribution status for distributionInfo in dataportal
Please remove " (including hierarchical order)" from the documentation. I don't think that status hierarchy is consid... Andreas Müller
12:00 PM Revision 491a217c (cdm-dataportal): ref #10330: adapt description
Katja Luther
10:48 AM bug #10427 (Closed): Exception in NodeSelection Dialog when no classification is selected
Works as expected, now. Andreas Müller
10:37 AM bug #10428 (Closed): Distribution Selection in Distribution Editor throws NPE
Works as expected now. Andreas Müller
10:34 AM bug #10428: Distribution Selection in Distribution Editor throws NPE
Also it is important to say, that this needs to be done while the TaxEditor is closed, otherwise the pref is saved ag... Andreas Müller
10:30 AM bug #10428: Distribution Selection in Distribution Editor throws NPE
Katja Luther wrote in #note-1:
> PLease review. You have to delete the line with "distribution.area.terms_cybertaxon...
Andreas Müller

01/15/2024

10:59 PM feature request #10424 (Closed): Add menu for new single fact to avoid creating dataset explicitly
Works as expected. Andreas Müller
10:51 PM feature request #10240: Improve DOI formatting for references
Also we need a separate ticket for the implementation in cdm-light / print publications (#10455) Andreas Müller
10:50 PM feature request #10240 (Feedback): Improve DOI formatting for references
The given example is a bit misleading as it is not a typical reference with author, year, title, maybe in-reference, ... Andreas Müller
10:37 PM bug #10442 (Closed): Create more meaningful tooltip in factual data menu
works as expected and code looks ok Andreas Müller
10:36 PM Revision deab5a1f (taxeditor): cleanup
Andreas Müller
02:26 PM feature request #10452 (New): Editorial workflow support
WGB:
Hier geht es im Sinne der CDM-Modellierungsphilosophie darum, möglichst generelle Funktionalitäten zu schaffe...
Andreas Müller
11:11 AM Revision 489349e1 (taxeditor): Catch Widget is disposed exception
Katja Luther

01/12/2024

05:48 PM Revision 39898f17 (cdmlib): ref #10447 rename HomotypicalGroupComparator-> HomotypicGroupComparator (cont.)
Andreas Müller
05:45 PM feature request #10451: Allow adding fullName (name+author) to coldp name table
The problem is that column generation is currently config/state independent. Andreas Müller
05:44 PM feature request #10451 (Resolved): Allow adding fullName (name+author) to coldp name table
that eases further working with coldb export data. Andreas Müller
05:27 PM task #10450 (New): Handle zip-files consistent in list exports
The handling of zip-files differs in the list exports (cdm-light, coldp, wfo-classification and dwc-a export).
For...
Andreas Müller
05:12 PM feature request #10449 (Resolved): Allow filtering out synonyms in list exports
DwC-A was already implemented. I implemented for the other list exports.
Can you please review and check if it is al...
Andreas Müller
05:09 PM feature request #10449 (Closed): Allow filtering out synonyms in list exports
Currently this should be implemented for cdm-light, coldp, wfo-classification and dwc-a export Andreas Müller
05:10 PM Revision f81bec15 (cdmlib): ref #10449 allow filtering out synonyms in list imports
Andreas Müller
05:10 PM Revision b7e198dc (cdmlib): ref #10447 rename HomotypicalGroupComparator-> HomotypicGroupComparator
Andreas Müller
12:44 PM Revision 0ae55712 (cdm-dataportal): ref #10240: set new default for iconified attribute
Katja Luther
11:55 AM feature request #10240 (Resolved): Improve DOI formatting for references
There is a first unconfigurable implementation available. Please have a look. For a configurable version I would crea... Katja Luther
11:51 AM Revision 0b9e66b3 (cdm-dataportal): ref #10240: first unconfigurable implementation for doi - continue
Katja Luther
11:37 AM Revision 3e59816a (cdm-dataportal): ref #10240: first unconfigurable implementation for doi -continue
Katja Luther
10:59 AM Revision 231b6ec8 (cdm-dataportal): ref #10240: first unconfigurable implementation for doi
Katja Luther
10:26 AM Revision e4cdef4a (cdmlib): ref #10410: change pref pred description
Katja Luther
10:25 AM Revision ea7cc060 (taxeditor): ref #10410: create new default description of not exist
Katja Luther

01/11/2024

05:03 PM task #10321: WFO name matching for Cichorioideae
Sec references in use:
~~~
SELECT sec.id , sec.titleCache, tn.classification_id, COUNT(*) AS n, acc.titleCache
F...
Andreas Müller
05:02 PM task #10321: WFO name matching for Cichorioideae
Taxa/synonyms without a combination author:
~~~
SELECT tn.id nameID, tn.titleCache, tn.fullTitleCache, tn.uuid, ...
Andreas Müller
04:59 PM feature request #5973: Implement DescriptionBase.isDefault in TaxEditor
For updating the data in the active databases I used:
~~~ sql
UPDATE DescriptionBase db
SET db.isDefault = 1
WH...
Andreas Müller
03:15 PM Revision 07975415 (cdmlib): ref #10441: adapt propertypath for names
Katja Luther

01/10/2024

02:33 PM Revision ae1b61dd (cdm-dataportal): ref #8144: fix some modifier issues
Katja Luther
02:10 PM Revision c4d6bb67 (taxeditor): fix c&p error
Katja
02:09 PM Revision 092948cc (taxeditor): ref #10436: modifiers only editable if rec. modifiers available
Katja
01:49 PM Revision b784f39f (taxeditor): ref #10440: improve metadata pref page - continue
Katja Luther
01:30 PM bug #10410: Newly created distributions are added to computed description
There were still problems when the taxon already has descriptions but none of them is the default description, then t... Katja Luther
01:21 PM Revision ea24b9be (taxeditor): ref #10440: smaller changes in metadata pref page
Katja Luther
01:21 PM Revision eb428680 (taxeditor): fix problems with distribution editor
Katja Luther
12:44 PM bug #10441 (In Progress): LIE in logfiles for DefinedTermBase.includes
Currently the only exception in the log files:
~~~
Caused by: org.hibernate.LazyInitializationException: failed to l...
Katja Luther
11:13 AM bug #10441 (Resolved): LIE in logfiles for DefinedTermBase.includes
The main issue is fixed. Open similar issue we may move to a new ticket if not easy to fix. Andreas Müller
11:34 AM feature request #10436 (In Progress): Make state modifiers invisible if no recommended term collection is selected
Katja Luther
11:06 AM task #10324 (Resolved): Export Caucasus data
are there open issues? Andreas Müller
11:05 AM feature request #10448 (Closed): Implement WFO Backbone export in TaxEditor
see #10446 for details Andreas Müller
11:00 AM feature request #10446 (In Progress): WFO Backbone export
Andreas Müller
09:30 AM bug #10447 (New): Rename homotypical to homotypic
... all over the code and in interfaces. As the class HomotypicalGroup is used at many places this is a major change.... Andreas Müller

01/09/2024

10:52 PM Revision b4efcca8 (cdmlib): handle children count in Cdm2CdmImport correctly
Andreas Müller
10:51 PM Revision f06f5764 (cdmlib): javadoc
Andreas Müller
10:50 PM Revision 81cfaeaa (cdmlib): ref #10271 avoid NPE for media without mediaCreated
Andreas Müller
10:47 PM Revision a9079a6e (cdmlib): ref #10271 add error handling and avoid NPE for unhandled name relationship types
Andreas Müller
11:32 AM bug #10440 (Resolved): Still some problems with metadata of images in portal
Katja Luther
11:20 AM Revision 248a7a5d (cdm-dataportal): ref #10440: smaller changes in media.inc and settings.php
Katja Luther
11:14 AM Revision e71d4892 (cdmlib): ref #10440: use mapping in readResourceMetadataFiltered
Katja Luther

01/08/2024

03:07 PM Revision 59e6d49d (cdmlib): ref #10440: code cleaning
Katja Luther
03:05 PM Revision 63e749ae (cdmlib): ref #10440: adapt manifest creation to portal pref of meta data source
Katja Luther
03:03 PM bug #10440: Still some problems with metadata of images in portal
Now it is implemented like this:
There is a preference page in editor to define the meta data which should be show...
Katja Luther
01:57 PM Revision 1cee4276 (taxeditor): remove doubled text
Katja Luther
01:09 PM Revision bee9a5ae (cdm-dataportal): ref #10292: smaller changes in media.inc
Katja Luther
12:59 PM Revision a9c03970 (taxeditor): ref #10292: providing preference page to define displayed meta data
Katja
12:24 PM Revision f345a26b (taxeditor): some more fixes in messages.properties
Katja
12:17 PM Revision 4db708b4 (taxeditor): smaller fixes in l10n
Katja Luther

01/07/2024

10:51 PM Revision 66a287cc (cdmlib): ref #10446 add isOrthographicVariant(), is Rejected() and isConserverd() to name interface
Andreas Müller

01/05/2024

12:27 PM Revision a3f45ee8 (cdmlib): minor
Andreas Müller
12:25 PM Revision c8492780 (cdmlib): improve logging in DwC-A export
Andreas Müller
12:24 PM Revision a2ff1a55 (cdmlib): avoid NPE in deleteName
Andreas Müller
12:24 PM Revision 5e4ea826 (cdmlib): ref #10446 first unchecked version of WFO DwC-A classification export
Andreas Müller

01/01/2024

03:46 PM Revision a55f034b (cdmlib-apps): ref #10432 Cleanup Cora import
Andreas Müller
03:45 PM Revision d24ce5cf (cdmlib-apps): ref #10324 Adapt CaucasusExportActivator to latest changes
Andreas Müller
03:39 PM Revision 9f2320ff (cdmlib-apps): ref #10446 add CichorieaeWfoClassificationExportActivator
Andreas Müller
03:38 PM feature request #10446 (Resolved): WFO Backbone export

https://about.worldfloraonline.org/images/uploads/documents/WFOGuidelinesForTaxonomicBackboneContributorsV._2.06.pd...
Andreas Müller
03:33 PM Revision 221d0bc6 (cdmlib-apps): ref #10321 add CichorieaeWfoIdentifierActivator
Andreas Müller
03:30 PM Revision 42746d2a (cdmlib-apps): remove corvidae destination
Andreas Müller
03:28 PM Revision 0c3788fb (cdmlib-apps): add taxon node filter to DwcaExportActivator
Andreas Müller
03:27 PM Revision ff5e4108 (cdmlib-apps): cleanup
Andreas Müller
01:58 PM Revision 444a189b (cdmlib): cleanup
Andreas Müller
01:58 PM Revision 50fc5f1d (cdmlib): remove warning for deprecation in Person.updateXXXCache
Andreas Müller
 

Also available in: Atom