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From 03/14/2023 to 04/12/2023

04/12/2023

10:56 PM Revision 7451bc51 (taxeditor): cleanup
Andreas Müller
07:58 PM Revision ba04dffc (cdmlib): ref #10284 add graph search on label
Andreas Müller
05:57 PM Revision 9af2c3b2 (taxeditor): ref #10284 adapt NamedAreaSelectionDialog and CommonNameNamedAreaSelectionDialog to term collection search
Andreas Müller
05:57 PM Revision 66fa42a1 (taxeditor): cleanup
Andreas Müller
05:56 PM Revision 69a04478 (cdmlib): temp ignore distribution service tests related to map service
Andreas Müller
05:40 PM Revision deaca585 (cdmlib): ref #10284 adjust service API to allow retrieving terms of a term collection
Andreas Müller
04:24 PM Revision d724ca92 (cdmlib): cleanup
Andreas Müller
03:24 PM Revision dc0daf78 (taxeditor): ref #10287: adapt connection test
Katja Luther
02:08 PM bug #10299: Verbatim year parsing and formatting for nomencl. references
AM:
in diesem Kontext ist uns aufgefallen, dass nomenklatorische Referenzen bislang ohne quotation mark formattiert ...
Andreas Müller
01:53 PM bug #10299 (In Progress): Verbatim year parsing and formatting for nomencl. references
The problem with this nomenclatural reference string is not the **ser** part but again the verbatim date part.
The ...
Andreas Müller
12:20 PM bug #10299 (Closed): Verbatim year parsing and formatting for nomencl. references
The correct reference formatting when adding the data in the data field is:
*Caucasoseris abietina (Boiss. & Balan...
Andreas Müller
01:39 PM task #10295: Parse verbatim year in reference
This should be fixed. Please review. Andreas Müller
12:14 PM task #10295 (Resolved): Parse verbatim year in reference
Andreas Müller
12:14 PM task #10295: Parse verbatim year in reference
AM:
grundsätzlich wird 2009 ["2008"] bereits schon geparsed.
Das Problem bei Nadjas Formatierung war, dass 2009 [...
Andreas Müller
01:27 PM task #8514 (Closed): remove all PhycoBank redmine instances
Andreas Müller wrote in #note-10:
> I guess this is fully implemented.
>
> Katja, can you have a final look if A...
Katja Luther
11:11 AM task #8514: remove all PhycoBank redmine instances
@Katja: did you have a look on this? Can we close?
If yes, please remove milestone.
Andreas Müller
01:07 PM Revision 2d2a661d (taxeditor): ref #10287: add move up and down in context menu
Andreas Müller
12:53 PM feature request #10284: Allow term trees as filters for named area dialogues
We should have a look if this can be included in current milestone as urgently needed for eFloraMex Andreas Müller
12:52 PM feature request #10291: Implement second publisher information for bibliographic reference formatting and other remaining issues
Journals werden nicht mit Publisher zitiert, ich kenne auch keine Ausnahmen.
"Print series": das ist schon mal ein...
Belen Escobari
12:23 PM feature request #10288 (Resolved): Implement publisher and placePublished2 in TaxEditor
Andreas Müller
12:13 PM Revision 6b67af3e (cdmlib): ref #10295 allow left quotation mark as right part of the quotation
Andreas Müller
11:38 AM bug #1924 (Closed): CIHORIEAE in-references in Footnotes
Andreas Müller
11:22 AM bug #10296 (Closed): Area Filter does not work in advanced search
The search UI works on the test server for E+M now and the fix makes sense. So I guess we can close. Andreas Müller
11:09 AM task #9975: Create new UML diagramms for the CDM
We will need further finetuning and also commit + installation so there is further work to do and we keep in 5.38 Andreas Müller
11:01 AM bug #10287 (Feedback): Remaining issues for Remote Server View
Everything works as expected. One more nice-to-have issue: allow "move up" and "move down" via d&d or context menu. Andreas Müller
10:01 AM bug #10287: Remaining issues for Remote Server View
Minor issues:
* Documentation of the class and the methods is often not correct. Also IMO we can fully documentation...
Andreas Müller
10:03 AM bug #10297 (New): Update php version on edit servers
On all servers more than one php version is installed, we should have a look whether they are still needed or could b... Katja Luther
09:59 AM Revision 59c95f1b (taxeditor): cleanup
Andreas Müller
09:59 AM Revision 8ba075b7 (taxeditor): ref #10287 change cdmlib label to lower case
Andreas Müller

04/11/2023

06:04 PM bug #2121 (Closed): Series part is not reflected in cache strategy
Andreas Müller
10:36 AM bug #10296 (Resolved): Area Filter does not work in advanced search
Katja Luther
10:36 AM bug #10296: Area Filter does not work in advanced search
This is fixed with checking for vocabulary dto in localize() Katja Luther
10:35 AM bug #10296 (Closed): Area Filter does not work in advanced search
mail ERS:
seit den letzten Updates/Maintenance gibt es keine Möglichkeit mehr, nach Arealen zu filtern.
„Type t...
Katja Luther
10:12 AM bug #10287 (Resolved): Remaining issues for Remote Server View
Please review. Katja Luther
10:11 AM bug #10287: Remaining issues for Remote Server View
For the check cdmlib version the basic version is implemented now. Katja Luther
10:08 AM Revision 0ded4de0 (taxeditor): ref #10287: add recommended to check cdmlib version
Katja Luther
10:00 AM Revision a32745ae (taxeditor): ref #10287: handling wrong port information
Katja Luther
09:41 AM feature request #10288: Implement publisher and placePublished2 in TaxEditor
Andreas Müller wrote in #note-6:
> To short the label I suggest to use "2nd ..."
This is implemented.
Katja Luther
09:40 AM feature request #10288: Implement publisher and placePublished2 in TaxEditor
Katja Luther wrote in #note-4:
> I think the second publisher information should be editable only if the first publi...
Katja Luther

04/05/2023

11:18 AM bug #1924 (Resolved): CIHORIEAE in-references in Footnotes
Verbatim year is already implemented. A test was added in the class VerbatimTimePeriodFormatterTest Belen Escobari
10:59 AM Revision fda4c183 (cdmlib): ref #1924: verbatim date is added: 2008 [“2007”]
Belen Escobari

04/03/2023

01:29 PM bug #2121 (Resolved): Series part is not reflected in cache strategy
This is already implemented and an example is given in the class ReferenceDefaultCacheStrategyTest method testBookGet... Belen Escobari
11:34 AM task #10295 (Closed): Parse verbatim year in reference
der Formatierung-Input, der korrekt geparst wird ist:
Kilian N. & Raab-Straube E. von "2009" [2008]: Flora der Al...
Belen Escobari

03/31/2023

09:40 AM Revision bb863be9 (taxeditor): ref #10287: open edit wizard by double click
Katja Luther

03/30/2023

04:18 PM task #9975 (Resolved): Create new UML diagramms for the CDM
The new diagrams were updated
https://cybertaxonomy.org/cdm-uml/v532/webpage/Diagrams.html
Belen Escobari
02:58 PM Revision b7b2f0b7 (taxeditor): ref #10287: better order of menu items
Katja Luther
02:27 PM bug #10287 (In Progress): Remaining issues for Remote Server View
Katja Luther
02:26 PM Revision 67d1d741 (taxeditor): ref #10287: keep order of remote server entries
Katja Luther
01:24 PM Revision fb1658e1 (taxeditor): ref #10288: shorter label
Katja Luther
01:23 PM Revision a72044a9 (taxeditor): ref #10288: enable/disable fields depending on presence of first
publisher informations Katja Luther
11:50 AM feature request #10294 (New): Zoom in and out for the Name Editor
mail Maryam Malekmohammady:
I was looking for a tool in TaxEditor to zoom in the taxon names etc. without changing...
Katja Luther
11:41 AM Revision 44763fd8 (cdm-dataportal): remove System.err.println
Katja Luther
11:30 AM Revision 79b6f917 (cdm-dataportal): minor
Katja Luther
11:27 AM Revision 8a516583 (cdm-dataportal): Test
Katja Luther

03/29/2023

02:34 PM bug #10293: Person search results does not show identifier correctly
This seems to be related to this ticket: #7375 Katja Luther
12:53 PM bug #10293: Person search results does not show identifier correctly
I give this ticket to you Andreas because of the not completely initialized identifiers returned by the AdvancedBeanI... Katja Luther
10:12 AM bug #10293: Person search results does not show identifier correctly
Debugging the portal code shows that the WS result does not contain the type of the identifier and therefore only the... Katja Luther
10:10 AM bug #10293 (Worksforme): Person search results does not show identifier correctly
mail WHK:
Hallo Katja,
die Autorenseite anschauend (https://www.phycobank.org/cdm_dataportal/search/agent/?mar...
Katja Luther

03/28/2023

10:46 PM bug #10269 (Closed): Selecting existing name for typification
Wolf-Henning Kusber wrote in #note-13:
> On an small screen the red text is hard to read. Is it possible to set the ...
Andreas Müller
01:58 PM bug #10269: Selecting existing name for typification
Implemented as expected.
On an small screen the red text is hard to read. Is it possible to set the Warning Bold?
Wolf-Henning Kusber
03:33 PM Revision f57d850e (cdm-vaadin): ref #10269 change color for warning from tomato to red
Andreas Müller
09:44 AM bug #10292: Filter Metadata from Cdm Instance and from MediaServer
mail NoK:
ich bin mir nicht komplett sicher, aber ich denke, bis auf allenfalls wenige Ausnahmen in 2021 (wo ich mög...
Katja Luther

03/27/2023

03:52 PM bug #10292 (In Progress): Filter Metadata from Cdm Instance and from MediaServer
Katja Luther
03:36 PM bug #10292: Filter Metadata from Cdm Instance and from MediaServer
Please link to the old related ticket from last milestone Andreas Müller
02:23 PM bug #10292 (Duplicate): Filter Metadata from Cdm Instance and from MediaServer
Currently only the metadata from Media Server are filtered, this results in duplicated metadata caused by different l... Katja Luther
03:38 PM feature request #10240: Improve DOI formatting for references
We also need a method to get an html representation of the source (see sourceAsHtml() in ManifestComposer/cdmlib-remote) Katja Luther
12:44 PM feature request #10288: Implement publisher and placePublished2 in TaxEditor
To short the label I suggest to use "2nd ..." Andreas Müller
11:23 AM feature request #10288 (In Progress): Implement publisher and placePublished2 in TaxEditor
I think the second publisher information should be editable only if the first publisher/place published is available. Katja Luther
10:20 AM feature request #10288 (Resolved): Implement publisher and placePublished2 in TaxEditor
this is implemented, please review. Katja Luther
12:37 PM task #8514 (Resolved): remove all PhycoBank redmine instances
I guess this is fully implemented.
Katja, can you have a final look if AKs notes " Ein weiteres Ticket in dem alte ...
Andreas Müller
12:29 PM feature request #10291 (In Progress): Implement second publisher information for bibliographic reference formatting and other remaining issues
I will have a look. But please keep ticket assiged to you until all issues of the ticket are solved. Andreas Müller
12:20 PM feature request #10291 (Feedback): Implement second publisher information for bibliographic reference formatting and other remaining issues
A second place published and a second publisher is now implemented in the references formatting as long as there is a... Belen Escobari
12:16 PM Revision ff9b4cc9 (cdmlib): ref #10291: Implement second place published and second publisher in
references formatting Belen Escobari
10:19 AM Revision 36a2a5f6 (taxeditor): ref #10288: add second publisher information to editor
Katja Luther

03/25/2023

08:57 AM Revision 7e88f951 (cdmlib): handle null values in min/max values (still open for lower/upper boundary)
Andreas Müller
07:38 AM feature request #10245 (Closed): #9626 Implement publisher information for bibliographic reference formatting
Remaining issues copied to #10291 Andreas Müller
07:33 AM bug #10269 (Resolved): Selecting existing name for typification
Andreas Müller

03/24/2023

04:20 PM Revision d0b5e93c (cdmlib): revert 8ee0f95cd3 due to unwanted code formatting
Andreas Müller
03:53 PM Revision ed302d40 (cdmlib): fix ReferencingObjectFormatter for Rights
Andreas Müller
02:55 PM bug #9766 (Closed): CDM vocabularies should not be editable
Andreas Müller
10:30 AM bug #9766: CDM vocabularies should not be editable
When trying to movie a feature via context menu to "test" I got
~~~
java.lang.NullPointerException
at eu.etaxo...
Andreas Müller
02:35 PM feature request #10245 (Resolved): #9626 Implement publisher information for bibliographic reference formatting
Formatting of References when publisher or placed published are missing were adapted.
publisher2 and place publis...
Belen Escobari
08:59 AM feature request #10245: #9626 Implement publisher information for bibliographic reference formatting
A second publisher and placePublished is now available (see #10286). The formatting can be adapted accordingly. Andreas Müller
02:34 PM feature request #10291 (Closed): Implement second publisher information for bibliographic reference formatting and other remaining issues
Follow up from #10245
Also fix: "Formatting of References when publisher or placed published are missing". This ...
Belen Escobari
02:30 PM Revision 8ee0f95c (cdmlib): ref #10245: formatting when publisher or place published is missing
Belen Escobari
12:37 PM Revision 219028f9 (taxeditor): fix potential NPE
Katja Luther
11:46 AM bug #10167 (Closed): Selecting an existing name and adding a new journal does not work for phycobank registration
Andreas Müller wrote in #note-16:
> Maybe we still need to check if the journal editing rights are taken away from t...
Andreas Müller
11:12 AM Revision c4555b9d (cdm-server): Merge branch 'release/5.36.0' into develop
jenkins
11:12 AM Revision 736be642 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
11:11 AM Revision d9e0a4b6 (cdm-server): updating poms for branch'release/5.36.0' with non-snapshot versions
jenkins
11:11 AM Revision 1ab50543 (cdm-webapp): Merge branch 'release/5.36.0' into develop
jenkins
11:11 AM Revision 3b672312 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
11:10 AM Revision a1de8410 (cdm-webapp): updating poms for branch'release/5.36.0' with non-snapshot versions
jenkins
11:10 AM Revision d169e1ad (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.36.0
jenkins
11:10 AM Revision 92b872af (cdm-vaadin): Merge branch 'release/5.36.0' into develop
jenkins
11:10 AM Revision 38e045dd (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
11:09 AM Revision b70597e7 (taxeditor): Merge branch 'release/5.36.0' into develop
jenkins
11:09 AM Revision 21b0112e (taxeditor): Merge branch 'release/5.36.0'
jenkins
11:07 AM Revision 0490740f (cdm-vaadin): updating poms for branch'release/5.36.0' with non-snapshot versions
jenkins
11:07 AM Revision e2cdc9db (cdm-vaadin): jenkins bumping cdmlib.version to 5.36.0
jenkins
11:07 AM Revision d2c9ba9b (cdm-dataportal): Merge branch 'release/5.36.0' into develop
jenkins
11:06 AM Revision 94e8767a (cdm-dataportal): updating poms for branch'release/5.36.0' with non-snapshot versions
jenkins
11:06 AM Revision d4ae2e98 (cdm-dataportal): release-preparation: production level css
jenkins
11:05 AM Revision 512dff36 (cdmlib): Updating develop poms back to pre merge state
jenkins
11:05 AM Revision 515dd759 (cdmlib): Merge branch 'master' into develop
jenkins
11:05 AM Revision ae90ab86 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
11:05 AM Revision 381ed920 (cdmlib): Merge branch 'release/5.36.0'
jenkins
10:52 AM Revision b2937e68 (cdmlib): updating poms for branch'release/5.36.0' with non-snapshot versions
jenkins
10:29 AM Revision 01a13a40 (cdmlib): fix potential NPE
Katja Luther
10:23 AM Revision 374527c4 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.36.0-SNAPSHOT
jenkins
10:23 AM Revision ba255c59 (cdm-webapp): updating poms for 5.37.0-SNAPSHOT development
jenkins
10:23 AM Revision 1d330a22 (cdm-webapp): updating poms for 5.36.0 branch with snapshot versions
jenkins
10:23 AM Revision e9af6a35 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.37.0-SNAPSHOT
jenkins
10:23 AM feature request #10221 (Closed): Add form to edit the json file with cdmserver info
Andreas Müller wrote in #note-16:
> The current implementation seems to destroy the order of the entries (at least i...
Katja Luther
12:03 AM feature request #10221 (Feedback): Add form to edit the json file with cdmserver info
The current implementation seems to destroy the order of the entries (at least in some cases):
![](clipboard-20230...
Andreas Müller
10:21 AM Revision 9b52a534 (cdm-vaadin): jenkins bumping cdmlib.version to 5.36.0-SNAPSHOT
jenkins
10:21 AM Revision 726eb358 (cdm-vaadin): updating poms for 5.37.0-SNAPSHOT development
jenkins
10:21 AM Revision 80ee03a6 (cdm-vaadin): updating poms for 5.36.0 branch with snapshot versions
jenkins
10:21 AM Revision ccd5e97f (cdm-vaadin): jenkins bumping cdmlib.version to 5.37.0-SNAPSHOT
jenkins
10:20 AM Revision 1530c41a (cdm-server): updating poms for 5.37.0-SNAPSHOT development
jenkins
10:20 AM Revision c272156e (cdm-dataportal): updating poms for 5.37.0-SNAPSHOT development
jenkins
10:20 AM Revision 31cbe190 (taxeditor): Updated version in pom / project files to taxeditor version : 5.37.0-SNAPSHOT and cdmlib version : 5.37.0-SNAPSHOT
jenkins
10:20 AM Revision 8010a75a (taxeditor): Updated version in pom / project files to taxeditor version : 5.36.0 and cdmlib version : 5.36.0
jenkins
10:15 AM Revision d91e720b (cdmlib): updating poms for 5.37.0-SNAPSHOT development
jenkins
09:59 AM Revision 560d226d (cdmlib): handle rights in ReferencingObjectFormatter
Andreas Müller
09:22 AM bug #8953: Focus not correctly evaluated for details view when switching between names
ERS:
jetzt konnte ich es wieder rekonstruieren. Es hängt anscheinend mit der neuen Konstruktion einer homotypische...
Andreas Müller
09:02 AM Revision 7ab5034a (taxeditor): ref #9766 adapt message for default term moving
Andreas Müller
08:59 AM feature request #10286 (Closed): Add publisher2 and placePublished2 to Reference
Andreas Müller
08:56 AM feature request #10260 (Closed): Add resolve mechanism to (external) identifiers
Andreas Müller
08:55 AM Revision 6de44d76 (cdmlib): ref #10260 add getter for url created by urlPattern
Andreas Müller
08:42 AM feature request #10289 (New): Allow editing urlPattern in IdentifierType in TaxEditor
follow up for #10260 Andreas Müller
12:11 AM task #7192: DwC-A of phycobank names for GBIF
The above issues seem to be fixed. The error report does not include any issues.
However, there are currently 6132...
Andreas Müller

03/23/2023

11:56 PM bug #10269 (Feedback): Selecting existing name for typification
Please review. Andreas Müller
11:37 PM bug #10269 (Resolved): Selecting existing name for typification
Applied in changeset commit:cdm-vaadin|81e29f64521293f86c78c6deb172a9b7c3ac0f89. Andreas Müller
12:08 AM bug #10269: Selecting existing name for typification
In any case the curator has to fix the problem.
Currently the data entry by the submitter is aborted and the submitte...
Wolf-Henning Kusber
11:37 PM Revision 0eedbc5a (cdm-vaadin): cleanup
Andreas Müller
11:36 PM Revision 81e29f64 (cdm-vaadin): fix #10269 fix name should not be selectable for typification if not complete
Andreas Müller
10:39 PM feature request #10260 (Resolved): Add resolve mechanism to (external) identifiers
Field added. Still need followup ticket. Andreas Müller
09:30 PM Revision 4540b6b0 (cdmlib-apps): minor log4j2 issue
Andreas Müller
09:29 PM Revision 33f93632 (cdmlib-apps): fix person titleCache handling in BerlinModel import
Andreas Müller
09:28 PM Revision 406bec93 (cdmlib): remove unnecessary update script part
Andreas Müller
05:48 PM Revision 8954f1f7 (cdmlib): fix #10286 add publisher2 and placePublished2 (try again, cont. 3)
Andreas Müller
05:43 PM Revision 8d78f124 (cdmlib): fix #10286 add publisher2 and placePublished2 (try again, cont. 2)
Andreas Müller
05:34 PM Revision 63455873 (taxeditor): update test-h2 to v5.36.1 in taxeditor
Andreas Müller
05:33 PM Revision 5718eb89 (cdm-vaadin): update test-h2 to v5.36.1
Andreas Müller
05:32 PM Revision 74dd8092 (cdmlib): cleanup
Andreas Müller
05:31 PM Revision ccb96dc7 (cdmlib): fix #10286 add publisher2 and placePublished2 (try again, cont.)
Andreas Müller
05:31 PM Revision d8de50b4 (cdmlib): fix #10286 add publisher2 and placePublished2 (try again)
Andreas Müller
04:46 PM feature request #10288 (Closed): Implement publisher and placePublished2 in TaxEditor
follow up for #10286
Andreas Müller
04:24 PM bug #10287: Remaining issues for Remote Server View
I think we should try to implement it asap as this are only small issues and to fully close this issue. If it is more... Andreas Müller
03:26 PM bug #10287 (Closed): Remaining issues for Remote Server View
copied from #10221:
* ~~double click on a line in the table should open the form (same as context menu "edit")~~
...
Katja Luther
03:24 PM feature request #10221 (Resolved): Add form to edit the json file with cdmserver info
The remaining issues will come to a new ticket. Katja Luther
03:15 PM feature request #10221: Add form to edit the json file with cdmserver info
Katja Luther wrote in #note-12:
> Andreas Müller wrote in #note-8:
> > * maybe we should check if an entry is an ex...
Katja Luther
02:21 PM feature request #10221: Add form to edit the json file with cdmserver info
Andreas Müller wrote in #note-8:
> * maybe we should check if an entry is an exact duplicate of another entry or at ...
Katja Luther
02:06 PM feature request #10221: Add form to edit the json file with cdmserver info
Andreas Müller wrote in #note-8:
> * when deleting a record from the table the record is not removed fully but inste...
Katja Luther
11:43 AM feature request #10221: Add form to edit the json file with cdmserver info
I would create a new Ticket and would fix it for the next release. This ticket I would close so that we can do the re... Katja Luther
03:13 PM Revision 875aa5c0 (taxeditor): ref #10221: add handling for same names
Katja Luther
01:55 PM Revision d26ee030 (taxeditor): ref #10260 change identifierType in TaxEditor
Andreas Müller
01:46 PM Revision a5f29366 (cdm-vaadin): update test-h2 to v5.36
Andreas Müller
01:46 PM Revision e73c34a4 (cdm-vaadin): cleanup
Andreas Müller
01:43 PM Revision 2bcf811c (cdmlib): revert removing place published
Andreas Müller
01:38 PM feature request #10286 (Resolved): Add publisher2 and placePublished2 to Reference
Applied in changeset commit:cdmlib|e403d89f3a7ac755dfb180ca9351482f8387c0d0. Andreas Müller
12:01 PM feature request #10286 (In Progress): Add publisher2 and placePublished2 to Reference
Andreas Müller
08:48 AM feature request #10286 (Closed): Add publisher2 and placePublished2 to Reference
... references sometimes do have >1 publisher
copied from #10245
Andreas Müller
01:38 PM Revision 4a8d3749 (cdmlib): cleanup
Andreas Müller
01:38 PM Revision e403d89f (cdmlib): fix #10286 add publisher2 and placePublished2
Andreas Müller
01:09 PM Revision a0848a73 (cdmlib): ref #10260 change IdentifierType class in cdmlib and add urlPattern attribute
Andreas Müller
01:05 PM Revision 97863fae (taxeditor): ref #10221: add missing change sin CdmServerInfoCOnfig
Katja Luther
12:55 PM bug #9766 (Resolved): CDM vocabularies should not be editable
This is fixed, please review. Katja Luther
12:38 PM bug #9766 (Feedback): CDM vocabularies should not be editable
Now it is (again?) possible to move a term from a non-CDM voc to a CDM-voc via d&d. I tried with "Delete2" from "Dele... Andreas Müller
11:39 AM bug #9766 (Resolved): CDM vocabularies should not be editable
Andreas Müller wrote in #note-12:
> Moving a term via context menu does not work anymore. I tried with multiple feat...
Katja Luther
12:54 PM Revision 19436c33 (taxeditor): ref #10221: some improvements for remote server view
Katja Luther
12:45 PM Revision e66b3057 (taxeditor): ref #9766: fix to not allow d&d to default vocabulary
Katja Luther
11:44 AM bug #10281 (Closed): TaxEditor extremely slow when using another language as default language
It works as expected. Katja Luther
11:39 AM Revision bc30f990 (taxeditor): ref #9766: fix moving terms via menu
Katja Luther
11:38 AM Revision f3e8dc28 (cdmlib-apps): ref #10260 change IdentifierType class in app-import
Andreas Müller
11:34 AM bug #10234 (Closed): MetaData of images coming from the new image server are not shown
After some confusions because of different links in production and test, we could show, that the metadata for the ima... Katja Luther

03/22/2023

11:15 PM bug #10269: Selecting existing name for typification
Wolf-Henning Kusber wrote in #note-7:
>...
> WHK: This is the only way to proceed. But my **question** is: Do we al...
Andreas Müller
09:39 PM bug #9766 (Feedback): CDM vocabularies should not be editable
Andreas Müller
09:39 PM bug #9766: CDM vocabularies should not be editable
Moving a term via context menu does not work anymore. I tried with multiple feature and state terms which do not belo... Andreas Müller
09:49 AM bug #9766 (Resolved): CDM vocabularies should not be editable
Missed to commit the changes and now also added that the standard vocabularies are not shown in the term choosing wiz... Katja Luther
07:09 PM bug #10234 (Feedback): MetaData of images coming from the new image server are not shown
Do you still add the results of cichorieae testing to this ticket? Andreas Müller
06:12 PM Revision b87e8ce9 (taxeditor): ref #9766 fix NPE in term search
Andreas Müller
06:11 PM Revision b63ad331 (taxeditor): cleanup
Andreas Müller
06:10 PM Revision e968031c (taxeditor): ref #10277: javadoc and gitignore
Andreas Müller
05:59 PM bug #5556 (Closed): Class Cast Exception in DefinedTermDaoImpl.getPartOf
reviewed by reviewing #10277 Andreas Müller
10:25 AM bug #5556: Class Cast Exception in DefinedTermDaoImpl.getPartOf
I guess this should be fixed now. Can you please review? Andreas Müller
10:21 AM bug #5556 (Resolved): Class Cast Exception in DefinedTermDaoImpl.getPartOf
Applied in changeset commit:cdmlib|9911282f76a46d2728fdb67476074376df81f745. Andreas Müller
10:16 AM bug #5556 (In Progress): Class Cast Exception in DefinedTermDaoImpl.getPartOf
Got a very similar problem again:
~~~
last remote service : http://132.248.13.83:8080/cdmserver/cdm_flora_mexico/...
Andreas Müller
05:57 PM bug #10277 (Closed): HibernateSystemException and BridgeException not in taxeditor dependencies
The issue is fixed by adding 2 missing libraries (in case a similar exception is thrown again), by fixing #5556 (the ... Andreas Müller
05:44 PM bug #10277: HibernateSystemException and BridgeException not in taxeditor dependencies
More research shows that the exception was thrown by hibernate search and a CCE during indexing:
~~~
org.springframe...
Andreas Müller
05:37 PM bug #10277: HibernateSystemException and BridgeException not in taxeditor dependencies
Generally the problem does only appear if NamedArea vocabularies are not handled correct in the CDM db. It happened a... Andreas Müller
05:35 PM bug #10277: HibernateSystemException and BridgeException not in taxeditor dependencies
Fixing the above dependency lead to a followup exception for another missing dependency. BridgeException in hibernate... Andreas Müller
05:54 PM task #10285 (New): Catch hibernate search exception so hibernate search dependencies are not needed anymore
copied from #10277
If hibernate search indexing throws an exception this may result in a HibernateSystemException...
Andreas Müller
05:30 PM Revision d59bd53a (taxeditor): ref #10277: fix link to hibernate-search-engine file
Andreas Müller
05:20 PM Revision 2f31cf6f (taxeditor): add hibernate-search to gitignore
Katja Luther
05:13 PM Revision 766393a3 (taxeditor): ref #10277: clean up pom
Katja Luther
05:03 PM Revision f50744da (taxeditor): add hibernate-search
Katja Luther
04:05 PM feature request #10284 (Closed): Allow term trees as filters for named area dialogues
... and others if others exist.
In future, the filter should only work on term trees.
This is needed for eFloraMex...
Andreas Müller
04:03 PM task #10283 (New): Add mapping for non-mexican areas for eFloraMex
... as technical annotations for areas Andreas Müller
03:53 PM feature request #10282 (New): Automatically add unique measurement unit in details view
If a feature allows only a single measurement unit this should be automatically added to each new fact of this featur... Andreas Müller
03:20 PM feature request #10245: #9626 Implement publisher information for bibliographic reference formatting
Andreas Müller wrote in #note-22:
> Please also add a test with only the publisher given (without place published). ...
Andreas Müller
01:32 PM bug #10281: TaxEditor extremely slow when using another language as default language
This should be fixed. Please review.
Note: there is a lot more potential for performance improvement related to te...
Andreas Müller
01:24 PM bug #10281 (Resolved): TaxEditor extremely slow when using another language as default language
Applied in changeset commit:taxeditor|0c56e9e669af16bf4fa9db312d5a641ed099e399. Andreas Müller
10:53 AM bug #10281: TaxEditor extremely slow when using another language as default language
After fixing this we should also check, why the term tree editor is using this method so often. Why is it used e.g. w... Andreas Müller
10:41 AM bug #10281 (Closed): TaxEditor extremely slow when using another language as default language
e.g. when selectin Spanisch as "Term" language.
The reason for this seems to be call of `Preferences.getGlobalLang...
Andreas Müller
01:28 PM Revision a55746f9 (cdmlib): ref #10234: the keyword-metadata still needed as long as it is not
migrated Katja Luther
01:24 PM Revision db4c8d6d (taxeditor): cleanup
Andreas Müller
01:24 PM Revision 0c56e9e6 (taxeditor): fix #10281 fix caching for global language
Andreas Müller
11:44 AM task #10205 (Closed): Update GBIF import to modern json library.
Andreas Müller
10:22 AM Revision fc70fa41 (cdmlib): cleanup
Andreas Müller
10:20 AM Revision 9911282f (cdmlib): fix #5556 try to fix CCE in getPartOf and getKindOf
Andreas Müller
09:48 AM Revision c002440d (taxeditor): ref #9766: fix filter for terms
Katja Luther
09:45 AM Revision 30f3710a (taxeditor): ref #9766: do not show standard vocabularies for moving term to
Katja Luther
08:53 AM Revision 917e944d (taxeditor): ref #9766: moving default terms should not be possible.
Katja Luther
08:47 AM bug #10274 (Closed): Opening a gathering event does not work in ReferencingObjectsView
works as expected. Katja Luther
08:26 AM bug #10278 (Closed): Fix language selection for features in factual data view
You have to open a new taxon then the change works without a restart of the editor (tested with nightly) Katja Luther

03/21/2023

11:35 PM bug #10274: Opening a gathering event does not work in ReferencingObjectsView
I tested with person "GatheringEvent Tester" in rem_conf_am and it worked. Can you also review? Andreas Müller
11:25 PM bug #9766 (Feedback): CDM vocabularies should not be editable
Drag&drop from and to CDM vocabularies is still possible. Move to ... I could not check as there was an NPE in the pa... Andreas Müller
11:22 PM Revision 8b5235cf (taxeditor): fix NPE in StoreUtil.compareBySearchString
Andreas Müller
11:22 PM Revision 1f4038c2 (taxeditor): cleanup
Andreas Müller
11:14 PM bug #10278 (Feedback): Fix language selection for features in factual data view
Seems to work after restart of the editor. Please decide if it is simple to make it work also without restarting. If ... Andreas Müller
12:45 PM bug #10278 (Resolved): Fix language selection for features in factual data view
I guess this is fixed and can be reviewed. Andreas Müller
12:44 PM bug #10278 (Closed): Fix language selection for features in factual data view
Andreas Müller
10:49 PM feature request #10221 (Feedback): Add form to edit the json file with cdmserver info
Generally it works. Some minor issues:
* ~~the table should include the "check cdmlib version" value~~
* ~~the defau...
Andreas Müller
12:01 PM feature request #10221: Add form to edit the json file with cdmserver info
please review, the json file is now well formatted as well. Katja Luther
04:19 PM bug #10277: HibernateSystemException and BridgeException not in taxeditor dependencies
Can you send me the stacktrace and can you check locally in your IDE if the class is available. From the stacktrace c... Andreas Müller
03:54 PM bug #10277 (Feedback): HibernateSystemException and BridgeException not in taxeditor dependencies
Unfortunatly I got this exception again with nightly and the flora mexico instance on test. Katja Luther
03:49 PM bug #10280 (Closed): Translation of bibliography does not work for feature list on taxon page
After translation of bibliography only the label of the block is correctly shown, the label of the item list is still... Katja Luther
03:25 PM task #10205 (Resolved): Update GBIF import to modern json library.
I checked the actual files with the files before reverting the json lib removing and checked the import, which still ... Katja Luther
02:15 PM bug #10234 (Resolved): MetaData of images coming from the new image server are not shown
default values are adapted, I will copy the production db to test and then you can test with Abutilon theophrasti and... Katja Luther
01:14 PM bug #10234: MetaData of images coming from the new image server are not shown
I need to adapt the default value for the preference, then we can close this ticket. I will do that today. Katja Luther
02:11 PM Revision b81c22fd (cdmlib): ref 10234: adapt preference default value to new meta data key names
Katja Luther
01:21 PM bug #10279 (New): It should be possible to add nomenclatural reference in wizard for new name
mail ERS:
Hallo Andreas,
ich habe eine technische Frage zum TaxEditor:
Wenn ich ein Homonym hinzufüge, das n...
Katja Luther
01:19 PM task #10249: Mapping for metadata labels of images in portal
There is an enumeration for the default labels, but we should think about a solution which holds the label of the met... Katja Luther
01:11 PM bug #8953: Focus not correctly evaluated for details view when switching between names
ERS:
was ich meine ist dieses (siehe screenshot)
die hellblaue Tönug unter Nardurus orientalis verleitet mich zu de...
Andreas Müller
12:33 PM Revision 8f346bc4 (taxeditor): ref #10221: save the json file in human readable form
Katja Luther
11:27 AM Revision 5d4b8cfa (taxeditor): fix term representation
Katja Luther

03/20/2023

09:52 PM bug #10277 (Resolved): HibernateSystemException and BridgeException not in taxeditor dependencies
I tried to fix this by adding the spring-orm dependency. Please review.
In the long run we should try to find a wa...
Andreas Müller
09:42 PM bug #10277 (Closed): HibernateSystemException and BridgeException not in taxeditor dependencies
~~~
last remote service : http://132.248.13.83:8080/cdmserver/cdm_flora_mexico/remoting/taxonnode.service
last remo...
Andreas Müller
09:49 PM Revision caf9b097 (taxeditor): ref #10277 try to fix HibernateSystemException handling
Andreas Müller
06:04 PM task #9975: Create new UML diagramms for the CDM
Remove all not necessary files from https://cybertaxonomy.org/cdm-uml/v532/ (e.g. all java files) Andreas Müller
06:02 PM task #9975 (Feedback): Create new UML diagramms for the CDM
Andreas Müller
06:01 PM task #9975: Create new UML diagramms for the CDM

* clicking 2x on the diagram symbol ![](clipboard-202303201701-16jcd.png) should not remove the diagram
* the clicke...
Andreas Müller
04:57 PM task #9975: Create new UML diagramms for the CDM
Some issues:
* root node should not expandable/collapsable
* the following symbol does not seem to have an (importa...
Andreas Müller
03:52 PM task #10205: Update GBIF import to modern json library.
Is this for final review? Andreas Müller
03:49 PM feature request #10221: Add form to edit the json file with cdmserver info
Is this for review already? Andreas Müller
03:00 PM feature request #10245: #9626 Implement publisher information for bibliographic reference formatting
Please also add a test with only the publisher given (without place published). This case currently seems not to be i... Andreas Müller
02:57 PM feature request #10245 (Feedback): #9626 Implement publisher information for bibliographic reference formatting
According to the data model also journals and print series have a publisher. Can you please discuss with Norbert if t... Andreas Müller
02:42 PM feature request #10245: #9626 Implement publisher information for bibliographic reference formatting
Implementation is ok for book and booksection. I added tests for generic, cd and thesis and added implementaton for r... Andreas Müller
02:53 PM Revision 6baebe22 (cdmlib): ref #10245 fix publisher handling for report and proceedings
Andreas Müller
02:39 PM Revision 2834e6a1 (cdmlib): ref #10245 add publisher handling and/or testing for generic, thesis, report, map, database cdDvd
Andreas Müller

03/17/2023

07:47 PM bug #10276 (New): Cleanup person data with undefined information
Since using the new person data model with defined nomenclaturalTitle and collectorTitle there is some data that has ... Andreas Müller
03:45 PM bug #10274 (Resolved): Opening a gathering event does not work in ReferencingObjectsView
Applied in changeset commit:cdmlib|c0e2367321a9e230f5454ea1e0e736a0da75374c. Andreas Müller
01:08 PM bug #10274: Opening a gathering event does not work in ReferencingObjectsView
The related code seems to be here:
~~~
public List<FieldUnit> findFieldUnitsForGatheringEvent(UUID gatheringE...
Andreas Müller
01:04 PM bug #10274 (Closed): Opening a gathering event does not work in ReferencingObjectsView
still need to check if this is a cdmlib issue.
Happened while trying to open the GE related to team ("Thomas D, Pers...
Andreas Müller
03:45 PM Revision c0e23673 (cdmlib): fix #10274 hopefully fix class type issue in OccurrenceDaoHibernateImpl.findFieldUnitsForGatheringEvent()
Andreas Müller
02:32 PM bug #10275 (New): Improve term tree in preferences
The term tree of preference pages is very slow for large vocabularies, this needs to be fixed.
There are some other...
Katja Luther
01:16 PM Revision 202889e9 (cdmlib): ref #10037: use host.docker.internal as host and send mail again
Katja Luther
11:46 AM bug #10269: Selecting existing name for typification
WHK: no changes in the user-rights, the references of stored names (as names only) should be completed on the PhycoBa... Wolf-Henning Kusber
11:27 AM Revision 3bbc8d2a (cdmlib): ref #10245: add publisher information for book section
Belen Escobari

03/16/2023

02:13 PM Revision 602986a7 (cdmlib): ref #10037: if mail sending fails use host.docker.internal as host
Katja Luther

03/15/2023

11:57 PM feature request #10273: WFO content export (DwC-A)
ERS:
„Cc“ was rarely and inconsistently used and is going to be replaced with more accurate data.
AM:
So wha...
Andreas Müller
04:46 PM feature request #10273: WFO content export (DwC-A)
AM:
Das Hauptproblem beim Mapping der Areale wird sein, die Areale zu mappen, die auf mehrere TDWG Areale mappen. ...
Andreas Müller
11:00 AM feature request #10273 (In Progress): WFO content export (DwC-A)
DwC-A export for WFO (World Flora Online). This includes the specific WFO DwCA format. It also inlcudes an area mappi... Andreas Müller
12:46 PM Revision 071e99c8 (taxeditor): adapt MANIFEST.MF and pom.xml to version before reverting json-lib
Katja Luther
11:19 AM bug #2121: Series part is not reflected in cache strategy
Please mention examples in tests if you think it is already implemented. Andreas Müller
11:18 AM bug #2121: Series part is not reflected in cache strategy
You could check here, if series is still not used in book formatting or if this ticket is outdated. Andreas Müller
11:04 AM Revision 42bf2169 (taxeditor): add commons-codev again
Katja Luther
08:34 AM Revision d75c06de (taxeditor): remove json-lib from build.properties
Katja Luther

03/14/2023

04:38 PM task #7811 (Feedback): Import higher classifications
Wolf-Henning Kusber wrote in #note-26:
> Reopened for WoRMS and other classifications.
So this means that Frey W....
Andreas Müller
04:33 PM bug #10272 (New): Import WoRMS (and other) higher classifications for Phycobank
Copied from #7811 (and #7420):
The following classifications needs to be imported using the import created for #74...
Andreas Müller
02:16 PM Revision 689959db (taxeditor): add commons-collections4 in build.properties
Katja Luther
02:06 PM Revision 7f85ab75 (taxeditor): add commons-collections4 again
Katja Luther
01:26 PM feature request #10245 (Resolved): #9626 Implement publisher information for bibliographic reference formatting
changes were gefixt/commited/geupdated. Is there something else to do yet for this ticket? Belen Escobari
10:32 AM feature request #10245: #9626 Implement publisher information for bibliographic reference formatting
the changes have been now commited and pushed Belen Escobari
01:15 PM Revision a6d777ac (taxeditor): Revert "Revert "ref #10205: remove libraries from pom""
This reverts commit 9423c69a72a97c45224033e00523d62bf502577f. Katja Luther
01:13 PM Revision 1de56bbe (taxeditor): Revert "Revert "ref #10205: remove not used libraries in build.properties""
This reverts commit 319c4f0cc697640ac789b2e7e3dff53f8232cf66. Katja Luther
12:51 PM Revision ba3917a9 (taxeditor): change nebula repository to archived one also in pom.xml
Katja Luther
12:50 PM Revision 2c1355f8 (taxeditor): change nebula repository to archived one
Katja Luther
10:18 AM Revision 45a64e2d (cdmlib): ref #10245: added publisher information in reference
Belen Escobari
10:17 AM Revision 03feeb43 (cdmlib): ref #10245 (#9626) add publisher and place published to ReferenceDefaultCacheStrategy in Book Sections
Belen Escobari
 

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