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From 02/19/2023 to 03/20/2023

03/20/2023

09:52 PM bug #10277 (Resolved): HibernateSystemException and BridgeException not in taxeditor dependencies
I tried to fix this by adding the spring-orm dependency. Please review.
In the long run we should try to find a wa...
Andreas Müller
09:42 PM bug #10277 (Closed): HibernateSystemException and BridgeException not in taxeditor dependencies
~~~
last remote service : http://132.248.13.83:8080/cdmserver/cdm_flora_mexico/remoting/taxonnode.service
last remo...
Andreas Müller
09:49 PM Revision caf9b097 (taxeditor): ref #10277 try to fix HibernateSystemException handling
Andreas Müller
06:04 PM task #9975: Create new UML diagramms for the CDM
Remove all not necessary files from https://cybertaxonomy.org/cdm-uml/v532/ (e.g. all java files) Andreas Müller
06:02 PM task #9975 (Feedback): Create new UML diagramms for the CDM
Andreas Müller
06:01 PM task #9975: Create new UML diagramms for the CDM

* clicking 2x on the diagram symbol ![](clipboard-202303201701-16jcd.png) should not remove the diagram
* the clicke...
Andreas Müller
04:57 PM task #9975: Create new UML diagramms for the CDM
Some issues:
* root node should not expandable/collapsable
* the following symbol does not seem to have an (importa...
Andreas Müller
03:52 PM task #10205: Update GBIF import to modern json library.
Is this for final review? Andreas Müller
03:49 PM feature request #10221: Add form to edit the json file with cdmserver info
Is this for review already? Andreas Müller
03:00 PM feature request #10245: #9626 Implement publisher information for bibliographic reference formatting
Please also add a test with only the publisher given (without place published). This case currently seems not to be i... Andreas Müller
02:57 PM feature request #10245 (Feedback): #9626 Implement publisher information for bibliographic reference formatting
According to the data model also journals and print series have a publisher. Can you please discuss with Norbert if t... Andreas Müller
02:42 PM feature request #10245: #9626 Implement publisher information for bibliographic reference formatting
Implementation is ok for book and booksection. I added tests for generic, cd and thesis and added implementaton for r... Andreas Müller
02:53 PM Revision 6baebe22 (cdmlib): ref #10245 fix publisher handling for report and proceedings
Andreas Müller
02:39 PM Revision 2834e6a1 (cdmlib): ref #10245 add publisher handling and/or testing for generic, thesis, report, map, database cdDvd
Andreas Müller

03/17/2023

07:47 PM bug #10276 (New): Cleanup person data with undefined information
Since using the new person data model with defined nomenclaturalTitle and collectorTitle there is some data that has ... Andreas Müller
03:45 PM bug #10274 (Resolved): Opening a gathering event does not work in ReferencingObjectsView
Applied in changeset commit:cdmlib|c0e2367321a9e230f5454ea1e0e736a0da75374c. Andreas Müller
01:08 PM bug #10274: Opening a gathering event does not work in ReferencingObjectsView
The related code seems to be here:
~~~
public List<FieldUnit> findFieldUnitsForGatheringEvent(UUID gatheringE...
Andreas Müller
01:04 PM bug #10274 (Closed): Opening a gathering event does not work in ReferencingObjectsView
still need to check if this is a cdmlib issue.
Happened while trying to open the GE related to team ("Thomas D, Pers...
Andreas Müller
03:45 PM Revision c0e23673 (cdmlib): fix #10274 hopefully fix class type issue in OccurrenceDaoHibernateImpl.findFieldUnitsForGatheringEvent()
Andreas Müller
02:32 PM bug #10275 (New): Improve term tree in preferences
The term tree of preference pages is very slow for large vocabularies, this needs to be fixed.
There are some other...
Katja Luther
01:16 PM Revision 202889e9 (cdmlib): ref #10037: use host.docker.internal as host and send mail again
Katja Luther
11:46 AM bug #10269: Selecting existing name for typification
WHK: no changes in the user-rights, the references of stored names (as names only) should be completed on the PhycoBa... Wolf-Henning Kusber
11:27 AM Revision 3bbc8d2a (cdmlib): ref #10245: add publisher information for book section
Belen Escobari

03/16/2023

02:13 PM Revision 602986a7 (cdmlib): ref #10037: if mail sending fails use host.docker.internal as host
Katja Luther

03/15/2023

11:57 PM feature request #10273: WFO content export (DwC-A)
ERS:
„Cc“ was rarely and inconsistently used and is going to be replaced with more accurate data.
AM:
So wha...
Andreas Müller
04:46 PM feature request #10273: WFO content export (DwC-A)
AM:
Das Hauptproblem beim Mapping der Areale wird sein, die Areale zu mappen, die auf mehrere TDWG Areale mappen. ...
Andreas Müller
11:00 AM feature request #10273 (In Progress): WFO content export (DwC-A)
DwC-A export for WFO (World Flora Online). This includes the specific WFO DwCA format. It also inlcudes an area mappi... Andreas Müller
12:46 PM Revision 071e99c8 (taxeditor): adapt MANIFEST.MF and pom.xml to version before reverting json-lib
Katja Luther
11:19 AM bug #2121: Series part is not reflected in cache strategy
Please mention examples in tests if you think it is already implemented. Andreas Müller
11:18 AM bug #2121: Series part is not reflected in cache strategy
You could check here, if series is still not used in book formatting or if this ticket is outdated. Andreas Müller
11:04 AM Revision 42bf2169 (taxeditor): add commons-codev again
Katja Luther
08:34 AM Revision d75c06de (taxeditor): remove json-lib from build.properties
Katja Luther

03/14/2023

04:38 PM task #7811 (Feedback): Import higher classifications
Wolf-Henning Kusber wrote in #note-26:
> Reopened for WoRMS and other classifications.
So this means that Frey W....
Andreas Müller
04:33 PM bug #10272 (New): Import WoRMS (and other) higher classifications for Phycobank
Copied from #7811 (and #7420):
The following classifications needs to be imported using the import created for #74...
Andreas Müller
02:16 PM Revision 689959db (taxeditor): add commons-collections4 in build.properties
Katja Luther
02:06 PM Revision 7f85ab75 (taxeditor): add commons-collections4 again
Katja Luther
01:26 PM feature request #10245 (Resolved): #9626 Implement publisher information for bibliographic reference formatting
changes were gefixt/commited/geupdated. Is there something else to do yet for this ticket? Belen Escobari
10:32 AM feature request #10245: #9626 Implement publisher information for bibliographic reference formatting
the changes have been now commited and pushed Belen Escobari
01:15 PM Revision a6d777ac (taxeditor): Revert "Revert "ref #10205: remove libraries from pom""
This reverts commit 9423c69a72a97c45224033e00523d62bf502577f. Katja Luther
01:13 PM Revision 1de56bbe (taxeditor): Revert "Revert "ref #10205: remove not used libraries in build.properties""
This reverts commit 319c4f0cc697640ac789b2e7e3dff53f8232cf66. Katja Luther
12:51 PM Revision ba3917a9 (taxeditor): change nebula repository to archived one also in pom.xml
Katja Luther
12:50 PM Revision 2c1355f8 (taxeditor): change nebula repository to archived one
Katja Luther
10:18 AM Revision 45a64e2d (cdmlib): ref #10245: added publisher information in reference
Belen Escobari
10:17 AM Revision 03feeb43 (cdmlib): ref #10245 (#9626) add publisher and place published to ReferenceDefaultCacheStrategy in Book Sections
Belen Escobari

03/13/2023

06:34 PM discussion #10263: How to handle "additional secundum sources" and other "citations"
another usecase by WGB:
Bibliographische Zitate mit Zusatzinformation als Ersatz für Konzeptrelationen. See Salvador...
Andreas Müller
05:27 PM feature request #10271 (In Progress): Implement CoL-DP export
Important for exports to Col and GCB and maybe also WFO. Alternatively implement it as DwC-A backbone export (which ... Andreas Müller
05:17 PM bug #10167 (Resolved): Selecting an existing name and adding a new journal does not work for phycobank registration
Maybe we still need to check if the journal editing rights are taken away from the submitter again appropriately. Andreas Müller

03/12/2023

01:40 PM bug #10269 (Feedback): Selecting existing name for typification
List of names with missing nom. ref. sent to WHK. Data needs to be cleaned.
Until then we need to decide how to ha...
Andreas Müller
01:29 PM bug #10269: Selecting existing name for typification
Names without nom. reference can be found via:
~~~ sql
SELECT tn.id, tn.titleCache, tn.nameCache, dtb.titleCache ...
Andreas Müller
01:33 PM task #10268: Selecting an existing name as basionym
List with names without nom. ref. sent to WHK. Data needs to be cleaned. Andreas Müller
01:30 PM task #10268: Selecting an existing name as basionym
Names without nom. reference can be found via:
~~~ sql
SELECT tn.id, tn.titleCache, tn.nameCache, dtb.titleCache ...
Andreas Müller

03/11/2023

07:55 PM task #10268: Selecting an existing name as basionym
*Navicula brekkaensoides* has no reference in the test version. So the problem is major but of minor relevance becaus... Wolf-Henning Kusber
07:35 PM bug #10167 (Closed): Selecting an existing name and adding a new journal does not work for phycobank registration
Andreas Müller

03/10/2023

06:24 PM bug #10167: Selecting an existing name and adding a new journal does not work for phycobank registration
The bugs mentioned in this Ticket are fixed. This ticket can be closed. (The linked tickets are extra tasks). This ti... Wolf-Henning Kusber
11:39 AM bug #10167: Selecting an existing name and adding a new journal does not work for phycobank registration
Main descripton related to #10269 Wolf-Henning Kusber
03:29 PM bug #10269: Selecting existing name for typification
Testsystem;: User selected genus name "Lepocinclis" and selected the availabele reference "Perty 1849" and got the fo... Wolf-Henning Kusber
03:27 PM bug #10269: Selecting existing name for typification
The issue is more a data issue, NOT related to #10167
I was not aware that the given example has a reference in the ...
Wolf-Henning Kusber
11:38 AM bug #10269 (Closed): Selecting existing name for typification
Rights: User
Action: User wants to provide a new type for an existing scientific name
Here: in Testsystem:
...
Wolf-Henning Kusber
03:11 PM Revision 675b465d (taxeditor): handle null values form referencing objects as exceptions
Andreas Müller
03:11 PM Revision 809db6c0 (taxeditor): cleanup
Andreas Müller
03:08 PM Revision 196e4fdb (cdmlib): javadoc
Andreas Müller
03:08 PM Revision 4fa9eb56 (cdmlib): remove getVocabularyEnum(Class)
Andreas Müller
12:35 PM discussion #10263: How to handle "additional secundum sources" and other "citations"
This has minor priority now as we found that portal administration allows other features to be handled as more or les... Andreas Müller
12:33 PM bug #10270 (New): Name used in source shown 2x when using source in content
for a feature in dataportal-admin-taxon-taxon profile-taxon profile feature block settings
It shows something like...
Andreas Müller
11:21 AM task #10268 (Feedback): Selecting an existing name as basionym
What do you mean with "rights: user"? Do you mean submitter? If yes, does this not happen with rights: curator? Andreas Müller
11:17 AM task #10268 (In Progress): Selecting an existing name as basionym
Rights: User
Action: User provides a new combination and wants to select a basionym or replaced synonym already in t...
Wolf-Henning Kusber
10:12 AM bug #10262 (Closed): Switch longitude and latitude in GeoLocationField
Andreas Müller
08:15 AM bug #10262: Switch longitude and latitude in GeoLocationField
Works as expected (Testsystem, Vaadin, functionality checked with help of the map view in Vaadin). Ticket can be closed. Wolf-Henning Kusber
08:06 AM bug #9766: CDM vocabularies should not be editable
Yes, please review. Katja Luther

03/09/2023

09:27 PM bug #9766 (Resolved): CDM vocabularies should not be editable
I guess this is for review? Andreas Müller
05:14 PM task #8514: remove all PhycoBank redmine instances
Could not solve the problem, but some informations what I found out:
redmine.phycobank.org is a cname for edit-commu...
Katja Luther
01:20 PM bug #10267 (New): After deleting a record in bulk editor re-search is not not done correctly
The bulkeditor shows many empty lines after deleting a record and saving it:
![](clipboard-202303091319-kleeg.png)...
Andreas Müller
01:01 PM bug #10266 (New): Linking navigator with taxon slows down TaxEditor
If linking is switched on in the navigator:
![](clipboard-202303091258-hku9v.png)
the TaxEditor slows down trem...
Andreas Müller
12:33 PM Revision 319c4f0c (taxeditor): Revert "ref #10205: remove not used libraries in build.properties"
This reverts commit 00280b838bbe2e4aaac440421a9ad6a7fa739355. Katja Luther
12:17 PM Revision 9423c69a (taxeditor): Revert "ref #10205: remove libraries from pom"
This reverts commit d88b3f76273ae41dd4fcaa2e4e785bab0414fe75. Katja Luther
12:07 PM bug #10265 (New): Change color for person fields "Abbrev title" and "Collector title" if not set
currently the grey is difficult to distinguish from ordinary black (which means that data is available).
The grey ...
Andreas Müller
11:56 AM bug #10264 (New): Update details view and referencing objects view after deduplication
Currently it still shows the data from before deduplication even if you explicitly click on the remaining record. Thi... Andreas Müller
11:30 AM Revision 7897e6d1 (cdmlib): ref #10205: test for textValue before calling textValue() on jsonNode
Katja Luther
11:17 AM Revision d88b3f76 (taxeditor): ref #10205: remove libraries from pom
Katja Luther
11:02 AM feature request #10221 (Resolved): Add form to edit the json file with cdmserver info
I put this to resolved already so we do not forget it for the release. Andreas Müller
11:01 AM task #10205 (Feedback): Update GBIF import to modern json library.
Andreas Müller
10:59 AM task #10205: Update GBIF import to modern json library.
Katja Luther wrote in #note-12:
> Thanks for recognizing ... I removed the libraries also from the properties file n...
Andreas Müller
10:54 AM task #10205: Update GBIF import to modern json library.
Katja Luther wrote in #note-13:
> Andreas Müller wrote in #note-10:
> > Constructions like "record.get(COUNTRY_CODE...
Andreas Müller
10:48 AM task #10205: Update GBIF import to modern json library.
Andreas Müller wrote in #note-10:
> Constructions like "record.get(COUNTRY_CODE).textValue();" seem to be dangerous ...
Katja Luther
10:42 AM task #10205 (Resolved): Update GBIF import to modern json library.
Thanks for recognizing ... I removed the libraries also from the properties file now. Katja Luther
10:40 AM Revision 00280b83 (taxeditor): ref #10205: remove not used libraries in build.properties
Katja Luther
10:15 AM discussion #10263: How to handle "additional secundum sources" and other "citations"
WGB:
Citation hat ja eigentich einen ganz eigenen Typ – im Feature Editor ist das aber einfach als Text definiert....
Andreas Müller
09:49 AM discussion #10263 (New): How to handle "additional secundum sources" and other "citations"
There are different sources/references/citations that need to be attached to a taxon.
* "the" secundum reference i...
Andreas Müller
10:02 AM Revision 7a64a6b4 (taxeditor): ref #10221: change symbol
Katja Luther

03/08/2023

03:56 PM feature request #6697 (Worksforme): reconstruct getReferencingObjects to return DTOs
This has been implemented some time ago already. Partly by using a DTO and by loading the labels asynchronously serve... Andreas Müller
03:52 PM feature request #6460 (Closed): Refactor referencing objects in a way that supplemental data know what object they belong to
At least for description sources this works now and shows deb information correctly starting in 5.36 Andreas Müller
02:33 PM Revision 1fbe5e2e (cdmlib): ref #6460 show feature for textData in refObjView and better handling for empty term labels
Andreas Müller
01:50 PM task #10205: Update GBIF import to modern json library.
In #10204 you did not only change Manifest.MF but also others (e.g. eu.etaxonomy.taxeditor.cdmlib/build.properties ).... Andreas Müller
01:46 PM task #10205 (Feedback): Update GBIF import to modern json library.
Constructions like "record.get(COUNTRY_CODE).textValue();" seem to be dangerous for throwing NPEs. Is it guaranteed t... Andreas Müller

03/07/2023

10:32 PM feature request #10245 (Feedback): #9626 Implement publisher information for bibliographic reference formatting
I can't see any new commits for ReferenceDefaultCacheStrategy or it's test class and also not attached to this ticket... Andreas Müller

03/06/2023

03:37 PM feature request #10245 (Resolved): #9626 Implement publisher information for bibliographic reference formatting
For review, please put status to "Resolved" (not Closed) and %Done to 70% Andreas Müller
12:45 PM feature request #10245 (Closed): #9626 Implement publisher information for bibliographic reference formatting
Belen Escobari

03/05/2023

10:35 AM feature request #10261 (Closed): Avoid type designation type selection dialogue
Andreas Müller
09:44 AM feature request #10261: Avoid type designation type selection dialogue
Reviewed. Thanks, works as expected. Ticket can be closed. Wolf-Henning Kusber
01:57 AM bug #10167 (Resolved): Selecting an existing name and adding a new journal does not work for phycobank registration
Should generally work now. Some fine tuning still necessary (e.g. status message and which fields are read-only etc.)... Andreas Müller
01:35 AM bug #10248 (Closed): Vocabulary is not shown in TermSearch
Works as expected Andreas Müller
01:35 AM bug #10244 (Closed): Modifying text of quantitative data not saved
Works as expected Andreas Müller
12:46 AM Revision 4241b0ae (cdm-vaadin): ref #10167 allow selecting existing name for registration without update rights
Andreas Müller
12:45 AM Revision 39da079f (cdm-vaadin): cleanup
Andreas Müller

03/04/2023

09:38 PM Revision c0f64e45 (cdm-vaadin): ref #10262 fix order for long and lat (cont.)
Andreas Müller
09:11 PM Revision 197bd187 (cdm-vaadin): add generics to presenter and view and cleanup
Andreas Müller
06:49 PM Revision 8c995365 (cdm-vaadin): cleanup
Andreas Müller
06:00 PM bug #10167: Selecting an existing name and adding a new journal does not work for phycobank registration
Andreas Müller wrote in #note-3:
> WHK:
>
> Wenn Journal/Book neu anzulegen: Fehlermeldung. Referenz mit neuem Jo...
Andreas Müller
12:54 PM bug #10167: Selecting an existing name and adding a new journal does not work for phycobank registration
New Journal: problem is, that variable `crud` is not set for the in-reference presenter. This is missing in `Referenc... Andreas Müller
05:58 PM feature request #10261: Avoid type designation type selection dialogue
please review Andreas Müller
05:57 PM feature request #10261 (Resolved): Avoid type designation type selection dialogue
Applied in changeset commit:cdm-vaadin|d418263585cad48dcee5c576fb57a758b3022c3b. Andreas Müller
05:21 PM feature request #10261 (Closed): Avoid type designation type selection dialogue
The current selection dialogue for type designation types (name type designation or specimen type designation) is not... Andreas Müller
05:58 PM bug #10262: Switch longitude and latitude in GeoLocationField
please review Andreas Müller
05:57 PM bug #10262 (Resolved): Switch longitude and latitude in GeoLocationField
Applied in changeset commit:cdm-vaadin|7563c1bec4fcb0205b0609ceeef3c7482d9d06ab. Andreas Müller
05:55 PM bug #10262 (Closed): Switch longitude and latitude in GeoLocationField
Default for long and lat is to first mention latitude then longitude. So we need to switch the 2 fields in phycobank ... Andreas Müller
05:57 PM Revision f38c6be8 (cdm-vaadin): ref #10167 fix not updatable in-reference for submitters
Andreas Müller
05:56 PM Revision 7563c1be (cdm-vaadin): fix #10262 fix order for long and lat
Andreas Müller
05:37 PM Revision d4182635 (cdm-vaadin): fix #10261 remove type designation type selection dialogue
Andreas Müller
05:37 PM Revision 6ebd026b (cdm-vaadin): cleanup
Andreas Müller
05:25 PM Revision 187dedb7 (cdmlib): add default behavior to RegistrationIdentifierMinter (needed if configuration data is not available)
Andreas Müller
05:24 PM Revision 3ffd4933 (cdmlib): add fromTypeAndId factory method to TypedEntityReference
Andreas Müller
05:24 PM Revision fe8f3afe (cdmlib): cleanup
Andreas Müller
05:23 PM Revision 5ca01306 (cdmlib): ref #10261 and rank class to name reference in registration DTO
Andreas Müller
03:36 PM Revision 3d377bb6 (cdmlib): cleanup
Andreas Müller
11:11 AM Revision 8676938f (cdm-vaadin): try fix compile error (cont.)
Andreas Müller
11:05 AM Revision df764a3e (cdm-vaadin): try fix compile error
Andreas Müller
11:01 AM Revision 447eabe2 (cdm-vaadin): cleanup
Andreas Müller
09:46 AM Revision fcae1e02 (cdm-vaadin): cleanup
Andreas Müller

03/03/2023

09:31 PM task #9940: Handle type category formatting in compact typification strings
NoK:
Links als icon, ja stimmt ist besser. (Note by AM: later we discussed and checked on other pages that this is...
Andreas Müller
02:17 PM feature request #10260: Add resolve mechanism to (external) identifiers
This is needed for #8840 Andreas Müller
02:17 PM feature request #10260 (Closed): Add resolve mechanism to (external) identifiers
Identifiers like the WFO-Name-ID should be resolvable. Currently they are usually stored as simple IDs, like "wfo-000... Andreas Müller
12:46 PM task #8840: Display identifiers in the dataportal
This is also relevant for e.g. WFO identifiers in E+M and others.
But be aware that WFO-IDs are name related. MCL ID...
Andreas Müller
09:06 AM Revision 1342fa0d (cdm-server): adapt ssmtp.conf
Katja Luther
08:54 AM bug #8101: cdm-server docker container uses wrong timezone
This is solved for our servers, the docker container now uses CET, need some more research how to use the same timezo... Katja Luther
08:25 AM Revision 92bb3a9c (cdm-server): ref #10037: add smtp to docker container
Katja Luther

03/02/2023

11:01 PM Revision 6e5f28d8 (cdmlib): cleanup
Andreas Müller
03:17 PM Revision f1ef518f (taxeditor): ref #9766: use new method to get vocabulary by uuid to check whether a
vocabulary is default or not Katja Luther
03:15 PM Revision e623dcf9 (cdmlib): ref #9766: add method to get vocabulary by uuid
Katja Luther
03:14 PM bug #9766: CDM vocabularies should not be editable
I implemented it with the VocabularyEnum and it seems to work. I would commit it and you can have a look whether it i... Katja Luther
01:31 PM bug #9766: CDM vocabularies should not be editable
We could use the VocabularyEnum and add a method getVocabularyByUuid or a method to check whether a vocabulary is par... Katja Luther
02:40 PM task #8514 (In Progress): remove all PhycoBank redmine instances
Andreas Müller
02:35 PM task #8514: remove all PhycoBank redmine instances
https://redmine.phycobank.org/ links to production CDM Server. This redirect/alias needs to be removed. KL will care. Andreas Müller
02:34 PM task #8514: remove all PhycoBank redmine instances
AM:
Ich räume gerade bei Phycobank ein bisschen auf und bin dabei auf #8514 gestoßen, also "remove all PhycoBank r...
Andreas Müller
02:22 PM bug #8101: cdm-server docker container uses wrong timezone
As you currently work on docker maybe you can find a solution for this issue. Andreas Müller
02:19 PM feature request #8082: cdm-server docker image allows running the cdm-server as non root user
This is not implemented yet. Katja Luther
02:07 PM feature request #8082: cdm-server docker image allows running the cdm-server as non root user
Can you check if this is still open. But has not so high priority I guess. Andreas Müller
12:53 PM bug #10259: Terms of the default vocabularies should not be moved or deleted
Katja Luther wrote in #note-6:
> There is a ticket already to avoid editing CDM vocabularies, maybe this is a duplic...
Andreas Müller
12:43 PM bug #10259: Terms of the default vocabularies should not be moved or deleted
There is a ticket already to avoid editing CDM vocabularies, maybe this is a duplicate. Katja Luther
12:32 PM bug #10259: Terms of the default vocabularies should not be moved or deleted
Andreas Müller wrote in #note-1:
> This has only been reported for context menu related moving. In general it should...
Katja Luther
11:51 AM bug #10259: Terms of the default vocabularies should not be moved or deleted
This has only been reported for context menu related moving. In general it should already be implemented (but better ... Andreas Müller
11:34 AM bug #10259 (New): Terms of the default vocabularies should not be moved or deleted
Currently the move of standard terms is not disabled, but should! Katja Luther
11:31 AM bug #10258 (New): Improve usability of term search dialog
The term search dialog for moving a term is originally the pure term search dialog developed for additivity. For the ... Katja Luther

03/01/2023

04:51 PM feature request #10255: Add additional option for sec reference handling
AM:
vielleicht können wir das „keep sec ref with name, no warning“ nennen, oder so.
Andreas Müller
04:41 PM feature request #10255: Add additional option for sec reference handling
This is for swap and move. Andreas Müller
01:03 PM feature request #10255 (New): Add additional option for sec reference handling
We need an additional option for the secundum reference handling as preference. This option should allow different se... Katja Luther
02:55 PM feature request #10257 (New): Additional person identifiers
Beside ORCID we could add
* VIAF (VIrtual International Authority File)
* ISNI (International Standard Name Ide...
Andreas Müller
02:52 PM bug #10256 (New): Quick person entry via identifier (ORCID, IPNI, ...) for taxeditor
copied from #9106
The data entry for persons could be simplified by a mechanism which fetches the details from an ...
Andreas Müller
02:42 PM task #8201: test all delete functionality in the RegistrationUI
WHK:
All above issues are solved except for #note-19 (Eine Reference ist in der Cache-Anzeige nachdem sie gelösch...
Andreas Müller
01:43 PM task #8201: test all delete functionality in the RegistrationUI
Test in Vaadin test (20023-03-01):
Article not linked to any registration can be deleted without problem.
....
Wolf-Henning Kusber
01:13 PM task #8201 (In Progress): test all delete functionality in the RegistrationUI
Andreas Müller
02:21 PM task #7192: DwC-A of phycobank names for GBIF
Do these data issues still need to be fixed? Andreas Müller
01:20 PM feature request #6170 (Feedback): Selfregistration widget
Is this still an open issue? We already seem to have a UI for selfregistration which seems to cover this. If there ar... Andreas Müller
11:06 AM bug #9070 (Closed): Adapt preference page to feature.isAvailableFor...
This seems to work correctly. Follow up ticket for "occurrence features": #10254 Andreas Müller
11:02 AM feature request #10254 (New): Implement preference page for occurrence features
Copied from #9070
Preferences for features are now based on "available for". However, there is no "occurrence feat...
Andreas Müller
10:54 AM bug #10158: Remove "Description Element" from view labels
Also we may add a short label for the fact, e.g. "Common Name: Sonnenblume (German, Germany)" using the according for... Andreas Müller
10:25 AM bug #10158: Remove "Description Element" from view labels
In the given context it might be enough to only show the feature label and fully remove "Description Element: ". Andreas Müller

02/28/2023

01:12 PM bug #10252: Session handling in name bulk editor not correct
Note: also here the first bulk editor (agent bulk editor) was open for multiple days already Andreas Müller
12:36 PM bug #10252: Session handling in name bulk editor not correct
It became even more strange. After closing all open editors (1 taxon editor and 1 agent bulk editor) and reopening th... Andreas Müller
12:21 PM bug #10252: Session handling in name bulk editor not correct
I observed a similar incorrect session handling in other situations already. However, I never inspected it so deeply. Andreas Müller
12:20 PM bug #10252: Session handling in name bulk editor not correct
Interesting is that it does show the correct java object when searching via uuid, but only when opening a new name bu... Andreas Müller
11:57 AM bug #10252 (New): Session handling in name bulk editor not correct
What I did:
I updated the name ×Euphrasia arctica × stricta. In an intermediate state it became ×Euphrasia arctica...
Andreas Müller
12:43 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
Very interesting is observation in #10252 which seems to be related. Andreas Müller
12:43 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
AM 2023-01-28:
Schon wieder, nach Nacht, NameBulkeditor war noch offen, neue Anfrage
~~~
last remote service :...
Andreas Müller
12:41 PM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
AM 2023-01-27:
Cache Status, lange offen, aber kurz vorher genutzt, kurz vorher alle Fenster geschlossen und RefBu...
Andreas Müller
11:08 AM bug #10193: OutOfMemory exception when exporting mexico flora
The problem is also relevant for E+M. Andreas Müller
09:17 AM bug #10251 (New): Feature tree label is empty representation after adding a new term
mail WB:
ich habe unter Window – Terms – Vocabulary – Feature – User defined feature
den Term Morphology hinzuge...
Katja Luther

02/26/2023

06:18 PM bug #8167 (Closed): Permission denied for Submitter when adding section to newly created journal
Wolf-Henning Kusber
05:47 PM task #7811 (In Progress): Import higher classifications
Reopened for WoRMS and other classifications. Wolf-Henning Kusber
05:36 PM feature request #9685 (Closed): add separator between rule applied and code edition
Wolf-Henning Kusber
05:33 PM task #8209 (Closed): use ellypsed references for all reference comboboxes
Wolf-Henning Kusber

02/24/2023

12:26 PM bug #8953: Focus not correctly evaluated for details view when switching between names
Maybe related:
ERS: 2022-08
etwas lästig ist es, dass die Ansteuerung eines Taxons im Freitextbereich ziemlich ...
Andreas Müller
12:21 PM task #10208: only use cacher for static terms
However, we need to be careful as the cacher uses ehcache. It must not have a timeout as in case of the terms cached ... Andreas Müller
11:27 AM Revision 1aa301ee (cdm-vaadin): ref #10072 update log4j.properties to log4j2.xml in launchers in vaadin (cont.)
Andreas Müller
11:25 AM Revision 1284bc38 (cdmlib): ref #10072 update log4j.properties to log4j2.xml in launchers in cdmlib (cont.)
Andreas Müller

02/23/2023

03:57 PM Revision 9a9a685d (cdm-vaadin): ref #10072 update log4j.properties to log4j2.xml in launchers in vaadin
Andreas Müller
03:56 PM Revision 1d51c31d (cdmlib): ref #10072 update log4j.properties to log4j2.xml in launchers in cdmlib
Andreas Müller

02/22/2023

11:36 PM Revision 7219b660 (cdmlib): ref #10222: improved typified name logging
Andreas Müller
03:52 PM Revision b6dd5ae1 (cdmlib): ref #10222: fix stackTrace handling
Andreas Müller
03:30 PM Revision bd5b1714 (cdmlib): ref #10222: fix NPE in loadSource
Andreas Müller
03:30 PM Revision 403f70b3 (cdmlib): ref #10222: fix NPE in addMessages
Andreas Müller
03:05 PM Revision 5b07eb59 (cdmlib): add getter for Label in SourceDTO
Andreas Müller
03:00 PM Revision fd1c468b (cdmlib): minor
Andreas Müller
02:45 PM Revision f9806fbe (cdmlib): ref #10222: fix NPE for handlingTypification
Andreas Müller
11:38 AM feature request #10250 (New): Bibliography dataportal page
WGB:
Up to now, the bibliography (i.e. a list of the publications cited in the database) is either put in manually...
Andreas Müller
11:16 AM bug #6641: On single tab pages the bibliography is not shown on the bottom
If still open this could be implemented in current milestone. Andreas Müller
11:09 AM bug #6650: Hide empty Bibliography block
If this is still an open issue we maybe can solve it in the current performance milestone Andreas Müller
10:56 AM bug #597: DefinedTerm problem solved
Ben 2009-02-13:
> Yes, I think you are right that 1) and 2) are more or less
> contradiction or need an extreme ...
Andreas Müller
10:18 AM bug #7493: Review all references to SynonymRelationshipTypes and adapt code if needed
we may implement this together with the current performance refactoring. However, we need to check if the synonym typ... Andreas Müller
09:20 AM Revision 20e99831 (cdm-dataportal): ref #10222: revert changes
Katja Luther

02/21/2023

04:01 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
Andreas Müller wrote:
> * ~~name relationships~~ => implemented -> ruleConsidered is missing
added
Andreas Müller
03:59 PM Revision 5474bb7b (cdmlib): ref #10222: add longCitation formatting for sources
Andreas Müller
03:54 PM Revision 4094ae07 (cdmlib): ref #10222: add ruleConsidered to name relationships
Andreas Müller
10:42 AM Revision 7f55b129 (cdmlib): cleanup
Andreas Müller
10:42 AM Revision dac0d98a (cdmlib): Cleanup SourceDTO
Andreas Müller
10:04 AM Revision ac497e38 (cdm-dataportal): ref #10222: fix display of common names
Katja Luther

02/20/2023

02:42 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
Katja Luther wrote in #note-36:
> The order of the (homotypic?) synonyms is not correct, for example for Aizoon hisp...
Andreas Müller
01:52 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
Katja Luther wrote in #note-38:
> Andreas Müller wrote in #note-37:
> > Katja Luther wrote in #note-35:
> > > To c...
Andreas Müller
01:28 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
Andreas Müller wrote in #note-37:
> Katja Luther wrote in #note-35:
> > To create the same html code like before it...
Katja Luther
01:12 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
Katja Luther wrote in #note-35:
> To create the same html code like before it is necessary to provide the feature uu...
Andreas Müller
12:52 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
The order of the (homotypic?) synonyms is not correct, for example for Aizoon hispanicum L.(Cyprus) the order of the ... Katja Luther
12:42 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
To create the same html code like before it is necessary to provide the feature uuid for the descriptions. Katja Luther
02:36 PM Revision a53df1c6 (cdm-dataportal): ref #10222: fix temporal data
Katja Luther
02:14 PM Revision fe8fde2a (cdm-dataportal): ref #10222: fix heterotypic synonyms
Katja Luther
10:50 AM Revision 83e1c4cb (cdm-dataportal): revert changes in common to fix registration tests
Katja Luther
 

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