Activity
From 01/03/2023 to 02/01/2023
02/01/2023
- 10:47 PM task #10242 (Closed): Import Sileneae
- Taxon.xlsx:
Akzeptierte Taxa mit Link zu Namen und Parents (link to AcceptedTaxon_ID)
NomTax.xlsx:
Synonyme ... - 10:29 PM task #10232 (Closed): Import Finnish common names
- I guess this is fully implemented. The open issues that common names are not found in (advanced) search does not seem...
- 10:26 PM task #10236 (Discussed): Import data from caucasus DB to E+M
- 09:43 PM feature request #10241 (In Progress): Handle modifiers and modifying text for quantitative data and description elements formatting
- Implemented for QuantitativeDataFormatter. Still need to check other formatters like DefaltQuantitativeDescriptionBui...
- 07:13 PM feature request #10241 (Closed): Handle modifiers and modifying text for quantitative data and description elements formatting
- Currently modifying text and modifyer for description elements as well as modifiers for StatisticalMeasurementValue a...
- 08:05 PM Revision ca482b9d (cdmlib): ref #10232 add handling for quantitative and categorical data to DescriptionElementFormatter
- 07:57 PM Revision 3d345f97 (cdmlib): handle potential NPE in MicroFormatCategoricalDescriptionBuilder
- 07:56 PM Revision 5c790b9f (cdmlib): ref #10232 add modifier handling to QuantitativeDataFormatter and DesciptionElementFormatterBase
- 07:55 PM Revision 5d83c972 (cdmlib): ref #10232 fix issue in common name export
- 05:38 PM feature request #10240 (New): Improve DOI formatting for references
- AM:
im Kontext der Flora von Griechenland kommt gerade eine Frage zur Formatierung von DOI Angaben bei Referenzen ...
01/31/2023
- 06:53 PM task #10239: Caucasus databases and portals available
- Meeting 2023-01-31:
* Maryam will start entering data from conspectus with E+M areas to complete the taxonomic bac... - 03:29 PM Revision 2c60f44a (taxeditor): add urlString to error message
- 02:09 PM Revision 03807dcf (taxeditor): use swtbot stable release instead of snapshot
01/30/2023
- 05:52 PM task #10239: Caucasus databases and portals available
- UUIDs:
ERS:
spricht was dagegen, die uuids für Namen gleich zu halten? Da erwarte ich kaum Abweichungen, oder? ... - 05:44 PM task #10239: Caucasus databases and portals available
- sec-refs:
ERS:
wahrscheinlich gibt es nicht viele Daten, aber wenn, sollten wir sie mit exportieren. Es ist noc... - 05:36 PM task #10239: Caucasus databases and portals available
- WFO-IDs:
NaK:
wäre auf jeden Fall sinnvoll, und das Institut in Baku ist auch Teil des WFO Konsortiums.
Wenn wir d... - 05:33 PM task #10239: Caucasus databases and portals available
- Kew/ILDIS:
ERS:
diese haben ja gar keine Verbreitungsangaben für die Südkaukasusländer, sondern nur für TCS. Si... - 05:27 PM task #10239: Caucasus databases and portals available
- AM:
Verstehe ich es richtig, dass dann im Armenien Slice wirklich nur Taxa landen sollen, die in Armenien vorkomme... - 05:26 PM task #10239: Caucasus databases and portals available
- NaK:
anbei sind nochmal die drei Proposals. Ich glaube, dass Anton sie kannte, Andreas und Katja aber vermutlich n... - 05:22 PM task #10239 (New): Caucasus databases and portals available
- This is kind of a master ticket for issues related to the 3 caucasus portals and the caucasus project.
Also use the ... - 05:12 PM feature request #5807: implement sub-distribution area inclusion in TaxonService.findTaxaAndNamesByFullText()
- Check if this is still an open issue
- 04:59 PM feature request #10238 (New): Show accepted name for name type designations with types being synonyms
- NaK:
wir hatten gestern mit einigen Autoren der Caryophyllaceae-Checkliste eine Format-Frage diskutiert, und ich w... - 04:03 PM task #10237 (New): Remove generation of SLD files on file system
- Franck:
By looking at the code, I noticed that its biggest drawback is that it generates the SLD files and images ... - 03:57 PM Revision dfe955e1 (cdmlib): ref #9664 fix updateNomenclaturalCache() and updateCollectorCache() in Person
- 03:08 PM Revision 077baea5 (cdmlib): ref #10232 finalize CommonNameExcelImport and some cleanup
- 02:39 PM task #10232 (Resolved): Import Finnish common names
- We still need to run the final import for the Swedish names. Afterwards, the ticket can be closed.
- 12:20 PM task #10232: Import Finnish common names
- ERS:
aus meiner Sicht kann es losgehen, scheint alles geklärt. Die wenigen eventuellen Homonyme kann ich sicher na... - 10:04 AM Revision 051d16ee (cdmlib-apps): ref #10232 add Finnish common name activator (cont.)
01/27/2023
- 06:19 PM task #10232: Import Finnish common names
- Andreas Müller wrote in #note-5:
> AM:
>
> ich habe jetzt den Commons Name Import für die Finnischen Daten weitge... - 04:56 PM task #10232: Import Finnish common names
- AM:
ich habe jetzt den Commons Name Import für die Finnischen Daten weitgehend fertig.
Das Hauptproblem ist dabei... - 08:42 AM Revision b675f9d4 (cdmlib): fix https in EditGeoServiceTest
- 08:41 AM Revision 33078d01 (cdmlib): ref #10232 first implementation for E+M finnish common name import
01/26/2023
- 10:37 AM Revision 68f017cc (taxeditor): ref # 10221: code cleaning - move remote server view to store
- 10:36 AM Revision 30ab88dd (taxeditor): ref #10221: code cleaning
01/25/2023
- 06:49 PM feature request #9197 (Discussed): Handle caucasus conspectus data in E+M and caucasus portal
- 06:45 PM feature request #9197 (In Progress): Handle caucasus conspectus data in E+M and caucasus portal
- 06:49 PM task #10236 (In Progress): Import data from caucasus DB to E+M
- 06:48 PM task #10236 (Discussed): Import data from caucasus DB to E+M
- for details see #7921
Maybe not needed. Wait for final decision. - 02:58 PM Revision f3367749 (taxeditor): ref #10221: adaptions in CdmServerInfo
- 02:56 PM Revision 2b54bf6d (taxeditor): ref #10221: fix create new remote server entry
- 02:31 PM Revision e98e917e (taxeditor): ref 10221: adapt view
- 01:45 PM Revision ed5b62c9 (taxeditor): ref 10221: abstract class for remote server handler
- 01:39 PM feature request #10221 (In Progress): Add form to edit the json file with cdmserver info
- Added new view and edit and delete handlers, the new creation still does not work.
- 01:38 PM Revision ab0d5feb (taxeditor): ref #10221: Add view and wizard to edit remote servers
- 12:37 PM bug #10234: MetaData of images coming from the new image server are not shown
- Dominik Roepert wrote in #note-5:
> iptc
> Headline
> Caption
> Country/PrimaryLocationName
> ProvinceState
> ... - 09:13 AM bug #10234: MetaData of images coming from the new image server are not shown
- iptc
Headline
Caption
Country/PrimaryLocationName
ProvinceState
City
Sublocation
DateCreated
Credit
CopyrightNotice
...
01/24/2023
- 11:28 PM Revision d5797bc3 (cdmlib-apps): ref #10232 add Finnish common name activator
- 11:28 PM Revision 3af4f365 (cdmlib-apps): cleanup
- 03:19 PM bug #10234 (In Progress): MetaData of images coming from the new image server are not shown
- 01:20 PM bug #10234 (Closed): MetaData of images coming from the new image server are not shown
- mail DR:
Guten Morgen,
könnten wir uns zum Metadatenworkflow nochmal besprechen? Die Bilder werden jetzt über d... - 10:41 AM bug #6500: Remaining issues for volume formating in generic references
- The classes to be used are ReferenceDefaultCacheStrategy and ReferenceDefaultCacheStrategyTest
01/23/2023
- 10:05 PM feature request #10233 (New): Allow "for grouping only" structures for terms
- Probably we need these for both, vocabularies and lists/trees/graphs.
As an example: structures which are more mod... - 09:15 PM feature request #10133: Improve ontology state vocabularies
- entire plant-habit and -ecological adaptiations should be fixed now
- 08:59 PM task #10224 (Closed): Import Kew Nyctaginaceae data to Caryophyllales
- 04:29 PM task #10224 (Resolved): Import Kew Nyctaginaceae data to Caryophyllales
- Applied in changeset commit:cdmlib-apps|7a76c575543eac54588c7acfb7f36ea27129a2ce.
- 05:40 PM Revision 5e328b3f (cdmlib-apps): ref #10224 final to KewImport for Nyctaginaceae import (cont.)
- 04:29 PM Revision 5a432167 (cdmlib-apps): cleanup
- 04:29 PM Revision 7a76c575 (cdmlib-apps): fix #10224 final to KewImport for Nyctaginaceae import
- 03:48 PM task #10232 (Closed): Import Finnish common names
- File to be found at:
ERS:
ja genau, in erster Linie geht es bei dieser Liste nur um den Common Name Import, da ... - 11:44 AM bug #10230 (New): Nomenclatural reference selection dialogue should behave like the other reference selection dialogues
- mail WB:
ich bin mal wieder in der Warteschleife, hier im Details View, Nom. Source, Reference.
bis zu 2 Minu...
01/21/2023
- 01:07 AM Revision 4ffefb82 (cdmlib): ref #10222 annotation ids and cleanup
- 12:37 AM Revision 8b6c9ee0 (cdmlib): ref #10222 change labels for TaxonBaseDto (fix)
- 12:20 AM Revision ed8f7a1c (cdmlib): minor
- 12:20 AM Revision fb97750d (cdmlib): ref #10222 add supplemental data (cont.) + change labels for TaxonBaseDto
01/20/2023
- 11:11 PM Revision b53e0283 (cdmlib): ref #10222 add supplemental data
- 12:11 PM Revision 7c921120 (cdm-dataportal): adapt taxon node status text
- 11:10 AM Revision ae0f24f2 (cdmlib): add method to get uuid and abbrev titlecache for a set of uuids
01/19/2023
- 02:20 PM task #10205 (Resolved): Update GBIF import to modern json library.
- The jsonlib library and depending libraries are removed again.
This should work now, please review. - 01:41 PM task #10205 (In Progress): Update GBIF import to modern json library.
- The gbif import on cdmlibrary side is adapted.
- 02:18 PM Revision 21527fe6 (taxeditor): ref #10205: remove jsonlib library again from MANIFEST.MF
- 02:00 PM Revision def0d632 (cdmlib): ref #10205: fixing parseOriginalDataSetUri
- 01:35 PM Revision 4a24714d (cdmlib): ref #10205: using Jackson library for GBIF import
- 01:11 AM Revision 8eeb988a (cdmlib): ref #10222 add tagged text for typification (cont.)
- 01:08 AM Revision 2a70744d (cdmlib): ref #10222 add tagged text for synonyms
- 01:08 AM Revision 2de51344 (cdmlib): cleanup
- 01:07 AM Revision ba3f97f8 (cdmlib): ref #10222 move TypedLabel to model (fix NPE when using label only)
- 12:33 AM Revision ed1bc91c (cdm-vaadin): cleanup TypedEntityReference constructors in vaadin and general cleanup
- 12:32 AM Revision cbcfbd6b (cdmlib): cleanup TypedEntityReference constructors in cdmlib
- 12:00 AM Revision 29532667 (cdmlib): ref #10222 add tagged text for typification
01/18/2023
- 11:51 PM Revision 65dea50f (cdmlib): ref #10222 enable message handling and add message for type designation formatting exceptions
- 11:33 PM Revision 7142f595 (cdmlib): ref #10222 rename ContainerDto.collection to items
- 11:30 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
- taxonNode agent relationships should be implemented now. Please review. Do we need more fields (I tried to use only t...
- 04:29 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
- Some tetst data available at: https://test.e-taxonomy.eu/cdmserver/cyprus/portal/taxon/a4637006-8ea3-443b-b4e6-b6f668...
- 02:25 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
- > * specimen: could we reuse or reorganize the already existing derivedUnit/fieldunit dtos? They are already implemen...
- 02:21 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
- > * taxonName: should everything be handled in typedLabel or in own DTO?
> * if we have an own dto, we can add ran... - 11:28 PM Revision 03573c63 (cdmlib): ref #10222 add agentlink to taxonNodeAgentRelDto
- 11:18 PM Revision a1fd62a1 (cdmlib): ref #10222 use taggedText for taxon label for now and cleanup
- 10:12 PM Revision 1ba32c3e (cdmlib): ref #10222 move TypedLabel to model (fix text data label handling) and cleanup
- 10:07 PM Revision 5f2cda93 (cdmlib): ref #10222 first implementation for typification in TaxonPageDto
- 10:01 PM Revision 40499c6d (cdmlib): ref #10222 taxonnode agent relations to TaxonNodeDTO (fix) and doc
- 10:00 PM Revision d17eff4c (cdmlib): ref #10222 move TypedLabel to model
- 09:32 PM Revision f4ebb25c (cdmlib): ref #10222 taxonnode agent relations to TaxonNodeDTO and doc
- 02:54 PM bug #10228: Fields for elevation and date should always be expanded
- This should be fixed, please review.
- 02:53 PM bug #10228 (Resolved): Fields for elevation and date should always be expanded
- Applied in changeset commit:taxeditor|be9ad72658f97d4481f4ec6311bfe65ba1551534.
- 02:40 PM Revision be9ad726 (taxeditor): fix #10228: open fields for elevation and date in specimen dialog
- 02:15 PM Revision bdf714a1 (cdmlib): ref #10222 add status and statusNote to TaxonNodeDTO (fix)
- 11:49 AM Revision 88a09909 (cdmlib): ref #10222 add status and statusNote to TaxonNodeDTO
01/17/2023
- 07:09 PM Revision 390cc644 (cdmlib): ref #10222 first incomplete implementation of taxonPageDto
- 03:02 PM bug #10228 (In Progress): Fields for elevation and date should always be expanded
- mail NaK:
noch eine gaanz große Bitte für den nächsten Release, die hoffentlich leicht zu machen ist
Es wäre to... - 02:46 PM Revision e41b3686 (cdmlib): ref #10222 first incomplete implementation of synonymy (cont.)
- 12:26 AM Revision 173ccb3f (cdmlib-apps): ref #10049, ref #10050, ref #10184 add area geo service mapping for MCL
01/16/2023
- 11:16 PM task #10227 (New): Implement bioschema.org on taxon pages
- see https://bioschemas.org/profiles/
and https://bioschemas.org/profiles/Taxon/0.6-RELEASE for better findability
... - 11:10 PM Revision 1eb2f086 (cdmlib): ref #10222 first incomplete implementation of synonymy (cont.)
- 10:52 PM task #10226 (New): Upgrade to Spring 6.x
- copied from #10216 :
* spring 6 links: see also https://www.heise.de/hintergrund/Spring-Framework-6-verarbeitet-N... - 12:07 PM Revision 3c582c09 (taxeditor): add only exception, not exception and message
- 11:47 AM Revision 6c41cae9 (cdmlib): do not add exceptions for name deletion a second time
01/15/2023
- 11:39 PM Revision 49e6e48d (cdmlib): cleanup
- 11:39 PM Revision a2fa0deb (cdmlib): ref #10222 first incomplete implementation of synonymy
- 09:58 PM Revision 23f524d6 (cdmlib-apps): ref #10224 implement Kew Nyctaginaceae import
- 09:56 PM Revision 081ddf46 (cdmlib-apps): rename Kew imports
01/13/2023
- 02:08 PM Revision 6b925e3f (taxeditor): fix sorting in termcombo
- 12:29 PM task #9940: Handle type category formatting in compact typification strings
- By the way, the above notes from NoK are also handled in #9941 which is partly a duplicate for this ticket.
- 12:28 PM task #9940: Handle type category formatting in compact typification strings
- AM
vielen Dank für die Anmerkungen. Ich habe das auch so in Erinnerung und wir werden versuchen es so zu formatier... - 12:24 PM task #9940: Handle type category formatting in compact typification strings
- NoK:
all,
I strongly prefer the style with the main typification put in front because this is the least redund... - 11:00 AM feature request #10133: Improve ontology state vocabularies
- AM:
hier mal die Zusammenfassung, welche Terme in „regions“ bereits verwendet werden.
• abaxial face (1x)
• ap... - 10:18 AM bug #10225: MultipleRepresentationException when moving synonym in homotypic group
- Maybe it is the same as #8591, but in this ticket the exception always appears after setting a synonym as basionym.
- 10:16 AM bug #10225 (New): MultipleRepresentationException when moving synonym in homotypic group
- mail NaK:
Hi,
beim Taxon Mammillaria karwinskiana gibt es zwei Synonyme M. senckei, die wollte ich zu einer ho...
01/12/2023
- 04:00 PM task #10224 (Closed): Import Kew Nyctaginaceae data to Caryophyllales
- 01:14 PM bug #10197: Show empty page for delay while updating
- Release 5.36 is a portal performance sprint, so I move this ticket to 5.37
- 12:49 PM task #10220 (Closed): Remove SpecimenCdmExcelImport and EndnoteImport in TaxEditor
- Cleanup finished, so we can close this ticket
- 12:48 PM Revision f16c3c79 (taxeditor): ref #10220: cleanup AppModelid
- 12:45 PM Revision ab261bc7 (taxeditor): ref #10220: cleanup bundle.properties continue
- 12:43 PM Revision 3c8a6a95 (taxeditor): ref #10220: cleanup bundle.properties
- 11:36 AM feature request #1742: Adapt the ZooNameDefaultCacheStrategy
- Also check if the order of ex-authors is correct. It is the the opposite to botanical names
- 11:29 AM bug #2121: Series part is not reflected in cache strategy
- is this still open?
- 11:19 AM bug #7879: Book CacheStrategy does not show 'place published', 'publisher', 'editor'
- maybe a duplicate for #10245
01/11/2023
- 11:11 PM Revision aa222bf3 (cdmlib): ref #10222 handle count in Container
- 11:06 PM Revision 2ea43c9e (cdmlib): cleanup
- 11:04 PM Revision a3841565 (cdmlib): ref #10222 first version of a taxon page dto framework (first TextData)
- 01:31 PM Revision 81321e9d (cdmlib): test
- 01:19 PM bug #10223 (New): References for lectotypes should have short references, not full authorship
- NoK:
bis vor Kurzem hatten wir für die Lectotyp-Referenz im Portal die Konvention, dass ein Kurzverweis in Klammer... - 01:10 PM feature request #10206 (In Progress): Add publish flag to description base
- 12:15 PM Revision e3193da1 (cdmlib): minor
- 12:00 PM Revision 3d586a45 (cdmlib-apps): adapt pesi to new getHqlResult signature
- 07:51 AM Revision ae17a4ad (cdmlib): ref #10222 first version of a taxon page dto framework (cont.)
01/10/2023
- 11:44 PM Revision 24921917 (cdmlib): ref #10222 first version of a taxon page dto framework (cont.)
- 11:03 PM feature request #10206: Add publish flag to description base
- WGB:
Hatten wir eigentlich schon die Sache mit den Factual Datasets zur Publikation diskutiert?
Wir haben ja die... - 11:02 PM feature request #10206: Add publish flag to description base
- First we need to check how easy it is to use the enumset for query filtering. If it is easy we may use the enumset, o...
- 12:48 PM Revision 922e377f (taxeditor): ref 10220: cleanup code after removing specimenExcelImport and endnoteImport
01/09/2023
- 07:42 PM task #10222 (In Progress): Use DTOs for portal taxon page - first implementation for E+M
- 07:31 PM task #10222 (Resolved): Use DTOs for portal taxon page - first implementation for E+M
- ... to improve performance and simplify dataportal rendering. If possible formatting should take place server side.
... - 07:36 PM Revision f598b089 (cdmlib): ref #10222 first version of a taxon page dto framework
- 06:15 PM Revision 26bb0b57 (cdmlib): cleanup and javadoc
- 11:20 AM bug #10111: Data loss e.g. when entering type information
- NaK:
das ist mir auch ein paar Mal passiert, aber so sporadisch, dass ich dachte, ich hätte nicht gespeichert. Ich... - 10:29 AM feature request #10203: Show specimen sources in publications
- As we will work on portal taxon pages in 5.36 this might be an issue that can be solved in 5.36. If not we will move ...
- 10:25 AM bug #10068 (Closed): Changing focus to accepted taxon does not work
- This works now.
- 10:06 AM feature request #10221 (Closed): Add form to edit the json file with cdmserver info
- For users it is difficult to find and edit the json file to add a new cdm server. Therefore we should have a form in ...
01/07/2023
01/06/2023
- 09:40 PM bug #10111: Data loss e.g. when entering type information
- AM:
auch das Ticket #10111 sollte jetzt final gereviewed werden nach dem das Release jetzt draußen ist.
In dies... - 09:30 PM bug #10053 (Resolved): Problems with saving of secundum references
- AM to Maryam:
... Katja and I can’t reproduce. Could you please check next time you work with the TaxEditor if it ... - 09:16 PM bug #10054: Changes on secundum reference are lost after changing status to basionym
- Close ticket fully if Maryam does not report again until 4/23
- 09:16 PM bug #10054 (Resolved): Changes on secundum reference are lost after changing status to basionym
- AM to Maryam:
...
As Katja and I can’t reproduce this bug anymore we would like to ask you if you can still repro... - 08:55 PM bug #8953: Focus not correctly evaluated for details view when switching between names
- Close in 4/23 if not reported again.
- 08:54 PM bug #8953: Focus not correctly evaluated for details view when switching between names
- AM:
ihr hattet das Problem in Ticket #8953 vor 2 Jahren beschrieben. Wir haben in diesem Bereich jetzt einiges ver... - 08:49 PM bug #10191 (Closed): Error message on taxon specimen page for non-atomized specimens
- This looks fine also on production so we close the ticket.
The data itself should still be cleaned up. - 08:46 PM bug #8653 (Closed): NullPointerException (NPE) when focusing Taxon Name Editor
- This issue was obiously not related to the import but to code changes related to preferences. The fix looks reasonabl...
- 08:02 PM Revision 2cb7268c (taxeditor): ref #6343, ref 6794 adapt taxeditor to removal of non-typified TermVocabulary.NewInstance method
- 08:02 PM Revision 9ec83bdc (taxeditor): cleanup
- 07:11 PM Revision d7b3d794 (cdmlib): ref #6343, ref 6794 fix creation of OrderedTermVocabulary in imports
- 07:10 PM bug #8270: TermDTOs with an orderIndex are ordered in unordered term vocabularies
- Is this still open?
- 06:19 PM Revision 816eb1d7 (cdmlib-apps): update poms to 5.36
- 06:19 PM Revision c9a18b1c (cdmlib-apps): cleanup
- 06:02 PM Revision cf70a387 (cdmlib): ref #10201 additional update script for synonym type
- 06:01 PM Revision 40e58fe3 (cdmlib): minor
- 05:01 PM task #10220 (In Progress): Remove SpecimenCdmExcelImport and EndnoteImport in TaxEditor
- classes and menu entries are removed, still needs some clean up (strings, comments etc)
- 02:41 PM task #10220 (Closed): Remove SpecimenCdmExcelImport and EndnoteImport in TaxEditor
- mail AM:
~~~
wenn ich es richtig sehe, verwendet der Specimen CDM Excel Import noch nicht die Remoting Implementi... - 02:55 PM Revision a3072f4e (taxeditor): ref #10220: remove unused import code
- 11:58 AM Revision 93a7e8c3 (taxeditor): remove menu entries for SpecimenExcelImport and Endnote import
- 11:12 AM Revision 65c5c491 (cdmlib): ref #10072 remove file-appender from cdmlib-test log4j2-test
- 10:24 AM Revision 51ed8da5 (taxeditor): continue cleanup checklist files
- 10:19 AM Revision 9fb100fb (taxeditor): remove unused class ChecklistEditorInput
01/05/2023
- 09:15 PM task #10205: Update GBIF import to modern json library.
- please also remove the .ignore entries
- 09:03 PM Revision 356e00f7 (taxeditor): javadoc
- 09:03 PM Revision 7b40eb6e (taxeditor): ref #10204, ref #10205 add commons-beanutils and json-lib to .gitignore in taxeditor
- 08:57 PM Revision d197381e (taxeditor): ref #10055 upgrade postgresql to 42.5.1 in taxeditor
- 08:49 PM Revision 980cb5f2 (cdmlib): ref #10055 upgrade postgresql to 42.5.1 in cdmlib
- 08:16 PM feature request #6794 (In Progress): Improve term structure
- 08:13 PM feature request #6794 (Duplicate): Improve term structure
- 06:33 PM task #10216 (In Progress): Upgrade to Spring 5.x
- 05:52 PM bug #6407: Upgrade maven compiler plugin to latest version
I tried to handle aspectj with aspectj-maven-plugin (and remove the ant-run-plugin) in cdmlib-model
https://www.moj...- 05:49 PM Revision ae2585a1 (cdm-server): Merge branch 'release/5.35.0' into develop
- 05:49 PM Revision 45b71a61 (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 05:48 PM Revision 6b6b577d (cdm-server): updating poms for branch'release/5.35.0' with non-snapshot versions
- 05:48 PM Revision 60fe280b (cdm-webapp): Merge branch 'release/5.35.0' into develop
- 05:48 PM Revision 70f70b82 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 05:47 PM Revision acdd8133 (cdm-webapp): updating poms for branch'release/5.35.0' with non-snapshot versions
- 05:47 PM Revision 788cfa8e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.35.0
- 05:35 PM Revision bc57f8df (cdm-vaadin): Merge branch 'release/5.35.0' into develop
- 05:35 PM Revision f585e16a (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 05:31 PM Revision 579728bb (cdm-vaadin): updating poms for branch'release/5.35.0' with non-snapshot versions
- 05:31 PM Revision d8d478e1 (cdm-vaadin): jenkins bumping cdmlib.version to 5.35.0
- 05:31 PM Revision e585c18c (taxeditor): Merge branch 'release/5.35.0' into develop
- 05:31 PM Revision aa7460a8 (taxeditor): Merge branch 'release/5.35.0'
- 05:30 PM Revision 8f5ebfe6 (cdm-dataportal): Merge branch 'release/5.35.0' into develop
- 05:30 PM Revision 39bc3a67 (cdm-dataportal): updating poms for branch'release/5.35.0' with non-snapshot versions
- 05:30 PM Revision 12a3b851 (cdm-dataportal): release-preparation: production level css
- 05:29 PM Revision f51ce131 (cdmlib): Updating develop poms back to pre merge state
- 05:29 PM Revision 12833cf2 (cdmlib): Merge branch 'master' into develop
- 05:29 PM Revision fe942f41 (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 05:29 PM Revision 2c4e8753 (cdmlib): Merge branch 'release/5.35.0'
- 05:22 PM task #6981: Migrate to Java 11
- This is maybe blocked by upgrading to maven-compiler-plugin 3.x first which has problems with aspectj handling.
- 05:16 PM Revision bd858eb5 (cdmlib): updating poms for branch'release/5.35.0' with non-snapshot versions
- 05:06 PM bug #8590 (Duplicate): Details view does not show data of new synonym
- This is a duplicate for #10138 and has been fied in current milestone.
- 04:57 PM bug #10068 (Resolved): Changing focus to accepted taxon does not work
- fixed with commit:a5a95b645c5976. Please review. It also solves the issue that when opening the Taxon Editor the focu...
- 03:10 PM bug #10068 (New): Changing focus to accepted taxon does not work
- ok,then we keep it in 5.36
- 02:54 PM bug #10068: Changing focus to accepted taxon does not work
- Katja Luther wrote in #note-2:
> This issue seems to be solved by #10138 and/or #10186. We can remove the version or... - 02:46 PM bug #10068 (Feedback): Changing focus to accepted taxon does not work
- This issue seems to be solved by #10138 and/or #10186. We can remove the version or set it to the current milestone (...
- 04:46 PM Revision a5a95b64 (taxeditor): ref #10068 fix start focus in Taxon Editor
- 04:39 PM Revision 1e60a1f3 (taxeditor): cleanup
- 03:22 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
- This is still an issue when changing the designation status to holotype, adding a specimen solves the problem. So we ...
- 03:21 PM bug #8953 (Resolved): Focus not correctly evaluated for details view when switching between names
- We will ask users to test after release.
- 02:41 PM bug #8953 (Feedback): Focus not correctly evaluated for details view when switching between names
- I think this problem is fixed, maybe related to #10138 and #10186. We can remove the version or set it to the current...
- 03:19 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
- Now it should reload after 20min (if idle) or 1h (if not idle). Maybe you can test a last time. But it should work as...
- 01:52 PM bug #10214 (Resolved): Cache configuration for term cache not correctly initialized in taxeditor
- Applied in changeset commit:taxeditor|af15e2e37989f818b9098b604242a02adf295818.
- 12:44 PM bug #10214 (Feedback): Cache configuration for term cache not correctly initialized in taxeditor
- Ahh, the reason is that CdmServiceCachingProxy overrides the CdmPermanentCache configuration
- 12:44 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
- Katja Luther wrote in #note-13:
> Andreas Müller wrote in #note-10:
> > This should be fixed. Please review.
> >
... - 09:50 AM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
- Andreas Müller wrote in #note-10:
> This should be fixed. Please review.
>
> The most important result should be,... - 03:17 PM bug #10186 (Closed): Problems with session handling in taxeditor
- Further issues can be handled in the more detailed tickets.
- 03:12 PM bug #10186 (Resolved): Problems with session handling in taxeditor
- Should we close this ticket and open a new one if we do further research on taxeditor sessions? I think there are a c...
- 02:58 PM bug #10186: Problems with session handling in taxeditor
- Andreas Müller wrote in #note-10:
> Katja Luther wrote in #note-5:
> > SetSelection in setFocus of TaxonNameEditorE4 ... - 02:57 PM bug #10219: Setting the focus to an already selected entity should not refresh the details view
- Similar things happen with the SupplementalDataView.
- 02:48 PM bug #10219: Setting the focus to an already selected entity should not refresh the details view
- Actually if the name editor looses the focus and gets it back the details view still shows the details of the selecte...
- 02:47 PM bug #10219 (New): Setting the focus to an already selected entity should not refresh the details view
- 02:51 PM bug #10138 (Closed): Details view is not updated after freetext change
- 02:17 PM bug #10138 (Feedback): Details view is not updated after freetext change
- Katja Luther wrote in #note-26:
> This is like it was before, I think there is already a ticket about it. (for examp... - 01:06 PM bug #10138 (Resolved): Details view is not updated after freetext change
- 12:20 PM bug #10138: Details view is not updated after freetext change
- Andreas Müller wrote in #note-25:
> Andreas Müller wrote in #note-24:
> > Katja Luther wrote in #note-22:
> > > I jus... - 12:06 PM bug #10138: Details view is not updated after freetext change
- Andreas Müller wrote in #note-24:
> Katja Luther wrote in #note-22:
> > I just tried out another implementation: no... - 11:11 AM bug #10138: Details view is not updated after freetext change
- Katja Luther wrote in #note-22:
> I just tried out another implementation: now the detailsviewer just remember that ... - 11:10 AM bug #10138 (Feedback): Details view is not updated after freetext change
- Katja Luther wrote in #note-21:
> The new solution disables the details view after editing the name in name editor, ... - 10:54 AM bug #10138: Details view is not updated after freetext change
- I just tried out another implementation: now the detailsviewer just remember that there are changes in Name Editor an...
- 09:33 AM bug #10138 (Resolved): Details view is not updated after freetext change
- The new solution disables the details view after editing the name in name editor, editing the other names/taxon/synon...
- 12:58 AM bug #10138 (Feedback): Details view is not updated after freetext change
- This needs to be reverted or adapted. Currently the detail view very often refreshes. This happens also in many cases...
- 02:50 PM Revision 30c6d54a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.35.0-SNAPSHOT
- 02:50 PM Revision 76f03c68 (cdm-webapp): updating poms for 5.36.0-SNAPSHOT development
- 02:50 PM Revision d9fa7f17 (cdm-webapp): updating poms for 5.35.0 branch with snapshot versions
- 02:49 PM Revision 3b4e277a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.36.0-SNAPSHOT
- 02:49 PM Revision e11f2e25 (taxeditor): Updated version in pom / project files to taxeditor version : 5.36.0-SNAPSHOT and cdmlib version : 5.36.0-SNAPSHOT
- 02:49 PM Revision ebbf2f6e (taxeditor): Updated version in pom / project files to taxeditor version : 5.35.0 and cdmlib version : 5.35.0
- 02:48 PM Revision 1a06921d (cdm-dataportal): updating poms for 5.36.0-SNAPSHOT development
- 02:46 PM Revision 2a46edab (cdm-vaadin): jenkins bumping cdmlib.version to 5.35.0-SNAPSHOT
- 02:45 PM Revision 4a634289 (cdm-vaadin): updating poms for 5.36.0-SNAPSHOT development
- 02:45 PM Revision 5d568fe8 (cdm-vaadin): updating poms for 5.35.0 branch with snapshot versions
- 02:45 PM Revision 3f96c927 (cdm-vaadin): jenkins bumping cdmlib.version to 5.36.0-SNAPSHOT
- 02:45 PM Revision 2641ef54 (cdm-server): updating poms for 5.36.0-SNAPSHOT development
- 02:41 PM Revision 39d4cb76 (cdmlib): updating poms for 5.36.0-SNAPSHOT development
- 02:38 PM Revision da7a1612 (cdmlib): ref #10072 remove logging to file in cdmlib log4j2.xml -s
- 02:22 PM Revision 63af5415 (cdmlib): javadoc
- 01:51 PM Revision af15e2e3 (taxeditor): fix #10214 fix overriden cache configuration creation, replace eternal by 1h / 20min
- 01:51 PM Revision 1254f0f0 (taxeditor): cleanup
- 12:21 PM Revision 0eae45c1 (taxeditor): ref #10182: disable details view after freetext changes
- 12:13 PM Revision 215f1b60 (cdmlib): ref #6407 add commented 3.x version to compiler plugin
- 12:11 PM Revision 0588b251 (cdmlib): cleanup
- 11:15 AM Revision cf54a234 (taxeditor): ref #10182: update details view when it gets the focus and there are changes - continue
- 10:51 AM Revision e65bc0e2 (taxeditor): ref #10182: update details view when it gets the focus and there are changes
- 09:53 AM Revision b3cd5153 (taxeditor): ref #10182: disable details view after editing name in name editor - code cleaning
- 09:46 AM Revision 5379e4c7 (taxeditor): ref #10182: disable details view after editing name in name editor - continue
- 09:41 AM Revision abe228a4 (taxeditor): ref #10182: disable details view after editing name in name editor, refresh after save
- 09:28 AM Revision 6abed072 (taxeditor): ref #10182: disable details view after editing name in name editor
- 08:46 AM Revision 9d6a9bbd (taxeditor): ref #10182: revert refresh of details view when loosing focus
- 01:34 AM Revision 28a2e0b5 (taxeditor): ref #10214 rename CdmCacheBase to CdmPermanentCacheBase in TaxEditor (cont.)
- 01:13 AM Revision 87734bf5 (taxeditor): ref #10214 rename CdmCacheBase to CdmPermanentCacheBase in TaxEditor
- 01:05 AM Revision 23732475 (cdmlib): ref #10214 rename CdmCacheBase to CdmPermanentCacheBase
- 12:51 AM Revision 20e97970 (cdm-vaadin): ref #3408 remove EhCacheFacade beans from vaadin applicationContext.xml as it is probably not used in vaadin
- 12:49 AM Revision 28a5e1cd (cdm-vaadin): cleanup
- 12:48 AM Revision c19e393b (cdm-vaadin): ref #10214 adapt vaadin to new CdmPermanentCacheBase name
01/04/2023
- 11:53 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
- This should be fixed. Please review.
The most important result should be, that terms are not loaded anymore when c... - 11:40 PM bug #10214 (Resolved): Cache configuration for term cache not correctly initialized in taxeditor
- Applied in changeset commit:cdmlib|61cf7e7af3a0e164f63cb40ec9d897783e376dca.
- 12:24 AM bug #10214 (Feedback): Cache configuration for term cache not correctly initialized in taxeditor
- This should still be handled in current target version.
- 11:32 PM Revision 61cf7e7a (cdmlib): fix #10214 fix term (default) cache configuration handling
- 11:29 PM Revision 105117de (cdmlib): cleanup
- 11:25 PM Revision 25ba5d31 (taxeditor): cleanup
- 10:20 PM task #9207 (Duplicate): update ehcache dependency and handle hibernate-ehcache
- 10:10 PM task #10218 (New): Unify cache handling in CDM platform
- Currently ehCache is used in different ways throughout the platform.
* transient entity cache - used by TaxEditor ... - 08:02 PM Revision 81ae1883 (cdmlib): ref #10077 remove statistics setting from ehCache config as it is deprectated
- Signed-off-by: Andreas Müller <a.mueller@bgbm.org>
- 06:27 PM task #10201 (Closed): Make synonym type an enum
- Andreas Müller wrote in #note-8:
> still need to test taxeditor and fix dozer test
dozer test fixed and no proble... - 06:24 PM Revision aecc18bb (cdmlib): ref #10201 fix dozer test for synonym type mapping
- 06:22 PM Revision 70711bd7 (cdmlib): cleanup
- 04:08 PM Revision e6842c0d (cdmlib): javadoc for TDWG ontology mapping classes
- 04:02 PM bug #10182 (Closed): Portal does not show typespecimen for duplicated typedesignation
- Looks ok now, I think we can finally close this ticket now.
- 03:07 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-30:
> Katja Luther wrote in #note-29:
> > made code cleaning mentioned in note#23, so... - 02:50 PM bug #10182 (Feedback): Portal does not show typespecimen for duplicated typedesignation
- Katja Luther wrote in #note-29:
> made code cleaning mentioned in note#23, so we can close this ticket.
The code ... - 02:15 PM bug #10182 (Closed): Portal does not show typespecimen for duplicated typedesignation
- made code cleaning mentioned in note#23, so we can close this ticket.
- 12:05 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Katja Luther wrote in #note-26:
> Andreas Müller wrote in #note-25:
> > Andreas Müller wrote in #note-22:
> > > I ... - 09:16 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-24:
> I fixed the widgetIsDisposed issue already. Please review and do the other chang... - 09:15 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-25:
> Andreas Müller wrote in #note-22:
> > I tried to fix the ClassNotFoundException... - 03:01 PM Revision e2833b13 (taxeditor): ref #10182: code cleaning with previous changes
- 02:57 PM Revision 16f7b120 (taxeditor): Revert "ref #10182 fix widget is disposed in OccurrenceStatusElement"
- This reverts commit fdd9dc5b0e41169f0c258dff17dface2afbea702.
- 02:57 PM Revision c919ecdb (taxeditor): Revert "ref #10182: code cleaning"
- This reverts commit ecf44663eebe48174db1e129091d879b5aaf2eaa.
- 02:15 PM Revision ecf44663 (taxeditor): ref #10182: code cleaning
- 02:05 PM feature request #10196 (Closed): Hybrid structure-state terms
- works as expected now.
- 01:27 PM Revision 371f732a (cdmlib): try to fix test running in suite (cont.)
- 01:04 PM Revision ea49adce (cdmlib): try to fix test running in suite
- 11:59 AM Revision 3b7d528f (cdmlib): cleanup
- 11:57 AM Revision e8fbd83a (cdmlib): ref #10182 adding test to find out what the validation behavior is during load
- 12:22 AM bug #10198 (Closed): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Andreas Müller wrote in #note-10:
> Moving in TaxEditor now works as expected.
>
> There is still an issue that o... - 12:10 AM feature request #6794: Improve term structure
- Issues with orderindex in existing database can be found by the following queries which search for records that have ...
01/03/2023
- 11:52 PM bug #10111: Data loss e.g. when entering type information
- After short testing I could not reproduce this issue anymore. Maybe it was fixed with #10186. However, this is not gu...
- 11:33 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-22:
> I tried to fix the ClassNotFoundException (taxeditor:commit:384cf0c384d17e0f). S... - 11:22 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- I fixed the widgetIsDisposed issue already. Please review and do the other changes.
- 10:12 PM bug #10182 (Feedback): Portal does not show typespecimen for duplicated typedesignation
- In the TaxEditor log I find multiple times
~~~
!ENTRY eu.taxeditor 2 0 2023-01-03 21:56:39.428
!MESSAGE Widget i... - 05:11 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- I tried to fix the ClassNotFoundException (taxeditor:commit:384cf0c384d17e0f). Still needs to be tested.
- 02:34 PM bug #10182 (Resolved): Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-20:
> did you put this back to InProgress on purpose?
the exception isn't fixed but... - 02:28 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- did you put this back to InProgress on purpose?
- 01:29 PM bug #10182 (In Progress): Portal does not show typespecimen for duplicated typedesignation
- 01:29 PM bug #10182 (Resolved): Portal does not show typespecimen for duplicated typedesignation
- Katja Luther wrote in #note-16:
> Andreas Müller wrote in #note-14:
> > Katja Luther wrote in #note-12:
> > ...
>... - 01:10 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Katja Luther wrote in #note-16:
> Andreas Müller wrote in #note-14:
> > Katja Luther wrote in #note-12:
> > ...
>... - 12:42 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-14:
> Katja Luther wrote in #note-12:
> ...
> > We both (AM und KL) checked the clon... - 12:40 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-13:
> I think the TaxEditor implementation does not use DerivedUnit.clone(). However, ... - 12:38 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Katja Luther wrote in #note-12:
...
> We both (AM und KL) checked the clone mechanism, but during cloning there is ... - 12:37 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- I think the TaxEditor implementation does not use DerivedUnit.clone(). However, there was a bug in the clone method t...
- 10:49 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-5:
> Katja Luther wrote in #note-2:
> > The webservice failed because the derived uni... - 10:47 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Added a check in derived unit wizard, which is used for editing specimens of type designations.
- 09:29 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- when adding a occurrenceStatus without type now an exception is thrown:
~~~
2023-01-03T09:28:35.757: http://loc... - 11:21 PM Revision fdd9dc5b (taxeditor): ref #10182 fix widget is disposed in OccurrenceStatusElement
- 10:25 PM Revision 6b92893f (cdmlib): add OccurrenceStatus to PermissionClass
- 10:15 PM Revision edc115e3 (cdmlib): add DerivationEvent to PermissionClass
- 10:07 PM Revision 6f665ff7 (taxeditor): cleanup
- 06:33 PM feature request #10202 (Closed): Allow entering specimen in fact sources in taxeditor
- works as expected now
- 05:50 PM bug #10214 (In Progress): Cache configuration for term cache not correctly initialized in taxeditor
- 05:04 PM Revision 0070dfe4 (taxeditor): cleanup
- 05:04 PM Revision 384cf0c3 (taxeditor): ref #10182 try to fix ClassNotFoundException for javax.validation.ConstraintViolation
- 03:58 PM feature request #10196: Hybrid structure-state terms
- Katja Luther wrote in #note-17:
> Clicking on character "growth form" in Bupleurum instance results in StackOverflow... - 09:13 AM feature request #10196 (Feedback): Hybrid structure-state terms
- Clicking on character "growth form" in Bupleurum instance results in StackOverflowException (in DescriptiveDataSet Ed...
- 03:54 PM Revision ea76aec6 (cdmlib): ref #10196 fix findByTermType
- 03:54 PM Revision bf502b97 (cdmlib): cleanup
- 03:53 PM Revision 0743ef0c (cdmlib): commit only
- 01:15 PM Revision 9a095fa3 (taxeditor): ref #10182: mark type red if empty
- 12:29 PM Revision 0ec25996 (cdmlib): javadoc
- 12:27 PM Revision 98ba42ca (cdmlib): ref #2506, ref #10182 fix clone method for DerivedUnit.status
- 12:26 PM Revision 0a403690 (cdmlib): cleanup
- 11:02 AM Revision 638a7036 (taxeditor): fix NPE
- 10:42 AM Revision fbbfeef9 (taxeditor): ref #10182: do not allow to save derived unit without occurrence status type in wizard
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