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From 01/01/2023 to 01/30/2023

01/30/2023

05:52 PM task #10239: Caucasus databases and portals available
UUIDs:
ERS:
spricht was dagegen, die uuids für Namen gleich zu halten? Da erwarte ich kaum Abweichungen, oder? ...
Andreas Müller
05:44 PM task #10239: Caucasus databases and portals available
sec-refs:
ERS:
wahrscheinlich gibt es nicht viele Daten, aber wenn, sollten wir sie mit exportieren. Es ist noc...
Andreas Müller
05:36 PM task #10239: Caucasus databases and portals available
WFO-IDs:
NaK:
wäre auf jeden Fall sinnvoll, und das Institut in Baku ist auch Teil des WFO Konsortiums.
Wenn wir d...
Andreas Müller
05:33 PM task #10239: Caucasus databases and portals available
Kew/ILDIS:
ERS:
diese haben ja gar keine Verbreitungsangaben für die Südkaukasusländer, sondern nur für TCS. Si...
Andreas Müller
05:27 PM task #10239: Caucasus databases and portals available
AM:
Verstehe ich es richtig, dass dann im Armenien Slice wirklich nur Taxa landen sollen, die in Armenien vorkomme...
Andreas Müller
05:26 PM task #10239: Caucasus databases and portals available
NaK:
anbei sind nochmal die drei Proposals. Ich glaube, dass Anton sie kannte, Andreas und Katja aber vermutlich n...
Andreas Müller
05:22 PM task #10239 (New): Caucasus databases and portals available
This is kind of a master ticket for issues related to the 3 caucasus portals and the caucasus project.
Also use the ...
Andreas Müller
05:12 PM feature request #5807: implement sub-distribution area inclusion in TaxonService.findTaxaAndNamesByFullText()
Check if this is still an open issue Andreas Müller
04:59 PM feature request #10238 (New): Show accepted name for name type designations with types being synonyms
NaK:
wir hatten gestern mit einigen Autoren der Caryophyllaceae-Checkliste eine Format-Frage diskutiert, und ich w...
Andreas Müller
04:03 PM task #10237 (New): Remove generation of SLD files on file system
Franck:
By looking at the code, I noticed that its biggest drawback is that it generates the SLD files and images ...
Andreas Müller
03:57 PM Revision dfe955e1 (cdmlib): ref #9664 fix updateNomenclaturalCache() and updateCollectorCache() in Person
Andreas Müller
03:08 PM Revision 077baea5 (cdmlib): ref #10232 finalize CommonNameExcelImport and some cleanup
Andreas Müller
02:39 PM task #10232 (Resolved): Import Finnish common names
We still need to run the final import for the Swedish names. Afterwards, the ticket can be closed. Andreas Müller
12:20 PM task #10232: Import Finnish common names
ERS:
aus meiner Sicht kann es losgehen, scheint alles geklärt. Die wenigen eventuellen Homonyme kann ich sicher na...
Andreas Müller
10:04 AM Revision 051d16ee (cdmlib-apps): ref #10232 add Finnish common name activator (cont.)
Andreas Müller

01/27/2023

06:19 PM task #10232: Import Finnish common names
Andreas Müller wrote in #note-5:
> AM:
>
> ich habe jetzt den Commons Name Import für die Finnischen Daten weitge...
Andreas Müller
04:56 PM task #10232: Import Finnish common names
AM:
ich habe jetzt den Commons Name Import für die Finnischen Daten weitgehend fertig.
Das Hauptproblem ist dabei...
Andreas Müller
08:42 AM Revision b675f9d4 (cdmlib): fix https in EditGeoServiceTest
Andreas Müller
08:41 AM Revision 33078d01 (cdmlib): ref #10232 first implementation for E+M finnish common name import
Andreas Müller

01/26/2023

10:37 AM Revision 68f017cc (taxeditor): ref # 10221: code cleaning - move remote server view to store
Katja Luther
10:36 AM Revision 30ab88dd (taxeditor): ref #10221: code cleaning
Katja Luther

01/25/2023

06:49 PM feature request #9197 (Discussed): Handle caucasus conspectus data in E+M and caucasus portal
Andreas Müller
06:45 PM feature request #9197 (In Progress): Handle caucasus conspectus data in E+M and caucasus portal
Andreas Müller
06:49 PM task #10236 (In Progress): Import data from caucasus DB to E+M
Andreas Müller
06:48 PM task #10236 (Discussed): Import data from caucasus DB to E+M
for details see #7921
Maybe not needed. Wait for final decision.
Andreas Müller
02:58 PM Revision f3367749 (taxeditor): ref #10221: adaptions in CdmServerInfo
Katja Luther
02:56 PM Revision 2b54bf6d (taxeditor): ref #10221: fix create new remote server entry
Katja Luther
02:31 PM Revision e98e917e (taxeditor): ref 10221: adapt view
Katja Luther
01:45 PM Revision ed5b62c9 (taxeditor): ref 10221: abstract class for remote server handler
Katja Luther
01:39 PM feature request #10221 (In Progress): Add form to edit the json file with cdmserver info
Added new view and edit and delete handlers, the new creation still does not work. Katja Luther
01:38 PM Revision ab0d5feb (taxeditor): ref #10221: Add view and wizard to edit remote servers
Katja Luther
12:37 PM bug #10234: MetaData of images coming from the new image server are not shown
Dominik Roepert wrote in #note-5:
> iptc
> Headline
> Caption
> Country/PrimaryLocationName
> ProvinceState
> ...
Andreas Müller
09:13 AM bug #10234: MetaData of images coming from the new image server are not shown
iptc
Headline
Caption
Country/PrimaryLocationName
ProvinceState
City
Sublocation
DateCreated
Credit
CopyrightNotice
...
Dominik Roepert

01/24/2023

11:28 PM Revision d5797bc3 (cdmlib-apps): ref #10232 add Finnish common name activator
Andreas Müller
11:28 PM Revision 3af4f365 (cdmlib-apps): cleanup
Andreas Müller
03:19 PM bug #10234 (In Progress): MetaData of images coming from the new image server are not shown
Katja Luther
01:20 PM bug #10234 (Closed): MetaData of images coming from the new image server are not shown
mail DR:
Guten Morgen,
könnten wir uns zum Metadatenworkflow nochmal besprechen? Die Bilder werden jetzt über d...
Katja Luther
10:41 AM bug #6500: Remaining issues for volume formating in generic references
The classes to be used are ReferenceDefaultCacheStrategy and ReferenceDefaultCacheStrategyTest Andreas Müller

01/23/2023

10:05 PM feature request #10233 (New): Allow "for grouping only" structures for terms
Probably we need these for both, vocabularies and lists/trees/graphs.
As an example: structures which are more mod...
Andreas Müller
09:15 PM feature request #10133: Improve ontology state vocabularies
entire plant-habit and -ecological adaptiations should be fixed now Andreas Müller
08:59 PM task #10224 (Closed): Import Kew Nyctaginaceae data to Caryophyllales
Andreas Müller
04:29 PM task #10224 (Resolved): Import Kew Nyctaginaceae data to Caryophyllales
Applied in changeset commit:cdmlib-apps|7a76c575543eac54588c7acfb7f36ea27129a2ce. Andreas Müller
05:40 PM Revision 5e328b3f (cdmlib-apps): ref #10224 final to KewImport for Nyctaginaceae import (cont.)
Andreas Müller
04:29 PM Revision 5a432167 (cdmlib-apps): cleanup
Andreas Müller
04:29 PM Revision 7a76c575 (cdmlib-apps): fix #10224 final to KewImport for Nyctaginaceae import
Andreas Müller
03:48 PM task #10232 (Closed): Import Finnish common names
File to be found at:
ERS:
ja genau, in erster Linie geht es bei dieser Liste nur um den Common Name Import, da ...
Andreas Müller
11:44 AM bug #10230 (New): Nomenclatural reference selection dialogue should behave like the other reference selection dialogues
mail WB:
ich bin mal wieder in der Warteschleife, hier im Details View, Nom. Source, Reference.

bis zu 2 Minu...
Katja Luther

01/21/2023

01:07 AM Revision 4ffefb82 (cdmlib): ref #10222 annotation ids and cleanup
Andreas Müller
12:37 AM Revision 8b6c9ee0 (cdmlib): ref #10222 change labels for TaxonBaseDto (fix)
Andreas Müller
12:20 AM Revision ed8f7a1c (cdmlib): minor
Andreas Müller
12:20 AM Revision fb97750d (cdmlib): ref #10222 add supplemental data (cont.) + change labels for TaxonBaseDto
Andreas Müller

01/20/2023

11:11 PM Revision b53e0283 (cdmlib): ref #10222 add supplemental data
Andreas Müller
12:11 PM Revision 7c921120 (cdm-dataportal): adapt taxon node status text
Katja Luther
11:10 AM Revision ae0f24f2 (cdmlib): add method to get uuid and abbrev titlecache for a set of uuids
Katja Luther

01/19/2023

02:20 PM task #10205 (Resolved): Update GBIF import to modern json library.
The jsonlib library and depending libraries are removed again.
This should work now, please review.
Katja Luther
01:41 PM task #10205 (In Progress): Update GBIF import to modern json library.
The gbif import on cdmlibrary side is adapted. Katja Luther
02:18 PM Revision 21527fe6 (taxeditor): ref #10205: remove jsonlib library again from MANIFEST.MF
Katja Luther
02:00 PM Revision def0d632 (cdmlib): ref #10205: fixing parseOriginalDataSetUri
Katja Luther
01:35 PM Revision 4a24714d (cdmlib): ref #10205: using Jackson library for GBIF import
Katja Luther
01:11 AM Revision 8eeb988a (cdmlib): ref #10222 add tagged text for typification (cont.)
Andreas Müller
01:08 AM Revision 2a70744d (cdmlib): ref #10222 add tagged text for synonyms
Andreas Müller
01:08 AM Revision 2de51344 (cdmlib): cleanup
Andreas Müller
01:07 AM Revision ba3f97f8 (cdmlib): ref #10222 move TypedLabel to model (fix NPE when using label only)
Andreas Müller
12:33 AM Revision ed1bc91c (cdm-vaadin): cleanup TypedEntityReference constructors in vaadin and general cleanup
Andreas Müller
12:32 AM Revision cbcfbd6b (cdmlib): cleanup TypedEntityReference constructors in cdmlib
Andreas Müller
12:00 AM Revision 29532667 (cdmlib): ref #10222 add tagged text for typification
Andreas Müller

01/18/2023

11:51 PM Revision 65dea50f (cdmlib): ref #10222 enable message handling and add message for type designation formatting exceptions
Andreas Müller
11:33 PM Revision 7142f595 (cdmlib): ref #10222 rename ContainerDto.collection to items
Andreas Müller
11:30 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
taxonNode agent relationships should be implemented now. Please review. Do we need more fields (I tried to use only t... Andreas Müller
04:29 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
Some tetst data available at: https://test.e-taxonomy.eu/cdmserver/cyprus/portal/taxon/a4637006-8ea3-443b-b4e6-b6f668... Andreas Müller
02:25 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
> * specimen: could we reuse or reorganize the already existing derivedUnit/fieldunit dtos? They are already implemen... Andreas Müller
02:21 PM task #10222: Use DTOs for portal taxon page - first implementation for E+M
> * taxonName: should everything be handled in typedLabel or in own DTO?
> * if we have an own dto, we can add ran...
Andreas Müller
11:28 PM Revision 03573c63 (cdmlib): ref #10222 add agentlink to taxonNodeAgentRelDto
Andreas Müller
11:18 PM Revision a1fd62a1 (cdmlib): ref #10222 use taggedText for taxon label for now and cleanup
Andreas Müller
10:12 PM Revision 1ba32c3e (cdmlib): ref #10222 move TypedLabel to model (fix text data label handling) and cleanup
Andreas Müller
10:07 PM Revision 5f2cda93 (cdmlib): ref #10222 first implementation for typification in TaxonPageDto
Andreas Müller
10:01 PM Revision 40499c6d (cdmlib): ref #10222 taxonnode agent relations to TaxonNodeDTO (fix) and doc
Andreas Müller
10:00 PM Revision d17eff4c (cdmlib): ref #10222 move TypedLabel to model
Andreas Müller
09:32 PM Revision f4ebb25c (cdmlib): ref #10222 taxonnode agent relations to TaxonNodeDTO and doc
Andreas Müller
02:54 PM bug #10228: Fields for elevation and date should always be expanded
This should be fixed, please review. Katja Luther
02:53 PM bug #10228 (Resolved): Fields for elevation and date should always be expanded
Applied in changeset commit:taxeditor|be9ad72658f97d4481f4ec6311bfe65ba1551534. Katja Luther
02:40 PM Revision be9ad726 (taxeditor): fix #10228: open fields for elevation and date in specimen dialog
Katja Luther
02:15 PM Revision bdf714a1 (cdmlib): ref #10222 add status and statusNote to TaxonNodeDTO (fix)
Andreas Müller
11:49 AM Revision 88a09909 (cdmlib): ref #10222 add status and statusNote to TaxonNodeDTO
Andreas Müller

01/17/2023

07:09 PM Revision 390cc644 (cdmlib): ref #10222 first incomplete implementation of taxonPageDto
Andreas Müller
03:02 PM bug #10228 (In Progress): Fields for elevation and date should always be expanded
mail NaK:
noch eine gaanz große Bitte für den nächsten Release, die hoffentlich leicht zu machen ist
Es wäre to...
Katja Luther
02:46 PM Revision e41b3686 (cdmlib): ref #10222 first incomplete implementation of synonymy (cont.)
Andreas Müller
12:26 AM Revision 173ccb3f (cdmlib-apps): ref #10049, ref #10050, ref #10184 add area geo service mapping for MCL
Andreas Müller

01/16/2023

11:16 PM task #10227 (New): Implement bioschema.org on taxon pages
see https://bioschemas.org/profiles/
and https://bioschemas.org/profiles/Taxon/1.0-RELEASE for better findability
...
Andreas Müller
11:10 PM Revision 1eb2f086 (cdmlib): ref #10222 first incomplete implementation of synonymy (cont.)
Andreas Müller
10:52 PM task #10226 (New): Upgrade to Spring 6.x
copied from #10216 :
* spring 6 links: see also https://www.heise.de/hintergrund/Spring-Framework-6-verarbeitet-N...
Andreas Müller
12:07 PM Revision 3c582c09 (taxeditor): add only exception, not exception and message
Katja Luther
11:47 AM Revision 6c41cae9 (cdmlib): do not add exceptions for name deletion a second time
Katja Luther

01/15/2023

11:39 PM Revision 49e6e48d (cdmlib): cleanup
Andreas Müller
11:39 PM Revision a2fa0deb (cdmlib): ref #10222 first incomplete implementation of synonymy
Andreas Müller
09:58 PM Revision 23f524d6 (cdmlib-apps): ref #10224 implement Kew Nyctaginaceae import
Andreas Müller
09:56 PM Revision 081ddf46 (cdmlib-apps): rename Kew imports
Andreas Müller

01/13/2023

02:08 PM Revision 6b925e3f (taxeditor): fix sorting in termcombo
Katja Luther
12:29 PM task #9940: Handle type category formatting in compact typification strings
By the way, the above notes from NoK are also handled in #9941 which is partly a duplicate for this ticket. Andreas Müller
12:28 PM task #9940: Handle type category formatting in compact typification strings
AM
vielen Dank für die Anmerkungen. Ich habe das auch so in Erinnerung und wir werden versuchen es so zu formatier...
Andreas Müller
12:24 PM task #9940: Handle type category formatting in compact typification strings
NoK:
all,
I strongly prefer the style with the main typification put in front because this is the least redund...
Andreas Müller
11:00 AM feature request #10133: Improve ontology state vocabularies
AM:
hier mal die Zusammenfassung, welche Terme in „regions“ bereits verwendet werden.
• abaxial face (1x)
• ap...
Andreas Müller
10:18 AM bug #10225: MultipleRepresentationException when moving synonym in homotypic group
Maybe it is the same as #8591, but in this ticket the exception always appears after setting a synonym as basionym. Katja Luther
10:16 AM bug #10225 (New): MultipleRepresentationException when moving synonym in homotypic group
mail NaK:
Hi,

beim Taxon Mammillaria karwinskiana gibt es zwei Synonyme M. senckei, die wollte ich zu einer ho...
Katja Luther

01/12/2023

04:00 PM task #10224 (Closed): Import Kew Nyctaginaceae data to Caryophyllales
Andreas Müller
01:14 PM bug #10197: Show empty page for delay while updating
Release 5.36 is a portal performance sprint, so I move this ticket to 5.37 Katja Luther
12:49 PM task #10220 (Closed): Remove SpecimenCdmExcelImport and EndnoteImport in TaxEditor
Cleanup finished, so we can close this ticket Katja Luther
12:48 PM Revision f16c3c79 (taxeditor): ref #10220: cleanup AppModelid
Katja Luther
12:45 PM Revision ab261bc7 (taxeditor): ref #10220: cleanup bundle.properties continue
Katja Luther
12:43 PM Revision 3c8a6a95 (taxeditor): ref #10220: cleanup bundle.properties
Katja Luther
11:36 AM feature request #1742: Adapt the ZooNameDefaultCacheStrategy
Also check if the order of ex-authors is correct. It is the the opposite to botanical names Andreas Müller
11:29 AM bug #2121: Series part is not reflected in cache strategy
is this still open? Andreas Müller
11:19 AM bug #7879: Book CacheStrategy does not show 'place published', 'publisher', 'editor'
maybe a duplicate for #10245 Andreas Müller

01/11/2023

11:11 PM Revision aa222bf3 (cdmlib): ref #10222 handle count in Container
Andreas Müller
11:06 PM Revision 2ea43c9e (cdmlib): cleanup
Andreas Müller
11:04 PM Revision a3841565 (cdmlib): ref #10222 first version of a taxon page dto framework (first TextData)
Andreas Müller
01:31 PM Revision 81321e9d (cdmlib): test
Katja Luther
01:19 PM bug #10223 (New): References for lectotypes should have short references, not full authorship
NoK:
bis vor Kurzem hatten wir für die Lectotyp-Referenz im Portal die Konvention, dass ein Kurzverweis in Klammer...
Andreas Müller
01:10 PM feature request #10206 (In Progress): Add publish flag to description base
Andreas Müller
12:15 PM Revision e3193da1 (cdmlib): minor
Katja Luther
12:00 PM Revision 3d586a45 (cdmlib-apps): adapt pesi to new getHqlResult signature
Andreas Müller
07:51 AM Revision ae17a4ad (cdmlib): ref #10222 first version of a taxon page dto framework (cont.)
Andreas Müller

01/10/2023

11:44 PM Revision 24921917 (cdmlib): ref #10222 first version of a taxon page dto framework (cont.)
Andreas Müller
11:03 PM feature request #10206: Add publish flag to description base
WGB:
Hatten wir eigentlich schon die Sache mit den Factual Datasets zur Publikation diskutiert?
Wir haben ja die...
Andreas Müller
11:02 PM feature request #10206: Add publish flag to description base
First we need to check how easy it is to use the enumset for query filtering. If it is easy we may use the enumset, o... Andreas Müller
12:48 PM Revision 922e377f (taxeditor): ref 10220: cleanup code after removing specimenExcelImport and endnoteImport
Katja Luther

01/09/2023

07:42 PM task #10222 (In Progress): Use DTOs for portal taxon page - first implementation for E+M
Andreas Müller
07:31 PM task #10222 (Closed): Use DTOs for portal taxon page - first implementation for E+M
... to improve performance and simplify dataportal rendering. If possible formatting should take place server side.
...
Andreas Müller
07:36 PM Revision f598b089 (cdmlib): ref #10222 first version of a taxon page dto framework
Andreas Müller
06:15 PM Revision 26bb0b57 (cdmlib): cleanup and javadoc
Andreas Müller
11:20 AM bug #10111: Data loss e.g. when entering type information
NaK:
das ist mir auch ein paar Mal passiert, aber so sporadisch, dass ich dachte, ich hätte nicht gespeichert. Ich...
Andreas Müller
10:29 AM feature request #10203: Show specimen sources in publications
As we will work on portal taxon pages in 5.36 this might be an issue that can be solved in 5.36. If not we will move ... Andreas Müller
10:25 AM bug #10068 (Closed): Changing focus to accepted taxon does not work
This works now. Katja Luther
10:06 AM feature request #10221 (Closed): Add form to edit the json file with cdmserver info
For users it is difficult to find and edit the json file to add a new cdm server. Therefore we should have a form in ... Katja Luther

01/07/2023

10:19 PM Revision fd2a7b70 (cdmlib): unify database schemupdater packages
Andreas Müller

01/06/2023

09:40 PM bug #10111: Data loss e.g. when entering type information
AM:
auch das Ticket #10111 sollte jetzt final gereviewed werden nach dem das Release jetzt draußen ist.
In dies...
Andreas Müller
09:30 PM bug #10053 (Resolved): Problems with saving of secundum references
AM to Maryam:
... Katja and I can’t reproduce. Could you please check next time you work with the TaxEditor if it ...
Andreas Müller
09:16 PM bug #10054: Changes on secundum reference are lost after changing status to basionym
Close ticket fully if Maryam does not report again until 4/23 Andreas Müller
09:16 PM bug #10054 (Resolved): Changes on secundum reference are lost after changing status to basionym
AM to Maryam:
...
As Katja and I can’t reproduce this bug anymore we would like to ask you if you can still repro...
Andreas Müller
08:55 PM bug #8953: Focus not correctly evaluated for details view when switching between names
Close in 4/23 if not reported again. Andreas Müller
08:54 PM bug #8953: Focus not correctly evaluated for details view when switching between names
AM:
ihr hattet das Problem in Ticket #8953 vor 2 Jahren beschrieben. Wir haben in diesem Bereich jetzt einiges ver...
Andreas Müller
08:49 PM bug #10191 (Closed): Error message on taxon specimen page for non-atomized specimens
This looks fine also on production so we close the ticket.
The data itself should still be cleaned up.
Andreas Müller
08:46 PM bug #8653 (Closed): NullPointerException (NPE) when focusing Taxon Name Editor
This issue was obiously not related to the import but to code changes related to preferences. The fix looks reasonabl... Andreas Müller
08:02 PM Revision 2cb7268c (taxeditor): ref #6343, ref 6794 adapt taxeditor to removal of non-typified TermVocabulary.NewInstance method
Andreas Müller
08:02 PM Revision 9ec83bdc (taxeditor): cleanup
Andreas Müller
07:11 PM Revision d7b3d794 (cdmlib): ref #6343, ref 6794 fix creation of OrderedTermVocabulary in imports
Andreas Müller
07:10 PM bug #8270: TermDTOs with an orderIndex are ordered in unordered term vocabularies
Is this still open? Andreas Müller
06:19 PM Revision 816eb1d7 (cdmlib-apps): update poms to 5.36
Andreas Müller
06:19 PM Revision c9a18b1c (cdmlib-apps): cleanup
Andreas Müller
06:02 PM Revision cf70a387 (cdmlib): ref #10201 additional update script for synonym type
Andreas Müller
06:01 PM Revision 40e58fe3 (cdmlib): minor
Andreas Müller
05:01 PM task #10220 (In Progress): Remove SpecimenCdmExcelImport and EndnoteImport in TaxEditor
classes and menu entries are removed, still needs some clean up (strings, comments etc) Katja Luther
02:41 PM task #10220 (Closed): Remove SpecimenCdmExcelImport and EndnoteImport in TaxEditor
mail AM:
~~~
wenn ich es richtig sehe, verwendet der Specimen CDM Excel Import noch nicht die Remoting Implementi...
Katja Luther
02:55 PM Revision a3072f4e (taxeditor): ref #10220: remove unused import code
Katja Luther
11:58 AM Revision 93a7e8c3 (taxeditor): remove menu entries for SpecimenExcelImport and Endnote import
Katja Luther
11:12 AM Revision 65c5c491 (cdmlib): ref #10072 remove file-appender from cdmlib-test log4j2-test
Andreas Müller
10:24 AM Revision 51ed8da5 (taxeditor): continue cleanup checklist files
Katja Luther
10:19 AM Revision 9fb100fb (taxeditor): remove unused class ChecklistEditorInput
Katja Luther

01/05/2023

09:15 PM task #10205: Update GBIF import to modern json library.
please also remove the .ignore entries Andreas Müller
09:03 PM Revision 356e00f7 (taxeditor): javadoc
Andreas Müller
09:03 PM Revision 7b40eb6e (taxeditor): ref #10204, ref #10205 add commons-beanutils and json-lib to .gitignore in taxeditor
Andreas Müller
08:57 PM Revision d197381e (taxeditor): ref #10055 upgrade postgresql to 42.5.1 in taxeditor
Andreas Müller
08:49 PM Revision 980cb5f2 (cdmlib): ref #10055 upgrade postgresql to 42.5.1 in cdmlib
Andreas Müller
08:16 PM feature request #6794 (In Progress): Improve term structure
Andreas Müller
08:13 PM feature request #6794 (Duplicate): Improve term structure
Andreas Müller
06:33 PM task #10216 (In Progress): Upgrade to Spring 5.x
Andreas Müller
05:52 PM bug #6407: Upgrade maven compiler plugin to latest version

I tried to handle aspectj with aspectj-maven-plugin (and remove the ant-run-plugin) in cdmlib-model
https://www.moj...
Andreas Müller
05:49 PM Revision ae2585a1 (cdm-server): Merge branch 'release/5.35.0' into develop
jenkins
05:49 PM Revision 45b71a61 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
05:48 PM Revision 6b6b577d (cdm-server): updating poms for branch'release/5.35.0' with non-snapshot versions
jenkins
05:48 PM Revision 60fe280b (cdm-webapp): Merge branch 'release/5.35.0' into develop
jenkins
05:48 PM Revision 70f70b82 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
05:47 PM Revision acdd8133 (cdm-webapp): updating poms for branch'release/5.35.0' with non-snapshot versions
jenkins
05:47 PM Revision 788cfa8e (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.35.0
jenkins
05:35 PM Revision bc57f8df (cdm-vaadin): Merge branch 'release/5.35.0' into develop
jenkins
05:35 PM Revision f585e16a (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
05:31 PM Revision 579728bb (cdm-vaadin): updating poms for branch'release/5.35.0' with non-snapshot versions
jenkins
05:31 PM Revision d8d478e1 (cdm-vaadin): jenkins bumping cdmlib.version to 5.35.0
jenkins
05:31 PM Revision e585c18c (taxeditor): Merge branch 'release/5.35.0' into develop
jenkins
05:31 PM Revision aa7460a8 (taxeditor): Merge branch 'release/5.35.0'
jenkins
05:30 PM Revision 8f5ebfe6 (cdm-dataportal): Merge branch 'release/5.35.0' into develop
jenkins
05:30 PM Revision 39bc3a67 (cdm-dataportal): updating poms for branch'release/5.35.0' with non-snapshot versions
jenkins
05:30 PM Revision 12a3b851 (cdm-dataportal): release-preparation: production level css
jenkins
05:29 PM Revision f51ce131 (cdmlib): Updating develop poms back to pre merge state
jenkins
05:29 PM Revision 12833cf2 (cdmlib): Merge branch 'master' into develop
jenkins
05:29 PM Revision fe942f41 (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
05:29 PM Revision 2c4e8753 (cdmlib): Merge branch 'release/5.35.0'
jenkins
05:22 PM task #6981: Migrate to Java 11
This is maybe blocked by upgrading to maven-compiler-plugin 3.x first which has problems with aspectj handling. Andreas Müller
05:16 PM Revision bd858eb5 (cdmlib): updating poms for branch'release/5.35.0' with non-snapshot versions
jenkins
05:06 PM bug #8590 (Duplicate): Details view does not show data of new synonym
This is a duplicate for #10138 and has been fied in current milestone. Andreas Müller
04:57 PM bug #10068 (Resolved): Changing focus to accepted taxon does not work
fixed with commit:a5a95b645c5976. Please review. It also solves the issue that when opening the Taxon Editor the focu... Andreas Müller
03:10 PM bug #10068 (New): Changing focus to accepted taxon does not work
ok,then we keep it in 5.36 Katja Luther
02:54 PM bug #10068: Changing focus to accepted taxon does not work
Katja Luther wrote in #note-2:
> This issue seems to be solved by #10138 and/or #10186. We can remove the version or...
Andreas Müller
02:46 PM bug #10068 (Feedback): Changing focus to accepted taxon does not work
This issue seems to be solved by #10138 and/or #10186. We can remove the version or set it to the current milestone (... Katja Luther
04:46 PM Revision a5a95b64 (taxeditor): ref #10068 fix start focus in Taxon Editor
Andreas Müller
04:39 PM Revision 1e60a1f3 (taxeditor): cleanup
Andreas Müller
03:22 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
This is still an issue when changing the designation status to holotype, adding a specimen solves the problem. So we ... Katja Luther
03:21 PM bug #8953 (Resolved): Focus not correctly evaluated for details view when switching between names
We will ask users to test after release. Andreas Müller
02:41 PM bug #8953 (Feedback): Focus not correctly evaluated for details view when switching between names
I think this problem is fixed, maybe related to #10138 and #10186. We can remove the version or set it to the current... Katja Luther
03:19 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
Now it should reload after 20min (if idle) or 1h (if not idle). Maybe you can test a last time. But it should work as... Andreas Müller
01:52 PM bug #10214 (Resolved): Cache configuration for term cache not correctly initialized in taxeditor
Applied in changeset commit:taxeditor|af15e2e37989f818b9098b604242a02adf295818. Andreas Müller
12:44 PM bug #10214 (Feedback): Cache configuration for term cache not correctly initialized in taxeditor
Ahh, the reason is that CdmServiceCachingProxy overrides the CdmPermanentCache configuration Andreas Müller
12:44 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
Katja Luther wrote in #note-13:
> Andreas Müller wrote in #note-10:
> > This should be fixed. Please review.
> >
...
Andreas Müller
09:50 AM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
Andreas Müller wrote in #note-10:
> This should be fixed. Please review.
>
> The most important result should be,...
Katja Luther
03:17 PM bug #10186 (Closed): Problems with session handling in taxeditor
Further issues can be handled in the more detailed tickets. Katja Luther
03:12 PM bug #10186 (Resolved): Problems with session handling in taxeditor
Should we close this ticket and open a new one if we do further research on taxeditor sessions? I think there are a c... Andreas Müller
02:58 PM bug #10186: Problems with session handling in taxeditor
Andreas Müller wrote in #note-10:
> Katja Luther wrote in #note-5:
> > SetSelection in setFocus of TaxonNameEditorE4 ...
Katja Luther
02:57 PM bug #10219: Setting the focus to an already selected entity should not refresh the details view
Similar things happen with the SupplementalDataView. Andreas Müller
02:48 PM bug #10219: Setting the focus to an already selected entity should not refresh the details view
Actually if the name editor looses the focus and gets it back the details view still shows the details of the selecte... Katja Luther
02:47 PM bug #10219 (New): Setting the focus to an already selected entity should not refresh the details view
Katja Luther
02:51 PM bug #10138 (Closed): Details view is not updated after freetext change
Katja Luther
02:17 PM bug #10138 (Feedback): Details view is not updated after freetext change
Katja Luther wrote in #note-26:
> This is like it was before, I think there is already a ticket about it. (for examp...
Andreas Müller
01:06 PM bug #10138 (Resolved): Details view is not updated after freetext change
Katja Luther
12:20 PM bug #10138: Details view is not updated after freetext change
Andreas Müller wrote in #note-25:
> Andreas Müller wrote in #note-24:
> > Katja Luther wrote in #note-22:
> > > I jus...
Katja Luther
12:06 PM bug #10138: Details view is not updated after freetext change
Andreas Müller wrote in #note-24:
> Katja Luther wrote in #note-22:
> > I just tried out another implementation: no...
Andreas Müller
11:11 AM bug #10138: Details view is not updated after freetext change
Katja Luther wrote in #note-22:
> I just tried out another implementation: now the detailsviewer just remember that ...
Andreas Müller
11:10 AM bug #10138 (Feedback): Details view is not updated after freetext change
Katja Luther wrote in #note-21:
> The new solution disables the details view after editing the name in name editor, ...
Andreas Müller
10:54 AM bug #10138: Details view is not updated after freetext change
I just tried out another implementation: now the detailsviewer just remember that there are changes in Name Editor an... Katja Luther
09:33 AM bug #10138 (Resolved): Details view is not updated after freetext change
The new solution disables the details view after editing the name in name editor, editing the other names/taxon/synon... Katja Luther
12:58 AM bug #10138 (Feedback): Details view is not updated after freetext change
This needs to be reverted or adapted. Currently the detail view very often refreshes. This happens also in many cases... Andreas Müller
02:50 PM Revision 30c6d54a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.35.0-SNAPSHOT
jenkins
02:50 PM Revision 76f03c68 (cdm-webapp): updating poms for 5.36.0-SNAPSHOT development
jenkins
02:50 PM Revision d9fa7f17 (cdm-webapp): updating poms for 5.35.0 branch with snapshot versions
jenkins
02:49 PM Revision 3b4e277a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.36.0-SNAPSHOT
jenkins
02:49 PM Revision e11f2e25 (taxeditor): Updated version in pom / project files to taxeditor version : 5.36.0-SNAPSHOT and cdmlib version : 5.36.0-SNAPSHOT
jenkins
02:49 PM Revision ebbf2f6e (taxeditor): Updated version in pom / project files to taxeditor version : 5.35.0 and cdmlib version : 5.35.0
jenkins
02:48 PM Revision 1a06921d (cdm-dataportal): updating poms for 5.36.0-SNAPSHOT development
jenkins
02:46 PM Revision 2a46edab (cdm-vaadin): jenkins bumping cdmlib.version to 5.35.0-SNAPSHOT
jenkins
02:45 PM Revision 4a634289 (cdm-vaadin): updating poms for 5.36.0-SNAPSHOT development
jenkins
02:45 PM Revision 5d568fe8 (cdm-vaadin): updating poms for 5.35.0 branch with snapshot versions
jenkins
02:45 PM Revision 3f96c927 (cdm-vaadin): jenkins bumping cdmlib.version to 5.36.0-SNAPSHOT
jenkins
02:45 PM Revision 2641ef54 (cdm-server): updating poms for 5.36.0-SNAPSHOT development
jenkins
02:41 PM Revision 39d4cb76 (cdmlib): updating poms for 5.36.0-SNAPSHOT development
jenkins
02:38 PM Revision da7a1612 (cdmlib): ref #10072 remove logging to file in cdmlib log4j2.xml -s
Andreas Müller
02:22 PM Revision 63af5415 (cdmlib): javadoc
Andreas Müller
01:51 PM Revision af15e2e3 (taxeditor): fix #10214 fix overriden cache configuration creation, replace eternal by 1h / 20min
Andreas Müller
01:51 PM Revision 1254f0f0 (taxeditor): cleanup
Andreas Müller
12:21 PM Revision 0eae45c1 (taxeditor): ref #10182: disable details view after freetext changes
Katja Luther
12:13 PM Revision 215f1b60 (cdmlib): ref #6407 add commented 3.x version to compiler plugin
Andreas Müller
12:11 PM Revision 0588b251 (cdmlib): cleanup
Andreas Müller
11:15 AM Revision cf54a234 (taxeditor): ref #10182: update details view when it gets the focus and there are changes - continue
Katja Luther
10:51 AM Revision e65bc0e2 (taxeditor): ref #10182: update details view when it gets the focus and there are changes
Katja Luther
09:53 AM Revision b3cd5153 (taxeditor): ref #10182: disable details view after editing name in name editor - code cleaning
Katja Luther
09:46 AM Revision 5379e4c7 (taxeditor): ref #10182: disable details view after editing name in name editor - continue
Katja Luther
09:41 AM Revision abe228a4 (taxeditor): ref #10182: disable details view after editing name in name editor, refresh after save
Katja Luther
09:28 AM Revision 6abed072 (taxeditor): ref #10182: disable details view after editing name in name editor
Katja Luther
08:46 AM Revision 9d6a9bbd (taxeditor): ref #10182: revert refresh of details view when loosing focus
Katja Luther
01:34 AM Revision 28a2e0b5 (taxeditor): ref #10214 rename CdmCacheBase to CdmPermanentCacheBase in TaxEditor (cont.)
Andreas Müller
01:13 AM Revision 87734bf5 (taxeditor): ref #10214 rename CdmCacheBase to CdmPermanentCacheBase in TaxEditor
Andreas Müller
01:05 AM Revision 23732475 (cdmlib): ref #10214 rename CdmCacheBase to CdmPermanentCacheBase
Andreas Müller
12:51 AM Revision 20e97970 (cdm-vaadin): ref #3408 remove EhCacheFacade beans from vaadin applicationContext.xml as it is probably not used in vaadin
Andreas Müller
12:49 AM Revision 28a5e1cd (cdm-vaadin): cleanup
Andreas Müller
12:48 AM Revision c19e393b (cdm-vaadin): ref #10214 adapt vaadin to new CdmPermanentCacheBase name
Andreas Müller

01/04/2023

11:53 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
This should be fixed. Please review.
The most important result should be, that terms are not loaded anymore when c...
Andreas Müller
11:40 PM bug #10214 (Resolved): Cache configuration for term cache not correctly initialized in taxeditor
Applied in changeset commit:cdmlib|61cf7e7af3a0e164f63cb40ec9d897783e376dca. Andreas Müller
12:24 AM bug #10214 (Feedback): Cache configuration for term cache not correctly initialized in taxeditor
This should still be handled in current target version. Andreas Müller
11:32 PM Revision 61cf7e7a (cdmlib): fix #10214 fix term (default) cache configuration handling
Andreas Müller
11:29 PM Revision 105117de (cdmlib): cleanup
Andreas Müller
11:25 PM Revision 25ba5d31 (taxeditor): cleanup
Andreas Müller
10:20 PM task #9207 (Duplicate): update ehcache dependency and handle hibernate-ehcache
Andreas Müller
10:10 PM task #10218 (New): Unify cache handling in CDM platform
Currently ehCache is used in different ways throughout the platform.
* transient entity cache - used by TaxEditor ...
Andreas Müller
08:02 PM Revision 81ae1883 (cdmlib): ref #10077 remove statistics setting from ehCache config as it is deprectated
Signed-off-by: Andreas Müller <a.mueller@bgbm.org> Andreas Müller
06:27 PM task #10201 (Closed): Make synonym type an enum
Andreas Müller wrote in #note-8:
> still need to test taxeditor and fix dozer test
dozer test fixed and no proble...
Andreas Müller
06:24 PM Revision aecc18bb (cdmlib): ref #10201 fix dozer test for synonym type mapping
Andreas Müller
06:22 PM Revision 70711bd7 (cdmlib): cleanup
Andreas Müller
04:08 PM Revision e6842c0d (cdmlib): javadoc for TDWG ontology mapping classes
Andreas Müller
04:02 PM bug #10182 (Closed): Portal does not show typespecimen for duplicated typedesignation
Looks ok now, I think we can finally close this ticket now. Andreas Müller
03:07 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-30:
> Katja Luther wrote in #note-29:
> > made code cleaning mentioned in note#23, so...
Katja Luther
02:50 PM bug #10182 (Feedback): Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-29:
> made code cleaning mentioned in note#23, so we can close this ticket.
The code ...
Andreas Müller
02:15 PM bug #10182 (Closed): Portal does not show typespecimen for duplicated typedesignation
made code cleaning mentioned in note#23, so we can close this ticket. Katja Luther
12:05 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-26:
> Andreas Müller wrote in #note-25:
> > Andreas Müller wrote in #note-22:
> > > I ...
Andreas Müller
09:16 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-24:
> I fixed the widgetIsDisposed issue already. Please review and do the other chang...
Katja Luther
09:15 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-25:
> Andreas Müller wrote in #note-22:
> > I tried to fix the ClassNotFoundException...
Katja Luther
03:01 PM Revision e2833b13 (taxeditor): ref #10182: code cleaning with previous changes
Katja Luther
02:57 PM Revision 16f7b120 (taxeditor): Revert "ref #10182 fix widget is disposed in OccurrenceStatusElement"
This reverts commit fdd9dc5b0e41169f0c258dff17dface2afbea702. Katja Luther
02:57 PM Revision c919ecdb (taxeditor): Revert "ref #10182: code cleaning"
This reverts commit ecf44663eebe48174db1e129091d879b5aaf2eaa. Katja Luther
02:15 PM Revision ecf44663 (taxeditor): ref #10182: code cleaning
Katja Luther
02:05 PM feature request #10196 (Closed): Hybrid structure-state terms
works as expected now. Katja Luther
01:27 PM Revision 371f732a (cdmlib): try to fix test running in suite (cont.)
Andreas Müller
01:04 PM Revision ea49adce (cdmlib): try to fix test running in suite
Andreas Müller
11:59 AM Revision 3b7d528f (cdmlib): cleanup
Andreas Müller
11:57 AM Revision e8fbd83a (cdmlib): ref #10182 adding test to find out what the validation behavior is during load
Andreas Müller
12:22 AM bug #10198 (Closed): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Andreas Müller wrote in #note-10:
> Moving in TaxEditor now works as expected.
>
> There is still an issue that o...
Andreas Müller
12:10 AM feature request #6794: Improve term structure
Issues with orderindex in existing database can be found by the following queries which search for records that have ... Andreas Müller

01/03/2023

11:52 PM bug #10111: Data loss e.g. when entering type information
After short testing I could not reproduce this issue anymore. Maybe it was fixed with #10186. However, this is not gu... Andreas Müller
11:33 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-22:
> I tried to fix the ClassNotFoundException (taxeditor:commit:384cf0c384d17e0f). S...
Andreas Müller
11:22 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
I fixed the widgetIsDisposed issue already. Please review and do the other changes. Andreas Müller
10:12 PM bug #10182 (Feedback): Portal does not show typespecimen for duplicated typedesignation
In the TaxEditor log I find multiple times
~~~
!ENTRY eu.taxeditor 2 0 2023-01-03 21:56:39.428
!MESSAGE Widget i...
Andreas Müller
05:11 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
I tried to fix the ClassNotFoundException (taxeditor:commit:384cf0c384d17e0f). Still needs to be tested. Andreas Müller
02:34 PM bug #10182 (Resolved): Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-20:
> did you put this back to InProgress on purpose?
the exception isn't fixed but...
Katja Luther
02:28 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
did you put this back to InProgress on purpose? Andreas Müller
01:29 PM bug #10182 (In Progress): Portal does not show typespecimen for duplicated typedesignation
Katja Luther
01:29 PM bug #10182 (Resolved): Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-16:
> Andreas Müller wrote in #note-14:
> > Katja Luther wrote in #note-12:
> > ...
>...
Katja Luther
01:10 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-16:
> Andreas Müller wrote in #note-14:
> > Katja Luther wrote in #note-12:
> > ...
>...
Andreas Müller
12:42 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-14:
> Katja Luther wrote in #note-12:
> ...
> > We both (AM und KL) checked the clon...
Katja Luther
12:40 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-13:
> I think the TaxEditor implementation does not use DerivedUnit.clone(). However, ...
Katja Luther
12:38 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-12:
...
> We both (AM und KL) checked the clone mechanism, but during cloning there is ...
Andreas Müller
12:37 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
I think the TaxEditor implementation does not use DerivedUnit.clone(). However, there was a bug in the clone method t... Andreas Müller
10:49 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-5:
> Katja Luther wrote in #note-2:
> > The webservice failed because the derived uni...
Katja Luther
10:47 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Added a check in derived unit wizard, which is used for editing specimens of type designations. Katja Luther
09:29 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
when adding a occurrenceStatus without type now an exception is thrown:
~~~
2023-01-03T09:28:35.757: http://loc...
Katja Luther
11:21 PM Revision fdd9dc5b (taxeditor): ref #10182 fix widget is disposed in OccurrenceStatusElement
Andreas Müller
10:25 PM Revision 6b92893f (cdmlib): add OccurrenceStatus to PermissionClass
Andreas Müller
10:15 PM Revision edc115e3 (cdmlib): add DerivationEvent to PermissionClass
Andreas Müller
10:07 PM Revision 6f665ff7 (taxeditor): cleanup
Andreas Müller
06:33 PM feature request #10202 (Closed): Allow entering specimen in fact sources in taxeditor
works as expected now Andreas Müller
05:50 PM bug #10214 (In Progress): Cache configuration for term cache not correctly initialized in taxeditor
Andreas Müller
05:04 PM Revision 0070dfe4 (taxeditor): cleanup
Andreas Müller
05:04 PM Revision 384cf0c3 (taxeditor): ref #10182 try to fix ClassNotFoundException for javax.validation.ConstraintViolation
Andreas Müller
03:58 PM feature request #10196: Hybrid structure-state terms
Katja Luther wrote in #note-17:
> Clicking on character "growth form" in Bupleurum instance results in StackOverflow...
Andreas Müller
09:13 AM feature request #10196 (Feedback): Hybrid structure-state terms
Clicking on character "growth form" in Bupleurum instance results in StackOverflowException (in DescriptiveDataSet Ed... Katja Luther
03:54 PM Revision ea76aec6 (cdmlib): ref #10196 fix findByTermType
Andreas Müller
03:54 PM Revision bf502b97 (cdmlib): cleanup
Andreas Müller
03:53 PM Revision 0743ef0c (cdmlib): commit only
Andreas Müller
01:15 PM Revision 9a095fa3 (taxeditor): ref #10182: mark type red if empty
Katja Luther
12:29 PM Revision 0ec25996 (cdmlib): javadoc
Andreas Müller
12:27 PM Revision 98ba42ca (cdmlib): ref #2506, ref #10182 fix clone method for DerivedUnit.status
Andreas Müller
12:26 PM Revision 0a403690 (cdmlib): cleanup
Andreas Müller
11:02 AM Revision 638a7036 (taxeditor): fix NPE
Katja Luther
10:42 AM Revision fbbfeef9 (taxeditor): ref #10182: do not allow to save derived unit without occurrence status type in wizard
Katja Luther
 

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