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From 12/14/2022 to 01/12/2023

01/12/2023

04:00 PM task #10224 (Closed): Import Kew Nyctaginaceae data to Caryophyllales
Andreas Müller
01:14 PM bug #10197: Show empty page for delay while updating
Release 5.36 is a portal performance sprint, so I move this ticket to 5.37 Katja Luther
12:49 PM task #10220 (Closed): Remove SpecimenCdmExcelImport and EndnoteImport in TaxEditor
Cleanup finished, so we can close this ticket Katja Luther
11:36 AM feature request #1742: Adapt the ZooNameDefaultCacheStrategy
Also check if the order of ex-authors is correct. It is the the opposite to botanical names Andreas Müller
11:29 AM bug #2121: Series part is not reflected in cache strategy
is this still open? Andreas Müller
11:19 AM bug #7879: Book CacheStrategy does not show 'place published', 'publisher', 'editor'
maybe a duplicate for #10245 Andreas Müller

01/11/2023

01:19 PM bug #10223 (New): References for lectotypes should have short references, not full authorship
NoK:
bis vor Kurzem hatten wir für die Lectotyp-Referenz im Portal die Konvention, dass ein Kurzverweis in Klammer...
Andreas Müller
01:10 PM feature request #10206 (In Progress): Add publish flag to description base
Andreas Müller

01/10/2023

11:03 PM feature request #10206: Add publish flag to description base
WGB:
Hatten wir eigentlich schon die Sache mit den Factual Datasets zur Publikation diskutiert?
Wir haben ja die...
Andreas Müller
11:02 PM feature request #10206: Add publish flag to description base
First we need to check how easy it is to use the enumset for query filtering. If it is easy we may use the enumset, o... Andreas Müller

01/09/2023

07:42 PM task #10222 (In Progress): Use DTOs for portal taxon page - first implementation for E+M
Andreas Müller
07:31 PM task #10222 (Closed): Use DTOs for portal taxon page - first implementation for E+M
... to improve performance and simplify dataportal rendering. If possible formatting should take place server side.
...
Andreas Müller
11:20 AM bug #10111: Data loss e.g. when entering type information
NaK:
das ist mir auch ein paar Mal passiert, aber so sporadisch, dass ich dachte, ich hätte nicht gespeichert. Ich...
Andreas Müller
10:29 AM feature request #10203: Show specimen sources in publications
As we will work on portal taxon pages in 5.36 this might be an issue that can be solved in 5.36. If not we will move ... Andreas Müller
10:25 AM bug #10068 (Closed): Changing focus to accepted taxon does not work
This works now. Katja Luther
10:06 AM feature request #10221 (Closed): Add form to edit the json file with cdmserver info
For users it is difficult to find and edit the json file to add a new cdm server. Therefore we should have a form in ... Katja Luther

01/06/2023

09:40 PM bug #10111: Data loss e.g. when entering type information
AM:
auch das Ticket #10111 sollte jetzt final gereviewed werden nach dem das Release jetzt draußen ist.
In dies...
Andreas Müller
09:30 PM bug #10053 (Resolved): Problems with saving of secundum references
AM to Maryam:
... Katja and I can’t reproduce. Could you please check next time you work with the TaxEditor if it ...
Andreas Müller
09:16 PM bug #10054: Changes on secundum reference are lost after changing status to basionym
Close ticket fully if Maryam does not report again until 4/23 Andreas Müller
09:16 PM bug #10054 (Resolved): Changes on secundum reference are lost after changing status to basionym
AM to Maryam:
...
As Katja and I can’t reproduce this bug anymore we would like to ask you if you can still repro...
Andreas Müller
08:55 PM bug #8953: Focus not correctly evaluated for details view when switching between names
Close in 4/23 if not reported again. Andreas Müller
08:54 PM bug #8953: Focus not correctly evaluated for details view when switching between names
AM:
ihr hattet das Problem in Ticket #8953 vor 2 Jahren beschrieben. Wir haben in diesem Bereich jetzt einiges ver...
Andreas Müller
08:49 PM bug #10191 (Closed): Error message on taxon specimen page for non-atomized specimens
This looks fine also on production so we close the ticket.
The data itself should still be cleaned up.
Andreas Müller
08:46 PM bug #8653 (Closed): NullPointerException (NPE) when focusing Taxon Name Editor
This issue was obiously not related to the import but to code changes related to preferences. The fix looks reasonabl... Andreas Müller
07:10 PM bug #8270: TermDTOs with an orderIndex are ordered in unordered term vocabularies
Is this still open? Andreas Müller
05:01 PM task #10220 (In Progress): Remove SpecimenCdmExcelImport and EndnoteImport in TaxEditor
classes and menu entries are removed, still needs some clean up (strings, comments etc) Katja Luther
02:41 PM task #10220 (Closed): Remove SpecimenCdmExcelImport and EndnoteImport in TaxEditor
mail AM:
~~~
wenn ich es richtig sehe, verwendet der Specimen CDM Excel Import noch nicht die Remoting Implementi...
Katja Luther

01/05/2023

09:15 PM task #10205: Update GBIF import to modern json library.
please also remove the .ignore entries Andreas Müller
08:16 PM feature request #6794 (In Progress): Improve term structure
Andreas Müller
08:13 PM feature request #6794 (Duplicate): Improve term structure
Andreas Müller
06:33 PM task #10216 (In Progress): Upgrade to Spring 5.x
Andreas Müller
05:52 PM bug #6407: Upgrade maven compiler plugin to latest version

I tried to handle aspectj with aspectj-maven-plugin (and remove the ant-run-plugin) in cdmlib-model
https://www.moj...
Andreas Müller
05:22 PM task #6981: Migrate to Java 11
This is maybe blocked by upgrading to maven-compiler-plugin 3.x first which has problems with aspectj handling. Andreas Müller
05:06 PM bug #8590 (Duplicate): Details view does not show data of new synonym
This is a duplicate for #10138 and has been fied in current milestone. Andreas Müller
04:57 PM bug #10068 (Resolved): Changing focus to accepted taxon does not work
fixed with commit:a5a95b645c5976. Please review. It also solves the issue that when opening the Taxon Editor the focu... Andreas Müller
03:10 PM bug #10068 (New): Changing focus to accepted taxon does not work
ok,then we keep it in 5.36 Katja Luther
02:54 PM bug #10068: Changing focus to accepted taxon does not work
Katja Luther wrote in #note-2:
> This issue seems to be solved by #10138 and/or #10186. We can remove the version or...
Andreas Müller
02:46 PM bug #10068 (Feedback): Changing focus to accepted taxon does not work
This issue seems to be solved by #10138 and/or #10186. We can remove the version or set it to the current milestone (... Katja Luther
03:22 PM bug #10080: Source Element sometimes does not appear after selecting a new designation status and after creating a new type designation
This is still an issue when changing the designation status to holotype, adding a specimen solves the problem. So we ... Katja Luther
03:21 PM bug #8953 (Resolved): Focus not correctly evaluated for details view when switching between names
We will ask users to test after release. Andreas Müller
02:41 PM bug #8953 (Feedback): Focus not correctly evaluated for details view when switching between names
I think this problem is fixed, maybe related to #10138 and #10186. We can remove the version or set it to the current... Katja Luther
03:19 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
Now it should reload after 20min (if idle) or 1h (if not idle). Maybe you can test a last time. But it should work as... Andreas Müller
01:52 PM bug #10214 (Resolved): Cache configuration for term cache not correctly initialized in taxeditor
Applied in changeset commit:taxeditor|af15e2e37989f818b9098b604242a02adf295818. Andreas Müller
12:44 PM bug #10214 (Feedback): Cache configuration for term cache not correctly initialized in taxeditor
Ahh, the reason is that CdmServiceCachingProxy overrides the CdmPermanentCache configuration Andreas Müller
12:44 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
Katja Luther wrote in #note-13:
> Andreas Müller wrote in #note-10:
> > This should be fixed. Please review.
> >
...
Andreas Müller
09:50 AM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
Andreas Müller wrote in #note-10:
> This should be fixed. Please review.
>
> The most important result should be,...
Katja Luther
03:17 PM bug #10186 (Closed): Problems with session handling in taxeditor
Further issues can be handled in the more detailed tickets. Katja Luther
03:12 PM bug #10186 (Resolved): Problems with session handling in taxeditor
Should we close this ticket and open a new one if we do further research on taxeditor sessions? I think there are a c... Andreas Müller
02:58 PM bug #10186: Problems with session handling in taxeditor
Andreas Müller wrote in #note-10:
> Katja Luther wrote in #note-5:
> > SetSelection in setFocus of TaxonNameEditorE4 ...
Katja Luther
02:57 PM bug #10219: Setting the focus to an already selected entity should not refresh the details view
Similar things happen with the SupplementalDataView. Andreas Müller
02:48 PM bug #10219: Setting the focus to an already selected entity should not refresh the details view
Actually if the name editor looses the focus and gets it back the details view still shows the details of the selecte... Katja Luther
02:47 PM bug #10219 (New): Setting the focus to an already selected entity should not refresh the details view
Katja Luther
02:51 PM bug #10138 (Closed): Details view is not updated after freetext change
Katja Luther
02:17 PM bug #10138 (Feedback): Details view is not updated after freetext change
Katja Luther wrote in #note-26:
> This is like it was before, I think there is already a ticket about it. (for examp...
Andreas Müller
01:06 PM bug #10138 (Resolved): Details view is not updated after freetext change
Katja Luther
12:20 PM bug #10138: Details view is not updated after freetext change
Andreas Müller wrote in #note-25:
> Andreas Müller wrote in #note-24:
> > Katja Luther wrote in #note-22:
> > > I jus...
Katja Luther
12:06 PM bug #10138: Details view is not updated after freetext change
Andreas Müller wrote in #note-24:
> Katja Luther wrote in #note-22:
> > I just tried out another implementation: no...
Andreas Müller
11:11 AM bug #10138: Details view is not updated after freetext change
Katja Luther wrote in #note-22:
> I just tried out another implementation: now the detailsviewer just remember that ...
Andreas Müller
11:10 AM bug #10138 (Feedback): Details view is not updated after freetext change
Katja Luther wrote in #note-21:
> The new solution disables the details view after editing the name in name editor, ...
Andreas Müller
10:54 AM bug #10138: Details view is not updated after freetext change
I just tried out another implementation: now the detailsviewer just remember that there are changes in Name Editor an... Katja Luther
09:33 AM bug #10138 (Resolved): Details view is not updated after freetext change
The new solution disables the details view after editing the name in name editor, editing the other names/taxon/synon... Katja Luther
12:58 AM bug #10138 (Feedback): Details view is not updated after freetext change
This needs to be reverted or adapted. Currently the detail view very often refreshes. This happens also in many cases... Andreas Müller

01/04/2023

11:53 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
This should be fixed. Please review.
The most important result should be, that terms are not loaded anymore when c...
Andreas Müller
11:40 PM bug #10214 (Resolved): Cache configuration for term cache not correctly initialized in taxeditor
Applied in changeset commit:cdmlib|61cf7e7af3a0e164f63cb40ec9d897783e376dca. Andreas Müller
12:24 AM bug #10214 (Feedback): Cache configuration for term cache not correctly initialized in taxeditor
This should still be handled in current target version. Andreas Müller
10:20 PM task #9207 (Duplicate): update ehcache dependency and handle hibernate-ehcache
Andreas Müller
10:10 PM task #10218 (New): Unify cache handling in CDM platform
Currently ehCache is used in different ways throughout the platform.
* transient entity cache - used by TaxEditor ...
Andreas Müller
06:27 PM task #10201 (Closed): Make synonym type an enum
Andreas Müller wrote in #note-8:
> still need to test taxeditor and fix dozer test
dozer test fixed and no proble...
Andreas Müller
04:02 PM bug #10182 (Closed): Portal does not show typespecimen for duplicated typedesignation
Looks ok now, I think we can finally close this ticket now. Andreas Müller
03:07 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-30:
> Katja Luther wrote in #note-29:
> > made code cleaning mentioned in note#23, so...
Katja Luther
02:50 PM bug #10182 (Feedback): Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-29:
> made code cleaning mentioned in note#23, so we can close this ticket.
The code ...
Andreas Müller
02:15 PM bug #10182 (Closed): Portal does not show typespecimen for duplicated typedesignation
made code cleaning mentioned in note#23, so we can close this ticket. Katja Luther
12:05 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-26:
> Andreas Müller wrote in #note-25:
> > Andreas Müller wrote in #note-22:
> > > I ...
Andreas Müller
09:16 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-24:
> I fixed the widgetIsDisposed issue already. Please review and do the other chang...
Katja Luther
09:15 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-25:
> Andreas Müller wrote in #note-22:
> > I tried to fix the ClassNotFoundException...
Katja Luther
02:05 PM feature request #10196 (Closed): Hybrid structure-state terms
works as expected now. Katja Luther
12:22 AM bug #10198 (Closed): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Andreas Müller wrote in #note-10:
> Moving in TaxEditor now works as expected.
>
> There is still an issue that o...
Andreas Müller
12:10 AM feature request #6794: Improve term structure
Issues with orderindex in existing database can be found by the following queries which search for records that have ... Andreas Müller

01/03/2023

11:52 PM bug #10111: Data loss e.g. when entering type information
After short testing I could not reproduce this issue anymore. Maybe it was fixed with #10186. However, this is not gu... Andreas Müller
11:33 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-22:
> I tried to fix the ClassNotFoundException (taxeditor:commit:384cf0c384d17e0f). S...
Andreas Müller
11:22 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
I fixed the widgetIsDisposed issue already. Please review and do the other changes. Andreas Müller
10:12 PM bug #10182 (Feedback): Portal does not show typespecimen for duplicated typedesignation
In the TaxEditor log I find multiple times
~~~
!ENTRY eu.taxeditor 2 0 2023-01-03 21:56:39.428
!MESSAGE Widget i...
Andreas Müller
05:11 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
I tried to fix the ClassNotFoundException (taxeditor:commit:384cf0c384d17e0f). Still needs to be tested. Andreas Müller
02:34 PM bug #10182 (Resolved): Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-20:
> did you put this back to InProgress on purpose?
the exception isn't fixed but...
Katja Luther
02:28 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
did you put this back to InProgress on purpose? Andreas Müller
01:29 PM bug #10182 (In Progress): Portal does not show typespecimen for duplicated typedesignation
Katja Luther
01:29 PM bug #10182 (Resolved): Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-16:
> Andreas Müller wrote in #note-14:
> > Katja Luther wrote in #note-12:
> > ...
>...
Katja Luther
01:10 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-16:
> Andreas Müller wrote in #note-14:
> > Katja Luther wrote in #note-12:
> > ...
>...
Andreas Müller
12:42 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-14:
> Katja Luther wrote in #note-12:
> ...
> > We both (AM und KL) checked the clon...
Katja Luther
12:40 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-13:
> I think the TaxEditor implementation does not use DerivedUnit.clone(). However, ...
Katja Luther
12:38 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Katja Luther wrote in #note-12:
...
> We both (AM und KL) checked the clone mechanism, but during cloning there is ...
Andreas Müller
12:37 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
I think the TaxEditor implementation does not use DerivedUnit.clone(). However, there was a bug in the clone method t... Andreas Müller
10:49 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Andreas Müller wrote in #note-5:
> Katja Luther wrote in #note-2:
> > The webservice failed because the derived uni...
Katja Luther
10:47 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
Added a check in derived unit wizard, which is used for editing specimens of type designations. Katja Luther
09:29 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
when adding a occurrenceStatus without type now an exception is thrown:
~~~
2023-01-03T09:28:35.757: http://loc...
Katja Luther
06:33 PM feature request #10202 (Closed): Allow entering specimen in fact sources in taxeditor
works as expected now Andreas Müller
05:50 PM bug #10214 (In Progress): Cache configuration for term cache not correctly initialized in taxeditor
Andreas Müller
03:58 PM feature request #10196: Hybrid structure-state terms
Katja Luther wrote in #note-17:
> Clicking on character "growth form" in Bupleurum instance results in StackOverflow...
Andreas Müller
09:13 AM feature request #10196 (Feedback): Hybrid structure-state terms
Clicking on character "growth form" in Bupleurum instance results in StackOverflowException (in DescriptiveDataSet Ed... Katja Luther

12/31/2022

11:55 AM task #3408 (In Progress): replace spring-modules-cache by up to date implementation
The fix did not work. See failing jenkins tests with:
~~~
Caused by: org.springframework.beans.PropertyBatchUpdat...
Andreas Müller

12/27/2022

06:13 PM feature request #10058: Further improve specimen page (factual data, extensions,
additional issues for specimen page:
mail NK:
Ich weiß nicht ob die 2-Spaltigkeit bei Preserved specimen bis An...
Katja Luther
03:53 PM task #9359 (Closed): Update cdmlib, taxeditor, cdmserver etc. dependencies
All open issues moved to upgrade 2023 #10055 Andreas Müller
02:16 PM task #10216 (In Progress): Upgrade to Spring 5.x
copied from #10055
there is a local feature branch "feature_10216_spring5"
Issues:
* unitils support (could ...
Andreas Müller
01:47 PM task #3408 (Resolved): replace spring-modules-cache by up to date implementation
Applied in changeset commit:cdmlib|cbe13549e0a30b0dd4e3553cb48c7a34ead84e3b. Andreas Müller

12/26/2022

01:06 PM task #10215 (New): Updates, upgrades and cleanup 2024
All tasks that should be considered during the 2024 updates, upgrades and cleanup sprint.
Upgrades to latest versi...
Andreas Müller

12/22/2022

11:02 AM bug #10138: Details view is not updated after freetext change
Katja Luther wrote in #note-18:
> Andreas Müller wrote in #note-16:
> > As far as I can see the event throwing not ...
Andreas Müller

12/21/2022

02:21 PM bug #8381 (Closed): Closing the details view throws widget is disposed exception
This exception is thrown by our own code, so I remove the try catch because then the WidgetIsDisposedExcpetion will b... Katja Luther
01:19 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
Also it is unclear why single instances of CdmServiceCachingProxy to all use the static DEFAULT_CACHE_NAME from the b... Andreas Müller
01:13 PM bug #10214 (Closed): Cache configuration for term cache not correctly initialized in taxeditor
This results in short time-to-live and time-to-idle values (and maybe others) as values are taken from default ehCach... Andreas Müller
10:42 AM bug #10211 (Closed): Add categorical and quantitative data to cdm light export
export looks ok. Katja Luther
10:35 AM bug #8591 (In Progress): Multiple representations problem on setting synonym as basionym
Katja Luther
10:32 AM bug #10138 (In Progress): Details view is not updated after freetext change
Andreas Müller wrote in #note-16:
> As far as I can see the event throwing not happens additionally to the event thr...
Katja Luther
10:09 AM feature request #10202 (Resolved): Allow entering specimen in fact sources in taxeditor
Andreas Müller wrote in #note-11:
> When recreating details view the state is not yet evaluated. So if a reference e...
Katja Luther

12/20/2022

10:50 PM bug #10204 (Closed): GBIF search does not work due to missing json-lib
According to KL this works now. Reverting 4 dependencies is handled in #10205 so we can close this ticket. Andreas Müller
10:45 PM feature request #10199 (Closed): Implement multi-select for terms in term vocabulary editor
Seems to work now as expected Andreas Müller
02:10 PM bug #10138 (Feedback): Details view is not updated after freetext change
Can you please check this in detail. Andreas Müller
02:08 PM bug #10138: Details view is not updated after freetext change
As far as I can see the event throwing not happens additionally to the event thrown by selection change. We need to c... Andreas Müller
01:31 PM feature request #10202 (Feedback): Allow entering specimen in fact sources in taxeditor
When recreating details view the state is not yet evaluated. So if a reference exists already it is still possible to... Andreas Müller
11:07 AM feature request #10202 (Resolved): Allow entering specimen in fact sources in taxeditor
Andreas Müller wrote in #note-9:
> Katja Luther wrote in #note-8:
> > Andreas Müller wrote in #note-7:
> > > This ...
Katja Luther
10:47 AM feature request #10202: Allow entering specimen in fact sources in taxeditor
Katja Luther wrote in #note-8:
> Andreas Müller wrote in #note-7:
> > This generally works. During review I only wo...
Andreas Müller
09:39 AM feature request #10202: Allow entering specimen in fact sources in taxeditor
Andreas Müller wrote in #note-7:
> This generally works. During review I only wonder where to put it and how to hand...
Katja Luther
12:44 PM bug #10211 (Resolved): Add categorical and quantitative data to cdm light export
Andreas Müller
09:25 AM feature request #10212 (Closed): Add usePlural to StateData
adapted formatters in cdmlib. I guess this can be closed. Andreas Müller
09:02 AM feature request #10213 (New): Adapt taxeditor to use StateData.usePlural
see #10212
In TaxEditor we may show both normal and plural label in combobox as 2 entries if a plural form exists....
Andreas Müller

12/19/2022

04:50 PM feature request #10212 (Resolved): Add usePlural to StateData
Applied in changeset commit:cdmlib|3a935f11615fe5bb21d9e1bd00858d057cb1ba77. Andreas Müller
04:03 PM feature request #10212 (In Progress): Add usePlural to StateData
Andreas Müller
04:03 PM feature request #10212 (Closed): Add usePlural to StateData
To allow having only 1 state/structure for the same thing. But only distinguish correct representation in StateData b... Andreas Müller
03:39 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Moving in TaxEditor now works as expected.
There is still an issue that orderindex misses some numbers in between ...
Andreas Müller
01:55 PM bug #10198 (Resolved): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
I debugged now in TaxEditor with rem_conf_am NamedArea voc "Test sorting". Moving "Europe2" below Land3 (eclipse View... Andreas Müller
01:32 PM bug #10198 (Feedback): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Katja Luther wrote in #note-7:
> Also tested move and delete in TaxEditor.
> @AM: Please review the move with posit...
Andreas Müller
03:31 PM bug #10191: Error message on taxon specimen page for non-atomized specimens
Looks fine.
We should do a final review on production after release.
Andreas Müller
01:21 PM bug #10191 (Resolved): Error message on taxon specimen page for non-atomized specimens
For unatomized field unit informations the label covers only the rows of field unit information, please review. Katja Luther
03:27 PM feature request #10194: Allow specimens as source for factual data
Added constraint that either reference or specimen can have a value but not both. Andreas Müller
02:32 PM feature request #10202 (Feedback): Allow entering specimen in fact sources in taxeditor
This generally works. During review I only wonder where to put it and how to handle it best.
My suggestion is to m...
Andreas Müller
02:22 PM feature request #10202: Allow entering specimen in fact sources in taxeditor
Katja Luther wrote in #note-3:
> Added the field, the preference is still missing.
This seems to be implemented i...
Andreas Müller
01:46 PM bug #10211 (Feedback): Add categorical and quantitative data to cdm light export
Code looks ok though using "new FormatKey[] {}" is not necessary I think. Better use null (this is all work-in-progre... Andreas Müller
12:18 PM bug #10211: Add categorical and quantitative data to cdm light export
Andreas Müller wrote in #note-1:
> For review?
Yes, please review.
Katja Luther
11:48 AM bug #10211 (Resolved): Add categorical and quantitative data to cdm light export
For review? Andreas Müller
11:43 AM bug #10211 (Closed): Add categorical and quantitative data to cdm light export
Categorical and quantitative data are still missing in cdmLight export, this should be implemented. Katja Luther
01:27 PM bug #10204: GBIF search does not work due to missing json-lib
There is still this error message:
net.sf.ezmorph.Morpher cannot be found by eu.etaxonomy.taxeditor.cdmlib_5.35.0....
Katja Luther
11:58 AM bug #10192 (Closed): External Links do not work in E+M
The answers of the users were all that the new solution is ok or even better, so we can close this ticket. Katja Luther
11:19 AM feature request #10133: Improve ontology state vocabularies
For moving states to structures I used:
~~~
UPDATE DefinedTermBase
SET vocabulary_id = 216, titleCache = REPLACE (ti...
Andreas Müller
11:17 AM feature request #10133: Improve ontology state vocabularies
State vocabularies are currently not correctly ordered because the vocs are not OrderedTermVocs:
~~~
SELECT *
FR...
Andreas Müller
11:09 AM feature request #10210 (New): UI for configuring condensed distribution string via separate parameters
Currently one can only choose from the 2 recipies (E+M, Cuba) but cdmlib allows already detailed configuration (see C... Andreas Müller
11:05 AM bug #9987: Handle areas of different vocabularies in comparator
Additionally we should offer to use term trees instead of vocabularies. Andreas Müller
10:24 AM bug #6163: can't add media to observation/specimen anymore
Is this still an open issue?
Andreas Müller

12/17/2022

12:13 PM task #10208 (New): only use cacher for static terms
In DefinedTermBase we have cacher and termMap for static access to terms. We should unify this.
The TermLoader sho...
Andreas Müller
01:31 AM feature request #10194 (Closed): Allow specimens as source for factual data
Andreas Müller
12:49 AM bug #10207 (New): Out-Of-Memory error when working with vocabularies
NoK:
nach einer Weile des Arbeitens im Vokabular geht die Anwendung out-of-memory; die meisten Änderungen werden a...
Andreas Müller

12/16/2022

08:47 PM feature request #10206 (Closed): Add publish flag to description base
WGB:
wir haben den Fall von Rovaeanthus strigosus (Benth.) Borhidi
Dort gibt es jetzt 3 factual datasets:

![]...
Andreas Müller
06:30 PM bug #10197 (In Progress): Show empty page for delay while updating
Andreas Müller
06:28 PM feature request #9584 (Closed): specimen page: character data displayed in details section
Andreas Müller
05:32 PM feature request #9584: specimen page: character data displayed in details section
demo2 portals using the develop branch now, so you can test here: https://ws2.cybertaxonomy.org/dataportal/greece_bup... Katja Luther
04:44 PM bug #10138 (Resolved): Details view is not updated after freetext change
this should be fixed, please review. Katja Luther
02:37 PM bug #10138 (Feedback): Details view is not updated after freetext change
This is probably fixed but not yet commited. Andreas Müller
02:55 PM bug #8591 (Feedback): Multiple representations problem on setting synonym as basionym
If we don't manage for 5.35 please set back to new or inProgress. Andreas Müller
02:52 PM bug #8381 (Resolved): Closing the details view throws widget is disposed exception
Andreas Müller
02:47 PM bug #10053 (In Progress): Problems with saving of secundum references
KL could not reproduce anymore. I will test if I can reproduce. Andreas Müller
02:44 PM feature request #10199 (Resolved): Implement multi-select for terms in term vocabulary editor
Katja Luther
02:44 PM feature request #10199 (In Progress): Implement multi-select for terms in term vocabulary editor
Katja Luther
02:42 PM bug #10162: Problems when deleting names involved in a namerelationship
We need to check the delete name function but it is not clear if this happened really during name delete or due to in... Andreas Müller
02:33 PM bug #10111 (Resolved): Data loss e.g. when entering type information
I will try to reproduce Andreas Müller
02:27 PM bug #10054 (In Progress): Changes on secundum reference are lost after changing status to basionym
KL could not reproduce anymore. I will test if I can reproduce. Andreas Müller
02:25 PM bug #10186: Problems with session handling in taxeditor
Katja Luther wrote in #note-5:
> SetSelection in setFocus of TaxonNameEditorE4 is not necessary and yields to a seco...
Andreas Müller
02:21 PM task #10189 (Closed): Split CdmApplicationController into repository and application part
Andreas Müller
02:19 PM task #9975 (Resolved): Create new UML diagramms for the CDM
please review Andreas Müller
02:17 PM bug #10190 (Closed): Invalid argument supplied for foreach() in order_fieldUnitDtos_by_date_and_type()
Andreas Müller
02:15 PM feature request #10202 (Resolved): Allow entering specimen in fact sources in taxeditor
Andreas Müller
09:50 AM feature request #10202 (In Progress): Allow entering specimen in fact sources in taxeditor
Andreas Müller
09:03 AM feature request #10202: Allow entering specimen in fact sources in taxeditor
Added the field, the preference is still missing. Katja Luther
02:06 PM feature request #10196: Hybrid structure-state terms
Can you please review. When done we can create a ticket for the remaining open issue. Andreas Müller
01:54 PM bug #10192: External Links do not work in E+M
It works now, but it changed from using popups to opening a new tab which is maybe not wanted (there might be a reaso... Andreas Müller
01:14 PM bug #10192: External Links do not work in E+M
Andreas Müller wrote in #note-5:
> How can I test this? It is not yet pushed to production, or? And on test the upda...
Katja Luther
01:42 PM bug #10204 (Resolved): GBIF search does not work due to missing json-lib
Should be fixed. Please review finally on nightly.
Json update moved to #10205
Andreas Müller
01:34 PM bug #10204 (In Progress): GBIF search does not work due to missing json-lib
probably fixed by adding missing dependencies, but we should upgrade to a more modern json framework Andreas Müller
01:37 PM task #10205 (Closed): Update GBIF import to modern json library.
... after fixing do not forget to remove 4 dependencies again. See commit:taxeditor|f60a1e5ffb4425d1f Andreas Müller
08:11 AM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Also tested move and delete in TaxEditor.
@AM: Please review the move with position method.
Katja Luther

12/15/2022

03:25 PM bug #10204 (Closed): GBIF search does not work due to missing json-lib
The Gbif search does not work in editor because some of the removed libraries are needed.
Katja Luther

12/14/2022

10:54 PM feature request #10196: Hybrid structure-state terms
This is more or less fixed now and tested in Character editor and in matrix.
Not yet tested in PolytomousKeys(need...
Andreas Müller
11:30 AM feature request #10196 (Resolved): Hybrid structure-state terms
This should be mostly ready. Still need to handle open issues and test in TaxEditor (add voc to characters and in mat... Andreas Müller
08:42 PM bug #10191: Error message on taxon specimen page for non-atomized specimens
NoK:
https://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/b335ceee-d6c1-4c93-841d-3b4bd27...
Andreas Müller
11:28 AM bug #10191 (Feedback): Error message on taxon specimen page for non-atomized specimens
This is definetely much better than before as the error messages are not shown anymore and the fields are filled with... Andreas Müller
01:49 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
Katja Luther wrote in #note-5:
> Andreas Müller wrote in #note-4:
> > Can you please review?
> >
> > This should...
Katja Luther
11:45 AM bug #10190 (Feedback): Invalid argument supplied for foreach() in order_fieldUnitDtos_by_date_and_type()
Generally this is fixed. The result can be seen on test e.g. at https://test.e-taxonomy.eu/dataportal/preview/cichori... Andreas Müller
11:04 AM bug #10192 (Feedback): External Links do not work in E+M
How can I test this? It is not yet pushed to production, or? And on test the updates are not yet installed as far as ... Andreas Müller
10:41 AM feature request #10194: Allow specimens as source for factual data
I guess we can close this ticket. Can you please do final review. Please also consider implementation in TaxEditor (#... Andreas Müller
10:39 AM feature request #10203 (New): Show specimen sources in publications
... (dataportal and print publication)
for details see #10194
Andreas Müller
10:36 AM feature request #10202 (Closed): Allow entering specimen in fact sources in taxeditor
... as an alternative to references. This was implemented in the model in #10194.
Maybe we should have a preferenc...
Andreas Müller
01:33 AM task #10201 (Resolved): Make synonym type an enum
still need to test taxeditor and fix dozer test Andreas Müller
 

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