Activity
From 12/05/2022 to 01/03/2023
01/03/2023
- 11:52 PM bug #10111: Data loss e.g. when entering type information
- After short testing I could not reproduce this issue anymore. Maybe it was fixed with #10186. However, this is not gu...
- 11:33 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-22:
> I tried to fix the ClassNotFoundException (taxeditor:commit:384cf0c384d17e0f). S... - 11:22 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- I fixed the widgetIsDisposed issue already. Please review and do the other changes.
- 10:12 PM bug #10182 (Feedback): Portal does not show typespecimen for duplicated typedesignation
- In the TaxEditor log I find multiple times
~~~
!ENTRY eu.taxeditor 2 0 2023-01-03 21:56:39.428
!MESSAGE Widget i... - 05:11 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- I tried to fix the ClassNotFoundException (taxeditor:commit:384cf0c384d17e0f). Still needs to be tested.
- 02:34 PM bug #10182 (Resolved): Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-20:
> did you put this back to InProgress on purpose?
the exception isn't fixed but... - 02:28 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- did you put this back to InProgress on purpose?
- 01:29 PM bug #10182 (In Progress): Portal does not show typespecimen for duplicated typedesignation
- 01:29 PM bug #10182 (Resolved): Portal does not show typespecimen for duplicated typedesignation
- Katja Luther wrote in #note-16:
> Andreas Müller wrote in #note-14:
> > Katja Luther wrote in #note-12:
> > ...
>... - 01:10 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Katja Luther wrote in #note-16:
> Andreas Müller wrote in #note-14:
> > Katja Luther wrote in #note-12:
> > ...
>... - 12:42 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-14:
> Katja Luther wrote in #note-12:
> ...
> > We both (AM und KL) checked the clon... - 12:40 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-13:
> I think the TaxEditor implementation does not use DerivedUnit.clone(). However, ... - 12:38 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Katja Luther wrote in #note-12:
...
> We both (AM und KL) checked the clone mechanism, but during cloning there is ... - 12:37 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- I think the TaxEditor implementation does not use DerivedUnit.clone(). However, there was a bug in the clone method t...
- 10:49 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Andreas Müller wrote in #note-5:
> Katja Luther wrote in #note-2:
> > The webservice failed because the derived uni... - 10:47 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Added a check in derived unit wizard, which is used for editing specimens of type designations.
- 09:29 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- when adding a occurrenceStatus without type now an exception is thrown:
~~~
2023-01-03T09:28:35.757: http://loc... - 11:21 PM Revision fdd9dc5b (taxeditor): ref #10182 fix widget is disposed in OccurrenceStatusElement
- 10:25 PM Revision 6b92893f (cdmlib): add OccurrenceStatus to PermissionClass
- 10:15 PM Revision edc115e3 (cdmlib): add DerivationEvent to PermissionClass
- 10:07 PM Revision 6f665ff7 (taxeditor): cleanup
- 06:33 PM feature request #10202 (Closed): Allow entering specimen in fact sources in taxeditor
- works as expected now
- 05:50 PM bug #10214 (In Progress): Cache configuration for term cache not correctly initialized in taxeditor
- 05:04 PM Revision 0070dfe4 (taxeditor): cleanup
- 05:04 PM Revision 384cf0c3 (taxeditor): ref #10182 try to fix ClassNotFoundException for javax.validation.ConstraintViolation
- 03:58 PM feature request #10196: Hybrid structure-state terms
- Katja Luther wrote in #note-17:
> Clicking on character "growth form" in Bupleurum instance results in StackOverflow... - 09:13 AM feature request #10196 (Feedback): Hybrid structure-state terms
- Clicking on character "growth form" in Bupleurum instance results in StackOverflowException (in DescriptiveDataSet Ed...
- 03:54 PM Revision ea76aec6 (cdmlib): ref #10196 fix findByTermType
- 03:54 PM Revision bf502b97 (cdmlib): cleanup
- 03:53 PM Revision 0743ef0c (cdmlib): commit only
- 01:15 PM Revision 9a095fa3 (taxeditor): ref #10182: mark type red if empty
- 12:29 PM Revision 0ec25996 (cdmlib): javadoc
- 12:27 PM Revision 98ba42ca (cdmlib): ref #2506, ref #10182 fix clone method for DerivedUnit.status
- 12:26 PM Revision 0a403690 (cdmlib): cleanup
- 11:02 AM Revision 638a7036 (taxeditor): fix NPE
- 10:42 AM Revision fbbfeef9 (taxeditor): ref #10182: do not allow to save derived unit without occurrence status type in wizard
12/31/2022
- 11:55 AM task #3408 (In Progress): replace spring-modules-cache by up to date implementation
- The fix did not work. See failing jenkins tests with:
~~~
Caused by: org.springframework.beans.PropertyBatchUpdat... - 11:48 AM Revision 9a7605ff (cdmlib): Revert " fix #3408, ref #9359 remove springmodules dependency by workaround in AbstractOaiPmhController"
- This reverts commit cbe13549e0a30b0dd4e3553cb48c7a34ead84e3b.
12/29/2022
- 12:12 PM Revision c2c53e50 (cdmlib): cleanup
12/27/2022
- 09:15 PM Revision e2871450 (cdmlib): ref #10216 fix classification test path
- 07:20 PM Revision 0a954e76 (taxeditor): adapt taxeditor to changes in CdmRemoteCacheManager
- 07:07 PM Revision ef53419f (cdmlib): cleanup
- 06:13 PM feature request #10058: Further improve specimen page (factual data, extensions,
- additional issues for specimen page:
mail NK:
Ich weiß nicht ob die 2-Spaltigkeit bei Preserved specimen bis An... - 04:49 PM Revision 24d26860 (cdmlib): cleanup and adapt spelling suggestion to spring-hibernate5 dao
- 03:53 PM task #9359 (Closed): Update cdmlib, taxeditor, cdmserver etc. dependencies
- All open issues moved to upgrade 2023 #10055
- 02:16 PM task #10216 (In Progress): Upgrade to Spring 5.x
- copied from #10055
there is a local feature branch "feature_10216_spring5"
Issues:
* unitils support (could ... - 01:47 PM task #3408 (Resolved): replace spring-modules-cache by up to date implementation
- Applied in changeset commit:cdmlib|cbe13549e0a30b0dd4e3553cb48c7a34ead84e3b.
- 01:37 PM Revision 3c314956 (cdmlib): cleanup
- 01:36 PM Revision cbe13549 (cdmlib): fix #3408, ref #9359 remove springmodules dependency by workaround in AbstractOaiPmhController
- * fix fully after upgrading to spring 5.x and EhCache 3.x
- 12:33 PM Revision cd142a4a (cdmlib): cleanup
12/26/2022
- 11:58 PM Revision 6745191b (cdmlib): cleanup
- 10:17 PM Revision 6f2fdbed (cdmlib): cleanup
- 10:00 PM Revision 106be861 (cdmlib): cleanup
- 09:54 PM Revision d895f2bb (cdmlib): cleanup
- 08:17 PM Revision 848a0d7d (cdmlib): cleanup
- 08:11 PM Revision 9c90cb9c (taxeditor): fix logging in service proxy
- 08:00 PM Revision 052b7a05 (cdmlib-apps): adapt app-import and pesi to latest changes in cdmlib
- 07:59 PM Revision 6bbb9326 (cdmlib-apps): cleanup
- 07:43 PM Revision 71477484 (taxeditor): cleanup
- 07:42 PM Revision b01f9126 (cdm-vaadin): cleanup
- 07:34 PM Revision 2f3aa2b9 (cdmlib): cleanup
- 04:21 PM Revision a6261600 (cdmlib): cleanup
- 02:00 PM Revision 51a4c26c (cdmlib): cleanup
- 01:09 PM Revision d74319f1 (cdmlib): cleanup and javadoc
- 01:06 PM task #10215 (New): Updates, upgrades and cleanup 2024
- All tasks that should be considered during the 2024 updates, upgrades and cleanup sprint.
Upgrades to latest versi...
12/23/2022
- 12:27 AM Revision 6f08293c (cdmlib): cleanup
12/22/2022
- 11:02 AM bug #10138: Details view is not updated after freetext change
- Katja Luther wrote in #note-18:
> Andreas Müller wrote in #note-16:
> > As far as I can see the event throwing not ...
12/21/2022
- 02:27 PM Revision fef39755 (taxeditor): ref #10138: handle selection of empty media or factual data view
- 02:21 PM bug #8381 (Closed): Closing the details view throws widget is disposed exception
- This exception is thrown by our own code, so I remove the try catch because then the WidgetIsDisposedExcpetion will b...
- 01:19 PM bug #10214: Cache configuration for term cache not correctly initialized in taxeditor
- Also it is unclear why single instances of CdmServiceCachingProxy to all use the static DEFAULT_CACHE_NAME from the b...
- 01:13 PM bug #10214 (Resolved): Cache configuration for term cache not correctly initialized in taxeditor
- This results in short time-to-live and time-to-idle values (and maybe others) as values are taken from default ehCach...
- 11:43 AM Revision 14473bb6 (taxeditor): cleanup and renaming for caching
- 11:19 AM Revision 4a718660 (cdm-vaadin): cleanup and renaming for caching
- 11:18 AM Revision 7035cc5a (cdmlib): cleanup and renaming for caching
- 10:42 AM bug #10211 (Closed): Add categorical and quantitative data to cdm light export
- export looks ok.
- 10:41 AM Revision cf3f15d3 (cdmlib): ref #10211: remove new FormatKey[] {}
- 10:35 AM bug #8591 (In Progress): Multiple representations problem on setting synonym as basionym
- 10:32 AM bug #10138 (In Progress): Details view is not updated after freetext change
- Andreas Müller wrote in #note-16:
> As far as I can see the event throwing not happens additionally to the event thr... - 10:09 AM feature request #10202 (Resolved): Allow entering specimen in fact sources in taxeditor
- Andreas Müller wrote in #note-11:
> When recreating details view the state is not yet evaluated. So if a reference e... - 10:08 AM Revision 57204e91 (taxeditor): ref #10202: disable reference or specimen selection
- 09:47 AM Revision 114109ef (cdmlib): ref #10211: minor
- 12:03 AM Revision 20cbb1bf (taxeditor): cleanup
- 12:01 AM Revision fbd332d3 (cdmlib): cleanup
12/20/2022
- 10:50 PM bug #10204 (Closed): GBIF search does not work due to missing json-lib
- According to KL this works now. Reverting 4 dependencies is handled in #10205 so we can close this ticket.
- 10:45 PM feature request #10199 (Closed): Implement multi-select for terms in term vocabulary editor
- Seems to work now as expected
- 03:23 PM Revision ec4e915f (taxeditor): ref #10186 fix incorrect isInDelay handling in SelectionDelay
- 02:10 PM bug #10138 (Feedback): Details view is not updated after freetext change
- Can you please check this in detail.
- 02:08 PM bug #10138: Details view is not updated after freetext change
- As far as I can see the event throwing not happens additionally to the event thrown by selection change. We need to c...
- 02:02 PM Revision 94fccb8a (taxeditor): ref #10138 disable REFRESH_DETAILS
- 02:02 PM Revision 253231ca (taxeditor): cleanup
- 01:31 PM feature request #10202 (Feedback): Allow entering specimen in fact sources in taxeditor
- When recreating details view the state is not yet evaluated. So if a reference exists already it is still possible to...
- 11:07 AM feature request #10202 (Resolved): Allow entering specimen in fact sources in taxeditor
- Andreas Müller wrote in #note-9:
> Katja Luther wrote in #note-8:
> > Andreas Müller wrote in #note-7:
> > > This ... - 10:47 AM feature request #10202: Allow entering specimen in fact sources in taxeditor
- Katja Luther wrote in #note-8:
> Andreas Müller wrote in #note-7:
> > This generally works. During review I only wo... - 09:39 AM feature request #10202: Allow entering specimen in fact sources in taxeditor
- Andreas Müller wrote in #note-7:
> This generally works. During review I only wonder where to put it and how to hand... - 01:13 PM Revision c042e8ee (cdmlib): ref #10182, ref #2506 add notNull to OccurrenceStatus.type to avoid meaningless status
- 12:44 PM bug #10211 (Resolved): Add categorical and quantitative data to cdm light export
- 12:19 PM Revision 40ee2212 (taxeditor): ref #10204, ref #9359 add beanutils and commons-collections to taxeditor buildproperties again -continue
- 11:48 AM Revision 387a5e68 (taxeditor): ref #10204, ref #9359 add beanutils and commons-collections to taxeditor buildproperties again
- 10:58 AM Revision beab159a (taxeditor): ref #10204, ref #9359 add beanutils and commons-collections to taxeditor pom again
- 10:23 AM Revision 55d0a6a4 (cdmlib): Add referencing object formatter for term nodes
- 09:45 AM Revision 446b26b9 (taxeditor): ref #10202: disable specimen selection or reference selection if the other possibility is already used
- 09:25 AM feature request #10212 (Closed): Add usePlural to StateData
- adapted formatters in cdmlib. I guess this can be closed.
- 09:24 AM Revision 49ab0cec (cdmlib): ref #10201 remove SynonymType.csv
- 09:24 AM Revision aa1e840e (cdmlib): ref #10212 adapt formatters to usePlural
- 09:02 AM feature request #10213 (New): Adapt taxeditor to use StateData.usePlural
- see #10212
In TaxEditor we may show both normal and plural label in combobox as 2 entries if a plural form exists.... - 08:54 AM Revision d6f98023 (cdmlib): ref #10201 add vocabulary removal for synonym types
- 08:49 AM Revision df6f5a8b (taxeditor): ref #10204, ref #9359 add ezmorph to taxeditor pom again
- 06:30 AM Revision 4633b33a (cdmlib): cleanup
- 06:22 AM Revision 6d38d5c2 (cdmlib): cleanup
12/19/2022
- 09:33 PM Revision 611f5f1f (taxeditor): ref #10204, ref #9359 add json-lib to taxeditor pom again
- 04:52 PM Revision 35a9827b (cdm-vaadin): ref #10212 update test H2 for vaadin
- 04:51 PM Revision d33badd8 (taxeditor): ref #10212 update test H2 for taxeditor
- 04:50 PM feature request #10212 (Resolved): Add usePlural to StateData
- Applied in changeset commit:cdmlib|3a935f11615fe5bb21d9e1bd00858d057cb1ba77.
- 04:03 PM feature request #10212 (In Progress): Add usePlural to StateData
- 04:03 PM feature request #10212 (Closed): Add usePlural to StateData
- To allow having only 1 state/structure for the same thing. But only distinguish correct representation in StateData b...
- 04:50 PM Revision 3a935f11 (cdmlib): fix #10212 add usePlural to StateData
- 03:54 PM Revision 9db3e365 (cdmlib): ref #10194 fix FullCoverageDataGenerator for new constraint
- 03:39 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Moving in TaxEditor now works as expected.
There is still an issue that orderindex misses some numbers in between ... - 01:55 PM bug #10198 (Resolved): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- I debugged now in TaxEditor with rem_conf_am NamedArea voc "Test sorting". Moving "Europe2" below Land3 (eclipse View...
- 01:32 PM bug #10198 (Feedback): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Katja Luther wrote in #note-7:
> Also tested move and delete in TaxEditor.
> @AM: Please review the move with posit... - 03:31 PM bug #10191: Error message on taxon specimen page for non-atomized specimens
- Looks fine.
We should do a final review on production after release. - 01:21 PM bug #10191 (Resolved): Error message on taxon specimen page for non-atomized specimens
- For unatomized field unit informations the label covers only the rows of field unit information, please review.
- 03:27 PM feature request #10194: Allow specimens as source for factual data
- Added constraint that either reference or specimen can have a value but not both.
- 03:26 PM Revision df718639 (cdmlib): ref #10194 add either reference or specimen constraint
- 03:24 PM Revision a17b3f58 (cdmlib): cleanup
- 02:32 PM feature request #10202 (Feedback): Allow entering specimen in fact sources in taxeditor
- This generally works. During review I only wonder where to put it and how to handle it best.
My suggestion is to m... - 02:22 PM feature request #10202: Allow entering specimen in fact sources in taxeditor
- Katja Luther wrote in #note-3:
> Added the field, the preference is still missing.
This seems to be implemented i... - 02:04 PM Revision 2e748910 (cdmlib): ref #10198 revert 6b68bfb9 (before and after handling in moveTerm)
- 02:03 PM Revision 4356940e (cdmlib): ref #10198 use more intuitive parameter names and cleanup
- 01:46 PM bug #10211 (Feedback): Add categorical and quantitative data to cdm light export
- Code looks ok though using "new FormatKey[] {}" is not necessary I think. Better use null (this is all work-in-progre...
- 12:18 PM bug #10211: Add categorical and quantitative data to cdm light export
- Andreas Müller wrote in #note-1:
> For review?
Yes, please review. - 11:48 AM bug #10211 (Resolved): Add categorical and quantitative data to cdm light export
- For review?
- 11:43 AM bug #10211 (Closed): Add categorical and quantitative data to cdm light export
- Categorical and quantitative data are still missing in cdmLight export, this should be implemented.
- 01:41 PM Revision 8369bf53 (taxeditor): ref #10204: minor
- 01:27 PM bug #10204: GBIF search does not work due to missing json-lib
- There is still this error message:
net.sf.ezmorph.Morpher cannot be found by eu.etaxonomy.taxeditor.cdmlib_5.35.0.... - 01:07 PM Revision 8a2d7112 (cdm-dataportal): ref #10191: for not atomized field unit data, label should cover only the fieldunit rows - continue
- 12:37 PM Revision cfc50709 (cdm-dataportal): ref #10191: for not atomized field unit data, label should cover only the fieldunit rows
- 12:17 PM Revision 2c701369 (cdmlib): cleanup
- 12:12 PM Revision 73afc4bc (cdmlib): cleanup
- 11:58 AM bug #10192 (Closed): External Links do not work in E+M
- The answers of the users were all that the new solution is ok or even better, so we can close this ticket.
- 11:44 AM Revision afdf0ae6 (cdmlib): ref #10211: add categorical and quantitative data to cdmlight export
- 11:19 AM feature request #10133: Improve ontology state vocabularies
- For moving states to structures I used:
~~~
UPDATE DefinedTermBase
SET vocabulary_id = 216, titleCache = REPLACE (ti... - 11:17 AM feature request #10133: Improve ontology state vocabularies
- State vocabularies are currently not correctly ordered because the vocs are not OrderedTermVocs:
~~~
SELECT *
FR... - 11:09 AM feature request #10210 (New): UI for configuring condensed distribution string via separate parameters
- Currently one can only choose from the 2 recipies (E+M, Cuba) but cdmlib allows already detailed configuration (see C...
- 11:05 AM bug #9987: Handle areas of different vocabularies in comparator
- Additionally we should offer to use term trees instead of vocabularies.
- 10:56 AM Revision 7b092ee8 (taxeditor): minor
- 10:33 AM Revision cf8302dc (taxeditor): add warning that taxa will be deleted with all factual data
- 10:24 AM bug #6163: can't add media to observation/specimen anymore
- Is this still an open issue?
12/17/2022
- 12:13 PM task #10208 (New): only use cacher for static terms
- In DefinedTermBase we have cacher and termMap for static access to terms. We should unify this.
The TermLoader sho... - 01:31 AM feature request #10194 (Closed): Allow specimens as source for factual data
- 12:49 AM bug #10207 (New): Out-Of-Memory error when working with vocabularies
- NoK:
nach einer Weile des Arbeitens im Vokabular geht die Anwendung out-of-memory; die meisten Änderungen werden a...
12/16/2022
- 08:47 PM feature request #10206 (Closed): Add publish flag to description base
- WGB:
wir haben den Fall von Rovaeanthus strigosus (Benth.) Borhidi
Dort gibt es jetzt 3 factual datasets:
![]... - 06:30 PM bug #10197 (In Progress): Show empty page for delay while updating
- 06:28 PM feature request #9584 (Closed): specimen page: character data displayed in details section
- 05:32 PM feature request #9584: specimen page: character data displayed in details section
- demo2 portals using the develop branch now, so you can test here: https://ws2.cybertaxonomy.org/dataportal/greece_bup...
- 04:54 PM Revision fee81e58 (taxeditor): temporary revert the removal of json library
- 04:44 PM bug #10138 (Resolved): Details view is not updated after freetext change
- this should be fixed, please review.
- 02:37 PM bug #10138 (Feedback): Details view is not updated after freetext change
- This is probably fixed but not yet commited.
- 04:33 PM Revision e751faa2 (taxeditor): ref #10138: after parsing send event to update the details view - continue
- 04:23 PM Revision 0b449ec9 (taxeditor): code cleaning
- 04:21 PM Revision e5c1cf57 (taxeditor): more information and better about specimen in gbif search view
- 04:19 PM Revision 76d3226c (taxeditor): ref #10138: after parsing send event to update the details view
- 02:55 PM bug #8591 (Feedback): Multiple representations problem on setting synonym as basionym
- If we don't manage for 5.35 please set back to new or inProgress.
- 02:52 PM bug #8381 (Resolved): Closing the details view throws widget is disposed exception
- 02:47 PM bug #10053 (In Progress): Problems with saving of secundum references
- KL could not reproduce anymore. I will test if I can reproduce.
- 02:44 PM feature request #10199 (Resolved): Implement multi-select for terms in term vocabulary editor
- 02:44 PM feature request #10199 (In Progress): Implement multi-select for terms in term vocabulary editor
- 02:42 PM bug #10162: Problems when deleting names involved in a namerelationship
- We need to check the delete name function but it is not clear if this happened really during name delete or due to in...
- 02:33 PM bug #10111 (Resolved): Data loss e.g. when entering type information
- I will try to reproduce
- 02:27 PM bug #10054 (In Progress): Changes on secundum reference are lost after changing status to basionym
- KL could not reproduce anymore. I will test if I can reproduce.
- 02:25 PM bug #10186: Problems with session handling in taxeditor
- Katja Luther wrote in #note-5:
> SetSelection in setFocus of TaxonNameEditorE4 is not necessary and yields to a seco... - 02:21 PM task #10189 (Closed): Split CdmApplicationController into repository and application part
- 02:19 PM task #9975 (Resolved): Create new UML diagramms for the CDM
- please review
- 02:17 PM bug #10190 (Closed): Invalid argument supplied for foreach() in order_fieldUnitDtos_by_date_and_type()
- 02:15 PM feature request #10202 (Resolved): Allow entering specimen in fact sources in taxeditor
- 09:50 AM feature request #10202 (In Progress): Allow entering specimen in fact sources in taxeditor
- 09:03 AM feature request #10202: Allow entering specimen in fact sources in taxeditor
- Added the field, the preference is still missing.
- 02:06 PM feature request #10196: Hybrid structure-state terms
- Can you please review. When done we can create a ticket for the remaining open issue.
- 01:54 PM bug #10192: External Links do not work in E+M
- It works now, but it changed from using popups to opening a new tab which is maybe not wanted (there might be a reaso...
- 01:14 PM bug #10192: External Links do not work in E+M
- Andreas Müller wrote in #note-5:
> How can I test this? It is not yet pushed to production, or? And on test the upda... - 01:43 PM Revision f49c0c13 (taxeditor): ref #10202: add preference handling
- 01:42 PM Revision f04331a1 (cdmlib): ref #10202: add preference predicate
- 01:42 PM bug #10204 (Resolved): GBIF search does not work due to missing json-lib
- Should be fixed. Please review finally on nightly.
Json update moved to #10205 - 01:34 PM bug #10204 (In Progress): GBIF search does not work due to missing json-lib
- probably fixed by adding missing dependencies, but we should upgrade to a more modern json framework
- 01:37 PM task #10205 (Closed): Update GBIF import to modern json library.
- ... after fixing do not forget to remove 4 dependencies again. See commit:taxeditor|f60a1e5ffb4425d1f
- 01:34 PM Revision 59ae0b13 (taxeditor): cleanup
- 10:11 AM Revision 3b530403 (cdmlib): adapt test to using https for gbif webservice
- 09:02 AM Revision 3fe61023 (taxeditor): ref #10202: add field for specimen in description element source
- 08:11 AM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Also tested move and delete in TaxEditor.
@AM: Please review the move with position method.
12/15/2022
- 03:34 PM Revision f60a1e5f (taxeditor): ref #10204: revert remove of json and other libraries
- 03:27 PM Revision 4ea78047 (cdmlib): ref #10204: code cleaning
- 03:27 PM Revision acbded93 (cdmlib): ref #10204: catch media parsing exceptions and code cleaning
- 03:25 PM bug #10204 (Closed): GBIF search does not work due to missing json-lib
- The Gbif search does not work in editor because some of the removed libraries are needed.
- 09:58 AM Revision 988163c8 (cdmlib): fix missing treeIndex in TaxonNodeDto
12/14/2022
- 10:54 PM feature request #10196: Hybrid structure-state terms
- This is more or less fixed now and tested in Character editor and in matrix.
Not yet tested in PolytomousKeys(need... - 11:30 AM feature request #10196 (Resolved): Hybrid structure-state terms
- This should be mostly ready. Still need to handle open issues and test in TaxEditor (add voc to characters and in mat...
- 09:48 PM Revision ad098825 (cdmlib): ref #10196 remove fixmes and replace by todos where minor open issues are
- 08:42 PM bug #10191: Error message on taxon specimen page for non-atomized specimens
- NoK:
https://test.e-taxonomy.eu/dataportal/preview/cichorieae/cdm_dataportal/taxon/b335ceee-d6c1-4c93-841d-3b4bd27... - 11:28 AM bug #10191 (Feedback): Error message on taxon specimen page for non-atomized specimens
- This is definetely much better than before as the error messages are not shown anymore and the fields are filled with...
- 08:32 PM Revision 070e2256 (cdmlib): ref #10196 further adapt IOs and service layer to hybrid states
- 08:16 PM Revision 17b5d25f (cdmlib): cleanup
- 08:02 PM Revision a183be96 (cdmlib): ref #10196 fix state and character/feature handling in RowWrapperDTO and description save
- * by casting not filtering for term class
- 07:59 PM Revision 3ccbd660 (cdmlib): cleanup
- 06:15 PM Revision 2bf2296c (taxeditor): ref #10196 allow Structures for StateVocabularyDtoCollectionElement
- 04:27 PM Revision b07fb70b (cdmlib): ref #10196 fix by findVocabulary by termtype list
- 03:24 PM Revision 7e47e3ba (cdmlib): cleanup
- 03:12 PM Revision 7205d591 (cdmlib): cleanup
- 03:00 PM Revision e4d54229 (cdmlib): cleanup
- 01:49 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Katja Luther wrote in #note-5:
> Andreas Müller wrote in #note-4:
> > Can you please review?
> >
> > This should... - 01:34 PM Revision 6b68bfb9 (cdmlib): ref #10198: implement test for moveTerm and fix move with position
- 11:47 AM Revision da1315f1 (cdmlib): ref #6794 add deprecation and javadoc to OrderedTermVocabulary methods
- 11:45 AM bug #10190 (Feedback): Invalid argument supplied for foreach() in order_fieldUnitDtos_by_date_and_type()
- Generally this is fixed. The result can be seen on test e.g. at https://test.e-taxonomy.eu/dataportal/preview/cichori...
- 11:42 AM Revision 40d3f39f (cdmlib): ref #10190 cleanup null check a bit
- 11:42 AM Revision b4f3c9fb (cdmlib): cleanup
- 11:04 AM bug #10192 (Feedback): External Links do not work in E+M
- How can I test this? It is not yet pushed to production, or? And on test the updates are not yet installed as far as ...
- 10:41 AM feature request #10194: Allow specimens as source for factual data
- I guess we can close this ticket. Can you please do final review. Please also consider implementation in TaxEditor (#...
- 10:39 AM feature request #10203 (New): Show specimen sources in publications
- ... (dataportal and print publication)
for details see #10194
- 10:36 AM feature request #10202 (Closed): Allow entering specimen in fact sources in taxeditor
- ... as an alternative to references. This was implemented in the model in #10194.
Maybe we should have a preferenc... - 10:05 AM Revision 9e2e5157 (taxeditor): use TermTree.newFeatureInstance instead of newInstance
- 09:22 AM Revision d59a2277 (cdmlib): cleaup and remove deprecated methods from TermTree
- 01:33 AM task #10201 (Resolved): Make synonym type an enum
- still need to test taxeditor and fix dozer test
- 12:40 AM Revision 1a16c318 (taxeditor): ref #10201 make synonym type an enum in taxeditor (adapt combo element)
- 12:33 AM Revision 73e75270 (cdmlib): ref #10201 make synonym type an enum in cdmlib (adapt dataset.dtd)
- 12:32 AM Revision 9451f4aa (cdm-vaadin): ref #10201 make synonym type an enum in vaadin (cont.)
- 12:09 AM Revision 1126d2a5 (cdm-vaadin): ref #10201, ref #10194 adapt testH2 in vaadin
- 12:09 AM Revision 4f3bf065 (taxeditor): ref #10201, ref #10194 adapt testH2 in taxeditor
- 12:07 AM Revision f0fda4e4 (cdmlib): ref #10201, ref #10194 adapt testH2 to cdmlib
- 12:00 AM Revision 88be1bfd (cdm-vaadin): ref #10201 make synonym type an enum in vaadin
12/13/2022
- 11:36 PM Revision 0905498c (cdmlib): ref #10194 fix missing specimen_id in test data
- 11:33 PM task #10201 (In Progress): Make synonym type an enum
- 04:40 PM task #10201 (Closed): Make synonym type an enum
- .. as it is very stable and the representations are not really needed
Open issues:
* ~~vaadin~~
* ~~taxeditor~... - 11:17 PM Revision 4821942d (taxeditor): ref #10201 Make synonym type an enum in taxeditor
- 11:17 PM Revision 64a6a386 (taxeditor): cleanup
- 11:12 PM Revision a777f3a7 (cdmlib): ref #10201 update script for synonym type change to enum
- 11:10 PM Revision 41e54b6e (cdmlib): cleanup
- 09:26 PM Revision 61d2eae8 (cdmlib): cleanup FreeTextSearchIntegrationTest incl. data
- 08:56 PM Revision 6029884c (cdmlib): cleanup
- 08:54 PM Revision 158aea27 (cdmlib): ref #10201 make synonym type an enum in cdmlib
- 08:54 PM Revision 1e26229c (cdmlib): cleanup
- 08:54 PM Revision c6365af5 (cdmlib): ref #10194 Add specimen to DescriptionElementSource (adapt test script and FullCoverageDataGenerator)
- 08:54 PM Revision 861b3cdc (cdmlib): ref #10194 Add specimen to DescriptionElementSource
- 08:54 PM Revision 67c36b25 (cdmlib): cleanup
- 08:53 PM Revision fbc590be (cdmlib): cleanup
- 01:46 PM Revision 7cf326ec (cdmlib): cleanup
- 12:58 PM Revision e0bcf884 (cdmlib): cleanup
- 12:57 PM Revision c1e0f30f (cdmlib): ref #6794 fix return type for orderindex
- 12:05 PM Revision 06f30d52 (taxeditor): ref #10199: adapt delete handler and operation to multi select deletion of terms
- 12:01 PM Revision a86c1d74 (cdmlib): ref #10199: implement delete for a set of term uuids
- 11:50 AM Revision cd05a561 (cdmlib-apps): ref #6794 remove OrderedTermBase in app-import
- 11:49 AM Revision c9fd74db (taxeditor): cleanup
- 11:49 AM Revision c10067d5 (taxeditor): ref #6794 remove OrderedTermBase from taxeditor
- 11:44 AM Revision 3fa6ded6 (cdmlib): cleanup
- 11:44 AM Revision 9c6f2a51 (cdmlib): ref #6794 remove OrderedTermBase in cdmlib
- 11:43 AM Revision b5bd681f (cdmlib): cleanup
- 11:42 AM Revision d60cb364 (cdmlib): ref #6794 helper for commit issue in OrderedTermBase removal
- 11:19 AM Revision b2a4c3c7 (cdm-vaadin): cleanup
- 10:40 AM Revision 0c6c3108 (taxeditor): ref #10199: allow multi-select for moving terms
- 10:24 AM feature request #10199: Implement multi-select for terms in term vocabulary editor
- Delete and the menu entry for moving is available only for a single term, but moving by drag & drop is already availa...
12/12/2022
- 10:42 PM Revision a7069102 (cdmlib): cleanup
- 05:58 PM feature request #10200 (New): Allow second vocabulary editor/view to compare vocabularies
- NoK:
hilfreich wäre es auch, wenn sich ein Vokabular in 2 Fenstern öffnen ließe, damit das Vergleichen leichter is... - 05:55 PM feature request #10199: Implement multi-select for terms in term vocabulary editor
- Is this easy to implement? If yes, please implement in this milestone, otherwise move.
- 05:54 PM feature request #10199 (Closed): Implement multi-select for terms in term vocabulary editor
- ... to move or delete terms
NoK:
was wir auf jeden Fall in Zukunft noch brauchen, ist die Verschiebung (und Lös... - 04:48 PM Revision 993ef082 (cdmlib): ref #6794 Change OrderedTermBase to DefinedTermBase in CondensedDistributionComposer
- 04:47 PM Revision b96dcdf4 (cdmlib): cleanup
- 04:41 PM Revision 5a9b2f38 (taxeditor): cleanup
12/11/2022
- 11:20 PM Revision 81aaccdd (cdm-vaadin): cleanup
- 11:18 PM Revision 595fec37 (cdmlib-apps): adapt e-flora, pesi and app-import to latest changes
- 01:49 AM Revision d70fff5c (cdm-vaadin): ref #6794 reduce calls to isLower and isHigher in Rank class in vaadin
- 01:48 AM Revision 49520df1 (cdmlib-apps): ref #6794 reduce calls to isLower and isHigher in Rank class in app-import
- 01:45 AM Revision e19abe68 (cdmlib): cleanup
- 01:34 AM Revision fc422f9b (cdmlib): ref #6794 reduce calls to isLower and isHigher in Rank class (cont.)
- 01:31 AM Revision ad199dcf (cdmlib): cleanup and javadoc
- 01:30 AM Revision 6d7382df (cdmlib): ref #6794 reduce calls to isLower and isHigher in Rank class
- 01:07 AM Revision 9f27f852 (cdmlib): cleanup
- 01:01 AM Revision 0ded1664 (cdmlib-apps): Cleanup
12/09/2022
- 02:48 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Andreas Müller wrote in #note-4:
> Can you please review?
>
> This should include checking if term handling (espe... - 02:00 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Can you please review?
This should include checking if term handling (especially removal) in vocabularies still wo... - 12:31 PM bug #10198 (Resolved): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Applied in changeset commit:cdmlib|d65295b4a60c6f5ce745eb3c07fc4cda88b8c418.
- 12:29 PM bug #10198 (Closed): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- The termTree in OrderedTermVocabulary identifies entries via compareTo. The compareTo for OrderedTerms in the same vo...
- 01:14 PM task #9008: Add chapter "Taxonomic concepts and source citations in the EDIT Platform" to documentation "Manual-EDIT-Platform"
- WGB:
dieses Ticket ist erledigt – der Text war schon längere Zeit in Doku 4; ich habe mir nochmal die Ergänzungen ... - 01:12 PM task #9008 (Closed): Add chapter "Taxonomic concepts and source citations in the EDIT Platform" to documentation "Manual-EDIT-Platform"
- 01:08 PM Revision 67a52da6 (taxeditor): ref #10196 adapt TaxEditor to hybrid structure states
- 12:35 PM Revision 880fb701 (cdmlib): minor and cleanup
- 12:30 PM Revision d65295b4 (cdmlib): fix #10198 fix term removal
- 10:55 AM Revision 427c9b3b (cdmlib): ref #10196 add methods to allow to search for vocabularies for >1 term types
- 10:46 AM Revision b869700f (taxeditor): cleanup
- 03:50 AM Revision df45fc99 (cdmlib): cleanup
- 03:41 AM Revision 94365b1b (cdmlib): ref #6794, ref #3327 remove *equal* methods from OrderedTermBase and -Vocabulary
- 03:33 AM Revision 11177ee7 (cdmlib): cleanup
- 03:14 AM Revision abaa6c56 (cdmlib): ref #10196 user DefinedTermBase<?> for hybrid states in cdmlib
- 02:03 AM Revision 131d91a0 (cdmlib): ref #10196 adapt supportedCategoricalEnumerations to hybrid states in cdmlib
- 02:01 AM Revision 0ebe3b3e (cdmlib): ref #10196 implement hybrid states with interface
12/08/2022
- 11:46 PM Revision d58b8e3f (taxeditor): cleanup
- 10:07 PM Revision 0f1e36bd (cdmlib): cleanup and maybe some issues related to ref #10196
- 06:36 PM Revision 3cdcfd06 (taxeditor): cleanup
- 01:43 PM Revision 574e585a (cdmlib): cleanup
- 11:34 AM bug #10197: Show empty page for delay while updating
- One suggestion would be to clear the view until the update starts and then set the label to "Updating ... " while the...
- 11:22 AM feature request #10133: Improve ontology state vocabularies
- AM:
als nächstes sollten wir uns mal die Duplikate anschauen.
Ich habe mal 2 Excel-Tabelle erstellt mit Duplika...
12/07/2022
- 04:42 PM feature request #10133: Improve ontology state vocabularies
- AM:
Ich habe mir gerade mal angeschaut, wieviele Strukturen in dem Strukturbaum „structures 1.0“ verwendet werden (z... - 01:45 PM feature request #10133: Improve ontology state vocabularies
- AM:
Außerdem habe ich mir die Vokabulare nochmal angeschaut. In „structure in adjective form“ scheinen mire her Ad... - 01:05 PM feature request #10133 (In Progress): Improve ontology state vocabularies
- 01:05 PM feature request #10133: Improve ontology state vocabularies
- NoK:
* 00 Temporal Modifiers“: Die stehen nur unter structures, weil die modifiers nicht implementiert waren, könn... - 03:17 PM bug #10197 (In Progress): Show empty page for delay while updating
- When updating the details views the different parts should show an empty page with an explaining message. Also for ot...
12/06/2022
- 11:30 PM feature request #10133: Improve ontology state vocabularies
- Analyzing the structure tree "structures 1.0" and the structure vocabularies shows that many of the structures in the...
- 09:12 PM feature request #10196: Hybrid structure-state terms
- AM:
Erstmal würde ich mir gerne nochmal ins Gedächtnis zurückrufen, inwiefern Terme beide Eigenschaften (State/Struk... - 05:48 PM feature request #10196 (Closed): Hybrid structure-state terms
- copied from #10133#note-1
some structures can also be used as states in a character matrix. We need to decide how ... - 06:08 PM Revision 4e8bd680 (cdmlib): ref #2934, ref #4670 add moose-extensions
- 06:04 PM Revision 7eeaa9dc (cdmlib): cleanup
- 03:24 PM bug #10195: Character data should be ordered by character tree
- Andreas Müller wrote in #note-7:
> Can you please check how far this is kind of a duplicate for #8657 or any other of... - 02:33 PM bug #10195: Character data should be ordered by character tree
- Can you please check how far this is kind of a duplicate for #8657 or any other of the related tickets or how far the...
- 02:47 PM Revision e5c6153b (taxeditor): cleanup
- 02:47 PM Revision 80271249 (taxeditor): javadoc
- 10:33 AM Revision d29a17c1 (cdm-dataportal): ref #10191: revert changes in method signature
- 10:13 AM Revision 19255dc5 (cdm-dataportal): ref #10191: show label of fieldunit if not atmoised -continue
- 09:05 AM bug #9629 (In Progress): Better handling of OptionalDataException
- Reopen the ticket because it appeared again:
Hallo,
Caryophyllales_spp, beim Aufruf eines Synonyms aus der Suche:...
12/05/2022
- 02:36 PM feature request #9584 (Resolved): specimen page: character data displayed in details section
- Simple display of the character data added, new ticket created (#10195).
Please review this first implementation. - 02:28 PM feature request #9584: specimen page: character data displayed in details section
- Actually to have the basic information about the existing character data in the portal I would commit the simple impl...
- 02:15 PM feature request #9584: specimen page: character data displayed in details section
- There are implementations of the aggregated descriptions for the taxon page, but both representations missing informa...
- 01:22 PM feature request #9584: specimen page: character data displayed in details section
- NoK:
ja, im Screenshot erscheinen die Characters in alphabetischer Reihenfolge des Character label. Die gewünschte... - 12:20 PM feature request #9584: specimen page: character data displayed in details section
- Actually I use the order used in the dto, need to check how this is created.
Andreas Müller wrote in #note-11:
> Nor... - 12:11 PM feature request #9584: specimen page: character data displayed in details section
- Norbert, can you have a look on the last commit and give a comment if this is an acceptable layout?
Question from ... - 11:07 AM feature request #9584 (In Progress): specimen page: character data displayed in details section
- Displaying the character data in its own table would look like this:
 - 02:35 PM bug #10195 (New): Character data should be ordered by character tree
- The display of the character data in specimen details page and taxon page missing the information about the character...
- 02:30 PM Revision 52645dd4 (cdm-dataportal): ref #9584: show character data in specimen details page
- 01:18 PM bug #10054: Changes on secundum reference are lost after changing status to basionym
- Older mail from Maryam (2022-08-26) which is maybe related:
I received this email while saving the changes on sec....
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