Activity
From 11/13/2022 to 12/12/2022
12/12/2022
- 10:42 PM Revision a7069102 (cdmlib): cleanup
- 05:58 PM feature request #10200 (New): Allow second vocabulary editor/view to compare vocabularies
- NoK:
hilfreich wäre es auch, wenn sich ein Vokabular in 2 Fenstern öffnen ließe, damit das Vergleichen leichter is... - 05:55 PM feature request #10199: Implement multi-select for terms in term vocabulary editor
- Is this easy to implement? If yes, please implement in this milestone, otherwise move.
- 05:54 PM feature request #10199 (Closed): Implement multi-select for terms in term vocabulary editor
- ... to move or delete terms
NoK:
was wir auf jeden Fall in Zukunft noch brauchen, ist die Verschiebung (und Lös... - 04:48 PM Revision 993ef082 (cdmlib): ref #6794 Change OrderedTermBase to DefinedTermBase in CondensedDistributionComposer
- 04:47 PM Revision b96dcdf4 (cdmlib): cleanup
- 04:41 PM Revision 5a9b2f38 (taxeditor): cleanup
12/11/2022
- 11:20 PM Revision 81aaccdd (cdm-vaadin): cleanup
- 11:18 PM Revision 595fec37 (cdmlib-apps): adapt e-flora, pesi and app-import to latest changes
- 01:49 AM Revision d70fff5c (cdm-vaadin): ref #6794 reduce calls to isLower and isHigher in Rank class in vaadin
- 01:48 AM Revision 49520df1 (cdmlib-apps): ref #6794 reduce calls to isLower and isHigher in Rank class in app-import
- 01:45 AM Revision e19abe68 (cdmlib): cleanup
- 01:34 AM Revision fc422f9b (cdmlib): ref #6794 reduce calls to isLower and isHigher in Rank class (cont.)
- 01:31 AM Revision ad199dcf (cdmlib): cleanup and javadoc
- 01:30 AM Revision 6d7382df (cdmlib): ref #6794 reduce calls to isLower and isHigher in Rank class
- 01:07 AM Revision 9f27f852 (cdmlib): cleanup
- 01:01 AM Revision 0ded1664 (cdmlib-apps): Cleanup
12/09/2022
- 02:48 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Andreas Müller wrote in #note-4:
> Can you please review?
>
> This should include checking if term handling (espe... - 02:00 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Can you please review?
This should include checking if term handling (especially removal) in vocabularies still wo... - 12:31 PM bug #10198 (Resolved): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Applied in changeset commit:cdmlib|d65295b4a60c6f5ce745eb3c07fc4cda88b8c418.
- 12:29 PM bug #10198 (Closed): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- The termTree in OrderedTermVocabulary identifies entries via compareTo. The compareTo for OrderedTerms in the same vo...
- 01:14 PM task #9008: Add chapter "Taxonomic concepts and source citations in the EDIT Platform" to documentation "Manual-EDIT-Platform"
- WGB:
dieses Ticket ist erledigt – der Text war schon längere Zeit in Doku 4; ich habe mir nochmal die Ergänzungen ... - 01:12 PM task #9008 (Closed): Add chapter "Taxonomic concepts and source citations in the EDIT Platform" to documentation "Manual-EDIT-Platform"
- 01:08 PM Revision 67a52da6 (taxeditor): ref #10196 adapt TaxEditor to hybrid structure states
- 12:35 PM Revision 880fb701 (cdmlib): minor and cleanup
- 12:30 PM Revision d65295b4 (cdmlib): fix #10198 fix term removal
- 10:55 AM Revision 427c9b3b (cdmlib): ref #10196 add methods to allow to search for vocabularies for >1 term types
- 10:46 AM Revision b869700f (taxeditor): cleanup
- 03:50 AM Revision df45fc99 (cdmlib): cleanup
- 03:41 AM Revision 94365b1b (cdmlib): ref #6794, ref #3327 remove *equal* methods from OrderedTermBase and -Vocabulary
- 03:33 AM Revision 11177ee7 (cdmlib): cleanup
- 03:14 AM Revision abaa6c56 (cdmlib): ref #10196 user DefinedTermBase<?> for hybrid states in cdmlib
- 02:03 AM Revision 131d91a0 (cdmlib): ref #10196 adapt supportedCategoricalEnumerations to hybrid states in cdmlib
- 02:01 AM Revision 0ebe3b3e (cdmlib): ref #10196 implement hybrid states with interface
12/08/2022
- 11:46 PM Revision d58b8e3f (taxeditor): cleanup
- 10:07 PM Revision 0f1e36bd (cdmlib): cleanup and maybe some issues related to ref #10196
- 06:36 PM Revision 3cdcfd06 (taxeditor): cleanup
- 01:43 PM Revision 574e585a (cdmlib): cleanup
- 11:34 AM bug #10197: Show empty page for delay while updating
- One suggestion would be to clear the view until the update starts and then set the label to "Updating ... " while the...
- 11:22 AM feature request #10133: Improve ontology state vocabularies
- AM:
als nächstes sollten wir uns mal die Duplikate anschauen.
Ich habe mal 2 Excel-Tabelle erstellt mit Duplika...
12/07/2022
- 04:42 PM feature request #10133: Improve ontology state vocabularies
- AM:
Ich habe mir gerade mal angeschaut, wieviele Strukturen in dem Strukturbaum „structures 1.0“ verwendet werden (z... - 01:45 PM feature request #10133: Improve ontology state vocabularies
- AM:
Außerdem habe ich mir die Vokabulare nochmal angeschaut. In „structure in adjective form“ scheinen mire her Ad... - 01:05 PM feature request #10133 (In Progress): Improve ontology state vocabularies
- 01:05 PM feature request #10133: Improve ontology state vocabularies
- NoK:
* 00 Temporal Modifiers“: Die stehen nur unter structures, weil die modifiers nicht implementiert waren, könn... - 03:17 PM bug #10197 (In Progress): Show empty page for delay while updating
- When updating the details views the different parts should show an empty page with an explaining message. Also for ot...
12/06/2022
- 11:30 PM feature request #10133: Improve ontology state vocabularies
- Analyzing the structure tree "structures 1.0" and the structure vocabularies shows that many of the structures in the...
- 09:12 PM feature request #10196: Hybrid structure-state terms
- AM:
Erstmal würde ich mir gerne nochmal ins Gedächtnis zurückrufen, inwiefern Terme beide Eigenschaften (State/Struk... - 05:48 PM feature request #10196 (Closed): Hybrid structure-state terms
- copied from #10133#note-1
some structures can also be used as states in a character matrix. We need to decide how ... - 06:08 PM Revision 4e8bd680 (cdmlib): ref #2934, ref #4670 add moose-extensions
- 06:04 PM Revision 7eeaa9dc (cdmlib): cleanup
- 03:24 PM bug #10195: Character data should be ordered by character tree
- Andreas Müller wrote in #note-7:
> Can you please check how far this is kind of a duplicate for #8657 or any other of... - 02:33 PM bug #10195: Character data should be ordered by character tree
- Can you please check how far this is kind of a duplicate for #8657 or any other of the related tickets or how far the...
- 02:47 PM Revision e5c6153b (taxeditor): cleanup
- 02:47 PM Revision 80271249 (taxeditor): javadoc
- 10:33 AM Revision d29a17c1 (cdm-dataportal): ref #10191: revert changes in method signature
- 10:13 AM Revision 19255dc5 (cdm-dataportal): ref #10191: show label of fieldunit if not atmoised -continue
- 09:05 AM bug #9629 (In Progress): Better handling of OptionalDataException
- Reopen the ticket because it appeared again:
Hallo,
Caryophyllales_spp, beim Aufruf eines Synonyms aus der Suche:...
12/05/2022
- 02:36 PM feature request #9584 (Resolved): specimen page: character data displayed in details section
- Simple display of the character data added, new ticket created (#10195).
Please review this first implementation. - 02:28 PM feature request #9584: specimen page: character data displayed in details section
- Actually to have the basic information about the existing character data in the portal I would commit the simple impl...
- 02:15 PM feature request #9584: specimen page: character data displayed in details section
- There are implementations of the aggregated descriptions for the taxon page, but both representations missing informa...
- 01:22 PM feature request #9584: specimen page: character data displayed in details section
- NoK:
ja, im Screenshot erscheinen die Characters in alphabetischer Reihenfolge des Character label. Die gewünschte... - 12:20 PM feature request #9584: specimen page: character data displayed in details section
- Actually I use the order used in the dto, need to check how this is created.
Andreas Müller wrote in #note-11:
> Nor... - 12:11 PM feature request #9584: specimen page: character data displayed in details section
- Norbert, can you have a look on the last commit and give a comment if this is an acceptable layout?
Question from ... - 11:07 AM feature request #9584 (In Progress): specimen page: character data displayed in details section
- Displaying the character data in its own table would look like this:
 - 02:35 PM bug #10195 (New): Character data should be ordered by character tree
- The display of the character data in specimen details page and taxon page missing the information about the character...
- 02:30 PM Revision 52645dd4 (cdm-dataportal): ref #9584: show character data in specimen details page
- 01:18 PM bug #10054: Changes on secundum reference are lost after changing status to basionym
- Older mail from Maryam (2022-08-26) which is maybe related:
I received this email while saving the changes on sec....
12/02/2022
- 09:11 PM feature request #10194 (Resolved): Allow specimens as source for factual data
- 08:49 PM Revision f93763da (cdmlib): cleanup
- 02:47 PM bug #8132 (Worksforme): phycobank cdm-server instance problems with db connections
- 09:02 AM Revision bfffa47e (taxeditor): fix #4456: code cleaning
12/01/2022
- 06:53 PM bug #8132 (Resolved): phycobank cdm-server instance problems with db connections
- To me it seems that this problem did not occur anymore in the last years and we can close the ticket as worksforme.
... - 06:42 PM bug #8170 (New): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource does not conform to the interface
- 06:31 PM feature request #10194: Allow specimens as source for factual data
- WGB:
gibt es eigentlich eine Möglichkeit, Specimen sozusagen als Referenz (Voucher) für Faktendaten zu benutzen?
Da... - 06:29 PM feature request #10194 (Closed): Allow specimens as source for factual data
- ... and maybe others.
Think can be handled model side with existing CdmLinkSource or as explicit attribute in Desc... - 01:49 PM Revision 7fc954fe (taxeditor): revert unwanted changes
- 12:21 PM Revision 60cfeb3d (taxeditor): remove unused initialize method to make it compile
- 11:58 AM Revision e1dddccc (taxeditor): cleanup
- 11:56 AM Revision b663b23c (taxeditor): adapt to new DescriptionElementFormatter package
- 11:20 AM Revision 89a92d2d (cdmlib-apps): cleanup
- 11:18 AM Revision d86c767b (cdm-vaadin): cleanup
- 11:17 AM Revision 361ca821 (cdm-vaadin): rename EllypsisFormatter interface in vaadin
- 11:14 AM Revision 1fabfba5 (cdmlib): rename EllypsisFormatter interface
- 11:12 AM Revision cb9fcd29 (cdmlib): rename abstract classes and some other cleanup
- 09:54 AM bug #10191 (Resolved): Error message on taxon specimen page for non-atomized specimens
- Please review, as test you could use the same taxon on test: https://test.e-taxonomy.eu/dataportal/preview/cichorieae...
- 09:02 AM Revision 723cf0c5 (cdm-dataportal): ref #10191: show label of fieldunit if not atmoised
- 12:19 AM bug #10193: OutOfMemory exception when exporting mexico flora
- KL, I assigend the ticket to you as you may implement the workaround solution.
If this works we may discuss how to... - 12:17 AM bug #10193 (New): OutOfMemory exception when exporting mexico flora
- When running CDM-l export the OOME occurred after about 85% (see logfile at about line 39.467).
A bit earlier (li...
11/30/2022
- 08:25 PM Revision 058c22aa (cdmlib): cleanup
- 08:23 PM Revision e89c358b (cdmlib): cleanup
- 04:15 PM bug #10191: Error message on taxon specimen page for non-atomized specimens
- This is caused by not atomised specimen, so the fields of the dto are not filled. We could use the summarylabel of th...
- 03:21 PM bug #10190 (Resolved): Invalid argument supplied for foreach() in order_fieldUnitDtos_by_date_and_type()
- please review
- 03:21 PM bug #10190: Invalid argument supplied for foreach() in order_fieldUnitDtos_by_date_and_type()
- The problem was caused by a NPE when the taxon/name of a determination was not set.
- 03:19 PM Revision 00d2d5ef (cdmlib): ref #10190: null check for taxonname and taxon in determination
- 02:59 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- The Editor must guarantee that OcccurenceStatus.type is never null.
Additionally, we should add NotNull to Occurre... - 10:52 AM Revision 604e7242 (taxeditor): add viewer generics to AbstractCdmEditorPart, remove deprecated ViewerSorter and some other cleanup
- 10:02 AM bug #10192 (Resolved): External Links do not work in E+M
- I removed the javascript call and add the attribute to open the link in a new tab. Please review.
- 10:01 AM Revision 1ffd7502 (taxeditor): cleanup
- 09:55 AM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- Now an explicit error is thrown with message "No cache available for cacheId = xxx" and some debug information.
For n... - 08:51 AM bug #7699 (In Progress): NPE in CdmTransientEntityCacher.getCacheElement()
- 09:53 AM Revision 38db2a51 (cdm-dataportal): ref #10192: remove javascript call and add attribute to open external link in new tab
- 09:48 AM Revision f1c74cff (cdmlib): ref #7699 add debugging to CdmTransientEntityCacher.getCache() (cont. II)
- 09:24 AM Revision b4aa8a57 (cdmlib): ref #7699 add debugging to CdmTransientEntityCacher.getCache() (cont.)
- 08:38 AM bug #9174 (Duplicate): After longer inactivity NPE for cache
- This seems to be a duplicate for #7699
- 01:31 AM Revision 2014062e (cdmlib): ref #7699 add debugging to CdmTransientEntityCacher.getCache()
- 12:51 AM Revision 674b745b (taxeditor): ref #10186, ref #9174 add method logging to CachingHttpInvokerProxyFactoryBean
- 12:47 AM Revision 89374cca (taxeditor): cleanup
11/29/2022
- 07:04 PM feature request #10156: Show field unit media in taxon image galleries
- I guess this can not be handled in the current milestone, but maybe in the next one.
- 12:48 PM bug #10192 (In Progress): External Links do not work in E+M
- The problem comes from the call of "drupal_strip_dangerous_protocols("JavaScript:popupExternalLinks('url'))" inside l...
11/28/2022
- 01:23 PM task #10183 (Closed): Import Buxales via Cdm2Cdm
- 12:10 PM bug #10182 (In Progress): Portal does not show typespecimen for duplicated typedesignation
- 12:07 PM bug #10192 (Closed): External Links do not work in E+M
- NaK:
die Externen Such-Links aus E+M funktionieren teilweise nicht, hinter dem Taxon-Namen bleibt immer ein Anführ... - 12:04 PM bug #10186: Problems with session handling in taxeditor
- Andreas Müller wrote in #note-7:
> A critical issue: In AbstractCdmEditorPartE4 line 182 it is checked if (new) sele...
11/27/2022
- 10:59 PM Revision 20d52c89 (taxeditor): ref #10186 fix incorrect delaySelection handling for multiselect and no active Editor
- 10:54 PM Revision df44f597 (taxeditor): cleanup
- 12:18 AM Revision dad85080 (taxeditor): ref #10186 fix incorrect delaySelection handling for equal previous selection (and remove some debugging)
11/25/2022
- 10:02 AM bug #10191 (Closed): Error message on taxon specimen page for non-atomized specimens
- Message is: Uninitialized string offset: -1 in drupal_substr() (line 640 of /var/www/drupal-7-cdm-dataportal/web/incl...
- 09:59 AM bug #10190 (Closed): Invalid argument supplied for foreach() in order_fieldUnitDtos_by_date_and_type()
- This exception appears for
https://cichorieae.e-taxonomy.net/portal/cdm_dataportal/taxon/ecb7a76e-694a-4706-b1ab-... - 12:06 AM Revision ed7192b6 (taxeditor): further rename taxonNameEditor -> taxonEditor (cont.)
- 12:05 AM Revision 92eade32 (taxeditor): cleanup
- 12:04 AM Revision d1e5306c (taxeditor): further rename taxonNameEditor -> taxonEditor
11/24/2022
- 11:08 PM Revision a7d6ad1f (taxeditor): cleanup
- 11:08 PM Revision 9c50b7b6 (taxeditor): ref #10189 split CdmApplicationController into repository and application part in taxeditor print publisher (only make compilable)
- 10:46 PM Revision eef673ec (cdm-vaadin): ref #10189 split CdmApplicationController into repository and application part in vaadin
- 06:20 PM Revision 9d02f251 (taxeditor): cleanup
- 06:19 PM Revision bac73844 (taxeditor): ref #10189 split CdmApplicationController into repository and application part in TaxEditor (cont.)
- 06:16 PM task #10189 (Resolved): Split CdmApplicationController into repository and application part
- please review
- 06:05 PM task #10189 (Closed): Split CdmApplicationController into repository and application part
- The application part is only for local applications supporting transactions etc. while the repository part can be use...
- 06:15 PM Revision 94a9209a (cdmlib-apps): ref #10189 split CdmApplicationController into repository and application part in app-import
- 06:13 PM Revision 058a92f1 (taxeditor): ref #10189 split CdmApplicationController into repository and application part in TaxEditor
- 06:06 PM Revision eb224aa5 (cdmlib): ref #10189 split CdmApplicationController into repository and application part in cdmlib
- 04:45 PM Revision 4cf52851 (taxeditor): cleanup
- 02:49 PM Revision 29dea790 (taxeditor): ref #10186 further remove ConversationHolder from TaxEditor code and some cleanup (cont.)
- 02:48 PM Revision 28651d0b (taxeditor): cleanup
- 02:48 PM Revision d02e900a (taxeditor): force usage of remoting everywhere
- 02:18 PM Revision 4c980025 (taxeditor): ref #10186 further remove ConversationHolder from TaxEditor code and some cleanup
- 01:03 PM Revision eb79d959 (taxeditor): rename some eu.*.Abstract*E4 classes
- 12:54 PM Revision 1f40607c (taxeditor): rename AbstractGroupedContainerE4 -> AbstractGroupedContainer and cleanup
- 12:44 PM Revision fff9f5d7 (taxeditor): rename AbstractCdmEditorPartE4 -> AbstractCdmEditorPart
- 12:44 PM Revision 03f01a13 (taxeditor): cleanup and rename createPartObject -> getPartObject
- 11:07 AM bug #10188 (New): Allow moving large subtrees
- Currently it is not possible to move large subtrees in the TaxEditors due to memory issues during treeindex updating....
11/23/2022
- 01:11 PM Revision 2794c276 (taxeditor): ref 10138: use setDirty but do not change dirty flag of managedform
- 12:35 PM Revision bd1aedf5 (taxeditor): ref 10138: revert changes to update taxon editor after changes in details view
- 12:29 PM bug #10186: Problems with session handling in taxeditor
- A critical issue: In AbstractCdmEditorPartE4 line 182 it is checked if (new) selection equals the previous selection....
- 09:33 AM Revision f65c4336 (taxeditor): revert changes in code cleaning commit
11/22/2022
- 07:12 PM Revision 21d5361f (taxeditor): setFactsVisible and setMediaVisible again
- 07:11 PM Revision 5f709cc6 (taxeditor): cleanup
- 03:14 PM Revision bd122e26 (taxeditor): rename TaxonNameEditor to TaxonEditor and NameViewerE4 to NameViewer
- 03:09 PM task #10187 (New): Use only 1 service call to initialize supplemental data
- Currently for initializing supplemental data of e.g. a synonym in TaxEditor 7 services calls appear, 1 for each data ...
- 01:57 PM Revision b135cc84 (taxeditor): handle default for TaxonEditorInput
- 01:57 PM Revision d7eb304b (taxeditor): cleanup
- 01:00 PM Revision e6469973 (taxeditor): cleanup and fix test
- 12:31 PM Revision 10ee1227 (taxeditor): cleanup
- 12:31 PM Revision 428d32bf (taxeditor): rename TaxonNameEditorTest -> TaxonEditorTest
- 12:25 PM Revision 0e7abe8a (cdmlib): cleanup
- 12:21 PM Revision bd4875e0 (cdmlib): cleanup
- 10:59 AM Revision 2faf3520 (cdmlib): cleanup
11/21/2022
- 03:03 PM Revision b9b6e1f4 (taxeditor): rename TaxonNameEditor and other classes and remove E4 - continue
- 03:01 PM Revision c7bc3975 (taxeditor): rename TaxonNameEditor and other classes and remove E4 - continue
- 02:54 PM Revision 98ca4627 (taxeditor): rename TaxonNameEditor and other classes and remove E4 - continue
- 01:59 PM Revision 9b135851 (taxeditor): rename TaxonNameEditor and other classes and remove E$
- 12:27 PM Revision 0a75fd54 (taxeditor): change logger
- 11:53 AM Revision 0caafa75 (taxeditor): ref #10186 further remove ConversationHolder and cleanup
- 11:28 AM Revision eab688c3 (taxeditor): ref #10186: code cleaning
11/18/2022
- 06:05 PM Revision 25c3d160 (taxeditor): ref #10186: remove conversation holder - continue
- 05:59 PM Revision d3cfcce0 (taxeditor): ref #10186: remove datachangeBehaviour classes
- 05:56 PM Revision 49d3c2dd (taxeditor): ref #10186: remove conversation holder
- 02:22 PM bug #10186 (In Progress): Problems with session handling in taxeditor
- Explaining the already cleaned up code:
SetSelection in setFocus of TaxonNameEditorE4 is not necessary and yields to... - 11:27 AM Revision 9d416700 (taxeditor): cleanup
- 11:25 AM Revision 154d4fe7 (taxeditor): ref #10186 remove ConversationHolder from many forms and some more cleanup (cont.)
- 10:57 AM Revision 8180822f (taxeditor): ref #10186 remove ConversationHolder from many forms and some more cleanup
11/17/2022
- 09:31 PM Revision 14b1eb40 (taxeditor): remove unused E4 temp code
- 09:31 PM Revision a0f770fe (taxeditor): cleanup
- 05:48 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Katja Luther wrote in #note-2:
> The webservice failed because the derived unit had a occurrence status which had no... - 03:27 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- The webservice failed because the derived unit had a occurrence status which had no type.
- 03:28 PM bug #10185 (Duplicate): Missing OccurrenceStatus Type creates NPE when creating DTO
- 11:57 AM bug #10185 (Duplicate): Missing OccurrenceStatus Type creates NPE when creating DTO
- If the Occurrence Status of a specimen does not have a type, the creation of the dto yields to a NPE and nothing is s...
- 02:41 PM Revision fa600854 (taxeditor): ref #10186: setSelection in setFocus is not necessary
- 02:34 PM bug #10186 (Closed): Problems with session handling in taxeditor
- This ticket should contain everything done/tested to fix the session handling problems in the editor, like unsaved ch...
11/16/2022
11/15/2022
- 09:19 PM bug #5284 (Duplicate): [UML] Replace Scope by DefinedTerm in PolytomousKey UML
- This is a duplicate for #9975 as it is automatically implemented there already.
- 09:14 PM task #9975 (Feedback): Create new UML diagramms for the CDM
- Diagrams currently available at https://cybertaxonomy.org/cdm-uml/v532/
- 07:36 PM task #8840: Display identifiers in the dataportal
- This is also an issue for MCL and the MCL taxon id (#10050)
- 03:52 PM feature request #10050 (In Progress): Add missing functionality for MCL CDM dataportal
- 01:19 PM Revision 0ed18126 (taxeditor): cleanup
- 11:07 AM bug #9358: OptionalDataException during HTTP invoker call
- Looks like this problem does not appear so often anymore.
- 11:06 AM bug #8620: Improve pro parte synonym search result for dataportal
- Maybe we can fix this in the performance sprint.
11/14/2022
- 03:34 PM bug #8381: Closing the details view throws widget is disposed exception
- Is this still an open issue? If yes it is probably fast to fix?
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