Activity
From 11/10/2022 to 12/09/2022
12/09/2022
- 02:48 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Andreas Müller wrote in #note-4:
> Can you please review?
>
> This should include checking if term handling (espe... - 02:00 PM bug #10198: Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Can you please review?
This should include checking if term handling (especially removal) in vocabularies still wo... - 12:31 PM bug #10198 (Resolved): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- Applied in changeset commit:cdmlib|d65295b4a60c6f5ce745eb3c07fc4cda88b8c418.
- 12:29 PM bug #10198 (Closed): Termremoval for OrderedTermVocabularies does not work correctly due to incorrect compareTo and orderIndex decrement
- The termTree in OrderedTermVocabulary identifies entries via compareTo. The compareTo for OrderedTerms in the same vo...
- 01:14 PM task #9008: Add chapter "Taxonomic concepts and source citations in the EDIT Platform" to documentation "Manual-EDIT-Platform"
- WGB:
dieses Ticket ist erledigt – der Text war schon längere Zeit in Doku 4; ich habe mir nochmal die Ergänzungen ... - 01:12 PM task #9008 (Closed): Add chapter "Taxonomic concepts and source citations in the EDIT Platform" to documentation "Manual-EDIT-Platform"
12/08/2022
- 11:34 AM bug #10197: Show empty page for delay while updating
- One suggestion would be to clear the view until the update starts and then set the label to "Updating ... " while the...
- 11:22 AM feature request #10133: Improve ontology state vocabularies
- AM:
als nächstes sollten wir uns mal die Duplikate anschauen.
Ich habe mal 2 Excel-Tabelle erstellt mit Duplika...
12/07/2022
- 04:42 PM feature request #10133: Improve ontology state vocabularies
- AM:
Ich habe mir gerade mal angeschaut, wieviele Strukturen in dem Strukturbaum „structures 1.0“ verwendet werden (z... - 01:45 PM feature request #10133: Improve ontology state vocabularies
- AM:
Außerdem habe ich mir die Vokabulare nochmal angeschaut. In „structure in adjective form“ scheinen mire her Ad... - 01:05 PM feature request #10133 (In Progress): Improve ontology state vocabularies
- 01:05 PM feature request #10133: Improve ontology state vocabularies
- NoK:
* 00 Temporal Modifiers“: Die stehen nur unter structures, weil die modifiers nicht implementiert waren, könn... - 03:17 PM bug #10197 (In Progress): Show empty page for delay while updating
- When updating the details views the different parts should show an empty page with an explaining message. Also for ot...
12/06/2022
- 11:30 PM feature request #10133: Improve ontology state vocabularies
- Analyzing the structure tree "structures 1.0" and the structure vocabularies shows that many of the structures in the...
- 09:12 PM feature request #10196: Hybrid structure-state terms
- AM:
Erstmal würde ich mir gerne nochmal ins Gedächtnis zurückrufen, inwiefern Terme beide Eigenschaften (State/Struk... - 05:48 PM feature request #10196 (Closed): Hybrid structure-state terms
- copied from #10133#note-1
some structures can also be used as states in a character matrix. We need to decide how ... - 03:24 PM bug #10195: Character data should be ordered by character tree
- Andreas Müller wrote in #note-7:
> Can you please check how far this is kind of a duplicate for #8657 or any other of... - 02:33 PM bug #10195: Character data should be ordered by character tree
- Can you please check how far this is kind of a duplicate for #8657 or any other of the related tickets or how far the...
- 09:05 AM bug #9629 (In Progress): Better handling of OptionalDataException
- Reopen the ticket because it appeared again:
Hallo,
Caryophyllales_spp, beim Aufruf eines Synonyms aus der Suche:...
12/05/2022
- 02:36 PM feature request #9584 (Resolved): specimen page: character data displayed in details section
- Simple display of the character data added, new ticket created (#10195).
Please review this first implementation. - 02:28 PM feature request #9584: specimen page: character data displayed in details section
- Actually to have the basic information about the existing character data in the portal I would commit the simple impl...
- 02:15 PM feature request #9584: specimen page: character data displayed in details section
- There are implementations of the aggregated descriptions for the taxon page, but both representations missing informa...
- 01:22 PM feature request #9584: specimen page: character data displayed in details section
- NoK:
ja, im Screenshot erscheinen die Characters in alphabetischer Reihenfolge des Character label. Die gewünschte... - 12:20 PM feature request #9584: specimen page: character data displayed in details section
- Actually I use the order used in the dto, need to check how this is created.
Andreas Müller wrote in #note-11:
> Nor... - 12:11 PM feature request #9584: specimen page: character data displayed in details section
- Norbert, can you have a look on the last commit and give a comment if this is an acceptable layout?
Question from ... - 11:07 AM feature request #9584 (In Progress): specimen page: character data displayed in details section
- Displaying the character data in its own table would look like this:
 - 02:35 PM bug #10195 (New): Character data should be ordered by character tree
- The display of the character data in specimen details page and taxon page missing the information about the character...
- 01:18 PM bug #10054: Changes on secundum reference are lost after changing status to basionym
- Older mail from Maryam (2022-08-26) which is maybe related:
I received this email while saving the changes on sec....
12/02/2022
- 09:11 PM feature request #10194 (Resolved): Allow specimens as source for factual data
- 02:47 PM bug #8132 (Worksforme): phycobank cdm-server instance problems with db connections
12/01/2022
- 06:53 PM bug #8132 (Resolved): phycobank cdm-server instance problems with db connections
- To me it seems that this problem did not occur anymore in the last years and we can close the ticket as worksforme.
... - 06:42 PM bug #8170 (New): javax.sql.DataSource.getConnection() implementation in WrappedCdmDataSource does not conform to the interface
- 06:31 PM feature request #10194: Allow specimens as source for factual data
- WGB:
gibt es eigentlich eine Möglichkeit, Specimen sozusagen als Referenz (Voucher) für Faktendaten zu benutzen?
Da... - 06:29 PM feature request #10194 (Closed): Allow specimens as source for factual data
- ... and maybe others.
Think can be handled model side with existing CdmLinkSource or as explicit attribute in Desc... - 09:54 AM bug #10191 (Resolved): Error message on taxon specimen page for non-atomized specimens
- Please review, as test you could use the same taxon on test: https://test.e-taxonomy.eu/dataportal/preview/cichorieae...
- 12:19 AM bug #10193: OutOfMemory exception when exporting mexico flora
- KL, I assigend the ticket to you as you may implement the workaround solution.
If this works we may discuss how to... - 12:17 AM bug #10193 (New): OutOfMemory exception when exporting mexico flora
- When running CDM-l export the OOME occurred after about 85% (see logfile at about line 39.467).
A bit earlier (li...
11/30/2022
- 04:15 PM bug #10191: Error message on taxon specimen page for non-atomized specimens
- This is caused by not atomised specimen, so the fields of the dto are not filled. We could use the summarylabel of th...
- 03:21 PM bug #10190 (Resolved): Invalid argument supplied for foreach() in order_fieldUnitDtos_by_date_and_type()
- please review
- 03:21 PM bug #10190: Invalid argument supplied for foreach() in order_fieldUnitDtos_by_date_and_type()
- The problem was caused by a NPE when the taxon/name of a determination was not set.
- 02:59 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- The Editor must guarantee that OcccurenceStatus.type is never null.
Additionally, we should add NotNull to Occurre... - 10:02 AM bug #10192 (Resolved): External Links do not work in E+M
- I removed the javascript call and add the attribute to open the link in a new tab. Please review.
- 09:55 AM bug #7699: NPE in CdmTransientEntityCacher.getCacheElement()
- Now an explicit error is thrown with message "No cache available for cacheId = xxx" and some debug information.
For n... - 08:51 AM bug #7699 (In Progress): NPE in CdmTransientEntityCacher.getCacheElement()
- 08:38 AM bug #9174 (Duplicate): After longer inactivity NPE for cache
- This seems to be a duplicate for #7699
11/29/2022
- 07:04 PM feature request #10156: Show field unit media in taxon image galleries
- I guess this can not be handled in the current milestone, but maybe in the next one.
- 12:48 PM bug #10192 (In Progress): External Links do not work in E+M
- The problem comes from the call of "drupal_strip_dangerous_protocols("JavaScript:popupExternalLinks('url'))" inside l...
11/28/2022
- 01:23 PM task #10183 (Closed): Import Buxales via Cdm2Cdm
- 12:10 PM bug #10182 (In Progress): Portal does not show typespecimen for duplicated typedesignation
- 12:07 PM bug #10192 (Closed): External Links do not work in E+M
- NaK:
die Externen Such-Links aus E+M funktionieren teilweise nicht, hinter dem Taxon-Namen bleibt immer ein Anführ... - 12:04 PM bug #10186: Problems with session handling in taxeditor
- Andreas Müller wrote in #note-7:
> A critical issue: In AbstractCdmEditorPartE4 line 182 it is checked if (new) sele...
11/25/2022
- 10:02 AM bug #10191 (Closed): Error message on taxon specimen page for non-atomized specimens
- Message is: Uninitialized string offset: -1 in drupal_substr() (line 640 of /var/www/drupal-7-cdm-dataportal/web/incl...
- 09:59 AM bug #10190 (Closed): Invalid argument supplied for foreach() in order_fieldUnitDtos_by_date_and_type()
- This exception appears for
https://cichorieae.e-taxonomy.net/portal/cdm_dataportal/taxon/ecb7a76e-694a-4706-b1ab-...
11/24/2022
- 06:16 PM task #10189 (Resolved): Split CdmApplicationController into repository and application part
- please review
- 06:05 PM task #10189 (Closed): Split CdmApplicationController into repository and application part
- The application part is only for local applications supporting transactions etc. while the repository part can be use...
- 11:07 AM bug #10188 (New): Allow moving large subtrees
- Currently it is not possible to move large subtrees in the TaxEditors due to memory issues during treeindex updating....
11/23/2022
- 12:29 PM bug #10186: Problems with session handling in taxeditor
- A critical issue: In AbstractCdmEditorPartE4 line 182 it is checked if (new) selection equals the previous selection....
11/22/2022
- 03:09 PM task #10187 (New): Use only 1 service call to initialize supplemental data
- Currently for initializing supplemental data of e.g. a synonym in TaxEditor 7 services calls appear, 1 for each data ...
11/18/2022
- 02:22 PM bug #10186 (In Progress): Problems with session handling in taxeditor
- Explaining the already cleaned up code:
SetSelection in setFocus of TaxonNameEditorE4 is not necessary and yields to...
11/17/2022
- 05:48 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- Katja Luther wrote in #note-2:
> The webservice failed because the derived unit had a occurrence status which had no... - 03:27 PM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- The webservice failed because the derived unit had a occurrence status which had no type.
- 03:28 PM bug #10185 (Duplicate): Missing OccurrenceStatus Type creates NPE when creating DTO
- 11:57 AM bug #10185 (Duplicate): Missing OccurrenceStatus Type creates NPE when creating DTO
- If the Occurrence Status of a specimen does not have a type, the creation of the dto yields to a NPE and nothing is s...
- 02:34 PM bug #10186 (Closed): Problems with session handling in taxeditor
- This ticket should contain everything done/tested to fix the session handling problems in the editor, like unsaved ch...
11/15/2022
- 09:19 PM bug #5284 (Duplicate): [UML] Replace Scope by DefinedTerm in PolytomousKey UML
- This is a duplicate for #9975 as it is automatically implemented there already.
- 09:14 PM task #9975 (Feedback): Create new UML diagramms for the CDM
- Diagrams currently available at https://cybertaxonomy.org/cdm-uml/v532/
- 07:36 PM task #8840: Display identifiers in the dataportal
- This is also an issue for MCL and the MCL taxon id (#10050)
- 03:52 PM feature request #10050 (In Progress): Add missing functionality for MCL CDM dataportal
- 11:07 AM bug #9358: OptionalDataException during HTTP invoker call
- Looks like this problem does not appear so often anymore.
- 11:06 AM bug #8620: Improve pro parte synonym search result for dataportal
- Maybe we can fix this in the performance sprint.
11/14/2022
- 03:34 PM bug #8381: Closing the details view throws widget is disposed exception
- Is this still an open issue? If yes it is probably fast to fix?
11/10/2022
- 01:52 PM task #10183 (Resolved): Import Buxales via Cdm2Cdm
- 01:42 PM task #10183 (Closed): Import Buxales via Cdm2Cdm
- From Flora Cuba to new Buxales DB
Open issue:
* ~~UUIDs are still the same as in Flora Cuba which is not correc...
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