Activity
From 10/14/2022 to 11/12/2022
11/11/2022
- 04:48 PM Revision 15ac03a5 (cdmlib-apps): ref #10048 add source to distributions and handle MCL-number as identifier
- 02:41 PM Revision c9b9c655 (cdmlib-apps): ref #10048 add MCL destination
- 02:40 PM Revision e111b15c (cdmlib-apps): ref #10048 cleanup and rename presenceAbsence terms for MCL
- 02:38 PM Revision c4032e64 (cdmlib-apps): ref #10048 distribution import for MCL
- 02:37 PM Revision d249946f (cdmlib): ref #10048 some term and voc uuids for MCL import and usage of Distribution
- 02:35 PM Revision e360bed5 (cdmlib): ref #10048 make PresenceAbsenceTerm uuids public for MCL import
- 01:41 PM Revision 7e2e67a0 (cdmlib-apps): cleanup
- 01:39 PM Revision adad498c (cdmlib): cleanup
- 01:37 PM Revision db4d3543 (cdmlib): ref #10048 use OrderedTermVocabulary in getNamedAreaLevel
11/10/2022
- 06:21 PM Revision 61ea5c2d (cdmlib-apps): ref #2934 some adaptations for Moose import
- 03:54 PM Revision 8fe0cb9f (cdmlib-apps): cleanup
- 03:50 PM Revision c5ed5599 (cdmlib-apps): ref #10048 exclude name facts for MCL
- 03:49 PM Revision 6fc1d869 (cdmlib-apps): ref #10048 handle differing nomStatusFks for MCL
- 03:48 PM Revision 72296cbb (cdmlib): cleanup
- 03:48 PM Revision e3524064 (cdmlib): ref #10048, ref # 10170 add static method for nom. & orth. cons.
- 03:47 PM Revision 014ae691 (cdmlib): ref #10048 handle differing nomStatusFks for MCL
- 02:59 PM Revision 2ebf0e13 (cdmlib-apps): ref #10048 add MclActivator and normalize users
- 02:57 PM Revision 2517f189 (cdmlib-apps): cleanup
- 01:52 PM task #10183 (Resolved): Import Buxales via Cdm2Cdm
- 01:42 PM task #10183 (Closed): Import Buxales via Cdm2Cdm
- From Flora Cuba to new Buxales DB
Open issue:
* ~~UUIDs are still the same as in Flora Cuba which is not correc... - 01:50 PM Revision ed7e5b0d (cdmlib): ref #10183 deduplicate terms for findByUuidWithoutFlush
- 01:48 PM Revision 35e07b85 (cdmlib): ref #10183 adapt Cdm2CdmImportBase to latest model changes and correct type designation handling
- 01:46 PM Revision ba1622fa (cdmlib): cleanup
- 01:44 PM Revision 316d0e5e (cdmlib-apps): ref #10183 add BuxalesExportActivator
11/09/2022
- 11:40 AM bug #10182: Portal does not show typespecimen for duplicated typedesignation
- The webservice to get the specimen_dto of the typespecimen returns false.
- 11:39 AM bug #10182 (Closed): Portal does not show typespecimen for duplicated typedesignation
- mail NadjaK:
wenn ich einen Typus über „Create type duplicate“ dupliziere, wird das im Portal nicht angezeigt.
...
11/08/2022
- 10:47 AM bug #10181 (New): Search images do not show thumbnails
- Observed for flora of cyprus.
E.g. search for Althenia filiformis shows large images
: cleanup
- 01:39 PM Revision 82772656 (cdmlib): cleanup
10/29/2022
10/28/2022
- 05:46 PM bug #10175 (Closed): IllegalStateException when more than 10 exceptions in UpdateResult
- I tested with Alyssum minus in E+M on test and the problem does not exist anymore.
- 05:40 PM bug #10177 (Closed): Problems with initializing collections
- AM:
es kann sein, dass das Problem jetzt gelöst ist, allerdings ist das unsicher, weil es ein bisschen schwierig z... - 03:38 PM bug #10177 (Resolved): Problems with initializing collections
- This is maybe fixed with the given commit.
- 05:37 PM bug #10172 (Closed): Registration not found in phycobank portal though it exists
- The data is also cleaned now so I guess we can close this ticket.
- 01:02 PM bug #10172: Registration not found in phycobank portal though it exists
- Also check that specific identifier and identifier match
~~~
SELECT r.*
FROM Registration r
WHERE r.identifie... - 05:35 PM feature request #10170 (Closed): Create nom. status nom. & orth. cons.
- 05:22 PM bug #3536 (Closed): Incorrect last version documentation for Editor
- After having deleted the file manually it did not reappear after new version was installed. So this should be fixed.
- 05:12 PM Revision 583a9ebb (taxeditor): minor
- 03:41 PM Revision 564de11a (cdm-server): Merge branch 'release/5.34.0' into develop
- 03:41 PM Revision 1e3775a4 (cdm-server): jenkins merging release branch into master (strategy: theirs)
- 03:40 PM Revision 900e85d0 (cdm-server): updating poms for branch'release/5.34.0' with non-snapshot versions
- 03:40 PM Revision b8f4e8fd (cdm-webapp): Merge branch 'release/5.34.0' into develop
- 03:40 PM Revision 485df5c6 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
- 03:40 PM Revision f861eee4 (cdm-webapp): updating poms for branch'release/5.34.0' with non-snapshot versions
- 03:39 PM Revision 4e9c05e8 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.34.0
- 03:39 PM Revision c41eb799 (cdm-vaadin): Merge branch 'release/5.34.0' into develop
- 03:39 PM Revision 3a0a62cb (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
- 03:39 PM Revision 2d6a8159 (taxeditor): Merge branch 'release/5.34.0' into develop
- 03:39 PM Revision 2c320028 (taxeditor): Merge branch 'release/5.34.0'
- 03:36 PM Revision 3a3d237a (cdm-dataportal): Merge branch 'release/5.34.0' into develop
- 03:36 PM Revision b492b91e (cdm-dataportal): updating poms for branch'release/5.34.0' with non-snapshot versions
- 03:36 PM Revision b25efd34 (cdm-vaadin): updating poms for branch'release/5.34.0' with non-snapshot versions
- 03:36 PM Revision 83dbb470 (cdm-dataportal): release-preparation: production level css
- 03:36 PM Revision f546243c (cdm-vaadin): jenkins bumping cdmlib.version to 5.34.0
- 03:35 PM Revision a096c31c (cdmlib): Updating develop poms back to pre merge state
- 03:35 PM Revision bb599fbc (cdmlib): Merge branch 'master' into develop
- 03:35 PM Revision cf13f86a (cdmlib): updating develop poms to master versions to avoid merge conflicts
- 03:35 PM Revision e79c9ddd (cdmlib): Merge branch 'release/5.34.0'
- 03:22 PM Revision e05a324f (cdmlib): updating poms for branch'release/5.34.0' with non-snapshot versions
- 02:21 PM Revision b41dd31a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.34.0-SNAPSHOT
- 02:21 PM Revision fcbbd280 (cdm-webapp): updating poms for 5.35.0-SNAPSHOT development
- 02:21 PM Revision 7aac43a0 (cdm-webapp): updating poms for 5.34.0 branch with snapshot versions
- 02:21 PM Revision 86ba7c81 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.35.0-SNAPSHOT
- 02:21 PM Revision f1cda655 (taxeditor): Updated version in pom / project files to taxeditor version : 5.35.0-SNAPSHOT and cdmlib version : 5.35.0-SNAPSHOT
- 02:20 PM Revision 0f57e740 (taxeditor): Updated version in pom / project files to taxeditor version : 5.34.0 and cdmlib version : 5.34.0
- 02:19 PM Revision c0448d52 (cdm-vaadin): jenkins bumping cdmlib.version to 5.34.0-SNAPSHOT
- 02:19 PM Revision 8530424b (cdm-vaadin): updating poms for 5.35.0-SNAPSHOT development
- 02:19 PM Revision 2b91686b (cdm-vaadin): updating poms for 5.34.0 branch with snapshot versions
- 02:19 PM Revision 789c98d4 (cdm-vaadin): jenkins bumping cdmlib.version to 5.35.0-SNAPSHOT
- 02:19 PM Revision 8c346830 (cdm-dataportal): updating poms for 5.35.0-SNAPSHOT development
- 02:19 PM Revision a5dd47a5 (cdm-server): updating poms for 5.35.0-SNAPSHOT development
- 02:15 PM Revision f1c984a6 (cdmlib): updating poms for 5.35.0-SNAPSHOT development
- 11:58 AM Revision 90a694f5 (cdmlib): add registration service and registrationWorkingsetService to httpInvoker (cont.)
- 11:26 AM Revision 1f1da8f2 (cdmlib): cleanup
- 11:25 AM Revision fdba026b (cdmlib): add registration service and registrationWorkingsetService to httpInvoker
- 11:16 AM Revision 97d6c9ca (cdmlib): cleanup
- 10:01 AM Revision 92d3c30c (taxeditor): add registrationWorkingSet service to CdmApplicationRemoteConfiguration
- 10:01 AM Revision 5566b355 (taxeditor): cleanup
10/27/2022
- 10:52 PM Revision bf5ebce1 (cdmlib): cleanup
- 10:51 PM Revision e54f241c (cdmlib): add registrationWorkingSetService to ICdmRepository
- 10:44 PM bug #10172 (Resolved): Registration not found in phycobank portal though it exists
- Sent mail to WHK to clean the data itself. I guess we can close this ticket if we do not want to improve the error ha...
- 10:21 PM bug #10172: Registration not found in phycobank portal though it exists
- ~~~
SELECT r.identifier
FROM Registration r
GROUP BY r.identifier
HAVING COUNT(*) > 1
~~~ - 10:13 PM bug #10172 (In Progress): Registration not found in phycobank portal though it exists
- The problem is that for http://phycobank.org/100097 exist 2 registrations with status "published". This is not allowe...
- 09:31 PM Revision b03736a2 (cdmlib): ref #10172 handle duplicate identifiers and no matches correctly in registration controller
- 09:26 PM Revision f9e3acc4 (cdmlib): cleanup
- 07:40 PM Revision d67e2f66 (cdmlib-apps): ref #10072 upgrade cdmlib-pesi to log4j2 (not yet adapted properties files) and cleanup
- 03:14 PM Revision 73c7e723 (cdmlib): ref #10161 fix includeSeparatorAfter handling if no nom.status exists
- 03:13 PM Revision 6b0052e3 (cdmlib): cleanup
- 02:31 PM feature request #10161 (Resolved): Deduplicate nom. status in publication if there are >1 entries with same status
- 02:31 PM feature request #10161 (Closed): Deduplicate nom. status in publication if there are >1 entries with same status
- Partly rejected as deduplication creates problems if sources are attached in future. Should be handled in data itself...
- 02:18 PM feature request #10161: Deduplicate nom. status in publication if there are >1 entries with same status
- Andreas Müller wrote in #note-3:
> WGB:
>
> Im Search treten da dann auch noch zwei Kommata auf:
fixed with co... - 02:27 PM Revision 8fff34ab (cdmlib): improve handling of includeSeparatorBefore for nom. status handling in NameCacheStrategyBase
- 02:14 PM Revision a661c6a4 (cdmlib): ref #10161 fix duplicated comma in taxon caches with >1 nom. status.
- 02:14 PM Revision 63c21546 (cdmlib): cleanup
- 02:13 PM Revision 3e8d61ff (cdmlib): ref #10161 defined order for multiple nom. status
- 01:16 PM feature request #10170: Create nom. status nom. & orth. cons.
- Before closing we still need to adapt existing data (#10161#note-4)
- 01:12 PM feature request #10170 (Resolved): Create nom. status nom. & orth. cons.
- Applied in changeset commit:cdmlib|77ac15b15d9f01047f770e0f25ca58b74c2efead.
- 01:04 PM feature request #10170 (In Progress): Create nom. status nom. & orth. cons.
- 01:04 PM feature request #10170: Create nom. status nom. & orth. cons.
- UUID in E+M is '0f838183-ffa0-4014-928e-0e3a27eb3918'
- 01:12 PM Revision 77ac15b1 (cdmlib): fix #10170 add combined nom. status 'nom. & orth. cons.'
- 11:34 AM bug #10137 (Closed): Compressed table does not show derivates anymore
- Andreas Müller wrote in #note-17:
> Katja Luther wrote in #note-14:
> > ...
> > I did not find any tests, but mayb... - 11:33 AM bug #10180 (New): Write test for specimen compressed table
- Write tests for the compressed table:
- all specimens available
- all icons shown
- all informations available
... - 11:31 AM bug #10179 (New): Show collapse/expand icon in compressed table
- The compressed table contains a column for expand/collapse icon, but the icon is not visible, but should.
- 11:27 AM task #7404 (Closed): Add linux and mac to editor installation documentation
- The mentioned issues added to the doc files, so we can close this ticket.
- 11:04 AM Revision 149c59a9 (cdmlib): ref #9185 set loglevel to debug for NPE in DateHeaderFilter
- 11:04 AM Revision 6fe638da (cdmlib): cleanup
- 10:11 AM feature request #10178: Implement fuzzy name matching
- - The algorithm Taxamatch described by Rees (2014) employs a Modified Damerau-Levenshtein Distance in addition to tw...
10/26/2022
- 07:42 PM feature request #10178 (In Progress): Implement fuzzy name matching
- Not only for single name requests but also for long lists of names.
Tony Rees: https://pubmed.ncbi.nlm.nih.gov/2... - 06:13 PM task #10174 (In Progress): Export data to BfN
- 01:15 PM Revision cd7d5ac2 (taxeditor): ref #10177: add names only once to the list of namesToBeSaved
- 01:15 PM bug #10177 (Closed): Problems with initializing collections
- The stacktrace points to problems with hybrid children...
mail ERS:
~~~
last remote method : https://api.cyber... - 11:39 AM feature request #10176 (New): Add editor/view and edited object in exception string
- The copy error functionality is quiet useful but should contain the view and the edited object if available.
10/25/2022
- 02:27 PM bug #10175: IllegalStateException when more than 10 exceptions in UpdateResult
- This should be fixed. I replaced ArrayBlockingQueue by CircularFifoQueue from commons-collections4 which is similar t...
- 02:23 PM bug #10175 (Resolved): IllegalStateException when more than 10 exceptions in UpdateResult
- Applied in changeset commit:cdmlib|31406db107c5c237ef4a2eac0353ac25e00c18b6.
- 01:34 PM bug #10175 (Closed): IllegalStateException when more than 10 exceptions in UpdateResult
- This is because the queue is implemented as an array (https://codechacha.com/en/java-arrayblockingqueue/) and trying ...
- 02:23 PM Revision 31406db1 (cdmlib): fix #10175 replace ArrayBlockingQueue by CircularFifoQueue (commons-collecions4 , ref #10009
10/24/2022
- 08:50 PM task #10174: Export data to BfN
~~~
SELECT CASE WHEN orderIndex < 34 THEN CONCAT(RANK, ' ', VOLLNAME) ELSE VOLLNAME END VOLLNAME, TAXON_ID,
-- RAN...- 06:26 PM task #10174 (Closed): Export data to BfN
- for testing BfN import
Open Issues:
* homonyms
* MAN
* pesi
10/18/2022
- 06:32 PM bug #10172 (Closed): Registration not found in phycobank portal though it exists
- e.g. http://phycobank.org/100097
~~I guess also https://phycobank.org/100172 and https://www.phycobank.org/cdm_dat... - 06:28 PM feature request #10171 (New): Show registration identifiers on name pages
- E.g. on https://www.phycobank.org/cdm_dataportal/name/65a02957-c03f-455c-94dd-2ab01239a365/null/null/ the regID for ...
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