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From 09/30/2022 to 10/29/2022

10/29/2022

10:24 AM feature request #10161 (Closed): Deduplicate nom. status in publication if there are >1 entries with same status
Andreas Müller

10/28/2022

05:46 PM bug #10175 (Closed): IllegalStateException when more than 10 exceptions in UpdateResult
I tested with Alyssum minus in E+M on test and the problem does not exist anymore. Andreas Müller
05:40 PM bug #10177 (Closed): Problems with initializing collections
AM:
es kann sein, dass das Problem jetzt gelöst ist, allerdings ist das unsicher, weil es ein bisschen schwierig z...
Andreas Müller
03:38 PM bug #10177 (Resolved): Problems with initializing collections
This is maybe fixed with the given commit. Andreas Müller
05:37 PM bug #10172 (Closed): Registration not found in phycobank portal though it exists
The data is also cleaned now so I guess we can close this ticket. Andreas Müller
01:02 PM bug #10172: Registration not found in phycobank portal though it exists
Also check that specific identifier and identifier match
~~~
SELECT r.*
FROM Registration r
WHERE r.identifie...
Andreas Müller
05:35 PM feature request #10170 (Closed): Create nom. status nom. & orth. cons.
Andreas Müller
05:22 PM bug #3536 (Closed): Incorrect last version documentation for Editor
After having deleted the file manually it did not reappear after new version was installed. So this should be fixed. Andreas Müller
05:12 PM Revision 583a9ebb (taxeditor): minor
Andreas Müller
03:41 PM Revision 564de11a (cdm-server): Merge branch 'release/5.34.0' into develop
jenkins
03:41 PM Revision 1e3775a4 (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
03:40 PM Revision 900e85d0 (cdm-server): updating poms for branch'release/5.34.0' with non-snapshot versions
jenkins
03:40 PM Revision b8f4e8fd (cdm-webapp): Merge branch 'release/5.34.0' into develop
jenkins
03:40 PM Revision 485df5c6 (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
03:40 PM Revision f861eee4 (cdm-webapp): updating poms for branch'release/5.34.0' with non-snapshot versions
jenkins
03:39 PM Revision 4e9c05e8 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.34.0
jenkins
03:39 PM Revision c41eb799 (cdm-vaadin): Merge branch 'release/5.34.0' into develop
jenkins
03:39 PM Revision 3a0a62cb (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
03:39 PM Revision 2d6a8159 (taxeditor): Merge branch 'release/5.34.0' into develop
jenkins
03:39 PM Revision 2c320028 (taxeditor): Merge branch 'release/5.34.0'
jenkins
03:36 PM Revision 3a3d237a (cdm-dataportal): Merge branch 'release/5.34.0' into develop
jenkins
03:36 PM Revision b492b91e (cdm-dataportal): updating poms for branch'release/5.34.0' with non-snapshot versions
jenkins
03:36 PM Revision b25efd34 (cdm-vaadin): updating poms for branch'release/5.34.0' with non-snapshot versions
jenkins
03:36 PM Revision 83dbb470 (cdm-dataportal): release-preparation: production level css
jenkins
03:36 PM Revision f546243c (cdm-vaadin): jenkins bumping cdmlib.version to 5.34.0
jenkins
03:35 PM Revision a096c31c (cdmlib): Updating develop poms back to pre merge state
jenkins
03:35 PM Revision bb599fbc (cdmlib): Merge branch 'master' into develop
jenkins
03:35 PM Revision cf13f86a (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:35 PM Revision e79c9ddd (cdmlib): Merge branch 'release/5.34.0'
jenkins
03:22 PM Revision e05a324f (cdmlib): updating poms for branch'release/5.34.0' with non-snapshot versions
jenkins
02:21 PM Revision b41dd31a (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.34.0-SNAPSHOT
jenkins
02:21 PM Revision fcbbd280 (cdm-webapp): updating poms for 5.35.0-SNAPSHOT development
jenkins
02:21 PM Revision 7aac43a0 (cdm-webapp): updating poms for 5.34.0 branch with snapshot versions
jenkins
02:21 PM Revision 86ba7c81 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.35.0-SNAPSHOT
jenkins
02:21 PM Revision f1cda655 (taxeditor): Updated version in pom / project files to taxeditor version : 5.35.0-SNAPSHOT and cdmlib version : 5.35.0-SNAPSHOT
jenkins
02:20 PM Revision 0f57e740 (taxeditor): Updated version in pom / project files to taxeditor version : 5.34.0 and cdmlib version : 5.34.0
jenkins
02:19 PM Revision c0448d52 (cdm-vaadin): jenkins bumping cdmlib.version to 5.34.0-SNAPSHOT
jenkins
02:19 PM Revision 8530424b (cdm-vaadin): updating poms for 5.35.0-SNAPSHOT development
jenkins
02:19 PM Revision 2b91686b (cdm-vaadin): updating poms for 5.34.0 branch with snapshot versions
jenkins
02:19 PM Revision 789c98d4 (cdm-vaadin): jenkins bumping cdmlib.version to 5.35.0-SNAPSHOT
jenkins
02:19 PM Revision 8c346830 (cdm-dataportal): updating poms for 5.35.0-SNAPSHOT development
jenkins
02:19 PM Revision a5dd47a5 (cdm-server): updating poms for 5.35.0-SNAPSHOT development
jenkins
02:15 PM Revision f1c984a6 (cdmlib): updating poms for 5.35.0-SNAPSHOT development
jenkins
11:58 AM Revision 90a694f5 (cdmlib): add registration service and registrationWorkingsetService to httpInvoker (cont.)
Andreas Müller
11:26 AM Revision 1f1da8f2 (cdmlib): cleanup
Andreas Müller
11:25 AM Revision fdba026b (cdmlib): add registration service and registrationWorkingsetService to httpInvoker
Andreas Müller
11:16 AM Revision 97d6c9ca (cdmlib): cleanup
Andreas Müller
10:01 AM Revision 92d3c30c (taxeditor): add registrationWorkingSet service to CdmApplicationRemoteConfiguration
Andreas Müller
10:01 AM Revision 5566b355 (taxeditor): cleanup
Andreas Müller

10/27/2022

10:52 PM Revision bf5ebce1 (cdmlib): cleanup
Andreas Müller
10:51 PM Revision e54f241c (cdmlib): add registrationWorkingSetService to ICdmRepository
Andreas Müller
10:44 PM bug #10172 (Resolved): Registration not found in phycobank portal though it exists
Sent mail to WHK to clean the data itself. I guess we can close this ticket if we do not want to improve the error ha... Andreas Müller
10:21 PM bug #10172: Registration not found in phycobank portal though it exists
~~~
SELECT r.identifier
FROM Registration r
GROUP BY r.identifier
HAVING COUNT(*) > 1
~~~
Andreas Müller
10:13 PM bug #10172 (In Progress): Registration not found in phycobank portal though it exists
The problem is that for http://phycobank.org/100097 exist 2 registrations with status "published". This is not allowe... Andreas Müller
09:31 PM Revision b03736a2 (cdmlib): ref #10172 handle duplicate identifiers and no matches correctly in registration controller
Andreas Müller
09:26 PM Revision f9e3acc4 (cdmlib): cleanup
Andreas Müller
07:40 PM Revision d67e2f66 (cdmlib-apps): ref #10072 upgrade cdmlib-pesi to log4j2 (not yet adapted properties files) and cleanup
Andreas Müller
03:14 PM Revision 73c7e723 (cdmlib): ref #10161 fix includeSeparatorAfter handling if no nom.status exists
Andreas Müller
03:13 PM Revision 6b0052e3 (cdmlib): cleanup
Andreas Müller
02:31 PM feature request #10161 (Resolved): Deduplicate nom. status in publication if there are >1 entries with same status
Andreas Müller
02:31 PM feature request #10161 (Closed): Deduplicate nom. status in publication if there are >1 entries with same status
Partly rejected as deduplication creates problems if sources are attached in future. Should be handled in data itself... Andreas Müller
02:18 PM feature request #10161: Deduplicate nom. status in publication if there are >1 entries with same status
Andreas Müller wrote in #note-3:
> WGB:
>
> Im Search treten da dann auch noch zwei Kommata auf:
fixed with co...
Andreas Müller
02:27 PM Revision 8fff34ab (cdmlib): improve handling of includeSeparatorBefore for nom. status handling in NameCacheStrategyBase
Andreas Müller
02:14 PM Revision a661c6a4 (cdmlib): ref #10161 fix duplicated comma in taxon caches with >1 nom. status.
Andreas Müller
02:14 PM Revision 63c21546 (cdmlib): cleanup
Andreas Müller
02:13 PM Revision 3e8d61ff (cdmlib): ref #10161 defined order for multiple nom. status
Andreas Müller
01:16 PM feature request #10170: Create nom. status nom. & orth. cons.
Before closing we still need to adapt existing data (#10161#note-4) Andreas Müller
01:12 PM feature request #10170 (Resolved): Create nom. status nom. & orth. cons.
Applied in changeset commit:cdmlib|77ac15b15d9f01047f770e0f25ca58b74c2efead. Andreas Müller
01:04 PM feature request #10170 (In Progress): Create nom. status nom. & orth. cons.
Andreas Müller
01:04 PM feature request #10170: Create nom. status nom. & orth. cons.
UUID in E+M is '0f838183-ffa0-4014-928e-0e3a27eb3918' Andreas Müller
01:12 PM Revision 77ac15b1 (cdmlib): fix #10170 add combined nom. status 'nom. & orth. cons.'
Andreas Müller
11:34 AM bug #10137 (Closed): Compressed table does not show derivates anymore
Andreas Müller wrote in #note-17:
> Katja Luther wrote in #note-14:
> > ...
> > I did not find any tests, but mayb...
Katja Luther
11:33 AM bug #10180 (New): Write test for specimen compressed table
Write tests for the compressed table:
- all specimens available
- all icons shown
- all informations available
...
Katja Luther
11:31 AM bug #10179 (New): Show collapse/expand icon in compressed table
The compressed table contains a column for expand/collapse icon, but the icon is not visible, but should. Katja Luther
11:27 AM task #7404 (Closed): Add linux and mac to editor installation documentation
The mentioned issues added to the doc files, so we can close this ticket. Katja Luther
11:04 AM Revision 149c59a9 (cdmlib): ref #9185 set loglevel to debug for NPE in DateHeaderFilter
Andreas Müller
11:04 AM Revision 6fe638da (cdmlib): cleanup
Andreas Müller
10:11 AM feature request #10178: Implement fuzzy name matching
- The algorithm Taxamatch described by Rees (2014) employs a Modified Damerau-Levenshtein Distance in addition to tw... Belen Escobari

10/26/2022

07:42 PM feature request #10178 (In Progress): Implement fuzzy name matching
Not only for single name requests but also for long lists of names.
Tony Rees: https://pubmed.ncbi.nlm.nih.gov/2...
Andreas Müller
06:13 PM task #10174 (In Progress): Export data to BfN
Andreas Müller
01:15 PM Revision cd7d5ac2 (taxeditor): ref #10177: add names only once to the list of namesToBeSaved
Katja Luther
01:15 PM bug #10177 (Closed): Problems with initializing collections
The stacktrace points to problems with hybrid children...
mail ERS:
~~~
last remote method : https://api.cyber...
Katja Luther
11:39 AM feature request #10176 (New): Add editor/view and edited object in exception string
The copy error functionality is quiet useful but should contain the view and the edited object if available. Katja Luther

10/25/2022

02:27 PM bug #10175: IllegalStateException when more than 10 exceptions in UpdateResult
This should be fixed. I replaced ArrayBlockingQueue by CircularFifoQueue from commons-collections4 which is similar t... Andreas Müller
02:23 PM bug #10175 (Resolved): IllegalStateException when more than 10 exceptions in UpdateResult
Applied in changeset commit:cdmlib|31406db107c5c237ef4a2eac0353ac25e00c18b6. Andreas Müller
01:34 PM bug #10175 (Closed): IllegalStateException when more than 10 exceptions in UpdateResult
This is because the queue is implemented as an array (https://codechacha.com/en/java-arrayblockingqueue/) and trying ... Katja Luther
02:23 PM Revision 31406db1 (cdmlib): fix #10175 replace ArrayBlockingQueue by CircularFifoQueue (commons-collecions4 , ref #10009
Andreas Müller

10/24/2022

08:50 PM task #10174: Export data to BfN

~~~
SELECT CASE WHEN orderIndex < 34 THEN CONCAT(RANK, ' ', VOLLNAME) ELSE VOLLNAME END VOLLNAME, TAXON_ID,
-- RAN...
Andreas Müller
06:26 PM task #10174 (Closed): Export data to BfN
for testing BfN import
Open Issues:
* homonyms
* MAN
* pesi
Andreas Müller

10/18/2022

06:32 PM bug #10172 (Closed): Registration not found in phycobank portal though it exists
e.g. http://phycobank.org/100097
~~I guess also https://phycobank.org/100172 and https://www.phycobank.org/cdm_dat...
Andreas Müller
06:28 PM feature request #10171 (New): Show registration identifiers on name pages
E.g. on https://www.phycobank.org/cdm_dataportal/name/65a02957-c03f-455c-94dd-2ab01239a365/null/null/ the regID for ... Andreas Müller

10/13/2022

04:55 PM Revision 6450c8b1 (taxeditor): cleanup
Andreas Müller
04:55 PM Revision 1ae915a9 (taxeditor): ref #10055 adapt commons-text to 1.10.0 in taxeditor (cont.)
Andreas Müller
03:49 PM Revision 1675ee33 (cdmlib): ref #10055 adapt commons-text to 1.10.0 in cdmlib
Andreas Müller
03:48 PM Revision d18929a8 (taxeditor): ref #10055 adapt commons-text to 1.10.0 in taxeditor
Andreas Müller
09:36 AM feature request #10170 (Closed): Create nom. status nom. & orth. cons.
copied from #10161#note-4
use uuid from E+M and check if other DBs do have this status already before implementation.
Andreas Müller

10/12/2022

03:38 PM feature request #10161: Deduplicate nom. status in publication if there are >1 entries with same status
AM:
Bei E+M machen wir das alternativ so, dass es einen zusätzlichen Status „nom. & orth. cons.“ haben. Das finde ic...
Andreas Müller
03:32 PM feature request #10161: Deduplicate nom. status in publication if there are >1 entries with same status
WGB:
Im Search treten da dann auch noch zwei Kommata auf:
![](clipboard-202210121532-m0efc.png)
Andreas Müller
03:31 PM feature request #10161: Deduplicate nom. status in publication if there are >1 entries with same status
We may also "deduplicate" "nom. cons., orth. cons." to "nom. & orth. cons." (required e.g. for cuba). Alternatively w... Andreas Müller
03:27 PM bug #10155: Preference for default language of shown representations
Now, the language shown in flora-cuba as default is Gwich'in which is for sure not the expected one. Also the list se... Andreas Müller
09:34 AM bug #10114 (Closed): Problem with parser for author string with whitespace between initials
Also the sortindex updater works as expected now.
Andreas Müller
09:25 AM bug #10163: Fix label for "Orthography Conserved" and "Conserved Desig"
~~~
SELECT ns.id, tn.fullTitleCache, tn.created, tn.createdBy_id, tn.updated
FROM DefinedTermBase dtb INNER JOIN ...
Andreas Müller
08:47 AM bug #10163: Fix label for "Orthography Conserved" and "Conserved Desig"
Andreas Müller wrote in #note-3:
> Still needs to switch to schema version 5.33 and after release check databases fo...
Andreas Müller
08:26 AM bug #10163 (Closed): Fix label for "Orthography Conserved" and "Conserved Desig"
This seems to work as expected now. Andreas Müller
09:08 AM bug #10137: Compressed table does not show derivates anymore
Katja Luther wrote in #note-14:
> ...
> I did not find any tests, but maybe it is easier to write the tests on cdml...
Andreas Müller
09:06 AM bug #10137: Compressed table does not show derivates anymore
Katja Luther wrote in #note-13:
>...
> I will create a new ticket to think about how we can do this in a better way, ...
Andreas Müller
08:54 AM bug #10169 (Closed): Exception when collapse and reopen language tree in preferences after deselect
Works as expected now. Andreas Müller
08:49 AM bug #10130 (Closed): Error Message in dataportal
Andreas Müller wrote in #note-4:
> Sorry, I didn't see that this is solved already. So probably we do not necessaril...
Andreas Müller

10/11/2022

06:02 PM Revision 5d3d2f41 (taxeditor): ref #10055, ref #10072 upgrade to log4j2 2.19.0 in taxeditor
Andreas Müller
06:00 PM Revision 24cddd2e (cdm-server): ref #10055, ref #10072 upgrade to log4j2 2.19.0 in cdmserver
Andreas Müller
06:00 PM Revision d2106d33 (cdm-dataportal): ref #10055, ref #10072 upgrade to log4j2 2.19.0 in dataportal
Andreas Müller
05:58 PM Revision 517fdd76 (cdmlib): ref #10055, ref #10072 upgrade to log4j2 2.19.0 in cdmlib
Andreas Müller
05:44 PM bug #10167: Selecting an existing name and adding a new journal does not work for phycobank registration
WHK:
Ich habe jetzt als Submitter mit beschränkten Rechten ein paar Fälle getestet. Inzwischen geht dort Einiges a...
Andreas Müller
01:58 PM bug #3536 (In Progress): Incorrect last version documentation for Editor
Unfortunately this still did not work. The URL still exists. Andreas Müller

10/10/2022

03:19 PM Revision 1210a8a7 (cdm-server): Merge branch 'release/5.33.0' into develop
jenkins
03:19 PM Revision 5ef5639c (cdm-server): jenkins merging release branch into master (strategy: theirs)
jenkins
03:18 PM Revision de8aecf8 (cdm-server): updating poms for branch'release/5.33.0' with non-snapshot versions
jenkins
03:18 PM Revision a9737b94 (cdm-webapp): Merge branch 'release/5.33.0' into develop
jenkins
03:18 PM Revision e23d518a (cdm-webapp): jenkins merging release branch into master (strategy: theirs)
jenkins
03:17 PM Revision 796b7317 (cdm-webapp): updating poms for branch'release/5.33.0' with non-snapshot versions
jenkins
03:17 PM Revision f61e8284 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.33.0
jenkins
03:17 PM Revision fe12512b (cdm-vaadin): Merge branch 'release/5.33.0' into develop
jenkins
03:17 PM Revision d1f6c130 (cdm-vaadin): jenkins merging release branch into master (strategy: theirs)
jenkins
03:17 PM Revision 7b474ec8 (taxeditor): Merge branch 'release/5.33.0' into develop
jenkins
03:17 PM Revision 18185b7b (taxeditor): Merge branch 'release/5.33.0'
jenkins
03:14 PM Revision ed066693 (cdm-dataportal): Merge branch 'release/5.33.0' into develop
jenkins
03:14 PM Revision f142028d (cdm-dataportal): updating poms for branch'release/5.33.0' with non-snapshot versions
jenkins
03:14 PM Revision ed286abd (cdm-vaadin): updating poms for branch'release/5.33.0' with non-snapshot versions
jenkins
03:14 PM Revision 81a940dd (cdm-dataportal): release-preparation: production level css
jenkins
03:14 PM Revision 15f337cc (cdm-vaadin): jenkins bumping cdmlib.version to 5.33.0
jenkins
03:13 PM Revision 884c054b (cdmlib): Updating develop poms back to pre merge state
jenkins
03:13 PM Revision 80f9e3ec (cdmlib): Merge branch 'master' into develop
jenkins
03:13 PM Revision b6f9776b (cdmlib): updating develop poms to master versions to avoid merge conflicts
jenkins
03:13 PM Revision d2860136 (cdmlib): Merge branch 'release/5.33.0'
jenkins
02:59 PM Revision 1a950a85 (cdmlib): updating poms for branch'release/5.33.0' with non-snapshot versions
jenkins
02:29 PM Revision f9c23b4b (cdmlib): cleanup
Andreas Müller
02:16 PM Revision 59d59755 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.33.0-SNAPSHOT
jenkins
02:16 PM Revision 7aebcea7 (cdm-webapp): updating poms for 5.34.0-SNAPSHOT development
jenkins
02:16 PM Revision 6ecba9db (cdm-webapp): updating poms for 5.33.0 branch with snapshot versions
jenkins
02:16 PM Revision b88cb455 (cdm-webapp): jenkins bumping cdmlib.version and cdm.vaadin.version to 5.34.0-SNAPSHOT
jenkins
02:15 PM Revision e1b5318b (taxeditor): Updated version in pom / project files to taxeditor version : 5.34.0-SNAPSHOT and cdmlib version : 5.34.0-SNAPSHOT
jenkins
02:14 PM Revision 0390674c (taxeditor): Updated version in pom / project files to taxeditor version : 5.33.0 and cdmlib version : 5.33.0
jenkins
02:14 PM Revision bcc2cf4d (cdm-vaadin): jenkins bumping cdmlib.version to 5.33.0-SNAPSHOT
jenkins
02:14 PM Revision 83ba03c6 (cdm-vaadin): updating poms for 5.34.0-SNAPSHOT development
jenkins
02:14 PM Revision a3ae40d1 (cdm-vaadin): updating poms for 5.33.0 branch with snapshot versions
jenkins
02:13 PM Revision 2ce8a5ea (cdm-vaadin): jenkins bumping cdmlib.version to 5.34.0-SNAPSHOT
jenkins
02:13 PM Revision bbc91d7d (cdm-dataportal): updating poms for 5.34.0-SNAPSHOT development
jenkins
02:13 PM Revision de130602 (cdm-server): updating poms for 5.34.0-SNAPSHOT development
jenkins
02:10 PM Revision 20e49527 (cdmlib): updating poms for 5.34.0-SNAPSHOT development
jenkins
02:07 PM bug #10163: Fix label for "Orthography Conserved" and "Conserved Desig"
~~~
SELECT dtb. UUID, dtb.id, dtb.titleCache, r.label, r.abbreviatedlabel, r.text
FROM DefinedTermBase dtb INNER JO...
Andreas Müller
02:02 PM Revision 770e7be3 (cdmlib): code cleaning
Katja Luther
01:55 PM bug #10114 (Resolved): Problem with parser for author string with whitespace between initials
Katja Luther wrote in #note-15:
> Problems with the parsing of names seem to be solved. The problem with the sortind...
Katja Luther
10:55 AM bug #10114 (Feedback): Problem with parser for author string with whitespace between initials
Problems with the parsing of names seem to be solved. The problem with the sortindex updater still exist. Katja Luther
01:52 PM Revision 100c74ca (cdmlib): ref #10114: add transactional readonly= false to sortindex updater doInvoke method
Katja Luther
10:58 AM task #7404: Add linux and mac to editor installation documentation
Katja Luther wrote in #note-15:
> Andreas Müller wrote in #note-13:
> > In chapter 1 there is still missing informa...
Andreas Müller
10:12 AM Revision 01035329 (cdm-vaadin): ref #10167 update vaadin h2
Andreas Müller
10:11 AM Revision dd5651b5 (cdm-vaadin): cleanup
Andreas Müller
10:10 AM Revision fa4b1a64 (taxeditor): fix #10163: update taxeditor h2
Andreas Müller
10:07 AM Revision 06843967 (cdmlib): cleanup
Andreas Müller
10:06 AM Revision 7c24f116 (cdmlib): ref #10163 move model to v5.33
Andreas Müller

10/07/2022

03:53 PM bug #6228 (Closed): Fix behavior of multi-language editing
Andreas Müller wrote in #note-23:
> More or less everything is fixed (except for the filter for the default language...
Katja Luther
12:53 PM bug #6228 (Feedback): Fix behavior of multi-language editing
More or less everything is fixed (except for the filter for the default language as mentioned above).
Only I wonde...
Andreas Müller
03:31 PM task #7404: Add linux and mac to editor installation documentation
Andreas Müller wrote in #note-13:
> In chapter 1 there is still missing information which version is the recommended...
Katja Luther
03:25 PM bug #10135 (Closed): Created_by and when is missing for User and Group
Katja Luther
03:14 PM bug #10114: Problem with parser for author string with whitespace between initials
The nomenclatural reference problem seems to be solved, I could not reproduce it anymore. Katja Luther
02:50 PM bug #10114: Problem with parser for author string with whitespace between initials
Another appearance from Nadja:
ich bekomme diese Fehlermeldung wenn ich ganz normal eine nomenklatorische Referenz e...
Katja Luther
02:37 PM bug #10114: Problem with parser for author string with whitespace between initials
Andreas Müller wrote in #note-11:
> Katja Luther wrote in #note-2:
> > This exception also appears when trying to u...
Katja Luther
11:52 AM bug #10169: Exception when collapse and reopen language tree in preferences after deselect
please review. Katja Luther
11:51 AM bug #10169 (Resolved): Exception when collapse and reopen language tree in preferences after deselect
Applied in changeset commit:taxeditor|234cba577d9687d4ba76c2ffb55c873096376acd. Katja Luther
11:48 AM bug #10169 (Closed): Exception when collapse and reopen language tree in preferences after deselect
mail AM:
Das passiert, wenn ich vorher eine Sprache (im Vokabular ISO 639-2) deselecte und dann versuche ein (ande...
Katja Luther
11:50 AM Revision 234cba57 (taxeditor): fix #10169: checkedElements should not contain null values
Katja Luther
11:43 AM bug #10116 (Closed): Create a new name denied for users
Andreas Müller
11:31 AM bug #10116: Create a new name denied for users
Description (was): Blocker (2, role user),
Not able to create a new name in a given reference (submitted by curator...
Wolf-Henning Kusber

10/06/2022

03:47 PM bug #10114: Problem with parser for author string with whitespace between initials
Katja Luther wrote in #note-2:
> This exception also appears when trying to update sortindex in caryo_amaranthaceae....
Andreas Müller
03:36 PM bug #10114: Problem with parser for author string with whitespace between initials
This is hopefully fixed. Can you please review? Andreas Müller
03:35 PM bug #10114 (Resolved): Problem with parser for author string with whitespace between initials
Applied in changeset commit:cdmlib|25e433f2a4b506913253961cfea7a931b11afa1b. Andreas Müller
02:58 PM bug #10114: Problem with parser for author string with whitespace between initials
KL:
in der Methode CdmGenericDaoImpl.findMatching() in Zeile 635 wird als erstes ein flush() aufgerufen, wenn man ...
Andreas Müller
03:35 PM Revision 29e14a56 (cdmlib): cleanup
Andreas Müller
03:34 PM Revision 25e433f2 (cdmlib): fix #10114 possibliy fix read-only issue during serverside name parsing
Andreas Müller
01:05 PM Revision 27d6e65a (cdm-dataportal): ref #10156: do not show preference for field unit media as long as it does not work
Katja Luther
09:34 AM bug #10108 (Closed): Description for MediaSpecimen not shown even if it exists (i18n)
Katja Luther
09:31 AM bug #10108: Description for MediaSpecimen not shown even if it exists (i18n)
Generally this seems to be fully fixed and can be closed if you agree to my latest change. Andreas Müller
09:28 AM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
Not sure if LanguageStringBase().getText() can not be null therefore adapted code to avoid potential NPEs. Please rev... Andreas Müller
09:25 AM Revision 65caac45 (taxeditor): cleanup
Andreas Müller
09:24 AM Revision 0b629053 (taxeditor): ref #10108 avoid NPE in MediaSpecimenGeneralDetailElement
Andreas Müller
08:52 AM bug #10167 (In Progress): Selecting an existing name and adding a new journal does not work for phycobank registration
Andreas Müller
08:50 AM bug #10160 (Closed): Reactivate preference to open new window for every search
Works as expected Andreas Müller

10/05/2022

07:07 PM Revision 015a74aa (cdm-vaadin): cleanup
Andreas Müller
06:31 PM Revision e24c385e (cdm-vaadin): ref #10167 preliminary set logging to readonly handling in TaxonNamePopupEditor(cont.)
Andreas Müller
06:30 PM Revision 889e8684 (cdm-vaadin): cleanup
Andreas Müller
05:12 PM bug #10168 (In Progress): Name Type designation with restricted select list
Andreas Müller
04:32 PM bug #10168 (Closed): Name Type designation with restricted select list
Vaadin PhycoBank
Kusber, W.-H.: Testuser Title3. – Acta Bot. Croat.
New genus Neuiopsis
New species Neuiopsis vu...
Wolf-Henning Kusber
04:16 PM bug #10108 (Resolved): Description for MediaSpecimen not shown even if it exists (i18n)
Andreas Müller wrote in #note-23:
> Field size is ok now.
>
> It still shows the field in some cases though no text ...
Katja Luther
04:11 PM bug #6228 (Resolved): Fix behavior of multi-language editing
Katja Luther wrote in #note-21:
> Andreas Müller wrote in #note-20:
> > for review?
>
> maybe I will have a look...
Katja Luther
03:34 PM Revision c537bcc8 (taxeditor): ref #6228: improve translation wizard - fix getPreferredLanguage usage
Katja Luther
03:09 PM bug #10132 (Closed): Coding of special characters in Vaadin/PhycoBank (in docker instance only)
Katja Luther
03:07 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
Habe auch ein Sonderzeichen eingegeben, gespeichert und es wurde korrekt angezeigt (bei einem nicht publizierten Record) Wolf-Henning Kusber
03:03 PM bug #10132: Coding of special characters in Vaadin/PhycoBank (in docker instance only)
coding now correct. Ticket can be closed. Wolf-Henning Kusber
03:01 PM bug #10132 (Resolved): Coding of special characters in Vaadin/PhycoBank (in docker instance only)
Please review Katja Luther
03:03 PM bug #10160 (Resolved): Reactivate preference to open new window for every search
please review Katja Luther
01:21 PM bug #10166 (Closed): Textfield for protected titlecache trims blanks
Works as expected Andreas Müller
10:20 AM bug #10166: Textfield for protected titlecache trims blanks
please review Katja Luther
09:55 AM bug #10166 (Resolved): Textfield for protected titlecache trims blanks
Applied in changeset commit:taxeditor|c9373ffb0fc710e3afc702d2404f66fbffc567ad. Katja Luther
09:54 AM bug #10166 (Closed): Textfield for protected titlecache trims blanks
mail AM:
ich habe gerade festgestellt, dass sich im protected titleCache eines Specimen am Ende kein Leerzeichen e...
Katja Luther
01:14 PM bug #10141 (Closed): Exception (CCE) caused by logging setLevel in phycobank
Andreas Müller
11:36 AM bug #10141: Exception (CCE) caused by logging setLevel in phycobank
Test System (tested 05 Oct 2022):ticket can be closed.
create new in author in Vaadin: function as expecte. Bug fixe...
Wolf-Henning Kusber
10:47 AM Revision c5a6d29f (cdm-vaadin): ref #10167 preliminary set logging to readonly handling in TaxonNamePopupEditor
Andreas Müller
10:47 AM Revision 72620c6a (cdm-vaadin): cleanup
Andreas Müller
10:21 AM bug #10116 (Resolved): Create a new name denied for users
Wolf-Henning Kusber wrote in #note-15:
> Not working as expected (user):
>
> User wants to use an existing name t...
Andreas Müller
10:18 AM bug #10165: email and person data are not stored when creating a new account
Works as expected. Tested on test server. Andreas Müller
10:17 AM bug #10165 (Closed): email and person data are not stored when creating a new account
Andreas Müller
01:50 AM bug #10165 (Resolved): email and person data are not stored when creating a new account
Applied in changeset commit:cdmlib|42e3f9ecb74ba93769caf96e749a0c036f7e0004. Andreas Müller
01:48 AM bug #10165 (Closed): email and person data are not stored when creating a new account
Andreas Müller
10:15 AM bug #10167 (Closed): Selecting an existing name and adding a new journal does not work for phycobank registration
copied from #10116#note-15
Not working as expected (user):
User wants to use an existing name to insert a new l...
Andreas Müller
09:55 AM Revision c9373ffb (taxeditor): fix #10166: fix behaviour of titlecache field for specimen
Katja Luther
09:39 AM Revision 9924b62a (cdm-vaadin): cleanup
Andreas Müller
09:36 AM bug #10137: Compressed table does not show derivates anymore
Andreas Müller wrote in #note-12:
> The tests did all successfully run in dataportal.
> Is there already a test tha...
Katja Luther
09:34 AM bug #10137: Compressed table does not show derivates anymore

Andreas Müller wrote in #note-10:
> A minor issue: the country column has a right alignent now whereas it had a midd...
Katja Luther
02:30 AM Revision 13ae6bf5 (cdm-vaadin): cleanup
Andreas Müller
02:14 AM bug #7858: names used in the TaxonGraph can not be deleted if the user has no DELETE permission on Taxon
Also
```
remove withDeleteButton(false);
```
in TaxonNamePopupEditor after fixing
Andreas Müller
01:49 AM Revision 42e3f9ec (cdmlib): fix #10165, ref #10116 save email and person data when creating a new account
Andreas Müller
01:44 AM Revision debdf8b6 (cdmlib): cleanup
Andreas Müller

10/04/2022

05:48 PM bug #10164 (Duplicate): Self registration failed with AuthenticationCredentialsNotFoundException
This was caused by the first fix for #10116. Therefore I close it as duplicate and remove target version as it is not... Andreas Müller
05:45 PM bug #10164 (Resolved): Self registration failed with AuthenticationCredentialsNotFoundException
Applied in changeset commit:cdmlib|ab21be07c6d6f3334d4719b48a8f8b4010a7f38b. Andreas Müller
05:27 PM bug #10164 (Duplicate): Self registration failed with AuthenticationCredentialsNotFoundException
... on test (https://test.e-taxonomy.eu/cdmserver/phycobank/app/registration#!login/dashboard)
* I did choose regi...
Andreas Müller
05:45 PM Revision 0f229805 (cdmlib): cleanup
Andreas Müller
05:44 PM Revision ab21be07 (cdmlib): fix #10164, ref #10116 fix authentication token issue in self registration
Andreas Müller
04:48 PM bug #10137: Compressed table does not show derivates anymore
The tests did all successfully run in dataportal.
Is there already a test that fails if collection "CBFS" or label "...
Andreas Müller
04:34 PM bug #10137: Compressed table does not show derivates anymore
Generally it works as expected and ticket can be closed if alignment ist fixed.
I added a further derivate to field ...
Andreas Müller
04:30 PM bug #10137 (Feedback): Compressed table does not show derivates anymore
A minor issue: the country column has a right alignent now whereas it had a middle alignement before as you can see f... Andreas Müller
04:40 PM bug #10132 (Feedback): Coding of special characters in Vaadin/PhycoBank (in docker instance only)
Katja Luther wrote in #note-7:
> I tested a fresh docker installation in my VM and with this instance it does not ma...
Andreas Müller
04:14 PM bug #6228: Fix behavior of multi-language editing
Andreas Müller wrote in #note-20:
> for review?
maybe I will have a look with nightly before.
Katja Luther
04:08 PM bug #6228: Fix behavior of multi-language editing
for review? Andreas Müller
03:49 PM bug #6228: Fix behavior of multi-language editing
Andreas Müller wrote in #note-18:
> Everything works correct now except for the ride side of the translation editor
>...
Katja Luther
04:02 PM bug #8431: missing status bar for cdm light export
Noch ein neuer Punkt:
bei CDM-light stimmt die Prozentanzeige in der Statusleiste nicht mit der in der Progress-Vi...
Andreas Müller
03:49 PM Revision 207c5999 (taxeditor): ref #6228: improve translation wizard - continue
Katja Luther
03:48 PM Revision e7529454 (taxeditor): ref #6228: improve translation wizard
Katja Luther
01:58 PM Revision c1593bb9 (taxeditor): avoid NPE in agent selection dialog
Katja Luther
01:42 PM Revision 562cf06b (taxeditor): ref #10160: search only for local preference
Katja Luther
01:31 PM Revision 7d2b4420 (taxeditor): remove whitespaces from file name of cdmLight export
Katja Luther
11:47 AM Revision 6cd36c50 (cdm-dataportal): ref #10156: check whether the variable exist
Katja Luther
10:59 AM bug #10135: Created_by and when is missing for User and Group
Katja Luther wrote in #note-11:
> Andreas Müller wrote in #note-9:
>...
>
> But this is the same as before. Then...
Andreas Müller
10:24 AM bug #10135: Created_by and when is missing for User and Group
Andreas Müller wrote in #note-9:
> Final issue: there is still a relatively large gap before UUID for VersionableEnt...
Katja Luther

10/01/2022

10:36 AM Revision 95504cb1 (cdmlib): cleanup
Andreas Müller
10:35 AM Revision 942588ed (cdmlib): ref #10116 add group submitter to self-registered user if it exists
Andreas Müller
09:51 AM Revision 7cfab6d6 (cdmlib): rename package for VocabularyTreeCreator
Andreas Müller

09/30/2022

06:57 PM bug #6228 (Feedback): Fix behavior of multi-language editing
Everything works correct now except for the ride side of the translation editor
1. When opening the trans-editor t...
Andreas Müller
05:13 PM bug #10135 (Feedback): Created_by and when is missing for User and Group
Andreas Müller
05:12 PM bug #10135: Created_by and when is missing for User and Group
Final issue: there is still a relatively large gap before UUID for VersionableEntities:
![](clipboard-202209301711...
Andreas Müller
11:50 AM bug #10135 (Resolved): Created_by and when is missing for User and Group
Katja Luther
11:50 AM bug #10135: Created_by and when is missing for User and Group
Andreas Müller wrote in #note-6:
> Actually the gap does not look nice and more important it requires more scrolling...
Katja Luther
11:05 AM bug #10135 (Feedback): Created_by and when is missing for User and Group
Actually the gap does not look nice and more important it requires more scrolling when trying to read the ID and UUID... Andreas Müller
05:09 PM bug #10160 (Feedback): Reactivate preference to open new window for every search
Katja Luther wrote in #note-9:
> Andreas Müller wrote in #note-8:
> > Andreas Müller wrote in #note-6:
> > > After...
Andreas Müller
12:39 PM bug #10160 (Resolved): Reactivate preference to open new window for every search
Andreas Müller wrote in #note-8:
> Andreas Müller wrote in #note-6:
> > After activating the preference a new windo...
Katja Luther
12:28 PM bug #10160 (Feedback): Reactivate preference to open new window for every search
Andreas Müller wrote in #note-6:
> After activating the preference a new window is not opened after running the sear...
Andreas Müller
12:01 PM bug #10160 (Resolved): Reactivate preference to open new window for every search
Andreas Müller wrote in #note-6:
> After activating the preference a new window is not opened after running the sear...
Katja Luther
11:44 AM bug #10160: Reactivate preference to open new window for every search
After activating the preference a new window is not opened after running the search a second time. Andreas Müller
11:17 AM bug #10160: Reactivate preference to open new window for every search
It was on top level before we cleaned-up the preferences. I think we should put it to search. At least that was the f... Andreas Müller
11:05 AM bug #10160: Reactivate preference to open new window for every search
Andreas Müller wrote in #note-2:
> I can't find the preferences. Please leave a message where to find it.
It is i...
Katja Luther
10:56 AM bug #10160 (Feedback): Reactivate preference to open new window for every search
I can't find the preferences. Please leave a message where to find it. Andreas Müller
05:01 PM bug #10163: Fix label for "Orthography Conserved" and "Conserved Desig"
Still needs to switch to schema version 5.33 and after release check databases for possibly incorrect data. Andreas Müller
05:00 PM bug #10163 (Resolved): Fix label for "Orthography Conserved" and "Conserved Desig"
Applied in changeset commit:cdmlib|781c088070cf405452780604dc9358046e0c35e8. Andreas Müller
04:42 PM bug #10163 (Closed): Fix label for "Orthography Conserved" and "Conserved Desig"
When fixing #9311 the label update for "Conserved Desig => Conservation Designated" went wrong as the wrong term was ... Andreas Müller
05:00 PM Revision 781c0880 (cdmlib): fix #10163 fix labels for "Orthography Conserved" and "Conserved Desig"
Andreas Müller
04:00 PM Revision 9139abb2 (cdmlib): cleanup
Andreas Müller
01:54 PM task #7404 (Feedback): Add linux and mac to editor installation documentation
In chapter 1 there is still missing information which version is the recommended version for linux. Do we have any re... Andreas Müller
01:28 PM Revision f73a47f6 (cdmlib): ref #10156: call service method with parameter
Katja Luther
01:01 PM bug #10107 (Closed): i18n bug when editing media not having a default language title
Seems to work as expected, now. Andreas Müller
12:51 PM bug #10121 (Worksforme): ConstraintViolationException when editing placement notes
Could not reproduce it anymore, tested add status -> close -> ok
set note (status already existed) -> close -> ok
...
Katja Luther
12:39 PM Revision 9186d805 (taxeditor): ref #10160: fix preference setting
Katja Luther
12:28 PM Revision c14a1327 (taxeditor): ref #10108: check whether text exist in descriptions
Katja Luther
12:19 PM bug #10162: Problems when deleting names involved in a namerelationship
mail WB:
Hallo,
nach dem CDM-L Export kam folgendes:
~~~
An unexpected error occurred when handling homotypic group...
Katja Luther
10:35 AM bug #10162 (New): Problems when deleting names involved in a namerelationship
Deleting of names with namerelationship results in namerelationship pointing to a not existing name. Katja Luther
12:01 PM bug #10108 (Feedback): Description for MediaSpecimen not shown even if it exists (i18n)
Field size is ok now.
It still shows the field in some cases though no text exists. E.g.
![](clipboard-20220930...
Andreas Müller
12:01 PM Revision 75ce29f0 (taxeditor): ref #10160: move preference to search
Katja Luther
11:57 AM Revision 84cfbeed (taxeditor): ref #10135: remove createSection again and implement it in versionable and cdmBase element -continue
Katja Luther
11:51 AM bug #10129: Allow to create MediaSpecimen when creating specimen for a type designation
I think this is not as fast as it should be to implement it in this release, so I would move it to 5.35. Katja Luther
11:49 AM Revision a3db6d8c (taxeditor): ref #10135: remove createSection again and implement it in versionable and cdmBase element
Katja Luther
11:21 AM bug #10151 (Closed): Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
Andreas Müller wrote in #note-7:
> Works as expected. Please still correct the label "Create Field Unit For selected...
Katja Luther
11:11 AM bug #10151 (Feedback): Creating a field unit with a given taxon filter does not create a taxon-secimen relationship
Works as expected. Please still correct the label "Create Field Unit For selected taxon" -> "Create field unit for se... Andreas Müller
11:20 AM Revision bee75d93 (taxeditor): ref #10151: fix menu label
Katja Luther
11:14 AM bug #10137 (Resolved): Compressed table does not show derivates anymore
I adapted the collection of the derivedUnitDtos and now all informations are shown again. Please have a look. (for ex... Katja Luther
 

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